Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722730 | XP_003614055.2 | 90.465 | 409 | 14 | 3 | 1 | 384 | 1 | 409 | 0.0 | 725 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722730 | sp|P11869|TPT_SPIOL | 71.176 | 340 | 67 | 2 | 60 | 377 | 70 | 400 | 1.46e-170 | 484 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722730 | G7JWT8 | 90.465 | 409 | 14 | 3 | 1 | 384 | 1 | 409 | 0.0 | 725 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012800 | Msa0722730 | 0.800547 | 1.369637e-48 | -8.615850e-47 |
| Msa0031650 | Msa0722730 | 0.803335 | 3.660720e-49 | -8.615850e-47 |
| Msa0047560 | Msa0722730 | -0.800543 | 1.372073e-48 | -8.615850e-47 |
| Msa0060410 | Msa0722730 | 0.803447 | 3.470782e-49 | -8.615850e-47 |
| Msa0098380 | Msa0722730 | 0.820276 | 7.472272e-53 | -8.615850e-47 |
| Msa0603600 | Msa0722730 | -0.812755 | 3.614369e-51 | -8.615850e-47 |
| Msa0612090 | Msa0722730 | -0.801910 | 7.206049e-49 | -8.615850e-47 |
| Msa0622890 | Msa0722730 | 0.828532 | 8.532544e-55 | -8.615850e-47 |
| Msa0626980 | Msa0722730 | 0.804738 | 1.870039e-49 | -8.615850e-47 |
| Msa0627360 | Msa0722730 | 0.806802 | 6.891690e-50 | -8.615850e-47 |
| Msa0643230 | Msa0722730 | 0.821814 | 3.305364e-53 | -8.615850e-47 |
| Msa0655370 | Msa0722730 | 0.800069 | 1.713410e-48 | -8.615850e-47 |
| Msa0659230 | Msa0722730 | 0.802168 | 6.374709e-49 | -8.615850e-47 |
| Msa0677250 | Msa0722730 | -0.813363 | 2.658038e-51 | -8.615850e-47 |
| Msa0685390 | Msa0722730 | -0.808991 | 2.358782e-50 | -8.615850e-47 |
| Msa0714230 | Msa0722730 | -0.831404 | 1.701822e-55 | -8.615850e-47 |
| Msa0717030 | Msa0722730 | 0.802193 | 6.302372e-49 | -8.615850e-47 |
| Msa0722730 | Msa0743370 | 0.807647 | 4.564548e-50 | -8.615850e-47 |
| Msa0722730 | Msa0747710 | 0.806535 | 7.848748e-50 | -8.615850e-47 |
| Msa0722730 | Msa0755480 | -0.806040 | 9.976336e-50 | -8.615850e-47 |
| Msa0722730 | Msa0767310 | 0.874931 | 4.590999e-68 | -8.615850e-47 |
| Msa0722730 | Msa0790650 | -0.802228 | 6.196176e-49 | -8.615850e-47 |
| Msa0722730 | Msa0792410 | 0.809238 | 2.088412e-50 | -8.615850e-47 |
| Msa0722730 | Msa0814660 | 0.800085 | 1.700743e-48 | -8.615850e-47 |
| Msa0722730 | Msa0840540 | 0.801185 | 1.014521e-48 | -8.615850e-47 |
| Msa0722730 | Msa0846870 | 0.972677 | 3.701300e-135 | -8.615850e-47 |
| Msa0722730 | Msa0847140 | 0.801103 | 1.054265e-48 | -8.615850e-47 |
| Msa0722730 | Msa0890210 | 0.804208 | 2.412493e-49 | -8.615850e-47 |
| Msa0722730 | Msa0904590 | 0.805174 | 1.515882e-49 | -8.615850e-47 |
| Msa0722730 | Msa0941150 | -0.814272 | 1.676835e-51 | -8.615850e-47 |
