AlfalfaGEDB | Msa0873070

M. sativa cultivar zhongmu-4 / Msa0873070

KEGG: K21374
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
PFAM: PF00201.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0873070	RHN50153.1	79.039	229	47	1	272	500	1	228	2.23e-120	380
Msa0873070	RHN50153.1	91.865	504	41	0	1	504	230	733	0.0	959

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0873070	sp\|F8WKW1\|UGT2_GARJA	59.329	477	188	4	31	504	8	481	0.0	594

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0873070	A0A396HC01	79.039	229	47	1	272	500	1	228	1.07e-120	380
Msa0873070	A0A396HC01	91.865	504	41	0	1	504	230	733	0.0	959

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0873070	0.814141	1.791686e-51	-8.615850e-47
Msa0001040	Msa0873070	0.817125	3.878003e-52	-8.615850e-47
Msa0001510	Msa0873070	0.826281	2.956684e-54	-8.615850e-47
Msa0002110	Msa0873070	0.852347	4.900249e-61	-8.615850e-47
Msa0002690	Msa0873070	0.879330	1.361171e-69	-8.615850e-47
Msa0002700	Msa0873070	0.870682	1.213556e-66	-8.615850e-47
Msa0003340	Msa0873070	0.852226	5.304477e-61	-8.615850e-47
Msa0003370	Msa0873070	0.810455	1.143094e-50	-8.615850e-47
Msa0003450	Msa0873070	0.812405	4.310603e-51	-8.615850e-47
Msa0004180	Msa0873070	0.859242	4.737265e-63	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0873070	MtrunA17_Chr6g0454301	91.865	504	41	0	1	504	230	733	0.0	959
Msa0873070	MtrunA17_Chr6g0454301	79.039	229	47	1	272	500	1	228	2.05e-124	380
Msa0873070	MtrunA17_Chr8g0336331	82.083	480	85	1	25	504	1	479	0.0	830
Msa0873070	MtrunA17_Chr3g0078841	80.833	480	92	0	25	504	1	480	0.0	826
Msa0873070	MtrunA17_Chr6g0454341	80.208	480	95	0	25	504	1	480	0.0	825
Msa0873070	MtrunA17_Chr6g0454321	79.237	472	98	0	25	496	1	472	0.0	801
Msa0873070	MtrunA17_Chr6g0454321	71.901	121	31	1	29	146	499	619	1.49e-47	174
Msa0873070	MtrunA17_Chr6g0454401	76.033	484	111	3	25	504	1	483	0.0	758
Msa0873070	MtrunA17_Chr6g0454181	74.120	483	121	2	25	504	1	482	0.0	754
Msa0873070	MtrunA17_Chr6g0454191	74.587	484	118	3	25	504	1	483	0.0	751

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0873070	AT1G22360.1	55.301	481	211	3	25	503	1	479	0.0	570
Msa0873070	AT1G22380.1	55.579	475	207	3	31	503	10	482	0.0	566
Msa0873070	AT1G22340.1	55.346	477	208	4	31	504	10	484	0.0	564
Msa0873070	AT1G22400.1	53.878	477	215	4	30	503	9	483	0.0	554
Msa0873070	AT1G22360.2	53.430	481	208	4	25	503	1	467	0.0	544
Msa0873070	AT1G22370.2	54.906	479	203	5	29	503	8	477	0.0	533
Msa0873070	AT1G78270.1	50.617	486	230	6	22	502	1	481	0.0	518
Msa0873070	AT1G22370.1	55.116	303	130	3	205	503	7	307	4.34e-112	334
Msa0873070	AT5G59590.1	35.443	474	266	12	31	498	7	446	2.39e-85	271
Msa0873070	AT3G11340.1	33.895	475	274	11	32	502	7	445	4.67e-85	270

