AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0948820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0948820 MtrunA17_Chr6g0464451 93.773 273 14 1 1 273 42 311 1.55e-179 496
Msa0948820 MtrunA17_Chr6g0464411 73.626 273 67 1 1 273 1 268 1.63e-150 421
Msa0948820 MtrunA17_Chr6g0464441 77.397 146 33 0 128 273 1 146 5.87e-81 240
Msa0948820 MtrunA17_Chr6g0464421 63.025 119 39 1 1 119 1 114 1.88e-48 157
Msa0948820 MtrunA17_Chr7g0241571 43.925 107 58 2 168 273 160 265 4.82e-20 87.0
Msa0948820 MtrunA17_Chr4g0031681 43.182 88 48 2 186 272 174 260 1.84e-14 72.8
Msa0948820 MtrunA17_Chr5g0440411 29.825 171 111 4 110 272 141 310 3.51e-14 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0948820 AT5G16010.1 59.551 267 103 2 8 273 6 268 2.40e-116 335
Msa0948820 AT2G38050.1 32.710 107 71 1 168 273 156 262 6.61e-15 73.2
Msa0948820 AT3G55360.1 32.164 171 107 5 110 272 141 310 2.93e-14 72.0
Msa0948820 AT2G16530.1 26.512 215 116 6 98 273 132 343 4.41e-11 62.8
Msa0948820 AT2G16530.4 26.512 215 116 6 98 273 132 343 4.41e-11 62.8
Msa0948820 AT2G16530.2 26.512 215 116 6 98 273 131 342 4.65e-11 62.8

Find 52 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATTTACGTTCCAGAATT+TGG 0.133911 6_3:-33774749 None:intergenic
ATAATAGCCTTAACATTCTT+AGG 0.263013 6_3:-33776824 None:intergenic
ATTTAAACTATTCCAAATTC+TGG 0.314204 6_3:+33774737 Msa0948820:CDS
TACAAGAAACAATGTGATTC+CGG 0.321584 6_3:-33776540 None:intergenic
GTATAAGAGGTTAATACATT+TGG 0.337688 6_3:+33776977 Msa0948820:three_prime_UTR
TTTAGATCTTTGGTTCTTCA+AGG 0.346488 6_3:+33774904 Msa0948820:CDS
CCACAAATATAGTGGTTCTA+TGG 0.348368 6_3:+33776403 Msa0948820:CDS
AGAAAATAACTTAGAGTTAT+GGG 0.350393 6_3:-33776443 None:intergenic
TATCTTCTATCCAAATTAAG+AGG 0.370538 6_3:+33776590 Msa0948820:CDS
AAATCAAACAAGCCACCTTT+AGG 0.388800 6_3:-33776638 None:intergenic
GTGATTATGTTGTGTATAAG+AGG 0.392946 6_3:+33776964 Msa0948820:three_prime_UTR
GAGAAAATAACTTAGAGTTA+TGG 0.393676 6_3:-33776444 None:intergenic
CTATTTGTCCACAAATATAG+TGG 0.398112 6_3:+33776395 Msa0948820:CDS
GGAATCACATTGTTTCTTGT+AGG 0.401990 6_3:+33776542 Msa0948820:CDS
TTGTGTTATTCAAATATAAG+AGG 0.423484 6_3:+33776900 Msa0948820:three_prime_UTR
TGTTCTAAATATTGCAAGCT+AGG 0.425611 6_3:+33776855 Msa0948820:exon
ACAAGAAACAATGTGATTCC+GGG 0.450458 6_3:-33776539 None:intergenic
ATGAAATTGTCGAGTAAAAG+TGG 0.451319 6_3:+33774811 Msa0948820:CDS
GGTTCTTCAAGGTGCGGTTA+CGG 0.452069 6_3:+33774915 Msa0948820:CDS
CTATCCAAATTAAGAGGAAA+AGG 0.458549 6_3:+33776596 Msa0948820:CDS
AATAGATCGATTGATGGTTC+TGG 0.459828 6_3:-33776512 None:intergenic
GCAGGTATCAACGAAGTTAG+AGG 0.460191 6_3:+33774709 Msa0948820:CDS
TATTCATTCTCTTTCGCCAT+AGG 0.471133 6_3:+33776731 Msa0948820:CDS
CCATAGAACCACTATATTTG+TGG 0.471338 6_3:-33776403 None:intergenic
TTGTTTCTTGTAGGCATCAC+CGG 0.480456 6_3:+33776551 Msa0948820:CDS
AAAGATCTAAAACCATCATC+AGG 0.489846 6_3:-33774892 None:intergenic
GGTGATGAATAGTGATGGTG+GGG 0.492390 6_3:-33774650 None:intergenic
GCTTGTGGACTTATTTCAGT+TGG 0.495448 6_3:+33776925 Msa0948820:three_prime_UTR
GGGGTGGGAATAGGAAGTTT+AGG 0.497094 6_3:-33774630 None:intergenic
TTGCATAACTCCTACCCAAA+AGG 0.506130 6_3:-33776766 None:intergenic
GGATACAATAGATCGATTGA+TGG 0.506607 6_3:-33776518 None:intergenic
AAAGAATACAAGATTCCTAA+AGG 0.529482 6_3:+33776623 Msa0948820:CDS
GCAGCACCAGCAACAAAAGC+AGG 0.536471 6_3:-33774853 None:intergenic
ATAATGATGGTAGAAGTTGC+CGG 0.544164 6_3:-33776570 None:intergenic
ATTTGGATAGAAGATAATGA+TGG 0.547206 6_3:-33776583 None:intergenic
TGGTGATGAATAGTGATGGT+GGG 0.547912 6_3:-33774651 None:intergenic
TGGGTAGGAGTTATGCAACT+AGG 0.551229 6_3:+33776771 Msa0948820:CDS
ATCTTTGGTTCTTCAAGGTG+CGG 0.561222 6_3:+33774909 Msa0948820:CDS
GTGGTGATGAATAGTGATGG+TGG 0.569321 6_3:-33774652 None:intergenic