| Msa0722730 | Msa0961200 | -0.810642 | 1.041356e-50 | -8.615850e-47 |
| Msa0722730 | Msa0973850 | 0.807767 | 4.303706e-50 | -8.615850e-47 |
| Msa0722730 | Msa0974410 | -0.801887 | 7.284572e-49 | -8.615850e-47 |
| Msa0722730 | Msa0985980 | -0.803481 | 3.415466e-49 | -8.615850e-47 |
| Msa0722730 | Msa1019040 | -0.805954 | 1.039930e-49 | -8.615850e-47 |
| Msa0722730 | Msa1019420 | 0.804272 | 2.339203e-49 | -8.615850e-47 |
| Msa0722730 | Msa1042300 | 0.821030 | 5.014478e-53 | -8.615850e-47 |
| Msa0722730 | Msa1085820 | 0.813310 | 2.730313e-51 | -8.615850e-47 |
| Msa0722730 | Msa1191270 | 0.822723 | 2.033824e-53 | -8.615850e-47 |
| Msa0722730 | Msa1205120 | 0.833740 | 4.484300e-56 | -8.615850e-47 |
| Msa0722730 | Msa1211320 | 0.827277 | 1.710145e-54 | -8.615850e-47 |
| Msa0722730 | Msa1259570 | 0.830488 | 2.855777e-55 | -8.615850e-47 |
| Msa0722730 | Msa1265570 | 0.803497 | 3.388422e-49 | -8.615850e-47 |
| Msa0722730 | Msa1265940 | 0.801294 | 9.637934e-49 | -8.615850e-47 |
| Msa0722730 | Msa1273320 | 0.811154 | 8.068564e-51 | -8.615850e-47 |
| Msa0722730 | Msa1287100 | -0.821485 | 3.938630e-53 | -8.615850e-47 |
| Msa0722730 | Msa1295210 | -0.811222 | 7.798519e-51 | -8.615850e-47 |
| Msa0722730 | Msa1321010 | 0.803985 | 2.683548e-49 | -8.615850e-47 |
| Msa0722730 | Msa1334670 | 0.803950 | 2.729826e-49 | -8.615850e-47 |
| Msa0722730 | Msa1344450 | 0.801448 | 8.961857e-49 | -8.615850e-47 |
| Msa0722730 | Msa1377190 | 0.822465 | 2.334810e-53 | -8.615850e-47 |
| Msa0722730 | Msa1417220 | 0.804178 | 2.446490e-49 | -8.615850e-47 |
| Msa0722730 | Msa1431020 | 0.804510 | 2.086361e-49 | -8.615850e-47 |
| Msa0722730 | Msa1437590 | 0.827682 | 1.367373e-54 | -8.615850e-47 |
| Msa0722730 | Msa1462610 | 0.810454 | 1.143762e-50 | -8.615850e-47 |
| Msa0130360 | Msa0722730 | 0.838966 | 2.100887e-57 | -8.615850e-47 |
| Msa0136090 | Msa0722730 | 0.816734 | 4.746988e-52 | -8.615850e-47 |
| Msa0145990 | Msa0722730 | -0.801055 | 1.078259e-48 | -8.615850e-47 |
| Msa0188560 | Msa0722730 | 0.804780 | 1.833089e-49 | -8.615850e-47 |
| Msa0192830 | Msa0722730 | 0.818521 | 1.876584e-52 | -8.615850e-47 |
| Msa0206370 | Msa0722730 | 0.804858 | 1.765010e-49 | -8.615850e-47 |
| Msa0223040 | Msa0722730 | 0.805340 | 1.399540e-49 | -8.615850e-47 |
| Msa0230920 | Msa0722730 | 0.818763 | 1.654458e-52 | -8.615850e-47 |
| Msa0234150 | Msa0722730 | 0.803551 | 3.303069e-49 | -8.615850e-47 |
| Msa0371350 | Msa0722730 | -0.804278 | 2.332525e-49 | -8.615850e-47 |
| Msa0394500 | Msa0722730 | 0.810015 | 1.421885e-50 | -8.615850e-47 |
