Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457270 | PNX75878.1 | 57.759 | 116 | 23 | 1 | 1 | 116 | 1 | 90 | 3.03e-30 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457270 | A0A2K3LBG3 | 57.759 | 116 | 23 | 1 | 1 | 116 | 1 | 90 | 1.45e-30 | 114 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000610 | Msa1457270 | 0.833417 | 5.396982e-56 | -8.615850e-47 |
| Msa0005500 | Msa1457270 | 0.826238 | 3.027261e-54 | -8.615850e-47 |
| Msa0014970 | Msa1457270 | 0.825713 | 4.035192e-54 | -8.615850e-47 |
| Msa0024490 | Msa1457270 | 0.821118 | 4.785907e-53 | -8.615850e-47 |
| Msa0049670 | Msa1457270 | 0.805624 | 1.219990e-49 | -8.615850e-47 |
| Msa0050320 | Msa1457270 | 0.801366 | 9.314630e-49 | -8.615850e-47 |
| Msa0057270 | Msa1457270 | 0.801262 | 9.781782e-49 | -8.615850e-47 |
| Msa0063850 | Msa1457270 | 0.800676 | 1.288825e-48 | -8.615850e-47 |
| Msa0081700 | Msa1457270 | 0.826215 | 3.065124e-54 | -8.615850e-47 |
| Msa0098500 | Msa1457270 | 0.810992 | 8.746751e-51 | -8.615850e-47 |
| Msa0108500 | Msa1457270 | 0.833666 | 4.679226e-56 | -8.615850e-47 |
| Msa0111000 | Msa1457270 | 0.847644 | 1.015113e-59 | -8.615850e-47 |
| Msa1344870 | Msa1457270 | 0.828382 | 9.272151e-55 | -8.615850e-47 |
| Msa1356100 | Msa1457270 | 0.812621 | 3.865818e-51 | -8.615850e-47 |
| Msa1359880 | Msa1457270 | 0.830408 | 2.987440e-55 | -8.615850e-47 |
| Msa1363310 | Msa1457270 | 0.833597 | 4.867439e-56 | -8.615850e-47 |
| Msa1371260 | Msa1457270 | 0.879219 | 1.489239e-69 | -8.615850e-47 |
| Msa1381300 | Msa1457270 | 0.809187 | 2.141647e-50 | -8.615850e-47 |
| Msa1384410 | Msa1457270 | 0.826165 | 3.150196e-54 | -8.615850e-47 |
| Msa1386580 | Msa1457270 | 0.834617 | 2.702784e-56 | -8.615850e-47 |
| Msa1388720 | Msa1457270 | 0.833303 | 5.761456e-56 | -8.615850e-47 |
| Msa1389670 | Msa1457270 | 0.813250 | 2.815280e-51 | -8.615850e-47 |
| Msa1395360 | Msa1457270 | 0.828615 | 8.146335e-55 | -8.615850e-47 |
| Msa1410480 | Msa1457270 | 0.800952 | 1.131807e-48 | -8.615850e-47 |
| Msa1410500 | Msa1457270 | 0.804125 | 2.509670e-49 | -8.615850e-47 |
| Msa1414790 | Msa1457270 | 0.821472 | 3.965651e-53 | -8.615850e-47 |
| Msa1421520 | Msa1457270 | 0.810808 | 9.587122e-51 | -8.615850e-47 |
| Msa1432730 | Msa1457270 | 0.831337 | 1.768012e-55 | -8.615850e-47 |
| Msa1433650 | Msa1457270 | 0.808261 | 3.377822e-50 | -8.615850e-47 |
| Msa1438410 | Msa1457270 | 0.877152 | 7.900748e-69 | -8.615850e-47 |
| Msa1454330 | Msa1457270 | 0.804383 | 2.218247e-49 | -8.615850e-47 |
| Msa1457270 | Msa1464470 | 0.811185 | 7.942613e-51 | -8.615850e-47 |
| Msa0604890 | Msa1457270 | 0.834816 | 2.408525e-56 | -8.615850e-47 |
| Msa0606340 | Msa1457270 | 0.816889 | 4.381359e-52 | -8.615850e-47 |
| Msa0606380 | Msa1457270 | 0.800357 | 1.497349e-48 | -8.615850e-47 |
| Msa0611450 | Msa1457270 | 0.804750 | 1.859882e-49 | -8.615850e-47 |
| Msa0617470 | Msa1457270 | 0.838872 | 2.221662e-57 | -8.615850e-47 |
| Msa0619670 | Msa1457270 | -0.804415 | 2.184543e-49 | -8.615850e-47 |
| Msa0622800 | Msa1457270 | 0.802184 | 6.328149e-49 | -8.615850e-47 |
| Msa0622930 | Msa1457270 | 0.808193 | 3.493093e-50 | -8.615850e-47 |
| Msa0625550 | Msa1457270 | 0.805752 | 1.147077e-49 | -8.615850e-47 |
| Msa0628840 | Msa1457270 | 0.807107 | 5.940687e-50 | -8.615850e-47 |
| Msa0635070 | Msa1457270 | 0.828883 | 7.018154e-55 | -8.615850e-47 |
| Msa0639630 | Msa1457270 | 0.819947 | 8.885876e-53 | -8.615850e-47 |
| Msa0646180 | Msa1457270 | 0.833314 | 5.725377e-56 | -8.615850e-47 |
| Msa0648260 | Msa1457270 | 0.818022 | 2.434930e-52 | -8.615850e-47 |
| Msa0651720 | Msa1457270 | 0.802523 | 5.388192e-49 | -8.615850e-47 |
| Msa0654400 | Msa1457270 | 0.820784 | 5.713125e-53 | -8.615850e-47 |
| Msa0654500 | Msa1457270 | 0.817203 | 3.725240e-52 | -8.615850e-47 |
