AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0024490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0024490 MtrunA17_Chr1g0178601 96.629 267 9 0 1 267 1 267 0.0 538
Msa0024490 MtrunA17_Chr1g0178591 85.338 266 39 0 1 266 1 266 1.98e-172 476
Msa0024490 MtrunA17_Chr1g0178541 84.672 137 21 0 130 266 44 180 3.62e-83 247
Msa0024490 MtrunA17_Chr1g0180371 41.494 241 130 4 28 263 39 273 4.71e-61 194
Msa0024490 MtrunA17_Chr4g0028741 39.483 271 151 7 2 265 6 270 1.27e-59 190
Msa0024490 MtrunA17_Chr1g0180331 36.122 263 158 4 9 266 19 276 1.33e-59 191
Msa0024490 MtrunA17_Chr7g0257091 39.179 268 143 5 10 267 8 265 2.48e-57 184
Msa0024490 MtrunA17_Chr7g0264911 44.186 215 109 4 55 264 2 210 7.61e-57 181
Msa0024490 MtrunA17_Chr4g0028711 38.559 236 139 2 27 262 37 266 5.50e-54 176
Msa0024490 MtrunA17_Chr4g0028721 38.028 213 126 2 27 239 11 217 1.13e-46 156
Msa0024490 MtrunA17_Chr1g0178561 90.476 63 6 0 67 129 1 63 1.16e-37 127
Msa0024490 MtrunA17_Chr4g0028731 39.286 140 84 1 27 166 11 149 9.88e-27 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0024490 AT3G52720.3 43.333 270 149 2 1 267 1 269 2.08e-85 256
Msa0024490 AT3G52720.4 43.333 270 149 2 1 267 1 269 2.08e-85 256
Msa0024490 AT3G52720.1 43.333 270 149 2 1 267 1 269 2.08e-85 256
Msa0024490 AT3G52720.2 41.485 229 130 2 1 226 1 228 3.88e-65 203
Msa0024490 AT2G28210.1 39.179 268 148 6 5 263 10 271 3.53e-62 197
Msa0024490 AT1G08080.1 40.084 237 136 2 27 263 41 271 2.99e-61 195
Msa0024490 AT1G08065.1 36.226 265 155 4 7 263 10 268 4.49e-55 179
Msa0024490 AT4G20990.1 37.826 230 133 4 35 264 45 264 8.36e-55 178
Msa0024490 AT5G04180.1 39.062 256 143 6 9 258 5 253 1.10e-54 178
Msa0024490 AT4G21000.1 36.239 218 126 5 9 226 23 227 2.38e-43 148
Msa0024490 AT5G56330.1 33.750 240 110 5 28 263 140 334 8.57e-36 131
Msa0024490 AT5G56330.2 40.120 167 91 4 26 184 138 303 3.21e-32 120
Msa0024490 AT2G28210.2 40.602 133 70 4 5 128 10 142 1.20e-24 96.7

Find 90 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCAATATTATGGTTAATT+TGG 0.121058 1_1:+46902515 None:intergenic
TATTGCAGCCCTCTACAATT+TGG 0.195816 1_1:-46900367 Msa0024490:CDS
AAAGGTGCCAAGGGCAATTT+TGG 0.203315 1_1:+46900051 None:intergenic
GTTGGAGATATTAACATAAA+TGG 0.232737 1_1:-46901681 Msa0024490:CDS
AAGCCAAAGTTGCAATAAAA+AGG 0.281425 1_1:+46902358 None:intergenic
ATTGAGAGTTCTCTATTCTA+AGG 0.294436 1_1:-46899485 Msa0024490:three_prime_UTR
GTCCAAATTAACCATAATAT+TGG 0.297124 1_1:-46902517 Msa0024490:five_prime_UTR
TGTCTAAGGATTTCAATTCT+TGG 0.302181 1_1:+46902042 None:intergenic
GGATGGTGGATGAATTTGTT+GGG 0.326789 1_1:+46902563 None:intergenic
AGGAACGTAGTTTCTGTCTA+AGG 0.328854 1_1:+46902028 None:intergenic
ATGTAGAGGAAATAAATAAA+AGG 0.341861 1_1:-46900027 Msa0024490:CDS
TTAACAATCAATTCAACATT+GGG 0.346308 1_1:-46901989 Msa0024490:CDS
CAACATATCTATAATATCTA+TGG 0.348697 1_1:+46900002 None:intergenic
GAATCCCATGTCTCTATTTG+TGG 0.358258 1_1:+46899624 None:intergenic
TGTGTTCTTCTCCAATATTA+TGG 0.361637 1_1:+46902506 None:intergenic
TAATCATATCCCTCAAATTA+TGG 0.363011 1_1:-46899392 Msa0024490:three_prime_UTR
TAGATAATAGCTATTCAAAA+TGG 0.372426 1_1:-46902403 Msa0024490:exon
ACTCATTGAAACAACTTCAT+TGG 0.373527 1_1:-46901650 Msa0024490:CDS
ATTGCAGCCCTCTACAATTT+GGG 0.374926 1_1:-46900366 Msa0024490:CDS
TTTAGTTATATTGGATCAAA+TGG 0.383988 1_1:-46902164 Msa0024490:CDS