| Msa0433090 | Msa0722730 | 0.814511 | 1.484134e-51 | -8.615850e-47 |
| Msa0459930 | Msa0722730 | 0.809474 | 1.858855e-50 | -8.615850e-47 |
| Msa0463820 | Msa0722730 | -0.819384 | 1.194892e-52 | -8.615850e-47 |
| Msa0474660 | Msa0722730 | -0.817487 | 3.215137e-52 | -8.615850e-47 |
| Msa0264230 | Msa0722730 | 0.820763 | 5.776606e-53 | -8.615850e-47 |
| Msa0273780 | Msa0722730 | -0.807488 | 4.932682e-50 | -8.615850e-47 |
| Msa0278920 | Msa0722730 | 0.803872 | 2.832676e-49 | -8.615850e-47 |
| Msa0287480 | Msa0722730 | 0.802472 | 5.520177e-49 | -8.615850e-47 |
| Msa0300470 | Msa0722730 | 0.802788 | 4.751383e-49 | -8.615850e-47 |
| Msa0302200 | Msa0722730 | 0.813706 | 2.234320e-51 | -8.615850e-47 |
| Msa0307630 | Msa0722730 | 0.809385 | 1.942730e-50 | -8.615850e-47 |
| Msa0321240 | Msa0722730 | 0.802317 | 5.940383e-49 | -8.615850e-47 |
| Msa0336430 | Msa0722730 | 0.815265 | 1.010011e-51 | -8.615850e-47 |
| Msa0336460 | Msa0722730 | 0.825199 | 5.340615e-54 | -8.615850e-47 |
| Msa0336520 | Msa0722730 | 0.820175 | 7.880637e-53 | -8.615850e-47 |
| Msa0339530 | Msa0722730 | 0.802798 | 4.727574e-49 | -8.615850e-47 |
| Msa0357470 | Msa0722730 | 0.819981 | 8.729151e-53 | -8.615850e-47 |
| Msa0357510 | Msa0722730 | 0.809335 | 1.991294e-50 | -8.615850e-47 |
| Msa0357530 | Msa0722730 | 0.808508 | 2.992263e-50 | -8.615850e-47 |
| Msa0490740 | Msa0722730 | -0.815714 | 8.025418e-52 | -8.615850e-47 |
| Msa0524710 | Msa0722730 | 0.828559 | 8.406847e-55 | -8.615850e-47 |
| Msa0530660 | Msa0722730 | 0.800761 | 1.238627e-48 | -8.615850e-47 |
| Msa0547370 | Msa0722730 | 0.803110 | 4.076747e-49 | -8.615850e-47 |
| Msa0567570 | Msa0722730 | 0.801341 | 9.424027e-49 | -8.615850e-47 |
| Msa0568920 | Msa0722730 | 0.809458 | 1.873730e-50 | -8.615850e-47 |
| Msa0572270 | Msa0722730 | -0.816044 | 6.773044e-52 | -8.615850e-47 |
| Msa0587930 | Msa0722730 | 0.820265 | 7.516169e-53 | -8.615850e-47 |
| Msa0598470 | Msa0722730 | -0.812356 | 4.417927e-51 | -8.615850e-47 |
| Msa0602100 | Msa0722730 | 0.809252 | 2.074475e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722730 | MtrunA17_Chr5g0419001 | 90.465 | 409 | 14 | 3 | 1 | 384 | 1 | 409 | 0.0 | 725 |
| Msa0722730 | MtrunA17_Chr4g0046561 | 70.822 | 353 | 71 | 4 | 51 | 381 | 59 | 401 | 2.80e-171 | 483 |
| Msa0722730 | MtrunA17_Chr3g0097931 | 41.065 | 263 | 146 | 4 | 111 | 368 | 142 | 400 | 2.70e-57 | 192 |
| Msa0722730 | MtrunA17_Chr2g0288011 | 39.706 | 272 | 155 | 3 | 104 | 370 | 129 | 396 | 6.75e-57 | 191 |
| Msa0722730 | MtrunA17_Chr4g0074541 | 40.370 | 270 | 152 | 3 | 104 | 368 | 126 | 391 | 3.49e-55 | 186 |