| Msa0656570 | Msa1457270 | 0.817025 | 4.085045e-52 | -8.615850e-47 |
| Msa0677460 | Msa1457270 | 0.816055 | 6.733787e-52 | -8.615850e-47 |
| Msa0685390 | Msa1457270 | 0.800625 | 1.320210e-48 | -8.615850e-47 |
| Msa0690100 | Msa1457270 | 0.818959 | 1.492711e-52 | -8.615850e-47 |
| Msa0691350 | Msa1457270 | 0.822666 | 2.096210e-53 | -8.615850e-47 |
| Msa0700250 | Msa1457270 | 0.838747 | 2.393232e-57 | -8.615850e-47 |
| Msa0704350 | Msa1457270 | 0.808765 | 2.636688e-50 | -8.615850e-47 |
| Msa0706700 | Msa1457270 | 0.875988 | 1.995183e-68 | -8.615850e-47 |
| Msa0707870 | Msa1457270 | 0.808370 | 3.202780e-50 | -8.615850e-47 |
| Msa0708840 | Msa1457270 | 0.808314 | 3.291896e-50 | -8.615850e-47 |
| Msa0713590 | Msa1457270 | 0.805032 | 1.623896e-49 | -8.615850e-47 |
| Msa0714230 | Msa1457270 | 0.801162 | 1.025706e-48 | -8.615850e-47 |
| Msa0722660 | Msa1457270 | 0.846924 | 1.599393e-59 | -8.615850e-47 |
| Msa0734190 | Msa1457270 | 0.812071 | 5.098668e-51 | -8.615850e-47 |
| Msa0741600 | Msa1457270 | 0.800587 | 1.344141e-48 | -8.615850e-47 |
| Msa0742690 | Msa1457270 | 0.806068 | 9.843123e-50 | -8.615850e-47 |
| Msa0747660 | Msa1457270 | 0.815604 | 8.488483e-52 | -8.615850e-47 |
| Msa0749130 | Msa1457270 | 0.806404 | 8.361005e-50 | -8.615850e-47 |
| Msa0779830 | Msa1457270 | 0.820498 | 6.645487e-53 | -8.615850e-47 |
| Msa0829250 | Msa1457270 | 0.813106 | 3.027849e-51 | -8.615850e-47 |
| Msa0829770 | Msa1457270 | 0.807178 | 5.739803e-50 | -8.615850e-47 |
| Msa0835070 | Msa1457270 | 0.802285 | 6.033237e-49 | -8.615850e-47 |
| Msa0127910 | Msa1457270 | 0.805635 | 1.213992e-49 | -8.615850e-47 |
| Msa0138380 | Msa1457270 | 0.807565 | 4.751225e-50 | -8.615850e-47 |
| Msa0163540 | Msa1457270 | 0.803029 | 4.236411e-49 | -8.615850e-47 |
| Msa0174060 | Msa1457270 | 0.807474 | 4.966590e-50 | -8.615850e-47 |
| Msa0183960 | Msa1457270 | 0.831179 | 1.933160e-55 | -8.615850e-47 |
| Msa0198140 | Msa1457270 | 0.846433 | 2.178147e-59 | -8.615850e-47 |
| Msa0198220 | Msa1457270 | 0.842408 | 2.633874e-58 | -8.615850e-47 |
| Msa0216150 | Msa1457270 | 0.818558 | 1.841394e-52 | -8.615850e-47 |
| Msa0232170 | Msa1457270 | 0.813048 | 3.116848e-51 | -8.615850e-47 |
| Msa0232660 | Msa1457270 | 0.805322 | 1.411476e-49 | -8.615850e-47 |
| Msa1236190 | Msa1457270 | 0.822122 | 2.804075e-53 | -8.615850e-47 |
| Msa1257930 | Msa1457270 | 0.814512 | 1.483562e-51 | -8.615850e-47 |
| Msa1257960 | Msa1457270 | 0.823713 | 1.194303e-53 | -8.615850e-47 |
| Msa1262740 | Msa1457270 | 0.832181 | 1.094415e-55 | -8.615850e-47 |
| Msa1279200 | Msa1457270 | 0.807154 | 5.805263e-50 | -8.615850e-47 |
| Msa1298980 | Msa1457270 | 0.832794 | 7.713748e-56 | -8.615850e-47 |
| Msa1300370 | Msa1457270 | 0.808840 | 2.540841e-50 | -8.615850e-47 |
| Msa1305970 | Msa1457270 | 0.815520 | 8.864848e-52 | -8.615850e-47 |
| Msa1328680 | Msa1457270 | 0.819482 | 1.134777e-52 | -8.615850e-47 |
| Msa1332340 | Msa1457270 | 0.800866 | 1.178763e-48 | -8.615850e-47 |
| Msa0368450 | Msa1457270 | 0.810713 | 1.005234e-50 | -8.615850e-47 |
| Msa0375930 | Msa1457270 | 0.823208 | 1.567547e-53 | -8.615850e-47 |
| Msa0385280 | Msa1457270 | 0.871874 | 4.901135e-67 | -8.615850e-47 |
| Msa0387630 | Msa1457270 | 0.803980 | 2.690540e-49 | -8.615850e-47 |
| Msa0390590 | Msa1457270 | 0.808417 | 3.128786e-50 | -8.615850e-47 |
| Msa0413590 | Msa1457270 | 0.811143 | 8.114276e-51 | -8.615850e-47 |
| Msa0424570 | Msa1457270 | 0.823279 | 1.508665e-53 | -8.615850e-47 |
| Msa0427890 | Msa1457270 | 0.802891 | 4.523160e-49 | -8.615850e-47 |
| Msa0436590 | Msa1457270 | 0.804057 | 2.592765e-49 | -8.615850e-47 |
| Msa0436610 | Msa1457270 | 0.812424 | 4.268717e-51 | -8.615850e-47 |
| Msa0458690 | Msa1457270 | 0.825579 | 4.340683e-54 | -8.615850e-47 |
| Msa0461620 | Msa1457270 | 0.807557 | 4.769526e-50 | -8.615850e-47 |