CATGCAAAGAAGGTGTCATT+TGG 0.384098 1_1:-46899961 Msa0024490:CDS
TTAACAAGTGTGGCATTTGT+AGG 0.388120 1_1:+46902008 None:intergenic
AACTCTACCTTGGAGATTAG+AGG 0.392300 1_1:+46900333 None:intergenic
CTCAGGGTTCCCCACTTCTC+AGG 0.400725 1_1:+46902140 None:intergenic
TTTGAGGATATGCTCAACTT+TGG 0.407354 1_1:+46902542 None:intergenic
TGGATGGTGGATGAATTTGT+TGG 0.409350 1_1:+46902562 None:intergenic
GGCATGCACCTGCAGAGCAC+AGG 0.420992 1_1:-46901629 Msa0024490:CDS
CCATGAGCCCTGTGCTCTGC+AGG 0.431436 1_1:+46901621 None:intergenic
AGCATTTAGCAGATTCTGTT+GGG 0.437938 1_1:+46902653 None:intergenic
ACCTTGGAGATTAGAGGATC+AGG 0.444518 1_1:+46900339 None:intergenic
GGTGTCATTTGGAACATCAT+TGG 0.445336 1_1:-46899950 Msa0024490:CDS
TTTGAGCATGCTGCGAAAGA+TGG 0.454274 1_1:+46902116 None:intergenic
GTTGCCCACACGATTCTCAT+TGG 0.455045 1_1:+46900081 None:intergenic
TTTATGATAAAGCTAGGTAC+TGG 0.458535 1_1:-46899567 Msa0024490:three_prime_UTR
GAAGTGGCCTTGCATTGTGC+TGG 0.462504 1_1:+46899684 None:intergenic
TATCTTCTGTGAGGTGAACT+AGG 0.462726 1_1:+46900406 None:intergenic
GTTAACAATCAATTCAACAT+TGG 0.466983 1_1:-46901990 Msa0024490:CDS
TCTTTCGCAGCATGCTCAAA+TGG 0.467564 1_1:-46902113 Msa0024490:CDS
TAGTAAAGACCATAATTTGA+GGG 0.491163 1_1:+46899383 None:intergenic
CAAATGACACCTTCTTTGCA+TGG 0.493029 1_1:+46899962 None:intergenic
CATAGATATTATAGATATGT+TGG 0.494664 1_1:-46900001 Msa0024490:CDS
GAGCATTTAGCAGATTCTGT+TGG 0.502428 1_1:+46902652 None:intergenic
CCTGCAGAGCACAGGGCTCA+TGG 0.505272 1_1:-46901621 Msa0024490:CDS
CGACCATTCAATGGCTGAAG+TGG 0.505749 1_1:+46899668 None:intergenic
CCTTGGCACCTTTGATGTAG+AGG 0.509605 1_1:-46900041 Msa0024490:CDS
GATTGAAAAGTAAATCTTCA+AGG 0.517075 1_1:+46902380 None:intergenic
TATTCTAAGGATGTTCTACT+AGG 0.517315 1_1:-46899472 Msa0024490:three_prime_UTR
ATTTATTTCCTCTACATCAA+AGG 0.518490 1_1:+46900033 None:intergenic
GATGGTGGATGAATTTGTTG+GGG 0.531971 1_1:+46902564 None:intergenic
ATGCTGCGAAAGATGGACTC+AGG 0.532029 1_1:+46902123 None:intergenic
AGGCCACTTCAGCCATTGAA+TGG 0.533333 1_1:-46899671 Msa0024490:CDS
ACTACCCCTCCATGCAAAGA+AGG 0.533789 1_1:-46899971 Msa0024490:CDS
TTTGTCATTACAAGATCCAC+TGG 0.534140 1_1:+46902077 None:intergenic
ATCAAATGGTCCTGAGAAGT+GGG 0.537018 1_1:-46902150 Msa0024490:CDS
AGGATATGCTCAACTTTGGA+TGG 0.539841 1_1:+46902546 None:intergenic
AGAATCTGCTAAATGCTCCT+TGG 0.543057 1_1:-46902647 Msa0024490:five_prime_UTR
GCATGCACCTGCAGAGCACA+GGG 0.546819 1_1:-46901628 Msa0024490:CDS
TGACACCTTCTTTGCATGGA+GGG 0.546979 1_1:+46899966 None:intergenic
GATCAAATGGTCCTGAGAAG+TGG 0.550795 1_1:-46902151 Msa0024490:CDS
CTCTACATCAAAGGTGCCAA+GGG 0.556030 1_1:+46900042 None:intergenic
ATAGGAAAAGTATGCTGCCA+AGG 0.556649 1_1:+46902630 None:intergenic
TTCCAAATACAGACATGAAG+CGG 0.562427 1_1:-46900436 Msa0024490:intron
AAAGATGCCAAAATTGCCCT+TGG 0.564204 1_1:-46900058 Msa0024490:CDS
TTTAGAGGGATACTAACATC+AGG 0.569976 1_1:+46899535 None:intergenic
TTAGTAAAGACCATAATTTG+AGG 0.570709 1_1:+46899382 None:intergenic
CCTCTACATCAAAGGTGCCA+AGG 0.575134 1_1:+46900041 None:intergenic
GACACCTTCTTTGCATGGAG+GGG 0.587126 1_1:+46899967 None:intergenic
TTGTAGAACATATATAGTGA+TGG 0.595013 1_1:+46902472 None:intergenic
TAGAGTTCCAGCACAATGCA+AGG 0.599993 1_1:-46899691 Msa0024490:CDS
TCCTGATCCTCTAATCTCCA+AGG 0.601948 1_1:-46900340 Msa0024490:intron
TGTTATTGTTATCTTCTGTG+AGG 0.604430 1_1:+46900397 None:intergenic
AACTACCACAAATAGAGACA+TGG 0.605284 1_1:-46899629 Msa0024490:exon