CAAATATAAGAGGTAGCTTG+TGG 0.582618 6_3:+33776910 Msa0948820:three_prime_UTR
GTGATGAATAGTGATGGTGG+GGG 0.585799 6_3:-33774649 None:intergenic
TAGGAACGTGGAGAATGTCA+TGG 0.587780 6_3:-33774611 None:intergenic
TCAATCGATCTATTGTATCC+CGG 0.587840 6_3:+33776521 Msa0948820:CDS
GGAGTTATGCAACTAGGAGA+TGG 0.597335 6_3:+33776777 Msa0948820:CDS
GAATACAAGATTCCTAAAGG+TGG 0.614245 6_3:+33776626 Msa0948820:CDS
CAGGTATCAACGAAGTTAGA+GGG 0.624741 6_3:+33774710 Msa0948820:CDS
GAATAGGAAGTTTAGGAACG+TGG 0.656255 6_3:-33774623 None:intergenic
TGTGTCTCACTTGCAAACGC+AGG 0.665442 6_3:+33774691 Msa0948820:CDS
GTTCTGGAAGATTCGATGTG+AGG 0.693883 6_3:-33776496 None:intergenic
ATGGTGGTGATGAATAGTGA+TGG 0.705394 6_3:-33774655 None:intergenic
ACATGTTATGACAGACATGG+TGG 0.765146 6_3:-33774671 None:intergenic
GACACATGTTATGACAGACA+TGG 0.820382 6_3:-33774674 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATGATTTTAATTGTTGT+GGG + chr6_3:33775045-33775064 Msa0948820:intron 15.0%
!! ACATATATATGTTTATAAGT+GGG - chr6_3:33775444-33775463 None:intergenic 15.0%
!! TTAAAATTCTGAATAAGATA+AGG - chr6_3:33776053-33776072 None:intergenic 15.0%
!!! TTTATGATTTTAATTGTTGT+GGG + chr6_3:33775045-33775064 Msa0948820:intron 15.0%
!! ACATATATATGTTTATAAGT+GGG - chr6_3:33775444-33775463 None:intergenic 15.0%
!! TTAAAATTCTGAATAAGATA+AGG - chr6_3:33776053-33776072 None:intergenic 15.0%
!! ATTTAAACTATTCCAAATTC+TGG + chr6_3:33774737-33774756 Msa0948820:CDS 20.0%
!!! GTTTATGATTTTAATTGTTG+TGG + chr6_3:33775044-33775063 Msa0948820:intron 20.0%
!!! CTATTTTGGTTTTAAATTTG+TGG + chr6_3:33775155-33775174 Msa0948820:intron 20.0%
!!! TTATGTATGCTTTAAAGTTT+AGG + chr6_3:33775246-33775265 Msa0948820:intron 20.0%
!! ATAGTTATGCATTCTATTTA+AGG - chr6_3:33775296-33775315 None:intergenic 20.0%
!! ATCTTATAACCTTACAAAAT+CGG + chr6_3:33775398-33775417 Msa0948820:intron 20.0%
!! ATATATATGTTTATAAGTGG+GGG - chr6_3:33775442-33775461 None:intergenic 20.0%
!! CATATATATGTTTATAAGTG+GGG - chr6_3:33775443-33775462 None:intergenic 20.0%
!! CACATATATATGTTTATAAG+TGG - chr6_3:33775445-33775464 None:intergenic 20.0%
!! TAAATCTTTCTCATCAAATT+AGG + chr6_3:33775499-33775518 Msa0948820:intron 20.0%
!! AAATCTTTCTCATCAAATTA+GGG + chr6_3:33775500-33775519 Msa0948820:intron 20.0%
!!! ATGCAAGTATAATTTTAGTT+AGG + chr6_3:33775877-33775896 Msa0948820:intron 20.0%
!!! TTTATTGTGTGTTATTCTTT+TGG + chr6_3:33775951-33775970 Msa0948820:intron 20.0%
!! ACAAAATTAAATATAAGCTC+TGG - chr6_3:33776084-33776103 None:intergenic 20.0%
!! AGAAAATAACTTAGAGTTAT+GGG - chr6_3:33776446-33776465 None:intergenic 20.0%
!!! ATTATCTTTTTGAGATCATA+GGG + chr6_3:33776675-33776694 Msa0948820:CDS 20.0%
!!! TGCAATATTTAGAACAAAAA+TGG - chr6_3:33776851-33776870 None:intergenic 20.0%
!!! TTGTGTTATTCAAATATAAG+AGG + chr6_3:33776900-33776919 Msa0948820:three_prime_UTR 20.0%
!! ATTTAAACTATTCCAAATTC+TGG + chr6_3:33774737-33774756 Msa0948820:CDS 20.0%
!!! GTTTATGATTTTAATTGTTG+TGG + chr6_3:33775044-33775063 Msa0948820:intron 20.0%
!!! CTATTTTGGTTTTAAATTTG+TGG + chr6_3:33775155-33775174 Msa0948820:intron 20.0%
!!! TTATGTATGCTTTAAAGTTT+AGG + chr6_3:33775246-33775265 Msa0948820:intron 20.0%
!! ATAGTTATGCATTCTATTTA+AGG - chr6_3:33775296-33775315 None:intergenic 20.0%
!! ATCTTATAACCTTACAAAAT+CGG + chr6_3:33775398-33775417 Msa0948820:intron 20.0%
!! ATATATATGTTTATAAGTGG+GGG - chr6_3:33775442-33775461 None:intergenic 20.0%
!! CATATATATGTTTATAAGTG+GGG - chr6_3:33775443-33775462 None:intergenic 20.0%
!! CACATATATATGTTTATAAG+TGG - chr6_3:33775445-33775464 None:intergenic 20.0%
!! TAAATCTTTCTCATCAAATT+AGG + chr6_3:33775499-33775518 Msa0948820:intron 20.0%
!! AAATCTTTCTCATCAAATTA+GGG + chr6_3:33775500-33775519 Msa0948820:intron 20.0%
!!! ATGCAAGTATAATTTTAGTT+AGG + chr6_3:33775877-33775896 Msa0948820:intron 20.0%
!!! TTTATTGTGTGTTATTCTTT+TGG + chr6_3:33775951-33775970 Msa0948820:intron 20.0%