| Msa0474120 | Msa1457270 | 0.802272 | 6.070160e-49 | -8.615850e-47 |
| Msa1016450 | Msa1457270 | 0.836000 | 1.209384e-56 | -8.615850e-47 |
| Msa1018210 | Msa1457270 | 0.804606 | 1.992725e-49 | -8.615850e-47 |
| Msa1026430 | Msa1457270 | 0.800324 | 1.519995e-48 | -8.615850e-47 |
| Msa1038570 | Msa1457270 | 0.818432 | 1.966615e-52 | -8.615850e-47 |
| Msa1038610 | Msa1457270 | 0.815240 | 1.022982e-51 | -8.615850e-47 |
| Msa1039150 | Msa1457270 | 0.819463 | 1.146384e-52 | -8.615850e-47 |
| Msa1049810 | Msa1457270 | -0.803033 | 4.228246e-49 | -8.615850e-47 |
| Msa1055710 | Msa1457270 | 0.815556 | 8.702172e-52 | -8.615850e-47 |
| Msa1057940 | Msa1457270 | 0.839477 | 1.548425e-57 | -8.615850e-47 |
| Msa1065090 | Msa1457270 | 0.867964 | 9.279375e-66 | -8.615850e-47 |
| Msa1078590 | Msa1457270 | 0.833366 | 5.557312e-56 | -8.615850e-47 |
| Msa1078760 | Msa1457270 | 0.821854 | 3.235292e-53 | -8.615850e-47 |
| Msa1083660 | Msa1457270 | 0.802281 | 6.044540e-49 | -8.615850e-47 |
| Msa1089130 | Msa1457270 | 0.810970 | 8.844937e-51 | -8.615850e-47 |
| Msa1090020 | Msa1457270 | 0.826417 | 2.744722e-54 | -8.615850e-47 |
| Msa1104020 | Msa1457270 | 0.837231 | 5.871142e-57 | -8.615850e-47 |
| Msa0240460 | Msa1457270 | 0.803551 | 3.302982e-49 | -8.615850e-47 |
| Msa0240630 | Msa1457270 | 0.804750 | 1.859611e-49 | -8.615850e-47 |
| Msa0244370 | Msa1457270 | 0.821639 | 3.627376e-53 | -8.615850e-47 |
| Msa0278340 | Msa1457270 | 0.842162 | 3.060319e-58 | -8.615850e-47 |
| Msa0282880 | Msa1457270 | 0.826820 | 2.199707e-54 | -8.615850e-47 |
| Msa0288280 | Msa1457270 | 0.802514 | 5.410476e-49 | -8.615850e-47 |
| Msa0294200 | Msa1457270 | -0.828018 | 1.135067e-54 | -8.615850e-47 |
| Msa0298590 | Msa1457270 | 0.812962 | 3.256220e-51 | -8.615850e-47 |
| Msa0315390 | Msa1457270 | 0.808929 | 2.432458e-50 | -8.615850e-47 |
| Msa0321180 | Msa1457270 | 0.836109 | 1.134671e-56 | -8.615850e-47 |
| Msa0321200 | Msa1457270 | 0.833708 | 4.566678e-56 | -8.615850e-47 |
| Msa0324390 | Msa1457270 | 0.802536 | 5.355476e-49 | -8.615850e-47 |
| Msa0331070 | Msa1457270 | 0.809036 | 2.308033e-50 | -8.615850e-47 |
| Msa0334450 | Msa1457270 | 0.805498 | 1.296680e-49 | -8.615850e-47 |
| Msa0336550 | Msa1457270 | 0.806054 | 9.910413e-50 | -8.615850e-47 |
| Msa0362440 | Msa1457270 | 0.801795 | 7.608863e-49 | -8.615850e-47 |
| Msa1112230 | Msa1457270 | 0.810026 | 1.414491e-50 | -8.615850e-47 |
| Msa1121720 | Msa1457270 | 0.813989 | 1.935666e-51 | -8.615850e-47 |
| Msa1129120 | Msa1457270 | 0.833764 | 4.422225e-56 | -8.615850e-47 |
| Msa1129130 | Msa1457270 | 0.807176 | 5.744701e-50 | -8.615850e-47 |
| Msa1129160 | Msa1457270 | 0.826450 | 2.694273e-54 | -8.615850e-47 |
| Msa1129470 | Msa1457270 | 0.809605 | 1.742013e-50 | -8.615850e-47 |
| Msa1147600 | Msa1457270 | 0.825148 | 5.488645e-54 | -8.615850e-47 |
| Msa1153830 | Msa1457270 | 0.848624 | 5.443585e-60 | -8.615850e-47 |
| Msa1169590 | Msa1457270 | 0.845704 | 3.439131e-59 | -8.615850e-47 |
| Msa1177360 | Msa1457270 | 0.828107 | 1.080514e-54 | -8.615850e-47 |
| Msa1199540 | Msa1457270 | 0.814958 | 1.181807e-51 | -8.615850e-47 |
| Msa1207710 | Msa1457270 | 0.816829 | 4.518540e-52 | -8.615850e-47 |
| Msa1213470 | Msa1457270 | 0.808143 | 3.579290e-50 | -8.615850e-47 |
| Msa1220390 | Msa1457270 | 0.810111 | 1.356142e-50 | -8.615850e-47 |
| Msa0483160 | Msa1457270 | 0.847646 | 1.013864e-59 | -8.615850e-47 |
| Msa0486850 | Msa1457270 | 0.806097 | 9.703286e-50 | -8.615850e-47 |
| Msa0502900 | Msa1457270 | 0.839633 | 1.410015e-57 | -8.615850e-47 |
| Msa0507960 | Msa1457270 | 0.806264 | 8.949565e-50 | -8.615850e-47 |
| Msa0516000 | Msa1457270 | 0.818209 | 2.208687e-52 | -8.615850e-47 |
| Msa0521260 | Msa1457270 | 0.800933 | 1.142023e-48 | -8.615850e-47 |