| Msa0722730 | MtrunA17_Chr2g0291851 | 37.423 | 326 | 170 | 8 | 65 | 365 | 75 | 391 | 2.69e-54 | 184 |
| Msa0722730 | MtrunA17_Chr4g0058971 | 38.610 | 259 | 147 | 3 | 117 | 368 | 123 | 376 | 4.58e-50 | 172 |
| Msa0722730 | MtrunA17_Chr3g0117501 | 38.267 | 277 | 164 | 3 | 106 | 378 | 137 | 410 | 8.56e-49 | 170 |
| Msa0722730 | MtrunA17_Chr6g0449891 | 39.175 | 291 | 158 | 7 | 96 | 379 | 140 | 418 | 1.51e-46 | 164 |
| Msa0722730 | MtrunA17_Chr1g0160071 | 26.407 | 231 | 164 | 2 | 146 | 374 | 85 | 311 | 9.66e-19 | 86.7 |
| Msa0722730 | MtrunA17_Chr3g0114581 | 26.407 | 231 | 164 | 2 | 146 | 374 | 86 | 312 | 1.69e-18 | 85.9 |
| Msa0722730 | MtrunA17_Chr4g0008071 | 28.571 | 308 | 162 | 14 | 91 | 376 | 37 | 308 | 2.63e-13 | 70.1 |
| Msa0722730 | MtrunA17_Chr3g0112981 | 25.850 | 294 | 188 | 10 | 91 | 376 | 49 | 320 | 5.95e-12 | 66.2 |
| Msa0722730 | MtrunA17_Chr5g0436341 | 26.871 | 294 | 185 | 11 | 91 | 376 | 33 | 304 | 1.95e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722730 | AT5G46110.1 | 70.145 | 345 | 71 | 3 | 60 | 381 | 75 | 410 | 1.91e-169 | 479 |
| Msa0722730 | AT5G46110.4 | 70.882 | 340 | 67 | 3 | 60 | 376 | 75 | 405 | 6.79e-169 | 478 |
| Msa0722730 | AT5G46110.2 | 79.078 | 282 | 59 | 0 | 100 | 381 | 16 | 297 | 1.01e-166 | 468 |
| Msa0722730 | AT5G46110.3 | 67.826 | 345 | 68 | 4 | 60 | 381 | 75 | 399 | 7.18e-160 | 455 |
| Msa0722730 | AT5G54800.1 | 36.119 | 335 | 183 | 5 | 61 | 368 | 57 | 387 | 3.41e-58 | 194 |
| Msa0722730 | AT1G61800.1 | 40.370 | 270 | 152 | 3 | 104 | 368 | 122 | 387 | 5.50e-57 | 191 |
| Msa0722730 | AT1G61800.2 | 40.000 | 270 | 153 | 3 | 104 | 368 | 122 | 387 | 1.80e-56 | 190 |
| Msa0722730 | AT5G17630.1 | 39.925 | 268 | 149 | 6 | 114 | 375 | 147 | 408 | 4.44e-55 | 187 |
| Msa0722730 | AT3G01550.1 | 39.350 | 277 | 154 | 3 | 96 | 368 | 106 | 372 | 2.03e-46 | 163 |
| Msa0722730 | AT5G33320.1 | 35.897 | 273 | 168 | 3 | 110 | 378 | 139 | 408 | 1.02e-41 | 151 |
| Msa0722730 | AT3G01550.2 | 37.906 | 277 | 153 | 4 | 96 | 368 | 106 | 367 | 1.74e-40 | 147 |
| Msa0722730 | AT4G03950.1 | 36.626 | 243 | 106 | 12 | 139 | 374 | 58 | 259 | 4.36e-27 | 108 |
| Msa0722730 | AT1G77610.1 | 26.407 | 231 | 164 | 2 | 146 | 374 | 80 | 306 | 1.05e-17 | 84.0 |
| Msa0722730 | AT1G21870.1 | 26.724 | 232 | 164 | 3 | 146 | 375 | 86 | 313 | 1.69e-16 | 80.5 |
| Msa0722730 | AT3G11320.1 | 26.280 | 293 | 188 | 9 | 91 | 376 | 35 | 306 | 1.43e-13 | 71.2 |
| Msa0722730 | AT5G05820.1 | 25.510 | 294 | 191 | 9 | 91 | 377 | 35 | 307 | 1.34e-11 | 65.5 |