!! ACAAAATTAAATATAAGCTC+TGG - chr6_3:33776084-33776103 None:intergenic 20.0%
!! AGAAAATAACTTAGAGTTAT+GGG - chr6_3:33776446-33776465 None:intergenic 20.0%
!!! ATTATCTTTTTGAGATCATA+GGG + chr6_3:33776675-33776694 Msa0948820:CDS 20.0%
!!! TGCAATATTTAGAACAAAAA+TGG - chr6_3:33776851-33776870 None:intergenic 20.0%
!!! TTGTGTTATTCAAATATAAG+AGG + chr6_3:33776900-33776919 Msa0948820:three_prime_UTR 20.0%
! ATTATTTACGTTCCAGAATT+TGG - chr6_3:33774752-33774771 None:intergenic 25.0%
!!! TTTCTTTAAGAGAGTTTTTG+AGG + chr6_3:33774942-33774961 Msa0948820:CDS 25.0%
!!! TTTGTTTTTGTTAGAACTTG+TGG + chr6_3:33775089-33775108 Msa0948820:intron 25.0%
!!! CTTTTGTTTTAAAGAGTGTA+TGG + chr6_3:33775125-33775144 Msa0948820:intron 25.0%
! TGATGTCCACTTATTAAAAT+GGG - chr6_3:33775182-33775201 None:intergenic 25.0%
! TTAAAGCATACATAAGTATG+TGG - chr6_3:33775241-33775260 None:intergenic 25.0%
! TATGATACAATCGTAGAATT+TGG + chr6_3:33775629-33775648 Msa0948820:intron 25.0%
!! CAATTTTGTAAGGTTAAGTT+AGG - chr6_3:33775661-33775680 None:intergenic 25.0%
! CTAACTTAACCTTACAAAAT+TGG + chr6_3:33775659-33775678 Msa0948820:intron 25.0%
!! GATTTTCACAATCCAAATTA+TGG - chr6_3:33775811-33775830 None:intergenic 25.0%
! GAGAAAATAACTTAGAGTTA+TGG - chr6_3:33776447-33776466 None:intergenic 25.0%
! ATTTGGATAGAAGATAATGA+TGG - chr6_3:33776586-33776605 None:intergenic 25.0%
! TATCTTCTATCCAAATTAAG+AGG + chr6_3:33776590-33776609 Msa0948820:CDS 25.0%
! AAAGAATACAAGATTCCTAA+AGG + chr6_3:33776623-33776642 Msa0948820:CDS 25.0%
! ATGATCTCAAAAAGATAATG+AGG - chr6_3:33776674-33776693 None:intergenic 25.0%
!!! CATTATCTTTTTGAGATCAT+AGG + chr6_3:33776674-33776693 Msa0948820:CDS 25.0%
!! TGATTTTCCTAAGAATGTTA+AGG + chr6_3:33776817-33776836 Msa0948820:CDS 25.0%
!! ATAATAGCCTTAACATTCTT+AGG - chr6_3:33776827-33776846 None:intergenic 25.0%
! ATTATTTACGTTCCAGAATT+TGG - chr6_3:33774752-33774771 None:intergenic 25.0%
!!! TTTCTTTAAGAGAGTTTTTG+AGG + chr6_3:33774942-33774961 Msa0948820:CDS 25.0%
!!! TTTGTTTTTGTTAGAACTTG+TGG + chr6_3:33775089-33775108 Msa0948820:intron 25.0%
!!! CTTTTGTTTTAAAGAGTGTA+TGG + chr6_3:33775125-33775144 Msa0948820:intron 25.0%
! TGATGTCCACTTATTAAAAT+GGG - chr6_3:33775182-33775201 None:intergenic 25.0%
! TTAAAGCATACATAAGTATG+TGG - chr6_3:33775241-33775260 None:intergenic 25.0%
! TATGATACAATCGTAGAATT+TGG + chr6_3:33775629-33775648 Msa0948820:intron 25.0%
!! CAATTTTGTAAGGTTAAGTT+AGG - chr6_3:33775661-33775680 None:intergenic 25.0%
! CTAACTTAACCTTACAAAAT+TGG + chr6_3:33775659-33775678 Msa0948820:intron 25.0%
!! GATTTTCACAATCCAAATTA+TGG - chr6_3:33775811-33775830 None:intergenic 25.0%
! GAGAAAATAACTTAGAGTTA+TGG - chr6_3:33776447-33776466 None:intergenic 25.0%
! ATTTGGATAGAAGATAATGA+TGG - chr6_3:33776586-33776605 None:intergenic 25.0%
! TATCTTCTATCCAAATTAAG+AGG + chr6_3:33776590-33776609 Msa0948820:CDS 25.0%
! AAAGAATACAAGATTCCTAA+AGG + chr6_3:33776623-33776642 Msa0948820:CDS 25.0%
! ATGATCTCAAAAAGATAATG+AGG - chr6_3:33776674-33776693 None:intergenic 25.0%
!!! CATTATCTTTTTGAGATCAT+AGG + chr6_3:33776674-33776693 Msa0948820:CDS 25.0%
!! TGATTTTCCTAAGAATGTTA+AGG + chr6_3:33776817-33776836 Msa0948820:CDS 25.0%
!! ATAATAGCCTTAACATTCTT+AGG - chr6_3:33776827-33776846 None:intergenic 25.0%
!!! CATGGTTTTTTTGTTTTGTG+TGG - chr6_3:33774596-33774615 None:intergenic 30.0%
ATGAAATTGTCGAGTAAAAG+TGG + chr6_3:33774811-33774830 Msa0948820:CDS 30.0%
! AAAGATCTAAAACCATCATC+AGG - chr6_3:33774895-33774914 None:intergenic 30.0%
!!! TGATGATGGTTTTAGATCTT+TGG + chr6_3:33774894-33774913 Msa0948820:CDS 30.0%
!! TTTAGATCTTTGGTTCTTCA+AGG + chr6_3:33774904-33774923 Msa0948820:CDS 30.0%
TTGAGGTAATGTATAACCTA+TGG + chr6_3:33774959-33774978 Msa0948820:intron 30.0%
ATCTCACATCATTAAACCAT+AGG - chr6_3:33774978-33774997 None:intergenic 30.0%