| Msa0523140 | Msa1457270 | 0.863617 | 2.190543e-64 | -8.615850e-47 |
| Msa0523150 | Msa1457270 | 0.847784 | 9.286757e-60 | -8.615850e-47 |
| Msa0526520 | Msa1457270 | 0.833815 | 4.293737e-56 | -8.615850e-47 |
| Msa0532750 | Msa1457270 | 0.812290 | 4.568094e-51 | -8.615850e-47 |
| Msa0542330 | Msa1457270 | 0.808085 | 3.683698e-50 | -8.615850e-47 |
| Msa0549550 | Msa1457270 | 0.825522 | 4.478130e-54 | -8.615850e-47 |
| Msa0550980 | Msa1457270 | 0.835059 | 2.091466e-56 | -8.615850e-47 |
| Msa0554770 | Msa1457270 | 0.810167 | 1.318728e-50 | -8.615850e-47 |
| Msa0559440 | Msa1457270 | 0.828405 | 9.156466e-55 | -8.615850e-47 |
| Msa0559640 | Msa1457270 | 0.848431 | 6.156601e-60 | -8.615850e-47 |
| Msa0563230 | Msa1457270 | 0.853225 | 2.750094e-61 | -8.615850e-47 |
| Msa0564000 | Msa1457270 | 0.801942 | 7.097702e-49 | -8.615850e-47 |
| Msa0564580 | Msa1457270 | 0.802747 | 4.843572e-49 | -8.615850e-47 |
| Msa0568780 | Msa1457270 | 0.802435 | 5.618184e-49 | -8.615850e-47 |
| Msa0571900 | Msa1457270 | 0.838962 | 2.104898e-57 | -8.615850e-47 |
| Msa0577290 | Msa1457270 | 0.806243 | 9.044225e-50 | -8.615850e-47 |
| Msa0577960 | Msa1457270 | 0.806510 | 7.942133e-50 | -8.615850e-47 |
| Msa0600500 | Msa1457270 | 0.819560 | 1.089509e-52 | -8.615850e-47 |
| Msa0853150 | Msa1457270 | 0.810341 | 1.209391e-50 | -8.615850e-47 |
| Msa0869320 | Msa1457270 | 0.809071 | 2.267770e-50 | -8.615850e-47 |
| Msa0870220 | Msa1457270 | 0.805047 | 1.612218e-49 | -8.615850e-47 |
| Msa0903460 | Msa1457270 | 0.814801 | 1.280408e-51 | -8.615850e-47 |
| Msa0906100 | Msa1457270 | 0.809608 | 1.739728e-50 | -8.615850e-47 |
| Msa0911440 | Msa1457270 | 0.804982 | 1.662850e-49 | -8.615850e-47 |
| Msa0933050 | Msa1457270 | 0.805690 | 1.181786e-49 | -8.615850e-47 |
| Msa0934290 | Msa1457270 | 0.825083 | 5.687015e-54 | -8.615850e-47 |
| Msa0956600 | Msa1457270 | 0.809956 | 1.464347e-50 | -8.615850e-47 |
| Msa0967250 | Msa1457270 | 0.833510 | 5.115602e-56 | -8.615850e-47 |
| Msa0970940 | Msa1457270 | 0.800131 | 1.664396e-48 | -8.615850e-47 |
| Msa0971780 | Msa1457270 | 0.828583 | 8.291551e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1457270 | MtrunA17_Chr3g0142671 | 88.372 | 43 | 5 | 0 | 1 | 43 | 1 | 43 | 6.72e-20 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTACCTATGACGCATTA+TGG | 0.192228 | tig0038656:-4788 | None:intergenic |
| GATTAGCTTGATTACTTAAA+AGG | 0.201487 | tig0038656:-3786 | None:intergenic |
| GCATGAGTTGGTGGTAATTA+AGG | 0.235955 | tig0038656:-4738 | None:intergenic |
| ACAAACGATTCAACATAAAT+TGG | 0.238695 | tig0038656:-4873 | None:intergenic |
| TAGTCACGTTCTTCAATTTC+CGG | 0.261076 | tig0038656:+4949 | Msa1457270:three_prime_UTR |
| CATAGCAGGGACACATTTCT+TGG | 0.264407 | tig0038656:-4653 | None:intergenic |
| GAAATAGTACTTAAAGAAAA+AGG | 0.271658 | tig0038656:-4851 | None:intergenic |
| TCTCCATCTTGTTCATGCTT+TGG | 0.293177 | tig0038656:+3890 | Msa1457270:CDS |
| GGTGGTTTGGTTGGCATAGC+AGG | 0.303830 | tig0038656:-4667 | None:intergenic |
| TGCGTGCCACCGGGAACTTC+TGG | 0.308001 | tig0038656:+4627 | Msa1457270:CDS |
| GGCACTTGCGTCTGCCTCCA+TGG | 0.330551 | tig0038656:-4689 | None:intergenic |
| CACGGCCGCGCCTCTGCCAC+AGG | 0.395156 | tig0038656:+4574 | Msa1457270:CDS |
| TTCTACCTATGACGCATTAT+GGG | 0.409657 | tig0038656:-4787 | None:intergenic |
| AACCAGACAGAAGCAGTTGA+TGG | 0.415033 | tig0038656:-4095 | None:intergenic |
| GTCTGCCTCCATGGGTGGTT+TGG | 0.427775 | tig0038656:-4680 | None:intergenic |
| GCCTCCATGGGTGGTTTGGT+TGG | 0.435015 | tig0038656:-4676 | None:intergenic |
| AATTTATGTTGAATCGTTTG+TGG | 0.447176 | tig0038656:+4875 | Msa1457270:three_prime_UTR |
| TCGGTGCAACTGCGTGCCAC+CGG | 0.451569 | tig0038656:+4617 | Msa1457270:CDS |
| GATGAATTCAACTCAATTCA+AGG | 0.452504 | tig0038656:-4711 | None:intergenic |
| TTCCACATGCCCTGTGGCAG+AGG | 0.454808 | tig0038656:-4584 | None:intergenic |