CATATATAGTGATGGTTGTG+TGG 0.611812 1_1:+46902480 None:intergenic
CAGGATCACCCAAATTGTAG+AGG 0.616295 1_1:+46900358 None:intergenic
TGCTGCGAAAGATGGACTCA+GGG 0.618016 1_1:+46902124 None:intergenic
GAATTGATTGTTAACAAGTG+TGG 0.624710 1_1:+46901998 None:intergenic
CATTTGGAACATCATTGGCA+AGG 0.625922 1_1:-46899945 Msa0024490:intron
GGGGTTACTTACAAGATCAG+TGG 0.626201 1_1:+46902583 None:intergenic
TAACAATCAATTCAACATTG+GGG 0.628916 1_1:-46901988 Msa0024490:intron
AGGATCACCCAAATTGTAGA+GGG 0.637120 1_1:+46900359 None:intergenic
ACTACCACAAATAGAGACAT+GGG 0.637186 1_1:-46899628 Msa0024490:exon
TGGAAAAGCACAGAGTCCAG+TGG 0.644960 1_1:-46902093 Msa0024490:CDS
ATATGCTCAACTTTGGATGG+TGG 0.647963 1_1:+46902549 None:intergenic
ATGACACCTTCTTTGCATGG+AGG 0.651112 1_1:+46899965 None:intergenic
ATATATGTTCTACAAAGCTG+AGG 0.652452 1_1:-46902464 Msa0024490:five_prime_UTR
GCTAGCCAATGAGAATCGTG+TGG 0.657074 1_1:-46900086 Msa0024490:CDS
CTAGCCAATGAGAATCGTGT+GGG 0.675900 1_1:-46900085 Msa0024490:CDS
CTTCTGTGAGGTGAACTAGG+TGG 0.676418 1_1:+46900409 None:intergenic
TCAAATGGTCCTGAGAAGTG+GGG 0.707898 1_1:-46902149 Msa0024490:CDS
TGCTGGAACTCTACACCCAG+TGG 0.713140 1_1:+46899701 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAAATTATTATTATTAGT+TGG - chr1_1:46900023-46900042 Msa0024490:CDS 10.0%
!! AAAAATTAAACTAGTAATAT+TGG - chr1_1:46900548-46900567 Msa0024490:intron 10.0%
!! TATTACTTTACTATTAAAAA+AGG - chr1_1:46901008-46901027 Msa0024490:intron 10.0%
!! TAATTCAACAAAATATTTAA+AGG - chr1_1:46901052-46901071 Msa0024490:intron 10.0%
!! TAATTTAATATATTAGTACA+AGG - chr1_1:46901288-46901307 Msa0024490:intron 10.0%
!! TAAATGTAGAATTTATTATT+TGG - chr1_1:46901683-46901702 Msa0024490:CDS 10.0%
!!! ATTTTATTATATATCATATG+AGG + chr1_1:46902519-46902538 None:intergenic 10.0%
!!! TAATAGTATACTATTTTTTT+TGG + chr1_1:46902562-46902581 None:intergenic 10.0%
!!! TTTTTTTTTTATGGTAGATT+TGG - chr1_1:46899659-46899678 Msa0024490:CDS 15.0%
!!! TTGGTTAATTTTAGTTATAT+TGG - chr1_1:46899678-46899697 Msa0024490:CDS 15.0%
!! ATTTGAAAAGAAAAAATGAT+TGG + chr1_1:46900010-46900029 None:intergenic 15.0%
!!! ATTTTTTATAAACAGAAAGA+GGG - chr1_1:46900843-46900862 Msa0024490:intron 15.0%
!! AAATATTTATAAGCATCATT+TGG + chr1_1:46900988-46901007 None:intergenic 15.0%
!!! TCAATTTTATAAAACCAATT+CGG + chr1_1:46901979-46901998 None:intergenic 15.0%
!!! AATATAAAGTAATTTGTGTT+TGG - chr1_1:46902018-46902037 Msa0024490:CDS 15.0%
!!! ATATAAAGTAATTTGTGTTT+GGG - chr1_1:46902019-46902038 Msa0024490:CDS 15.0%
!!! TTTGTATTAATTTTTGCTTT+TGG - chr1_1:46902053-46902072 Msa0024490:CDS 15.0%
!! TAAAAACTACATTTAATTCA+TGG + chr1_1:46902258-46902277 None:intergenic 15.0%
!!! ATACTTTTCCTATATAGAAA+AGG - chr1_1:46899231-46899250 Msa0024490:three_prime_UTR 20.0%
!! TAGATAATAGCTATTCAAAA+TGG - chr1_1:46899448-46899467 Msa0024490:three_prime_UTR 20.0%
!! TTTAGTTATATTGGATCAAA+TGG - chr1_1:46899687-46899706 Msa0024490:CDS 20.0%
!! TTAACAATCAATTCAACATT+GGG - chr1_1:46899862-46899881 Msa0024490:intron 20.0%
!!! AAAATATAGGTACATTTTGA+AGG - chr1_1:46900143-46900162 Msa0024490:intron 20.0%
!! TAATTTGAATTAAGGATCAA+AGG + chr1_1:46900365-46900384 None:intergenic 20.0%
!! AGATCAACTAATTTGAATTA+AGG + chr1_1:46900373-46900392 None:intergenic 20.0%
!! AAGAAAAATATATTGTCTCA+TGG - chr1_1:46900517-46900536 Msa0024490:intron 20.0%
!!! AAAAAATGAAAAGTACTTCT+TGG - chr1_1:46900602-46900621 Msa0024490:intron 20.0%