! TGTATGGCGAAATTCTATTT+TGG + chr6_3:33775141-33775160 Msa0948820:intron 30.0%
GTGATGTCCACTTATTAAAA+TGG - chr6_3:33775183-33775202 None:intergenic 30.0%
TTATACACAACCGAAATAGT+GGG - chr6_3:33775214-33775233 None:intergenic 30.0%
!! TATGCTTTAAAGTTTAGGAG+AGG + chr6_3:33775251-33775270 Msa0948820:intron 30.0%
AACTATGTCTCTCTAATTGT+TGG + chr6_3:33775310-33775329 Msa0948820:intron 30.0%
! CTGATACCATGTAAGAATTT+TGG + chr6_3:33775366-33775385 Msa0948820:intron 30.0%
!!! ACCATGTAAGAATTTTGGTT+TGG + chr6_3:33775371-33775390 Msa0948820:intron 30.0%
!!! CCATGTAAGAATTTTGGTTT+GGG + chr6_3:33775372-33775391 Msa0948820:intron 30.0%
TTAAATTAAGAGTCTCACGT+TGG - chr6_3:33775482-33775501 None:intergenic 30.0%
! ACATACAAGCCAATTTTGTA+AGG - chr6_3:33775671-33775690 None:intergenic 30.0%
TACCTACATTAGAAGAGATA+TGG - chr6_3:33775725-33775744 None:intergenic 30.0%
GTACAAACCTACAATTAATG+CGG + chr6_3:33775776-33775795 Msa0948820:intron 30.0%
TGTAAGTTATGTTTGTTCCT+AGG + chr6_3:33776134-33776153 Msa0948820:intron 30.0%
CACTCAATATACACAAAATC+TGG - chr6_3:33776298-33776317 None:intergenic 30.0%
CTATTTGTCCACAAATATAG+TGG + chr6_3:33776395-33776414 Msa0948820:CDS 30.0%
TACAAGAAACAATGTGATTC+CGG - chr6_3:33776543-33776562 None:intergenic 30.0%
CTATCCAAATTAAGAGGAAA+AGG + chr6_3:33776596-33776615 Msa0948820:CDS 30.0%
! TTCACCTTTTCCTCTTAATT+TGG - chr6_3:33776603-33776622 None:intergenic 30.0%
!! TTTGAGATCATAGGGTTTTA+TGG + chr6_3:33776683-33776702 Msa0948820:CDS 30.0%
! TGTTCTAAATATTGCAAGCT+AGG + chr6_3:33776855-33776874 Msa0948820:exon 30.0%
GTGATTATGTTGTGTATAAG+AGG + chr6_3:33776964-33776983 Msa0948820:three_prime_UTR 30.0%
!!! CATGGTTTTTTTGTTTTGTG+TGG - chr6_3:33774596-33774615 None:intergenic 30.0%
ATGAAATTGTCGAGTAAAAG+TGG + chr6_3:33774811-33774830 Msa0948820:CDS 30.0%
! AAAGATCTAAAACCATCATC+AGG - chr6_3:33774895-33774914 None:intergenic 30.0%
!!! TGATGATGGTTTTAGATCTT+TGG + chr6_3:33774894-33774913 Msa0948820:CDS 30.0%
!! TTTAGATCTTTGGTTCTTCA+AGG + chr6_3:33774904-33774923 Msa0948820:CDS 30.0%
TTGAGGTAATGTATAACCTA+TGG + chr6_3:33774959-33774978 Msa0948820:intron 30.0%
ATCTCACATCATTAAACCAT+AGG - chr6_3:33774978-33774997 None:intergenic 30.0%
! TGTATGGCGAAATTCTATTT+TGG + chr6_3:33775141-33775160 Msa0948820:intron 30.0%
GTGATGTCCACTTATTAAAA+TGG - chr6_3:33775183-33775202 None:intergenic 30.0%
TTATACACAACCGAAATAGT+GGG - chr6_3:33775214-33775233 None:intergenic 30.0%
!! TATGCTTTAAAGTTTAGGAG+AGG + chr6_3:33775251-33775270 Msa0948820:intron 30.0%
AACTATGTCTCTCTAATTGT+TGG + chr6_3:33775310-33775329 Msa0948820:intron 30.0%
! CTGATACCATGTAAGAATTT+TGG + chr6_3:33775366-33775385 Msa0948820:intron 30.0%
!!! ACCATGTAAGAATTTTGGTT+TGG + chr6_3:33775371-33775390 Msa0948820:intron 30.0%
!!! CCATGTAAGAATTTTGGTTT+GGG + chr6_3:33775372-33775391 Msa0948820:intron 30.0%
TTAAATTAAGAGTCTCACGT+TGG - chr6_3:33775482-33775501 None:intergenic 30.0%
! ACATACAAGCCAATTTTGTA+AGG - chr6_3:33775671-33775690 None:intergenic 30.0%
TACCTACATTAGAAGAGATA+TGG - chr6_3:33775725-33775744 None:intergenic 30.0%
GTACAAACCTACAATTAATG+CGG + chr6_3:33775776-33775795 Msa0948820:intron 30.0%
TGTAAGTTATGTTTGTTCCT+AGG + chr6_3:33776134-33776153 Msa0948820:intron 30.0%
CACTCAATATACACAAAATC+TGG - chr6_3:33776298-33776317 None:intergenic 30.0%
CTATTTGTCCACAAATATAG+TGG + chr6_3:33776395-33776414 Msa0948820:CDS 30.0%
TACAAGAAACAATGTGATTC+CGG - chr6_3:33776543-33776562 None:intergenic 30.0%
CTATCCAAATTAAGAGGAAA+AGG + chr6_3:33776596-33776615 Msa0948820:CDS 30.0%
! TTCACCTTTTCCTCTTAATT+TGG - chr6_3:33776603-33776622 None:intergenic 30.0%
!! TTTGAGATCATAGGGTTTTA+TGG + chr6_3:33776683-33776702 Msa0948820:CDS 30.0%
! TGTTCTAAATATTGCAAGCT+AGG + chr6_3:33776855-33776874 Msa0948820:exon 30.0%
GTGATTATGTTGTGTATAAG+AGG + chr6_3:33776964-33776983 Msa0948820:three_prime_UTR 30.0%