| TTAAAGAGAGCCATTGCTAA+TGG | 0.455287 | tig0038656:-3831 | None:intergenic |
| GGCGCGGCCGTGATGATAAA+CGG | 0.465640 | tig0038656:-4563 | None:intergenic |
| TCTTGGTTACCAGAAGTTCC+CGG | 0.467040 | tig0038656:-4636 | None:intergenic |
| TGCTACCCATAATGCGTCAT+AGG | 0.477081 | tig0038656:+4782 | Msa1457270:three_prime_UTR |
| CGCCTCTGCCACAGGGCATG+TGG | 0.480960 | tig0038656:+4582 | Msa1457270:CDS |
| GCACTTGCGTCTGCCTCCAT+GGG | 0.498020 | tig0038656:-4688 | None:intergenic |
| CTTGCGTCTGCCTCCATGGG+TGG | 0.501890 | tig0038656:-4685 | None:intergenic |
| GCTATAGCAATTTAGAAAAG+AGG | 0.503051 | tig0038656:-3809 | None:intergenic |
| AGCATGAACAAGATGGAGAA+TGG | 0.540714 | tig0038656:-3886 | None:intergenic |
| CTATAGCAATTTAGAAAAGA+GGG | 0.541742 | tig0038656:-3808 | None:intergenic |
| GTGGTTTGGTTGGCATAGCA+GGG | 0.546195 | tig0038656:-4666 | None:intergenic |
| CGGTGCAACTGCGTGCCACC+GGG | 0.551251 | tig0038656:+4618 | Msa1457270:CDS |
| TGTTCATGCTTTGGACCAGC+CGG | 0.555470 | tig0038656:+3899 | Msa1457270:CDS |
| GCAATGGAGCATGTGCTGCT+AGG | 0.562822 | tig0038656:+4538 | Msa1457270:CDS |
| AGTTGCATTGCATGAGTTGG+TGG | 0.565582 | tig0038656:-4747 | None:intergenic |
| ATATAAATTTCAGATTGCAA+TGG | 0.566444 | tig0038656:+4522 | Msa1457270:intron |
| GGTCCAAAGCATGAACAAGA+TGG | 0.576917 | tig0038656:-3893 | None:intergenic |
| ATAAGTTGCATTGCATGAGT+TGG | 0.582143 | tig0038656:-4750 | None:intergenic |
| TGAGTTTCTGCGTGTACATG+CGG | 0.582718 | tig0038656:-4035 | None:intergenic |
| ATGAATTCAACTCAATTCAA+GGG | 0.589084 | tig0038656:-4710 | None:intergenic |
| CATGCCCTGTGGCAGAGGCG+CGG | 0.598879 | tig0038656:-4579 | None:intergenic |
| CATGTGGAACTTGCTGCAGT+CGG | 0.613537 | tig0038656:+4598 | Msa1457270:CDS |
| ACGGCCGCGCCTCTGCCACA+GGG | 0.616011 | tig0038656:+4575 | Msa1457270:CDS |
| CTAGGTGCCGTTTATCATCA+CGG | 0.637583 | tig0038656:+4556 | Msa1457270:CDS |
| TATGCCAACCAAACCACCCA+TGG | 0.640986 | tig0038656:+4672 | Msa1457270:CDS |
| ATTGCTATAGCCATTAGCAA+TGG | 0.652040 | tig0038656:+3821 | Msa1457270:exon |
| GCCAACCAAACCACCCATGG+AGG | 0.699460 | tig0038656:+4675 | Msa1457270:CDS |
| AGCAAGTTCCACATGCCCTG+TGG | 0.700479 | tig0038656:-4590 | None:intergenic |
| TCACAATTCAGAGTATACAC+CGG | 0.713855 | tig0038656:-4968 | None:intergenic |
| TGGTTACCAGAAGTTCCCGG+TGG | 0.747138 | tig0038656:-4633 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATTATTTGCTTAAAG+TGG | + | tig0038656:4116-4135 | Msa1457270:intron | 15.0% |
| !! | TGGAAAAAATATATAAAAAC+TGG | + | tig0038656:4136-4155 | Msa1457270:intron | 15.0% |
| !! | AAATTATATGAACTAAACTA+AGG | + | tig0038656:4182-4201 | Msa1457270:intron | 15.0% |
| !!! | TTTTAATTATTTGCTTAAAG+TGG | + | tig0038656:4116-4135 | Msa1457270:intron | 15.0% |
| !! | TGGAAAAAATATATAAAAAC+TGG | + | tig0038656:4136-4155 | Msa1457270:intron | 15.0% |
| !! | AAATTATATGAACTAAACTA+AGG | + | tig0038656:4182-4201 | Msa1457270:intron | 15.0% |
| !!! | TATTTTATAAAGAAAACGCT+TGG | - | tig0038656:3974-3993 | None:intergenic | 20.0% |
| !! | GGATAAAAGATTAGTAAAAA+AGG | + | tig0038656:4295-4314 | Msa1457270:intron | 20.0% |
| !! | ATATAAATTTCAGATTGCAA+TGG | + | tig0038656:4522-4541 | Msa1457270:intron | 20.0% |
| !! | GAAATAGTACTTAAAGAAAA+AGG | - | tig0038656:4854-4873 | None:intergenic | 20.0% |
| !!! | TATTTTATAAAGAAAACGCT+TGG | - | tig0038656:3974-3993 | None:intergenic | 20.0% |
| !! | GGATAAAAGATTAGTAAAAA+AGG | + | tig0038656:4295-4314 | Msa1457270:intron | 20.0% |
| !! | ATATAAATTTCAGATTGCAA+TGG | + | tig0038656:4522-4541 | Msa1457270:intron | 20.0% |
| !! | GAAATAGTACTTAAAGAAAA+AGG | - | tig0038656:4854-4873 | None:intergenic | 20.0% |
| !!! | GATTAGCTTGATTACTTAAA+AGG | - | tig0038656:3789-3808 | None:intergenic | 25.0% |
| ! | CTATAGCAATTTAGAAAAGA+GGG | - | tig0038656:3811-3830 | None:intergenic | 25.0% |