!! TGTAATTGCTATAACAATTA+TGG + chr1_1:46900697-46900716 None:intergenic 20.0%
!! TTAGAAAAATCTGCTTATTA+TGG - chr1_1:46900756-46900775 Msa0024490:intron 20.0%
!!! TTATTATGGAATAGAACTTT+TGG - chr1_1:46900770-46900789 Msa0024490:intron 20.0%
!!! CATTTTTTATAAACAGAAAG+AGG - chr1_1:46900842-46900861 Msa0024490:intron 20.0%
!!! TTTTTTATAAACAGAAAGAG+GGG - chr1_1:46900844-46900863 Msa0024490:intron 20.0%
!!! TTCTAAAAAAAATGCAACAA+TGG + chr1_1:46900964-46900983 None:intergenic 20.0%
!! CAACAAAATATTTAAAGGAT+AGG - chr1_1:46901057-46901076 Msa0024490:intron 20.0%
!! AGTTATAAAAATGGTTTGAA+AGG + chr1_1:46901114-46901133 None:intergenic 20.0%
!!! TTCATGACTAGTTATAAAAA+TGG + chr1_1:46901123-46901142 None:intergenic 20.0%
!! TTTATTCCTTTACAAAAATC+TGG + chr1_1:46901226-46901245 None:intergenic 20.0%
!! TAATATATTAGTACAAGGAA+TGG - chr1_1:46901293-46901312 Msa0024490:intron 20.0%
!! AATATATTAGTACAAGGAAT+GGG - chr1_1:46901294-46901313 Msa0024490:intron 20.0%
!!! GTTCAATAGATTTTTATTAG+AGG + chr1_1:46901352-46901371 None:intergenic 20.0%
!!! ACTAACATTGTAATTTGTAA+GGG + chr1_1:46901374-46901393 None:intergenic 20.0%
!!! AACTAACATTGTAATTTGTA+AGG + chr1_1:46901375-46901394 None:intergenic 20.0%
!! ATGTAGAGGAAATAAATAAA+AGG - chr1_1:46901824-46901843 Msa0024490:intron 20.0%
!! CAACATATCTATAATATCTA+TGG + chr1_1:46901852-46901871 None:intergenic 20.0%
!! CATAGATATTATAGATATGT+TGG - chr1_1:46901850-46901869 Msa0024490:intron 20.0%
!!! TAAAAGTTTTAGTTGTTCTT+TGG + chr1_1:46902124-46902143 None:intergenic 20.0%
!!! AGAACAACTAAAACTTTTAA+AGG - chr1_1:46902125-46902144 Msa0024490:CDS 20.0%
!!! ACAAATTTTATGATAAAGCT+AGG - chr1_1:46902278-46902297 Msa0024490:intron 20.0%
!!! CATTATTTTTTCAGTTTAGA+GGG + chr1_1:46902333-46902352 None:intergenic 20.0%
!!! ACATTATTTTTTCAGTTTAG+AGG + chr1_1:46902334-46902353 None:intergenic 20.0%
!! CTAAACTGAAAAAATAATGT+AGG - chr1_1:46902334-46902353 Msa0024490:intron 20.0%
!! AAAAAAGAAAAAAAACAGAG+TGG + chr1_1:46902429-46902448 None:intergenic 20.0%
!! AACAAAAAAAATGTAGCATT+TGG - chr1_1:46902654-46902673 Msa0024490:five_prime_UTR 20.0%
! GTCCAAATTAACCATAATAT+TGG - chr1_1:46899334-46899353 Msa0024490:three_prime_UTR 25.0%
! CTCCAATATTATGGTTAATT+TGG + chr1_1:46899339-46899358 None:intergenic 25.0%
! TTGTAGAACATATATAGTGA+TGG + chr1_1:46899382-46899401 None:intergenic 25.0%
! GATTGAAAAGTAAATCTTCA+AGG + chr1_1:46899474-46899493 None:intergenic 25.0%
!! AATCCTTTTTATTGCAACTT+TGG - chr1_1:46899490-46899509 Msa0024490:three_prime_UTR 25.0%
! GTTAACAATCAATTCAACAT+TGG - chr1_1:46899861-46899880 Msa0024490:intron 25.0%
! TAACAATCAATTCAACATTG+GGG - chr1_1:46899863-46899882 Msa0024490:intron 25.0%
!! CTTAAAAAGTGTAAAAATCG+TGG - chr1_1:46899912-46899931 Msa0024490:intron 25.0%
! AGTAGTATATAGTTATGATG+GGG + chr1_1:46899941-46899960 None:intergenic 25.0%
! CAGTAGTATATAGTTATGAT+GGG + chr1_1:46899942-46899961 None:intergenic 25.0%
! TCAGTAGTATATAGTTATGA+TGG + chr1_1:46899943-46899962 None:intergenic 25.0%
!! ATTATTATTAGTTGGTGTCT+AGG - chr1_1:46900031-46900050 Msa0024490:CDS 25.0%
! ACAAAGTATACAAATTGTTG+AGG - chr1_1:46900084-46900103 Msa0024490:CDS 25.0%
! ATACAAATTGTTGAGGAAAA+TGG - chr1_1:46900091-46900110 Msa0024490:CDS 25.0%
! GTTGGAGATATTAACATAAA+TGG - chr1_1:46900170-46900189 Msa0024490:intron 25.0%
! TAACAGAAAAGGAATGTATT+GGG + chr1_1:46900314-46900333 None:intergenic 25.0%