!!! TGTGGTTTTCTGTGTTGTTT+TGG - chr6_3:33774578-33774597 None:intergenic 35.0%
!!! TTTTTGGTGTTTCCTGATGA+TGG + chr6_3:33774880-33774899 Msa0948820:CDS 35.0%
!! TGTGGACCCATTTTAATAAG+TGG + chr6_3:33775173-33775192 Msa0948820:intron 35.0%
GTTATACACAACCGAAATAG+TGG - chr6_3:33775215-33775234 None:intergenic 35.0%
CCCAAACCAAAATTCTTACA+TGG - chr6_3:33775375-33775394 None:intergenic 35.0%
!!! CCTTACATACCGATTTTGTA+AGG - chr6_3:33775410-33775429 None:intergenic 35.0%
CCTTACAAAATCGGTATGTA+AGG + chr6_3:33775407-33775426 Msa0948820:intron 35.0%
CAAAATCGGTATGTAAGGTT+AGG + chr6_3:33775412-33775431 Msa0948820:intron 35.0%
AGTCTCACGTTGGATAAAAA+TGG - chr6_3:33775472-33775491 None:intergenic 35.0%
TGCTATTAAGTTTCCGCTAT+CGG - chr6_3:33775583-33775602 None:intergenic 35.0%
!! CAAAATTGGCTTGTATGTTG+AGG + chr6_3:33775673-33775692 Msa0948820:intron 35.0%
TGCCATATCTCTTCTAATGT+AGG + chr6_3:33775720-33775739 Msa0948820:intron 35.0%
AAAACCACCGCATTAATTGT+AGG - chr6_3:33775786-33775805 None:intergenic 35.0%
TGAAACCATACCTAATGCAA+TGG + chr6_3:33775833-33775852 Msa0948820:intron 35.0%
TCAATCCATTGCATTAGGTA+TGG - chr6_3:33775841-33775860 None:intergenic 35.0%
TCAACTCAATCCATTGCATT+AGG - chr6_3:33775846-33775865 None:intergenic 35.0%
TGTAATCTGTCAAAGTAGCA+AGG + chr6_3:33775921-33775940 Msa0948820:intron 35.0%
TTTGTTCCTAGGTATTTCGT+GGG + chr6_3:33776145-33776164 Msa0948820:intron 35.0%
! ATGTTTCTACTCTACTGTGT+AGG + chr6_3:33776370-33776389 Msa0948820:intron 35.0%
CCATAGAACCACTATATTTG+TGG - chr6_3:33776406-33776425 None:intergenic 35.0%
! CCACAAATATAGTGGTTCTA+TGG + chr6_3:33776403-33776422 Msa0948820:CDS 35.0%
! AATAGATCGATTGATGGTTC+TGG - chr6_3:33776515-33776534 None:intergenic 35.0%
GGATACAATAGATCGATTGA+TGG - chr6_3:33776521-33776540 None:intergenic 35.0%
TCAATCGATCTATTGTATCC+CGG + chr6_3:33776521-33776540 Msa0948820:CDS 35.0%
ACAAGAAACAATGTGATTCC+GGG - chr6_3:33776542-33776561 None:intergenic 35.0%
! GGAATCACATTGTTTCTTGT+AGG + chr6_3:33776542-33776561 Msa0948820:CDS 35.0%
ATAATGATGGTAGAAGTTGC+CGG - chr6_3:33776573-33776592 None:intergenic 35.0%
GAATACAAGATTCCTAAAGG+TGG + chr6_3:33776626-33776645 Msa0948820:CDS 35.0%
AAATCAAACAAGCCACCTTT+AGG - chr6_3:33776641-33776660 None:intergenic 35.0%
TATTCATTCTCTTTCGCCAT+AGG + chr6_3:33776731-33776750 Msa0948820:CDS 35.0%
AAGGTAAAAAGTAGTGCCTA+TGG - chr6_3:33776750-33776769 None:intergenic 35.0%
!!! AGGCACTACTTTTTACCTTT+TGG + chr6_3:33776751-33776770 Msa0948820:CDS 35.0%
!!! GGCACTACTTTTTACCTTTT+GGG + chr6_3:33776752-33776771 Msa0948820:CDS 35.0%
!!! CTACTTTTTACCTTTTGGGT+AGG + chr6_3:33776756-33776775 Msa0948820:CDS 35.0%
CAAATATAAGAGGTAGCTTG+TGG + chr6_3:33776910-33776929 Msa0948820:three_prime_UTR 35.0%
!!! TGTGGTTTTCTGTGTTGTTT+TGG - chr6_3:33774578-33774597 None:intergenic 35.0%
!!! TTTTTGGTGTTTCCTGATGA+TGG + chr6_3:33774880-33774899 Msa0948820:CDS 35.0%
!! TGTGGACCCATTTTAATAAG+TGG + chr6_3:33775173-33775192 Msa0948820:intron 35.0%
GTTATACACAACCGAAATAG+TGG - chr6_3:33775215-33775234 None:intergenic 35.0%
CCCAAACCAAAATTCTTACA+TGG - chr6_3:33775375-33775394 None:intergenic 35.0%
!!! CCTTACATACCGATTTTGTA+AGG - chr6_3:33775410-33775429 None:intergenic 35.0%
CCTTACAAAATCGGTATGTA+AGG + chr6_3:33775407-33775426 Msa0948820:intron 35.0%
CAAAATCGGTATGTAAGGTT+AGG + chr6_3:33775412-33775431 Msa0948820:intron 35.0%
AGTCTCACGTTGGATAAAAA+TGG - chr6_3:33775472-33775491 None:intergenic 35.0%
TGCTATTAAGTTTCCGCTAT+CGG - chr6_3:33775583-33775602 None:intergenic 35.0%
!! CAAAATTGGCTTGTATGTTG+AGG + chr6_3:33775673-33775692 Msa0948820:intron 35.0%
TGCCATATCTCTTCTAATGT+AGG + chr6_3:33775720-33775739 Msa0948820:intron 35.0%
AAAACCACCGCATTAATTGT+AGG - chr6_3:33775786-33775805 None:intergenic 35.0%
TGAAACCATACCTAATGCAA+TGG + chr6_3:33775833-33775852 Msa0948820:intron 35.0%