| !! | TTAATTACATGTGTTTTCGT+AGG | + | tig0038656:4010-4029 | Msa1457270:intron | 25.0% |
| ! | TTAACGAATATGTATGCTAA+TGG | + | tig0038656:4273-4292 | Msa1457270:intron | 25.0% |
| ! | TAACGAATATGTATGCTAAT+GGG | + | tig0038656:4274-4293 | Msa1457270:intron | 25.0% |
| ! | ATGAATTCAACTCAATTCAA+GGG | - | tig0038656:4713-4732 | None:intergenic | 25.0% |
| ! | ACAAACGATTCAACATAAAT+TGG | - | tig0038656:4876-4895 | None:intergenic | 25.0% |
| ! | AATTTATGTTGAATCGTTTG+TGG | + | tig0038656:4875-4894 | Msa1457270:three_prime_UTR | 25.0% |
| !!! | GATTAGCTTGATTACTTAAA+AGG | - | tig0038656:3789-3808 | None:intergenic | 25.0% |
| ! | CTATAGCAATTTAGAAAAGA+GGG | - | tig0038656:3811-3830 | None:intergenic | 25.0% |
| !! | TTAATTACATGTGTTTTCGT+AGG | + | tig0038656:4010-4029 | Msa1457270:intron | 25.0% |
| ! | TTAACGAATATGTATGCTAA+TGG | + | tig0038656:4273-4292 | Msa1457270:intron | 25.0% |
| ! | TAACGAATATGTATGCTAAT+GGG | + | tig0038656:4274-4293 | Msa1457270:intron | 25.0% |
| ! | ATGAATTCAACTCAATTCAA+GGG | - | tig0038656:4713-4732 | None:intergenic | 25.0% |
| ! | ACAAACGATTCAACATAAAT+TGG | - | tig0038656:4876-4895 | None:intergenic | 25.0% |
| ! | AATTTATGTTGAATCGTTTG+TGG | + | tig0038656:4875-4894 | Msa1457270:three_prime_UTR | 25.0% |
| GCTATAGCAATTTAGAAAAG+AGG | - | tig0038656:3812-3831 | None:intergenic | 30.0% | |
| !! | CAACAATAGCTTTGAATTAC+CGG | - | tig0038656:3921-3940 | None:intergenic | 30.0% |
| ! | CTACTTCACACACATATTTT+TGG | - | tig0038656:4423-4442 | None:intergenic | 30.0% |
| ! | CTACTTCACACACATATTTT+TGG | - | tig0038656:4423-4442 | None:intergenic | 30.0% |
| GATGAATTCAACTCAATTCA+AGG | - | tig0038656:4714-4733 | None:intergenic | 30.0% | |
| GAATAAAAAGTCTATGTGTG+TGG | + | tig0038656:4807-4826 | Msa1457270:three_prime_UTR | 30.0% | |
| GCTATAGCAATTTAGAAAAG+AGG | - | tig0038656:3812-3831 | None:intergenic | 30.0% | |
| !! | CAACAATAGCTTTGAATTAC+CGG | - | tig0038656:3921-3940 | None:intergenic | 30.0% |
| ! | CTACTTCACACACATATTTT+TGG | - | tig0038656:4423-4442 | None:intergenic | 30.0% |
| ! | CTACTTCACACACATATTTT+TGG | - | tig0038656:4423-4442 | None:intergenic | 30.0% |
| GATGAATTCAACTCAATTCA+AGG | - | tig0038656:4714-4733 | None:intergenic | 30.0% | |
| GAATAAAAAGTCTATGTGTG+TGG | + | tig0038656:4807-4826 | Msa1457270:three_prime_UTR | 30.0% | |
| ATTGCTATAGCCATTAGCAA+TGG | + | tig0038656:3821-3840 | Msa1457270:exon | 35.0% | |
| TTAAAGAGAGCCATTGCTAA+TGG | - | tig0038656:3834-3853 | None:intergenic | 35.0% | |
| ATAAGTTGCATTGCATGAGT+TGG | - | tig0038656:4753-4772 | None:intergenic | 35.0% | |
| TTCTACCTATGACGCATTAT+GGG | - | tig0038656:4790-4809 | None:intergenic | 35.0% | |
| ATTCTACCTATGACGCATTA+TGG | - | tig0038656:4791-4810 | None:intergenic | 35.0% | |
| TAGTCACGTTCTTCAATTTC+CGG | + | tig0038656:4949-4968 | Msa1457270:three_prime_UTR | 35.0% | |
| TCACAATTCAGAGTATACAC+CGG | - | tig0038656:4971-4990 | None:intergenic | 35.0% | |
| ATTGCTATAGCCATTAGCAA+TGG | + | tig0038656:3821-3840 | Msa1457270:exon | 35.0% | |
| TTAAAGAGAGCCATTGCTAA+TGG | - | tig0038656:3834-3853 | None:intergenic | 35.0% | |
| ATAAGTTGCATTGCATGAGT+TGG | - | tig0038656:4753-4772 | None:intergenic | 35.0% | |
| TTCTACCTATGACGCATTAT+GGG | - | tig0038656:4790-4809 | None:intergenic | 35.0% | |
| ATTCTACCTATGACGCATTA+TGG | - | tig0038656:4791-4810 | None:intergenic | 35.0% | |
| TAGTCACGTTCTTCAATTTC+CGG | + | tig0038656:4949-4968 | Msa1457270:three_prime_UTR | 35.0% | |
| TCACAATTCAGAGTATACAC+CGG | - | tig0038656:4971-4990 | None:intergenic | 35.0% | |
| AGCATGAACAAGATGGAGAA+TGG | - | tig0038656:3889-3908 | None:intergenic | 40.0% | |
| TCTCCATCTTGTTCATGCTT+TGG | + | tig0038656:3890-3909 | Msa1457270:CDS | 40.0% | |
| !! | AATAGCTTTGAATTACCGGC+TGG | - | tig0038656:3917-3936 | None:intergenic | 40.0% |