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Find 115 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAGGGATACCATCTA+AGG	0.446365	6_1:+8728565	None:intergenic
AAACGTTTGCTCAAATCAAG+AGG	0.611549	6_1:-8728596	Msa0873070:CDS
AAACTGTTAGAGTTTGCTTG+GGG	0.652785	6_1:-8726466	Msa0873070:CDS
AAAGGTCTCACGCCACTCAA+AGG	0.587766	6_1:-8728248	Msa0873070:intron
AACAACTGATCCTGGTTCCT+TGG	0.422428	6_1:+8726528	None:intergenic
AACATGCACTGGCTGGAAAA+AGG	0.279272	6_1:+8728309	None:intergenic
AACTCCACAAATTGATCAAT+TGG	0.329261	6_1:-8726608	Msa0873070:CDS
AACTTTAATATGTAAAGTAG+GGG	0.616880	6_1:-8725772	None:intergenic
AAGATACCGAGTGTCTTGAA+TGG	0.570424	6_1:-8726558	Msa0873070:CDS
AAGTCTAACATAAAATCATT+TGG	0.425125	6_1:+8726778	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGATTTATATGTCCTTGAAA+TGG	+	chr6_1:8725958-8725977	None:intergenic	30.0%
GAAGTTCACAAAAAGGTTTA+AGG	+	chr6_1:8726206-8726225	None:intergenic	30.0%
CTTGTAAGAAGTTCACAAAA+AGG	+	chr6_1:8726213-8726232	None:intergenic	30.0%
TCAGAAAATAAGCAAGTAAC+TGG	+	chr6_1:8726261-8726280	None:intergenic	30.0%
CTGGAAAAAGGATAACATTT+GGG	+	chr6_1:8726329-8726348	None:intergenic	30.0%
TTACGTTCCTTTGTAGAAAA+AGG	-	chr6_1:8726381-8726400	Msa0873070:CDS	30.0%
GTAGAAGAAATAGAGGAAAA+TGG	-	chr6_1:8726816-8726835	Msa0873070:CDS	30.0%
CTAAAAAATTGTATTGGAGG+AGG	-	chr6_1:8726901-8726920	Msa0873070:intron	30.0%
ATATATCGAGAGTTACTCTT+AGG	+	chr6_1:8727145-8727164	None:intergenic	30.0%
TTTATCGATCAAATTTGTGG+AGG	+	chr6_1:8727249-8727268	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	8725775	8728894	8725775	ID=Msa0873070;Name=Msa0873070
chr6_1	mRNA	8725775	8728894	8725775	ID=Msa0873070-mRNA-1;Parent=Msa0873070;Name=Msa0873070-mRNA-1;_AED=0.33;_eAED=0.33;_QI=60\|1\|1\|1\|0.5\|0.33\|3\|184\|504
chr6_1	exon	8725775	8725881	8725775	ID=Msa0873070-mRNA-1:exon:2664;Parent=Msa0873070-mRNA-1
chr6_1	exon	8725902	8726907	8725902	ID=Msa0873070-mRNA-1:exon:2663;Parent=Msa0873070-mRNA-1
chr6_1	exon	8728249	8728894	8728249	ID=Msa0873070-mRNA-1:exon:2662;Parent=Msa0873070-mRNA-1
chr6_1	five_prime_UTR	8728835	8728894	8728835	ID=Msa0873070-mRNA-1:five_prime_utr;Parent=Msa0873070-mRNA-1
chr6_1	CDS	8728249	8728834	8728249	ID=Msa0873070-mRNA-1:cds;Parent=Msa0873070-mRNA-1
chr6_1	CDS	8725979	8726907	8725979	ID=Msa0873070-mRNA-1:cds;Parent=Msa0873070-mRNA-1
chr6_1	three_prime_UTR	8725902	8725978	8725902	ID=Msa0873070-mRNA-1:three_prime_utr;Parent=Msa0873070-mRNA-1
chr6_1	three_prime_UTR	8725775	8725881	8725775	ID=Msa0873070-mRNA-1:three_prime_utr;Parent=Msa0873070-mRNA-1