TCAATCCATTGCATTAGGTA+TGG - chr6_3:33775841-33775860 None:intergenic 35.0%
TCAACTCAATCCATTGCATT+AGG - chr6_3:33775846-33775865 None:intergenic 35.0%
TGTAATCTGTCAAAGTAGCA+AGG + chr6_3:33775921-33775940 Msa0948820:intron 35.0%
TTTGTTCCTAGGTATTTCGT+GGG + chr6_3:33776145-33776164 Msa0948820:intron 35.0%
! ATGTTTCTACTCTACTGTGT+AGG + chr6_3:33776370-33776389 Msa0948820:intron 35.0%
CCATAGAACCACTATATTTG+TGG - chr6_3:33776406-33776425 None:intergenic 35.0%
! CCACAAATATAGTGGTTCTA+TGG + chr6_3:33776403-33776422 Msa0948820:CDS 35.0%
! AATAGATCGATTGATGGTTC+TGG - chr6_3:33776515-33776534 None:intergenic 35.0%
GGATACAATAGATCGATTGA+TGG - chr6_3:33776521-33776540 None:intergenic 35.0%
TCAATCGATCTATTGTATCC+CGG + chr6_3:33776521-33776540 Msa0948820:CDS 35.0%
ACAAGAAACAATGTGATTCC+GGG - chr6_3:33776542-33776561 None:intergenic 35.0%
! GGAATCACATTGTTTCTTGT+AGG + chr6_3:33776542-33776561 Msa0948820:CDS 35.0%
ATAATGATGGTAGAAGTTGC+CGG - chr6_3:33776573-33776592 None:intergenic 35.0%
GAATACAAGATTCCTAAAGG+TGG + chr6_3:33776626-33776645 Msa0948820:CDS 35.0%
AAATCAAACAAGCCACCTTT+AGG - chr6_3:33776641-33776660 None:intergenic 35.0%
TATTCATTCTCTTTCGCCAT+AGG + chr6_3:33776731-33776750 Msa0948820:CDS 35.0%
AAGGTAAAAAGTAGTGCCTA+TGG - chr6_3:33776750-33776769 None:intergenic 35.0%
!!! AGGCACTACTTTTTACCTTT+TGG + chr6_3:33776751-33776770 Msa0948820:CDS 35.0%
!!! GGCACTACTTTTTACCTTTT+GGG + chr6_3:33776752-33776771 Msa0948820:CDS 35.0%
!!! CTACTTTTTACCTTTTGGGT+AGG + chr6_3:33776756-33776775 Msa0948820:CDS 35.0%
CAAATATAAGAGGTAGCTTG+TGG + chr6_3:33776910-33776929 Msa0948820:three_prime_UTR 35.0%
!!! GTTGTTTTGGAACTGTGCTT+TGG - chr6_3:33774565-33774584 None:intergenic 40.0%
GAATAGGAAGTTTAGGAACG+TGG - chr6_3:33774626-33774645 None:intergenic 40.0%
! TGGTGATGAATAGTGATGGT+GGG - chr6_3:33774654-33774673 None:intergenic 40.0%
! ATGGTGGTGATGAATAGTGA+TGG - chr6_3:33774658-33774677 None:intergenic 40.0%
ACATGTTATGACAGACATGG+TGG - chr6_3:33774674-33774693 None:intergenic 40.0%
GACACATGTTATGACAGACA+TGG - chr6_3:33774677-33774696 None:intergenic 40.0%
CAGGTATCAACGAAGTTAGA+GGG + chr6_3:33774710-33774729 Msa0948820:CDS 40.0%
!! TATACTCCTGCTTTTGTTGC+TGG + chr6_3:33774847-33774866 Msa0948820:CDS 40.0%
!! ATCTTTGGTTCTTCAAGGTG+CGG + chr6_3:33774909-33774928 Msa0948820:CDS 40.0%
GGGAATTGACATTGTTACGT+AGG + chr6_3:33775065-33775084 Msa0948820:intron 40.0%
TAATAAGTGGACATCACTCG+TGG + chr6_3:33775186-33775205 Msa0948820:intron 40.0%
AGTAAGCGTGTCCAACAATT+CGG + chr6_3:33775341-33775360 Msa0948820:intron 40.0%
TAACACATAGTCTCGTACCA+AGG + chr6_3:33775528-33775547 Msa0948820:intron 40.0%
GCTATTAAGTTTCCGCTATC+GGG - chr6_3:33775582-33775601 None:intergenic 40.0%
AGCGGAAACTTAATAGCAAG+TGG + chr6_3:33775585-33775604 Msa0948820:intron 40.0%
CTTAATAGCAAGTGGCCAAA+CGG + chr6_3:33775593-33775612 Msa0948820:intron 40.0%
TAGGTTTGTACTTACTGCTG+AGG - chr6_3:33775767-33775786 None:intergenic 40.0%
CAAACCTACAATTAATGCGG+TGG + chr6_3:33775779-33775798 Msa0948820:intron 40.0%
!!! CGGTGGTTTTGACCATAATT+TGG + chr6_3:33775796-33775815 Msa0948820:intron 40.0%
GTTTGTTCCTAGGTATTTCG+TGG + chr6_3:33776144-33776163 Msa0948820:intron 40.0%
CATAATCCCACGAAATACCT+AGG - chr6_3:33776154-33776173 None:intergenic 40.0%
! TTGTTTCTTGTAGGCATCAC+CGG + chr6_3:33776551-33776570 Msa0948820:CDS 40.0%
TTGCATAACTCCTACCCAAA+AGG - chr6_3:33776769-33776788 None:intergenic 40.0%
GCTTGTGGACTTATTTCAGT+TGG + chr6_3:33776925-33776944 Msa0948820:three_prime_UTR 40.0%
!!! GTTGTTTTGGAACTGTGCTT+TGG - chr6_3:33774565-33774584 None:intergenic 40.0%
GAATAGGAAGTTTAGGAACG+TGG - chr6_3:33774626-33774645 None:intergenic 40.0%
! TGGTGATGAATAGTGATGGT+GGG - chr6_3:33774654-33774673 None:intergenic 40.0%
! ATGGTGGTGATGAATAGTGA+TGG - chr6_3:33774658-33774677 None:intergenic 40.0%