| TAAAGAAAACGCTTGGAGCT+TGG | - | tig0038656:3967-3986 | None:intergenic | 40.0% | |
| ! | GTTTCTTTTCAGCAGCAGAT+AGG | + | tig0038656:4059-4078 | Msa1457270:CDS | 40.0% |
| !! | GCATGAGTTGGTGGTAATTA+AGG | - | tig0038656:4741-4760 | None:intergenic | 40.0% |
| AGCATGAACAAGATGGAGAA+TGG | - | tig0038656:3889-3908 | None:intergenic | 40.0% | |
| TCTCCATCTTGTTCATGCTT+TGG | + | tig0038656:3890-3909 | Msa1457270:CDS | 40.0% | |
| !! | AATAGCTTTGAATTACCGGC+TGG | - | tig0038656:3917-3936 | None:intergenic | 40.0% |
| TAAAGAAAACGCTTGGAGCT+TGG | - | tig0038656:3967-3986 | None:intergenic | 40.0% | |
| ! | GTTTCTTTTCAGCAGCAGAT+AGG | + | tig0038656:4059-4078 | Msa1457270:CDS | 40.0% |
| !! | GCATGAGTTGGTGGTAATTA+AGG | - | tig0038656:4741-4760 | None:intergenic | 40.0% |
| GGTCCAAAGCATGAACAAGA+TGG | - | tig0038656:3896-3915 | None:intergenic | 45.0% | |
| TGAGTTTCTGCGTGTACATG+CGG | - | tig0038656:4038-4057 | None:intergenic | 45.0% | |
| TTCCATCAACTGCTTCTGTC+TGG | + | tig0038656:4093-4112 | Msa1457270:intron | 45.0% | |
| AACCAGACAGAAGCAGTTGA+TGG | - | tig0038656:4098-4117 | None:intergenic | 45.0% | |
| !! | CTAGGTGCCGTTTATCATCA+CGG | + | tig0038656:4556-4575 | Msa1457270:CDS | 45.0% |
| TCTTGGTTACCAGAAGTTCC+CGG | - | tig0038656:4639-4658 | None:intergenic | 45.0% | |
| CATAGCAGGGACACATTTCT+TGG | - | tig0038656:4656-4675 | None:intergenic | 45.0% | |
| ! | AGTTGCATTGCATGAGTTGG+TGG | - | tig0038656:4750-4769 | None:intergenic | 45.0% |
| TGCTACCCATAATGCGTCAT+AGG | + | tig0038656:4782-4801 | Msa1457270:three_prime_UTR | 45.0% | |
| GGTCCAAAGCATGAACAAGA+TGG | - | tig0038656:3896-3915 | None:intergenic | 45.0% | |
| TGAGTTTCTGCGTGTACATG+CGG | - | tig0038656:4038-4057 | None:intergenic | 45.0% | |
| TTCCATCAACTGCTTCTGTC+TGG | + | tig0038656:4093-4112 | Msa1457270:intron | 45.0% | |
| AACCAGACAGAAGCAGTTGA+TGG | - | tig0038656:4098-4117 | None:intergenic | 45.0% | |
| !! | CTAGGTGCCGTTTATCATCA+CGG | + | tig0038656:4556-4575 | Msa1457270:CDS | 45.0% |
| TCTTGGTTACCAGAAGTTCC+CGG | - | tig0038656:4639-4658 | None:intergenic | 45.0% | |
| CATAGCAGGGACACATTTCT+TGG | - | tig0038656:4656-4675 | None:intergenic | 45.0% | |
| ! | AGTTGCATTGCATGAGTTGG+TGG | - | tig0038656:4750-4769 | None:intergenic | 45.0% |
| TGCTACCCATAATGCGTCAT+AGG | + | tig0038656:4782-4801 | Msa1457270:three_prime_UTR | 45.0% | |
| !! | GTAATTAAATTAAATTAAAT+TGG | - | tig0038656:3998-4017 | None:intergenic | 5.0% |
| !! | GTAATTAAATTAAATTAAAT+TGG | - | tig0038656:3998-4017 | None:intergenic | 5.0% |
| ! | TGTTCATGCTTTGGACCAGC+CGG | + | tig0038656:3899-3918 | Msa1457270:CDS | 50.0% |
| !! | CATGTGGAACTTGCTGCAGT+CGG | + | tig0038656:4598-4617 | Msa1457270:CDS | 50.0% |
| !! | GTGGTTTGGTTGGCATAGCA+GGG | - | tig0038656:4669-4688 | None:intergenic | 50.0% |
| TATGCCAACCAAACCACCCA+TGG | + | tig0038656:4672-4691 | Msa1457270:CDS | 50.0% | |
| ! | TGTTCATGCTTTGGACCAGC+CGG | + | tig0038656:3899-3918 | Msa1457270:CDS | 50.0% |
| !! | CATGTGGAACTTGCTGCAGT+CGG | + | tig0038656:4598-4617 | Msa1457270:CDS | 50.0% |
| !! | GTGGTTTGGTTGGCATAGCA+GGG | - | tig0038656:4669-4688 | None:intergenic | 50.0% |
| TATGCCAACCAAACCACCCA+TGG | + | tig0038656:4672-4691 | Msa1457270:CDS | 50.0% | |
| ! | GCAATGGAGCATGTGCTGCT+AGG | + | tig0038656:4538-4557 | Msa1457270:CDS | 55.0% |
| AGCAAGTTCCACATGCCCTG+TGG | - | tig0038656:4593-4612 | None:intergenic | 55.0% | |
| TGGTTACCAGAAGTTCCCGG+TGG | - | tig0038656:4636-4655 | None:intergenic | 55.0% | |
| !! | GGTGGTTTGGTTGGCATAGC+AGG | - | tig0038656:4670-4689 | None:intergenic | 55.0% |
| ! | GCAATGGAGCATGTGCTGCT+AGG | + | tig0038656:4538-4557 | Msa1457270:CDS | 55.0% |
| AGCAAGTTCCACATGCCCTG+TGG | - | tig0038656:4593-4612 | None:intergenic | 55.0% | |
| TGGTTACCAGAAGTTCCCGG+TGG | - | tig0038656:4636-4655 | None:intergenic | 55.0% | |