Find 89 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATCTAATGGTTGAAATTA+AGG | 0.168763 | 5_1:+20151364 | Msa0722730:three_prime_UTR |
| GGACCCCAACTGATGGAATT+TGG | 0.212279 | 5_1:+20150226 | Msa0722730:CDS |
| CTTTCCTTTATCAGCAATAT+TGG | 0.247686 | 5_1:+20151045 | Msa0722730:three_prime_UTR |
| ATAAATTTATGAGAAGAATT+TGG | 0.273849 | 5_1:+20151079 | Msa0722730:three_prime_UTR |
| AAATTTCCTGCATTGGTTAC+TGG | 0.274557 | 5_1:+20148013 | Msa0722730:CDS |
| GGCCTAAACCCCAGCTAAAA+AGG | 0.277465 | 5_1:-20148482 | None:intergenic |
| TGCTTTAATCACTGAATAGA+TGG | 0.293194 | 5_1:-20150868 | None:intergenic |
| TGATCCAATATTGCTGATAA+AGG | 0.300947 | 5_1:-20151049 | None:intergenic |
| AACATATTCCACTGTCTCTA+TGG | 0.306938 | 5_1:+20149390 | Msa0722730:CDS |
| AAAAGAGTTTCAACCAGTTA+TGG | 0.329715 | 5_1:+20147554 | Msa0722730:CDS |
| CTATCATCAGCCAATGAATA+AGG | 0.337953 | 5_1:+20148852 | Msa0722730:intron |
| ATACTTCAACAATCCATAAC+TGG | 0.344856 | 5_1:-20147567 | None:intergenic |
| TTTCTCACCAAAACTCTTTG+AGG | 0.348207 | 5_1:-20147993 | None:intergenic |
| GGTACTGCTATTGCAATTGC+TGG | 0.350916 | 5_1:+20150840 | Msa0722730:CDS |
| GCAGCTTGCTACTAATACTT+TGG | 0.357987 | 5_1:+20150456 | Msa0722730:intron |
| GCTGCTAAGGCTGCAACAAC+TGG | 0.364005 | 5_1:-20147674 | None:intergenic |
| AAAATGTAGTGAAAACAATA+TGG | 0.366239 | 5_1:+20151281 | Msa0722730:three_prime_UTR |
| TCAGCTTCTCAGTTCGTCTT+AGG | 0.366693 | 5_1:+20149365 | Msa0722730:CDS |
| GTCCAATCCTCAAAGAGTTT+TGG | 0.368718 | 5_1:+20147986 | Msa0722730:CDS |
| CTTTGAACTGATATGAGAAC+TGG | 0.370164 | 5_1:-20147500 | None:intergenic |
| TTTCCAACTGCATGTGTTAG+TGG | 0.372398 | 5_1:-20150490 | None:intergenic |
| CACCAAAACTCTTTGAGGAT+TGG | 0.379697 | 5_1:-20147988 | None:intergenic |
| TAACTGAACTGTCTTTCAAT+TGG | 0.389795 | 5_1:+20149657 | Msa0722730:CDS |
| AAGCTTGGTGTTCTCTCCAT+TGG | 0.390631 | 5_1:+20147619 | Msa0722730:CDS |
| TGTCATTGGATTCTCTATAG+TGG | 0.400424 | 5_1:+20150531 | Msa0722730:CDS |
| TCTCCATTGGTGAAGGCGTT+GGG | 0.401683 | 5_1:+20147632 | Msa0722730:CDS |
| AAATCCAAATTCCATCAGTT+GGG | 0.406228 | 5_1:-20150230 | None:intergenic |
| GGATTCTCTATAGTGGTGTT+TGG | 0.406870 | 5_1:+20150538 | Msa0722730:CDS |
| AACAAGAGCTCCTTATTCAT+TGG | 0.407138 | 5_1:-20148862 | None:intergenic |
| CATCTAATGGTTGAAATTAA+GGG | 0.408534 | 5_1:+20151365 | Msa0722730:three_prime_UTR |
| AATGAACTCACAAGAATTGC+CGG | 0.409784 | 5_1:-20149920 | None:intergenic |
| CTGCAGCCCTTACATCTTAA+CGG | 0.410285 | 5_1:+20151017 | Msa0722730:CDS |
| TTGGATGCTTCTTAGATTGA+AGG | 0.410563 | 5_1:+20150205 | Msa0722730:intron |
| CTCTCCATTGGTGAAGGCGT+TGG | 0.411785 | 5_1:+20147631 | Msa0722730:CDS |