! ATAACAGAAAAGGAATGTAT+TGG + chr1_1:46900315-46900334 None:intergenic 25.0%
! TGAGTTTCACAATAATCAAT+AGG + chr1_1:46900890-46900909 None:intergenic 25.0%
!!! GGTCAAGAAATTGTTTTATA+TGG - chr1_1:46901029-46901048 Msa0024490:intron 25.0%
! CAAAATATTTAAAGGATAGG+AGG - chr1_1:46901060-46901079 Msa0024490:intron 25.0%
!! TTAGTTCCAGATTTTTGTAA+AGG - chr1_1:46901217-46901236 Msa0024490:intron 25.0%
! TAGATGTAGAATATACGATA+TGG + chr1_1:46901270-46901289 None:intergenic 25.0%
!!! TAGATTTTTATTAGAGGTGT+AGG + chr1_1:46901346-46901365 None:intergenic 25.0%
! AACGTTCATATTTGATATCA+CGG - chr1_1:46901561-46901580 Msa0024490:intron 25.0%
! ATTTATTTCCTCTACATCAA+AGG + chr1_1:46901821-46901840 None:intergenic 25.0%
! TAATCATATCCCTCAAATTA+TGG - chr1_1:46902459-46902478 Msa0024490:five_prime_UTR 25.0%
! TAGTAAAGACCATAATTTGA+GGG + chr1_1:46902471-46902490 None:intergenic 25.0%
! TTAGTAAAGACCATAATTTG+AGG + chr1_1:46902472-46902491 None:intergenic 25.0%
! AATGCTGTCCTTTTCTATAT+AGG + chr1_1:46899242-46899261 None:intergenic 30.0%
!! TGGTTAATTTGGACATTTTG+AGG + chr1_1:46899328-46899347 None:intergenic 30.0%
TGTGTTCTTCTCCAATATTA+TGG + chr1_1:46899348-46899367 None:intergenic 30.0%
ATATATGTTCTACAAAGCTG+AGG - chr1_1:46899387-46899406 Msa0024490:three_prime_UTR 30.0%
AAGCCAAAGTTGCAATAAAA+AGG + chr1_1:46899496-46899515 None:intergenic 30.0%
TGTCTAAGGATTTCAATTCT+TGG + chr1_1:46899812-46899831 None:intergenic 30.0%
GAATTGATTGTTAACAAGTG+TGG + chr1_1:46899856-46899875 None:intergenic 30.0%
GGTTGAGTCTGTTAAAATAT+AGG - chr1_1:46900130-46900149 Msa0024490:intron 30.0%
!! GTACATTTTGAAGGAAAAGT+TGG - chr1_1:46900152-46900171 Msa0024490:intron 30.0%
ACTCATTGAAACAACTTCAT+TGG - chr1_1:46900201-46900220 Msa0024490:intron 30.0%
GGAACAAATATAGAAGAAAG+GGG + chr1_1:46900268-46900287 None:intergenic 30.0%
GGGAACAAATATAGAAGAAA+GGG + chr1_1:46900269-46900288 None:intergenic 30.0%
AGGGAACAAATATAGAAGAA+AGG + chr1_1:46900270-46900289 None:intergenic 30.0%
AAAGGAATGTATTGGGATTT+GGG + chr1_1:46900307-46900326 None:intergenic 30.0%
AAAAGGAATGTATTGGGATT+TGG + chr1_1:46900308-46900327 None:intergenic 30.0%
TCAAATGTGGATAACAGAAA+AGG + chr1_1:46900325-46900344 None:intergenic 30.0%
ATTGCTATAACAATTATGGC+TGG + chr1_1:46900693-46900712 None:intergenic 30.0%
CCAGAATAAATCAGAATACA+TGG + chr1_1:46901323-46901342 None:intergenic 30.0%
CCATGTATTCTGATTTATTC+TGG - chr1_1:46901320-46901339 Msa0024490:intron 30.0%
TGTTATTGTTATCTTCTGTG+AGG + chr1_1:46901457-46901476 None:intergenic 30.0%
TGACTTAAATAACTCTACCT+TGG + chr1_1:46901531-46901550 None:intergenic 30.0%
GTATAGCTACTAATTACATG+TGG - chr1_1:46901709-46901728 Msa0024490:intron 30.0%
AGGTACTAAGTTTAATCAGT+TGG - chr1_1:46901926-46901945 Msa0024490:intron 30.0%
AGTTTAATCAGTTGGTTATG+CGG - chr1_1:46901934-46901953 Msa0024490:intron 30.0%
!! GAAATTGATTTTGACCGAAT+TGG - chr1_1:46901962-46901981 Msa0024490:intron 30.0%
TTTATGATAAAGCTAGGTAC+TGG - chr1_1:46902284-46902303 Msa0024490:intron 30.0%
ATTGAGAGTTCTCTATTCTA+AGG - chr1_1:46902366-46902385 Msa0024490:CDS 30.0%
! TATTCTAAGGATGTTCTACT+AGG - chr1_1:46902379-46902398 Msa0024490:CDS 30.0%
AGCATTTAGCAGATTCTGTT+GGG + chr1_1:46899201-46899220 None:intergenic 35.0%
TTTGAGGATATGCTCAACTT+TGG + chr1_1:46899312-46899331 None:intergenic 35.0%
CATATATAGTGATGGTTGTG+TGG + chr1_1:46899374-46899393 None:intergenic 35.0%