ACATGTTATGACAGACATGG+TGG - chr6_3:33774674-33774693 None:intergenic 40.0%
GACACATGTTATGACAGACA+TGG - chr6_3:33774677-33774696 None:intergenic 40.0%
CAGGTATCAACGAAGTTAGA+GGG + chr6_3:33774710-33774729 Msa0948820:CDS 40.0%
!! TATACTCCTGCTTTTGTTGC+TGG + chr6_3:33774847-33774866 Msa0948820:CDS 40.0%
!! ATCTTTGGTTCTTCAAGGTG+CGG + chr6_3:33774909-33774928 Msa0948820:CDS 40.0%
GGGAATTGACATTGTTACGT+AGG + chr6_3:33775065-33775084 Msa0948820:intron 40.0%
TAATAAGTGGACATCACTCG+TGG + chr6_3:33775186-33775205 Msa0948820:intron 40.0%
AGTAAGCGTGTCCAACAATT+CGG + chr6_3:33775341-33775360 Msa0948820:intron 40.0%
TAACACATAGTCTCGTACCA+AGG + chr6_3:33775528-33775547 Msa0948820:intron 40.0%
GCTATTAAGTTTCCGCTATC+GGG - chr6_3:33775582-33775601 None:intergenic 40.0%
AGCGGAAACTTAATAGCAAG+TGG + chr6_3:33775585-33775604 Msa0948820:intron 40.0%
CTTAATAGCAAGTGGCCAAA+CGG + chr6_3:33775593-33775612 Msa0948820:intron 40.0%
TAGGTTTGTACTTACTGCTG+AGG - chr6_3:33775767-33775786 None:intergenic 40.0%
CAAACCTACAATTAATGCGG+TGG + chr6_3:33775779-33775798 Msa0948820:intron 40.0%
!!! CGGTGGTTTTGACCATAATT+TGG + chr6_3:33775796-33775815 Msa0948820:intron 40.0%
GTTTGTTCCTAGGTATTTCG+TGG + chr6_3:33776144-33776163 Msa0948820:intron 40.0%
CATAATCCCACGAAATACCT+AGG - chr6_3:33776154-33776173 None:intergenic 40.0%
! TTGTTTCTTGTAGGCATCAC+CGG + chr6_3:33776551-33776570 Msa0948820:CDS 40.0%
TTGCATAACTCCTACCCAAA+AGG - chr6_3:33776769-33776788 None:intergenic 40.0%
GCTTGTGGACTTATTTCAGT+TGG + chr6_3:33776925-33776944 Msa0948820:three_prime_UTR 40.0%
TAGGAACGTGGAGAATGTCA+TGG - chr6_3:33774614-33774633 None:intergenic 45.0%
!! GTGATGAATAGTGATGGTGG+GGG - chr6_3:33774652-33774671 None:intergenic 45.0%
! GGTGATGAATAGTGATGGTG+GGG - chr6_3:33774653-33774672 None:intergenic 45.0%
! GTGGTGATGAATAGTGATGG+TGG - chr6_3:33774655-33774674 None:intergenic 45.0%
GCAGGTATCAACGAAGTTAG+AGG + chr6_3:33774709-33774728 Msa0948820:CDS 45.0%
ACTCGTGGATCCCACTATTT+CGG + chr6_3:33775201-33775220 Msa0948820:intron 45.0%
TGGTATCAGAGCCGAATTGT+TGG - chr6_3:33775355-33775374 None:intergenic 45.0%
TAGCCTATCCAAGATCCGTT+TGG - chr6_3:33775611-33775630 None:intergenic 45.0%
!! GTTCTGGAAGATTCGATGTG+AGG - chr6_3:33776499-33776518 None:intergenic 45.0%
TGGGTAGGAGTTATGCAACT+AGG + chr6_3:33776771-33776790 Msa0948820:CDS 45.0%
GGAGTTATGCAACTAGGAGA+TGG + chr6_3:33776777-33776796 Msa0948820:CDS 45.0%
TAGGAACGTGGAGAATGTCA+TGG - chr6_3:33774614-33774633 None:intergenic 45.0%
!! GTGATGAATAGTGATGGTGG+GGG - chr6_3:33774652-33774671 None:intergenic 45.0%
! GGTGATGAATAGTGATGGTG+GGG - chr6_3:33774653-33774672 None:intergenic 45.0%
! GTGGTGATGAATAGTGATGG+TGG - chr6_3:33774655-33774674 None:intergenic 45.0%
GCAGGTATCAACGAAGTTAG+AGG + chr6_3:33774709-33774728 Msa0948820:CDS 45.0%
ACTCGTGGATCCCACTATTT+CGG + chr6_3:33775201-33775220 Msa0948820:intron 45.0%
TGGTATCAGAGCCGAATTGT+TGG - chr6_3:33775355-33775374 None:intergenic 45.0%
TAGCCTATCCAAGATCCGTT+TGG - chr6_3:33775611-33775630 None:intergenic 45.0%
!! GTTCTGGAAGATTCGATGTG+AGG - chr6_3:33776499-33776518 None:intergenic 45.0%
TGGGTAGGAGTTATGCAACT+AGG + chr6_3:33776771-33776790 Msa0948820:CDS 45.0%
GGAGTTATGCAACTAGGAGA+TGG + chr6_3:33776777-33776796 Msa0948820:CDS 45.0%
GGGGTGGGAATAGGAAGTTT+AGG - chr6_3:33774633-33774652 None:intergenic 50.0%
!! TGAATAGTGATGGTGGGGGT+GGG - chr6_3:33774648-33774667 None:intergenic 50.0%
!! ATGAATAGTGATGGTGGGGG+TGG - chr6_3:33774649-33774668 None:intergenic 50.0%
TGTGTCTCACTTGCAAACGC+AGG + chr6_3:33774691-33774710 Msa0948820:CDS 50.0%
GGTTCTTCAAGGTGCGGTTA+CGG + chr6_3:33774915-33774934 Msa0948820:CDS 50.0%
CATAGTCTCGTACCAAGGAC+TGG + chr6_3:33775533-33775552 Msa0948820:intron 50.0%
ACACTCTGATGTCCAGTCCT+TGG - chr6_3:33775548-33775567 None:intergenic 50.0%