Gene Sequence

>Msa0873070

ATGCTTATCACTTGTTTCTCAACCTCGTATCTTGCACACATAGCAATAACATTCAATAGAGAATTATCAAAAATGGGAAACTTTGCAAACAGAAAACCACATGCTGTGTTGATTCCAGCTCCATTTCAAGGACATATAAATCCATTGTTCAAACTAGCAAAACTTCTTCACCTTAGAGGCTTTTACATAACCTTTGTCAACACTGAATACAATCATAAACGTTTGCTCAAATCAAGAGGTGCAAATGCCTTAGATGGTATCCCTGGTTTTAGCTTTGAAACCATACCAGATGGTCTAACACCAATAGAAGGTGATGGTGATGTTAGTCAAGACATACCCTCTCTTGCTCAATCTATAAGAAAGAACTTCCTTAAACCTTTTTGTGAACTTCTTACAAGACTTAATCACTCTGCCAATGTTCCACCAGTTACTTGCTTATTTTCTGATTATTTTTTGAGCTTTACTATACAAGCTGGTGAAGAATTTGCAATCCCAAATGTTATCCTTTTTCCAGCCAGTGCATGTTTGTTATTGAGTATTCTTCACTTACGTTCCTTTGTAGAAAAAGGTCTCACGCCACTCAAAGATGAGAGTTATCTAACAAATGGATATTTGGAAACTAAAGTAGATTGGATTCCAGGTTTGAAAAACTTTCGGTTGAAGGACATTGTTGACTATATCAGGACAACAGATCCAAATGATTTTATGTTAGACTTTGTAATTGATGTGGCTGATAAAGTTCATAAAAACTCTACTATTATTTTGAATACTTTCAATGAACTTGAGAGTGATGTAATAGATGCTCTCTCCTCTATGTTTCCTTCTCTTTACACCTTTGGCCCTTTACCTTTATTATTAAACCAAACTCCACAAATTGATCAATTGGATTCTTTAGGTTCCAACATATGGAAAGAAGATACCGAGTGTCTTGAATGGCTTGGATCCAAGGAACCAGGATCAGTTGTTTATGTGAATTTCGGCAGCCTTACAGTTATGACTGAAGAGAAACTGTTAGAGTTTGCTTGGGGTTTGGCCAATTGCAATAAACCTTTTTTGTGGATCATTAGGCCTGATCTTGTCACTGGTGGCTCAAAAGTTTTGTCATCGGAGTTTGTTAATGAAATTTCAGATAGAGGCCTAATAGTGAGTTGGTGTCCGCAGGAGCAAGTTTTAAATCATCCTTCAGTTGGTGGATTCTTGACTCATTGTGGATGGAACTCAACCACTGAAAGCATATGTGCTGGAGTTCCAATGTTGTGTTGGCCATTTTTCACTGATCAGCCAACAAACTGTAGACTTATTTGTAATGAATGGGAGATTGGGATGGAAATTGATACGAATGTAAAGAGAGAGGAGGTGGAGAAGCTTGTCAATGAATTGATGGTGGGGGAGAAAGGAAAGAAGATGAGGCAAAAGGCAATCGAGTTGAAGAAGAAGGCGGAGGAGAACACGAGACCTGGAGGTTGTTCATACATGAACTTGGACAAATTGATCAAGGAGGTGTTGCTTAAATAA

Protein sequence

>Msa0873070

MLITCFSTSYLAHIAITFNRELSKMGNFANRKPHAVLIPAPFQGHINPLFKLAKLLHLRGFYITFVNTEYNHKRLLKSRGANALDGIPGFSFETIPDGLTPIEGDGDVSQDIPSLAQSIRKNFLKPFCELLTRLNHSANVPPVTCLFSDYFLSFTIQAGEEFAIPNVILFPASACLLLSILHLRSFVEKGLTPLKDESYLTNGYLETKVDWIPGLKNFRLKDIVDYIRTTDPNDFMLDFVIDVADKVHKNSTIILNTFNELESDVIDALSSMFPSLYTFGPLPLLLNQTPQIDQLDSLGSNIWKEDTECLEWLGSKEPGSVVYVNFGSLTVMTEEKLLEFAWGLANCNKPFLWIIRPDLVTGGSKVLSSEFVNEISDRGLIVSWCPQEQVLNHPSVGGFLTHCGWNSTTESICAGVPMLCWPFFTDQPTNCRLICNEWEIGMEIDTNVKREEVEKLVNELMVGEKGKKMRQKAIELKKKAEENTRPGGCSYMNLDKLIKEVLLK*