TTTGTCATTACAAGATCCAC+TGG + chr1_1:46899777-46899796 None:intergenic 35.0%
TTAACAAGTGTGGCATTTGT+AGG + chr1_1:46899846-46899865 None:intergenic 35.0%
! AATGGTGATGTCAACTGATA+TGG - chr1_1:46900109-46900128 Msa0024490:CDS 35.0%
TCCAAACCCTCTAATTACTT+CGG - chr1_1:46900394-46900413 Msa0024490:CDS 35.0%
ACCAAACCGAAGTAATTAGA+GGG + chr1_1:46900403-46900422 None:intergenic 35.0%
AACCAAACCGAAGTAATTAG+AGG + chr1_1:46900404-46900423 None:intergenic 35.0%
AAGTACTTCTTGGAATGACT+TGG - chr1_1:46900612-46900631 Msa0024490:intron 35.0%
CTATAACAATTATGGCTGGA+GGG + chr1_1:46900689-46900708 None:intergenic 35.0%
AAAGAGGGGAATAAAACGTT+TGG - chr1_1:46900858-46900877 Msa0024490:intron 35.0%
TGAATGATACTGACAACTTG+AGG - chr1_1:46901149-46901168 Msa0024490:intron 35.0%
TTCCAAATACAGACATGAAG+CGG - chr1_1:46901415-46901434 Msa0024490:intron 35.0%
ATTTACCACGAATCCAAACA+AGG - chr1_1:46901626-46901645 Msa0024490:CDS 35.0%
TGAGTCATGTAATCCTTGTT+TGG + chr1_1:46901642-46901661 None:intergenic 35.0%
CAAGAGTCAAGACTATAAAG+TGG - chr1_1:46901660-46901679 Msa0024490:CDS 35.0%
TTCTTACTTAATGAGCATGC+AGG - chr1_1:46902086-46902105 Msa0024490:CDS 35.0%
!!! AAAACTTTTAAAGGCACCAC+TGG - chr1_1:46902134-46902153 Msa0024490:CDS 35.0%
!!! AAACTTTTAAAGGCACCACT+GGG - chr1_1:46902135-46902154 Msa0024490:CDS 35.0%
! TCAATTTTGCGACCATTCAA+TGG + chr1_1:46902195-46902214 None:intergenic 35.0%
AACTACCACAAATAGAGACA+TGG - chr1_1:46902222-46902241 Msa0024490:intron 35.0%
ACTACCACAAATAGAGACAT+GGG - chr1_1:46902223-46902242 Msa0024490:intron 35.0%
TTTAGAGGGATACTAACATC+AGG + chr1_1:46902319-46902338 None:intergenic 35.0%
! TTCTACTAGGACACTTTTCT+AGG - chr1_1:46902392-46902411 Msa0024490:exon 35.0%
!!! AGGACACTTTTCTAGGATTT+TGG - chr1_1:46902399-46902418 Msa0024490:exon 35.0%
GAGCATTTAGCAGATTCTGT+TGG + chr1_1:46899202-46899221 None:intergenic 40.0%
AGAATCTGCTAAATGCTCCT+TGG - chr1_1:46899204-46899223 Msa0024490:three_prime_UTR 40.0%
! ATAGGAAAAGTATGCTGCCA+AGG + chr1_1:46899224-46899243 None:intergenic 40.0%
!! GATGGTGGATGAATTTGTTG+GGG + chr1_1:46899290-46899309 None:intergenic 40.0%
!! GGATGGTGGATGAATTTGTT+GGG + chr1_1:46899291-46899310 None:intergenic 40.0%
!! TGGATGGTGGATGAATTTGT+TGG + chr1_1:46899292-46899311 None:intergenic 40.0%
ATATGCTCAACTTTGGATGG+TGG + chr1_1:46899305-46899324 None:intergenic 40.0%
AGGATATGCTCAACTTTGGA+TGG + chr1_1:46899308-46899327 None:intergenic 40.0%
ATCAAATGGTCCTGAGAAGT+GGG - chr1_1:46899701-46899720 Msa0024490:CDS 40.0%
AGGAACGTAGTTTCTGTCTA+AGG + chr1_1:46899826-46899845 None:intergenic 40.0%
AGAAGTCTCGAGTTCAAATG+TGG + chr1_1:46900338-46900357 None:intergenic 40.0%
ACCGAAGTAATTAGAGGGTT+TGG + chr1_1:46900398-46900417 None:intergenic 40.0%
ACCCTCTAATTACTTCGGTT+TGG - chr1_1:46900399-46900418 Msa0024490:CDS 40.0%
GCTATAACAATTATGGCTGG+AGG + chr1_1:46900690-46900709 None:intergenic 40.0%
TATCTTCTGTGAGGTGAACT+AGG + chr1_1:46901448-46901467 None:intergenic 40.0%
TATTGCAGCCCTCTACAATT+TGG - chr1_1:46901484-46901503 Msa0024490:intron 40.0%
ATTGCAGCCCTCTACAATTT+GGG - chr1_1:46901485-46901504 Msa0024490:intron 40.0%
AGGATCACCCAAATTGTAGA+GGG + chr1_1:46901495-46901514 None:intergenic 40.0%
AACTCTACCTTGGAGATTAG+AGG + chr1_1:46901521-46901540 None:intergenic 40.0%
CGGTAAATTTGTCGAAGTCA+TGG - chr1_1:46901581-46901600 Msa0024490:intron 40.0%
! GTAATCCTTGTTTGGATTCG+TGG + chr1_1:46901634-46901653 None:intergenic 40.0%