| TAAATCCAAATTCCATCAGT+TGG | 0.423055 | 5_1:-20150231 | None:intergenic |
| GGTGAAATTGAAATCTCTAA+TGG | 0.426650 | 5_1:+20147710 | Msa0722730:CDS |
| TATCTCTTACCTGCATCTAA+TGG | 0.433927 | 5_1:+20151352 | Msa0722730:three_prime_UTR |
| AACAAGATATCCACACAAAC+TGG | 0.434241 | 5_1:+20150813 | Msa0722730:CDS |
| GTGAAATTGAAATCTCTAAT+GGG | 0.435720 | 5_1:+20147711 | Msa0722730:CDS |
| TCTGTTGTACATCTCCTAGT+GGG | 0.441652 | 5_1:+20148447 | Msa0722730:CDS |
| AGAGCGTCCGTTAAGATGTA+AGG | 0.446459 | 5_1:-20151024 | None:intergenic |
| AAACTTTGTCAGTCCTACTT+TGG | 0.455678 | 5_1:-20150266 | None:intergenic |
| AGAAATGCTATTGCCAAAGT+AGG | 0.458021 | 5_1:+20150253 | Msa0722730:CDS |
| GTATAACTCACTGCACGCTT+TGG | 0.465875 | 5_1:-20148507 | None:intergenic |
| AGGATACCTGATTGTAAAGA+TGG | 0.470401 | 5_1:-20150321 | None:intergenic |
| AAAAGCTTACCTAAAACAAC+AGG | 0.477777 | 5_1:-20149425 | None:intergenic |
| AAACTAAAATCCACAGGTAG+TGG | 0.480316 | 5_1:-20151202 | None:intergenic |
| AAATAAGCTGAAGAAATTTG+AGG | 0.480991 | 5_1:-20147524 | None:intergenic |
| TGGTGAGAAATTTCCTGCAT+TGG | 0.485539 | 5_1:+20148006 | Msa0722730:CDS |
| CAATATTCTCTAGTTTCTCT+AGG | 0.488332 | 5_1:+20151307 | Msa0722730:three_prime_UTR |
| GGTGCTAAGCAACTTATGCT+TGG | 0.490402 | 5_1:-20151258 | None:intergenic |
| GAACTGTCTTTCAATTGGAC+TGG | 0.491188 | 5_1:+20149662 | Msa0722730:CDS |
| ATCATCAGCATCTGCTGCTA+AGG | 0.492326 | 5_1:-20147687 | None:intergenic |
| GGTGTTCTCTCCATTGGTGA+AGG | 0.503498 | 5_1:+20147625 | Msa0722730:CDS |
| TAATTTCAACCATTAGATGC+AGG | 0.505150 | 5_1:-20151361 | None:intergenic |
| GTATAGAACACTTCAATATG+AGG | 0.519052 | 5_1:+20147586 | Msa0722730:CDS |
| ATGAACTCACAAGAATTGCC+GGG | 0.520984 | 5_1:-20149919 | None:intergenic |
| TCATGTTATTCCACTACCTG+TGG | 0.521743 | 5_1:+20151192 | Msa0722730:three_prime_UTR |
| AACACTTCAATATGAGGCTA+AGG | 0.522461 | 5_1:+20147592 | Msa0722730:CDS |
| AAGAAACCAGTAACCAATGC+AGG | 0.530659 | 5_1:-20148019 | None:intergenic |
| TCAGCAATATTGGATCAAGT+TGG | 0.532581 | 5_1:+20151055 | Msa0722730:three_prime_UTR |
| AACTGATATGAGAACTGGGT+TGG | 0.544158 | 5_1:-20147495 | None:intergenic |
| CGTTGGGAGTAAGACAAAGA+AGG | 0.550850 | 5_1:+20147648 | Msa0722730:CDS |
| ACTCCCAACGCCTTCACCAA+TGG | 0.553120 | 5_1:-20147635 | None:intergenic |
| CTGTTGTACATCTCCTAGTG+GGG | 0.559205 | 5_1:+20148448 | Msa0722730:CDS |
| TTCACTCTTAGGTGTATCGA+TGG | 0.562553 | 5_1:+20149628 | Msa0722730:intron |
| TTCTGTTGTACATCTCCTAG+TGG | 0.562692 | 5_1:+20148446 | Msa0722730:CDS |
| GATTGAAGGACCCCAACTGA+TGG | 0.572073 | 5_1:+20150219 | Msa0722730:intron |