TAACCCGATTGACCCGATAG+CGG + chr6_3:33775567-33775586 Msa0948820:intron 50.0%
TTTCCGCTATCGGGTCAATC+GGG - chr6_3:33775573-33775592 None:intergenic 50.0%
GTTTCCGCTATCGGGTCAAT+CGG - chr6_3:33775574-33775593 None:intergenic 50.0%
TGGCCAAACGGATCTTGGAT+AGG + chr6_3:33775605-33775624 Msa0948820:intron 50.0%
GGGGTGGGAATAGGAAGTTT+AGG - chr6_3:33774633-33774652 None:intergenic 50.0%
!! TGAATAGTGATGGTGGGGGT+GGG - chr6_3:33774648-33774667 None:intergenic 50.0%
!! ATGAATAGTGATGGTGGGGG+TGG - chr6_3:33774649-33774668 None:intergenic 50.0%
TGTGTCTCACTTGCAAACGC+AGG + chr6_3:33774691-33774710 Msa0948820:CDS 50.0%
GGTTCTTCAAGGTGCGGTTA+CGG + chr6_3:33774915-33774934 Msa0948820:CDS 50.0%
CATAGTCTCGTACCAAGGAC+TGG + chr6_3:33775533-33775552 Msa0948820:intron 50.0%
ACACTCTGATGTCCAGTCCT+TGG - chr6_3:33775548-33775567 None:intergenic 50.0%
TAACCCGATTGACCCGATAG+CGG + chr6_3:33775567-33775586 Msa0948820:intron 50.0%
TTTCCGCTATCGGGTCAATC+GGG - chr6_3:33775573-33775592 None:intergenic 50.0%
GTTTCCGCTATCGGGTCAAT+CGG - chr6_3:33775574-33775593 None:intergenic 50.0%
TGGCCAAACGGATCTTGGAT+AGG + chr6_3:33775605-33775624 Msa0948820:intron 50.0%
GCAGCACCAGCAACAAAAGC+AGG - chr6_3:33774856-33774875 None:intergenic 55.0%
!!! TGCTGGTGCTGCGTCGTTTT+TGG + chr6_3:33774864-33774883 Msa0948820:CDS 55.0%
GCAAGTGGCCAAACGGATCT+TGG + chr6_3:33775600-33775619 Msa0948820:intron 55.0%
GCAGCACCAGCAACAAAAGC+AGG - chr6_3:33774856-33774875 None:intergenic 55.0%
!!! TGCTGGTGCTGCGTCGTTTT+TGG + chr6_3:33774864-33774883 Msa0948820:CDS 55.0%
GCAAGTGGCCAAACGGATCT+TGG + chr6_3:33775600-33775619 Msa0948820:intron 55.0%
!! GTGATGGTGGGGGTGGGAAT+AGG - chr6_3:33774642-33774661 None:intergenic 60.0%
!! GTGATGGTGGGGGTGGGAAT+AGG - chr6_3:33774642-33774661 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 33774557 33776998 33774557 ID=Msa0948820;Name=Msa0948820
chr6_3 mRNA 33774557 33776998 33774557 ID=Msa0948820-mRNA-1;Parent=Msa0948820;Name=Msa0948820-mRNA-1;_AED=0.02;_eAED=0.02;_QI=56|1|1|1|1|1|2|136|273
chr6_3 exon 33774557 33774963 33774557 ID=Msa0948820-mRNA-1:exon:8676;Parent=Msa0948820-mRNA-1
chr6_3 exon 33776392 33776998 33776392 ID=Msa0948820-mRNA-1:exon:8677;Parent=Msa0948820-mRNA-1
chr6_3 five_prime_UTR 33774557 33774612 33774557 ID=Msa0948820-mRNA-1:five_prime_utr;Parent=Msa0948820-mRNA-1
chr6_3 CDS 33774613 33774963 33774613 ID=Msa0948820-mRNA-1:cds;Parent=Msa0948820-mRNA-1
chr6_3 CDS 33776392 33776862 33776392 ID=Msa0948820-mRNA-1:cds;Parent=Msa0948820-mRNA-1
chr6_3 three_prime_UTR 33776863 33776998 33776863 ID=Msa0948820-mRNA-1:three_prime_utr;Parent=Msa0948820-mRNA-1
Gene Sequence

>Msa0948820

ATGACATTCTCCACGTTCCTAAACTTCCTATTCCCACCCCCACCATCACTATTCATCACCACCATGTCTGTCATAACATGTGTCTCACTTGCAAACGCAGGTATCAACGAAGTTAGAGGGAAGCATTTAAACTATTCCAAATTCTGGAACGTAAATAATAACAATGATGAAAAAAAGAAGAAGAAGAAGAAGAAGATGATGAAATTGTCGAGTAAAAGTGGTATGTTGTTGTTGTATACTCCTGCTTTTGTTGCTGGTGCTGCGTCGTTTTTGGTGTTTCCTGATGATGGTTTTAGATCTTTGGTTCTTCAAGGTGCGGTTACGGTTCATTTCTTTAAGAGAGTTTTTGAGGTTCTATTTGTCCACAAATATAGTGGTTCTATGGCTCTTGAAACTGCAATTCCCATAACTCTAAGTTATTTTCTCTCATCTGCAACTATGATCTATGCTCAACACCTCACATCGAATCTTCCAGAACCATCAATCGATCTATTGTATCCCGGAATCACATTGTTTCTTGTAGGCATCACCGGCAACTTCTACCATCATTATCTTCTATCCAAATTAAGAGGAAAAGGTGAAAAAGAATACAAGATTCCTAAAGGTGGCTTGTTTGATTTTGTGATATGTCCTCATTATCTTTTTGAGATCATAGGGTTTTATGGATTTTCGCTCATTTCTCAGACATTGTATTCATTCTCTTTCGCCATAGGCACTACTTTTTACCTTTTGGGTAGGAGTTATGCAACTAGGAGATGGTATCTTTCAAAATTTGATGATTTTCCTAAGAATGTTAAGGCTATTATTCCATTTTTGTTCTAA

Protein sequence

>Msa0948820

MTFSTFLNFLFPPPPSLFITTMSVITCVSLANAGINEVRGKHLNYSKFWNVNNNNDEKKKKKKKKMMKLSSKSGMLLLYTPAFVAGAASFLVFPDDGFRSLVLQGAVTVHFFKRVFEVLFVHKYSGSMALETAIPITLSYFLSSATMIYAQHLTSNLPEPSIDLLYPGITLFLVGITGNFYHHYLLSKLRGKGEKEYKIPKGGLFDFVICPHYLFEIIGFYGFSLISQTLYSFSFAIGTTFYLLGRSYATRRWYLSKFDDFPKNVKAIIPFLF*