AAAGATGCCAAAATTGCCCT+TGG - chr1_1:46901793-46901812 Msa0024490:intron 40.0%
CAAATGACACCTTCTTTGCA+TGG + chr1_1:46901892-46901911 None:intergenic 40.0%
!! CATGCAAAGAAGGTGTCATT+TGG - chr1_1:46901890-46901909 Msa0024490:intron 40.0%
!! GGTGTCATTTGGAACATCAT+TGG - chr1_1:46901901-46901920 Msa0024490:intron 40.0%
! CATTTGGAACATCATTGGCA+AGG - chr1_1:46901906-46901925 Msa0024490:intron 40.0%
ACTTAATGAGCATGCAGGTT+AGG - chr1_1:46902091-46902110 Msa0024490:CDS 40.0%
GAATCCCATGTCTCTATTTG+TGG + chr1_1:46902230-46902249 None:intergenic 40.0%
GGGGTTACTTACAAGATCAG+TGG + chr1_1:46899271-46899290 None:intergenic 45.0%
GATCAAATGGTCCTGAGAAG+TGG - chr1_1:46899700-46899719 Msa0024490:CDS 45.0%
TCAAATGGTCCTGAGAAGTG+GGG - chr1_1:46899702-46899721 Msa0024490:CDS 45.0%
TTTGAGCATGCTGCGAAAGA+TGG + chr1_1:46899738-46899757 None:intergenic 45.0%
TCTTTCGCAGCATGCTCAAA+TGG - chr1_1:46899738-46899757 Msa0024490:CDS 45.0%
TGGTGTCTAGGTATCAGTGT+TGG - chr1_1:46900043-46900062 Msa0024490:CDS 45.0%
GGTGTCTAGGTATCAGTGTT+GGG - chr1_1:46900044-46900063 Msa0024490:CDS 45.0%
TTGGGAGAGAAGAAGAGAGA+GGG + chr1_1:46900289-46900308 None:intergenic 45.0%
TTTGGGAGAGAAGAAGAGAG+AGG + chr1_1:46900290-46900309 None:intergenic 45.0%
TTATGGCTGGAGGGAGAAAA+TGG + chr1_1:46900680-46900699 None:intergenic 45.0%
TCCTTCTTTCTGATCTGCCA+CGG + chr1_1:46900797-46900816 None:intergenic 45.0%
CTCCGCTTCATGTCTGTATT+TGG + chr1_1:46901420-46901439 None:intergenic 45.0%
CAGGATCACCCAAATTGTAG+AGG + chr1_1:46901496-46901515 None:intergenic 45.0%
TCCTGATCCTCTAATCTCCA+AGG - chr1_1:46901511-46901530 Msa0024490:intron 45.0%
ACCTTGGAGATTAGAGGATC+AGG + chr1_1:46901515-46901534 None:intergenic 45.0%
CTAGCCAATGAGAATCGTGT+GGG - chr1_1:46901766-46901785 Msa0024490:intron 45.0%
!!! AAAGGTGCCAAGGGCAATTT+TGG + chr1_1:46901803-46901822 None:intergenic 45.0%
!! CTCTACATCAAAGGTGCCAA+GGG + chr1_1:46901812-46901831 None:intergenic 45.0%
TGACACCTTCTTTGCATGGA+GGG + chr1_1:46901888-46901907 None:intergenic 45.0%
ATGACACCTTCTTTGCATGG+AGG + chr1_1:46901889-46901908 None:intergenic 45.0%
TAGAGTTCCAGCACAATGCA+AGG - chr1_1:46902160-46902179 Msa0024490:CDS 45.0%
!!! AAGTTTTTTTTTTTTTTTTA+TGG - chr1_1:46899650-46899669 Msa0024490:CDS 5.0%
!!! AATATTTTTTATATTTAACT+CGG - chr1_1:46900819-46900838 Msa0024490:intron 5.0%
! TGCTGCGAAAGATGGACTCA+GGG + chr1_1:46899730-46899749 None:intergenic 50.0%
! ATGCTGCGAAAGATGGACTC+AGG + chr1_1:46899731-46899750 None:intergenic 50.0%
! TGGAAAAGCACAGAGTCCAG+TGG - chr1_1:46899758-46899777 Msa0024490:intron 50.0%
! GGAATAGAACTTTTGGCCCG+TGG - chr1_1:46900777-46900796 Msa0024490:intron 50.0%
CCTTCTTTCTGATCTGCCAC+GGG + chr1_1:46900796-46900815 None:intergenic 50.0%
CTTCTGTGAGGTGAACTAGG+TGG + chr1_1:46901445-46901464 None:intergenic 50.0%
GCTAGCCAATGAGAATCGTG+TGG - chr1_1:46901765-46901784 Msa0024490:intron 50.0%
GTTGCCCACACGATTCTCAT+TGG + chr1_1:46901773-46901792 None:intergenic 50.0%
!! CCTCTACATCAAAGGTGCCA+AGG + chr1_1:46901813-46901832 None:intergenic 50.0%
CCTTGGCACCTTTGATGTAG+AGG - chr1_1:46901810-46901829 Msa0024490:intron 50.0%
ACTACCCCTCCATGCAAAGA+AGG - chr1_1:46901880-46901899 Msa0024490:intron 50.0%
GACACCTTCTTTGCATGGAG+GGG + chr1_1:46901887-46901906 None:intergenic 50.0%
AGGCCACTTCAGCCATTGAA+TGG - chr1_1:46902180-46902199 Msa0024490:intron 50.0%
CGACCATTCAATGGCTGAAG+TGG + chr1_1:46902186-46902205 None:intergenic 50.0%