| TGAGGCTAAGGATTCAAGCT+TGG | 0.575177 | 5_1:+20147604 | Msa0722730:CDS |
| TACCATAAACTAAAATCCAC+AGG | 0.576741 | 5_1:-20151208 | None:intergenic |
| AAAGATAGCCATAGAGACAG+TGG | 0.584706 | 5_1:-20149398 | None:intergenic |
| ATATCCACACAAACTGGCAT+TGG | 0.586556 | 5_1:+20150819 | Msa0722730:CDS |
| AGGGCATGACAAAATGCCAC+TGG | 0.594665 | 5_1:-20148895 | None:intergenic |
| TGTTGTACATCTCCTAGTGG+GGG | 0.597775 | 5_1:+20148449 | Msa0722730:CDS |
| AACTCACTGCACGCTTTGGT+AGG | 0.605690 | 5_1:-20148503 | None:intergenic |
| ATAGAGACAGTGGAATATGT+TGG | 0.609639 | 5_1:-20149388 | None:intergenic |
| AGTACCAATGCCAGTTTGTG+TGG | 0.619792 | 5_1:-20150823 | None:intergenic |
| TTAGCAGCAGATGCTGATGA+TGG | 0.621134 | 5_1:+20147689 | Msa0722730:CDS |
| AACAGCAGCAAATGATACAT+TGG | 0.623207 | 5_1:-20148932 | None:intergenic |
| GAGCGTCCGTTAAGATGTAA+GGG | 0.623605 | 5_1:-20151023 | None:intergenic |
| GATGCAGGTAAGAGATACAG+AGG | 0.624575 | 5_1:-20151346 | None:intergenic |
| GCGCCACTAACACATGCAGT+TGG | 0.626603 | 5_1:+20150487 | Msa0722730:CDS |
| TGAACTCACAAGAATTGCCG+GGG | 0.630819 | 5_1:-20149918 | None:intergenic |
| AATCCAAATTCCATCAGTTG+GGG | 0.641106 | 5_1:-20150229 | None:intergenic |
| CTTGTTACTATTGACTCCAG+TGG | 0.644188 | 5_1:+20148879 | Msa0722730:CDS |
| TTTGAACTGATATGAGAACT+GGG | 0.645733 | 5_1:-20147499 | None:intergenic |
| CATTGGACATGACATGACCA+AGG | 0.673962 | 5_1:-20148915 | None:intergenic |
| ATTGGACATGACATGACCAA+GGG | 0.677416 | 5_1:-20148914 | None:intergenic |
| GAACTCACAAGAATTGCCGG+GGG | 0.732753 | 5_1:-20149917 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAATATAATAATACAC+AGG | - | chr5_1:20148535-20148554 | None:intergenic | 10.0% |
| !!! | TATATATTTTTAAAACAAAC+TGG | + | chr5_1:20148677-20148696 | Msa0722730:intron | 10.0% |
| !!! | CTGTAAAATTTTAAATAATT+TGG | - | chr5_1:20149834-20149853 | None:intergenic | 10.0% |
| !! | ATAAATAAAGAAAAAATTGT+AGG | - | chr5_1:20150934-20150953 | None:intergenic | 10.0% |
| !! | TAATCAAAAGAATTAAGAAA+CGG | - | chr5_1:20147945-20147964 | None:intergenic | 15.0% |
| !! | ATAAAGTTATAGAGTTAATT+TGG | - | chr5_1:20148362-20148381 | None:intergenic | 15.0% |
| !!! | ATAACTTTATAGCTTTTTAT+TGG | + | chr5_1:20148372-20148391 | Msa0722730:intron | 15.0% |
| !! | GAATAGATTAAAACTATATT+CGG | + | chr5_1:20149152-20149171 | Msa0722730:intron | 15.0% |
| !!! | TTATTTAAAATTTTACAGAC+TGG | + | chr5_1:20149836-20149855 | Msa0722730:intron | 15.0% |
| !! | AAAATGAACAAATTATTTGT+AGG | + | chr5_1:20150057-20150076 | Msa0722730:intron | 15.0% |