| !! | GGTGGTTTGGTTGGCATAGC+AGG | - | tig0038656:4670-4689 | None:intergenic | 55.0% |
| GGCGCGGCCGTGATGATAAA+CGG | - | tig0038656:4566-4585 | None:intergenic | 60.0% | |
| TTCCACATGCCCTGTGGCAG+AGG | - | tig0038656:4587-4606 | None:intergenic | 60.0% | |
| GCCAACCAAACCACCCATGG+AGG | + | tig0038656:4675-4694 | Msa1457270:CDS | 60.0% | |
| !! | GCCTCCATGGGTGGTTTGGT+TGG | - | tig0038656:4679-4698 | None:intergenic | 60.0% |
| GTCTGCCTCCATGGGTGGTT+TGG | - | tig0038656:4683-4702 | None:intergenic | 60.0% | |
| GCACTTGCGTCTGCCTCCAT+GGG | - | tig0038656:4691-4710 | None:intergenic | 60.0% | |
| GGCGCGGCCGTGATGATAAA+CGG | - | tig0038656:4566-4585 | None:intergenic | 60.0% | |
| TTCCACATGCCCTGTGGCAG+AGG | - | tig0038656:4587-4606 | None:intergenic | 60.0% | |
| GCCAACCAAACCACCCATGG+AGG | + | tig0038656:4675-4694 | Msa1457270:CDS | 60.0% | |
| !! | GCCTCCATGGGTGGTTTGGT+TGG | - | tig0038656:4679-4698 | None:intergenic | 60.0% |
| GTCTGCCTCCATGGGTGGTT+TGG | - | tig0038656:4683-4702 | None:intergenic | 60.0% | |
| GCACTTGCGTCTGCCTCCAT+GGG | - | tig0038656:4691-4710 | None:intergenic | 60.0% | |
| TCGGTGCAACTGCGTGCCAC+CGG | + | tig0038656:4617-4636 | Msa1457270:CDS | 65.0% | |
| TGCGTGCCACCGGGAACTTC+TGG | + | tig0038656:4627-4646 | Msa1457270:CDS | 65.0% | |
| CTTGCGTCTGCCTCCATGGG+TGG | - | tig0038656:4688-4707 | None:intergenic | 65.0% | |
| GGCACTTGCGTCTGCCTCCA+TGG | - | tig0038656:4692-4711 | None:intergenic | 65.0% | |
| TCGGTGCAACTGCGTGCCAC+CGG | + | tig0038656:4617-4636 | Msa1457270:CDS | 65.0% | |
| TGCGTGCCACCGGGAACTTC+TGG | + | tig0038656:4627-4646 | Msa1457270:CDS | 65.0% | |
| CTTGCGTCTGCCTCCATGGG+TGG | - | tig0038656:4688-4707 | None:intergenic | 65.0% | |
| GGCACTTGCGTCTGCCTCCA+TGG | - | tig0038656:4692-4711 | None:intergenic | 65.0% | |
| CATGCCCTGTGGCAGAGGCG+CGG | - | tig0038656:4582-4601 | None:intergenic | 70.0% | |
| CGCCTCTGCCACAGGGCATG+TGG | + | tig0038656:4582-4601 | Msa1457270:CDS | 70.0% | |
| CGGTGCAACTGCGTGCCACC+GGG | + | tig0038656:4618-4637 | Msa1457270:CDS | 70.0% | |
| CATGCCCTGTGGCAGAGGCG+CGG | - | tig0038656:4582-4601 | None:intergenic | 70.0% | |
| CGCCTCTGCCACAGGGCATG+TGG | + | tig0038656:4582-4601 | Msa1457270:CDS | 70.0% | |
| CGGTGCAACTGCGTGCCACC+GGG | + | tig0038656:4618-4637 | Msa1457270:CDS | 70.0% | |
| ACGGCCGCGCCTCTGCCACA+GGG | + | tig0038656:4575-4594 | Msa1457270:CDS | 75.0% | |
| ACGGCCGCGCCTCTGCCACA+GGG | + | tig0038656:4575-4594 | Msa1457270:CDS | 75.0% | |
| ! | CACGGCCGCGCCTCTGCCAC+AGG | + | tig0038656:4574-4593 | Msa1457270:CDS | 80.0% |
| ! | CACGGCCGCGCCTCTGCCAC+AGG | + | tig0038656:4574-4593 | Msa1457270:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0038656 | gene | 3778 | 5013 | 3778 | ID=Msa1457270;Name=Msa1457270 |
| tig0038656 | mRNA | 3778 | 5013 | 3778 | ID=Msa1457270-mRNA-1;Parent=Msa1457270;Name=Msa1457270-mRNA-1;_AED=0.10;_eAED=0.10;_QI=62|0.5|0.66|1|1|1|3|287|116 |
| tig0038656 | exon | 3778 | 3920 | 3778 | ID=Msa1457270-mRNA-1:exon:21065;Parent=Msa1457270-mRNA-1 |
| tig0038656 | exon | 4032 | 4109 | 4032 | ID=Msa1457270-mRNA-1:exon:21066;Parent=Msa1457270-mRNA-1 |
| tig0038656 | exon | 4535 | 5013 | 4535 | ID=Msa1457270-mRNA-1:exon:21067;Parent=Msa1457270-mRNA-1 |
| tig0038656 | five_prime_UTR | 3778 | 3839 | 3778 | ID=Msa1457270-mRNA-1:five_prime_utr;Parent=Msa1457270-mRNA-1 |
| tig0038656 | CDS | 3840 | 3920 | 3840 | ID=Msa1457270-mRNA-1:cds;Parent=Msa1457270-mRNA-1 |
| tig0038656 | CDS | 4032 | 4109 | 4032 | ID=Msa1457270-mRNA-1:cds;Parent=Msa1457270-mRNA-1 |
| tig0038656 | CDS | 4535 | 4726 | 4535 | ID=Msa1457270-mRNA-1:cds;Parent=Msa1457270-mRNA-1 |
| tig0038656 | three_prime_UTR | 4727 | 5013 | 4727 | ID=Msa1457270-mRNA-1:three_prime_utr;Parent=Msa1457270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