CCCGTGGCAGATCAGAAAGA+AGG - chr1_1:46900793-46900812 Msa0024490:intron 55.0%
TGCTGGAACTCTACACCCAG+TGG + chr1_1:46902153-46902172 None:intergenic 55.0%
! GAAGTGGCCTTGCATTGTGC+TGG + chr1_1:46902170-46902189 None:intergenic 55.0%
CTCAGGGTTCCCCACTTCTC+AGG + chr1_1:46899714-46899733 None:intergenic 60.0%
GCATGCACCTGCAGAGCACA+GGG - chr1_1:46900223-46900242 Msa0024490:intron 60.0%
GGCATGCACCTGCAGAGCAC+AGG - chr1_1:46900222-46900241 Msa0024490:intron 65.0%
CCATGAGCCCTGTGCTCTGC+AGG + chr1_1:46900233-46900252 None:intergenic 65.0%
CCTGCAGAGCACAGGGCTCA+TGG - chr1_1:46900230-46900249 Msa0024490:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 46899196 46902677 46899196 ID=Msa0024490;Name=Msa0024490
chr1_1 mRNA 46899196 46902677 46899196 ID=Msa0024490-mRNA-1;Parent=Msa0024490;Name=Msa0024490-mRNA-1;_AED=0.06;_eAED=0.06;_QI=271|1|1|1|1|1|6|441|267
chr1_1 exon 46899196 46899765 46899196 ID=Msa0024490-mRNA-1:exon:13389;Parent=Msa0024490-mRNA-1
chr1_1 exon 46899946 46900128 46899946 ID=Msa0024490-mRNA-1:exon:13388;Parent=Msa0024490-mRNA-1
chr1_1 exon 46900341 46900446 46900341 ID=Msa0024490-mRNA-1:exon:13387;Parent=Msa0024490-mRNA-1
chr1_1 exon 46901615 46901721 46901615 ID=Msa0024490-mRNA-1:exon:13386;Parent=Msa0024490-mRNA-1
chr1_1 exon 46901989 46902197 46901989 ID=Msa0024490-mRNA-1:exon:13385;Parent=Msa0024490-mRNA-1
chr1_1 exon 46902337 46902677 46902337 ID=Msa0024490-mRNA-1:exon:13384;Parent=Msa0024490-mRNA-1
chr1_1 five_prime_UTR 46902407 46902677 46902407 ID=Msa0024490-mRNA-1:five_prime_utr;Parent=Msa0024490-mRNA-1
chr1_1 CDS 46902337 46902406 46902337 ID=Msa0024490-mRNA-1:cds;Parent=Msa0024490-mRNA-1
chr1_1 CDS 46901989 46902197 46901989 ID=Msa0024490-mRNA-1:cds;Parent=Msa0024490-mRNA-1
chr1_1 CDS 46901615 46901721 46901615 ID=Msa0024490-mRNA-1:cds;Parent=Msa0024490-mRNA-1
chr1_1 CDS 46900341 46900446 46900341 ID=Msa0024490-mRNA-1:cds;Parent=Msa0024490-mRNA-1
chr1_1 CDS 46899946 46900128 46899946 ID=Msa0024490-mRNA-1:cds;Parent=Msa0024490-mRNA-1
chr1_1 CDS 46899637 46899765 46899637 ID=Msa0024490-mRNA-1:cds;Parent=Msa0024490-mRNA-1
chr1_1 three_prime_UTR 46899196 46899636 46899196 ID=Msa0024490-mRNA-1:three_prime_utr;Parent=Msa0024490-mRNA-1
Gene Sequence

>Msa0024490

ATGGCCTTGAAGATTTACTTTTCAATCCTTTTTATTGCAACTTTGGCTTTATGCACTTCAGCAAATTATAATTTGGTTAATTTTAGTTATATTGGATCAAATGGTCCTGAGAAGTGGGGAACCCTGAGTCCATCTTTCGCAGCATGCTCAAATGGAAAAGCACAGAGTCCAGTGGATCTTGTAATGACAAATATTGTCATGAACCAAGAATTGAAATCCTTAGACAGAAACTACGTTCCTACAAATGCCACACTTGTTAACAATCAATTCAACATTGGGGTACATTTTGAAGGAAAAGTTGGAGATATTAACATAAATGGAATGAATTACTCATTGAAACAACTTCATTGGCATGCACCTGCAGAGCACAGGGCTCATGGTCGTTTACATGAAGCGGAGCTCCACCTAGTTCACCTCACAGAAGATAACAATAACATAGCAGTTATTGCAGCCCTCTACAATTTGGGTGATCCTGATCCTCTAATCTCCAAGATTGAAGACAAGTTCTATGAGCTAGCCAATGAGAATCGTGTGGGCAACAAAGATGCCAAAATTGCCCTTGGCACCTTTGATGTAGAGGAAATAAATAAAAGGATCCATAGATATTATAGATATGTTGGCTCTCTCACTACCCCTCCATGCAAAGAAGGTGTCATTTGGAACATCATTGGCAAGGTTAGGACACTCTCCAAAGAACAACTAAAACTTTTAAAGGCACCACTGGGTGTAGAGTTCCAGCACAATGCAAGGCCACTTCAGCCATTGAATGGTCGCAAAATTGAGATGTACAACTACCACAAATAG

Protein sequence

>Msa0024490

MALKIYFSILFIATLALCTSANYNLVNFSYIGSNGPEKWGTLSPSFAACSNGKAQSPVDLVMTNIVMNQELKSLDRNYVPTNATLVNNQFNIGVHFEGKVGDININGMNYSLKQLHWHAPAEHRAHGRLHEAELHLVHLTEDNNNIAVIAALYNLGDPDPLISKIEDKFYELANENRVGNKDAKIALGTFDVEEINKRIHRYYRYVGSLTTPPCKEGVIWNIIGKVRTLSKEQLKLLKAPLGVEFQHNARPLQPLNGRKIEMYNYHK*