| !! | AAATGAACAAATTATTTGTA+GGG | + | chr5_1:20150058-20150077 | Msa0722730:intron | 15.0% |
| !! | AAAAATCAATAGTAAAATCA+CGG | - | chr5_1:20150161-20150180 | None:intergenic | 15.0% |
| !!! | CCAAAATTTTAGAATATAAT+GGG | - | chr5_1:20150779-20150798 | None:intergenic | 15.0% |
| !!! | ACCAAAATTTTAGAATATAA+TGG | - | chr5_1:20150780-20150799 | None:intergenic | 15.0% |
| !! | ATAAATTTATGAGAAGAATT+TGG | + | chr5_1:20151079-20151098 | Msa0722730:three_prime_UTR | 15.0% |
| !!! | TGAAAAATGTTTCTAAATAT+TGG | - | chr5_1:20151110-20151129 | None:intergenic | 15.0% |
| !! | TATCTTAATTAAGTACGTAT+AGG | - | chr5_1:20147825-20147844 | None:intergenic | 20.0% |
| !!! | TATTTTAATGTTCCTCATTT+GGG | - | chr5_1:20148155-20148174 | None:intergenic | 20.0% |
| !!! | TTATTTTAATGTTCCTCATT+TGG | - | chr5_1:20148156-20148175 | None:intergenic | 20.0% |
| !!! | GAAATGTTTAATACCTTTTA+TGG | - | chr5_1:20148977-20148996 | None:intergenic | 20.0% |
| !! | AATCTATTCCTAATCAATTT+AGG | - | chr5_1:20149141-20149160 | None:intergenic | 20.0% |
| !! | CTAAATAATATGATTGTGTT+TGG | - | chr5_1:20149244-20149263 | None:intergenic | 20.0% |
| !! | AATTTCATGATTAGTATGTT+TGG | - | chr5_1:20149275-20149294 | None:intergenic | 20.0% |
| !! | ATAAATATATAACTGAGCAT+AGG | - | chr5_1:20149533-20149552 | None:intergenic | 20.0% |
| !!! | GTTTTAAGAATTTGATACAT+AGG | - | chr5_1:20149558-20149577 | None:intergenic | 20.0% |
| !! | TGTATCAAATTCTTAAAACT+TGG | + | chr5_1:20149559-20149578 | Msa0722730:intron | 20.0% |
| !!! | TCTATATTCTAAAAAAGCAA+TGG | + | chr5_1:20149730-20149749 | Msa0722730:CDS | 20.0% |
| !!! | AAGTTGAACAAATTTTTTGT+AGG | + | chr5_1:20150085-20150104 | Msa0722730:intron | 20.0% |
| !!! | AGTTGAACAAATTTTTTGTA+GGG | + | chr5_1:20150086-20150105 | Msa0722730:intron | 20.0% |
| !! | AAAATCAATAGTAAAATCAC+GGG | - | chr5_1:20150160-20150179 | None:intergenic | 20.0% |
| !! | AAGTTAGAAAAAGAATATGA+TGG | - | chr5_1:20150600-20150619 | None:intergenic | 20.0% |
| !! | AGATCATAAACGATATAAAA+TGG | + | chr5_1:20150721-20150740 | Msa0722730:intron | 20.0% |
| !!! | CCCATTATATTCTAAAATTT+TGG | + | chr5_1:20150776-20150795 | Msa0722730:intron | 20.0% |
| !!! | AAAATTTTGGTAACATTTGT+AGG | + | chr5_1:20150789-20150808 | Msa0722730:intron | 20.0% |
| !!! | ATATTGTTTTCACTACATTT+TGG | - | chr5_1:20151282-20151301 | None:intergenic | 20.0% |
| !! | AAAATGTAGTGAAAACAATA+TGG | + | chr5_1:20151281-20151300 | Msa0722730:three_prime_UTR | 20.0% |
| ! | AAATAAGCTGAAGAAATTTG+AGG | - | chr5_1:20147527-20147546 | None:intergenic | 25.0% |
| ! | GTGAAATTGAAATCTCTAAT+GGG | + | chr5_1:20147711-20147730 | Msa0722730:CDS | 25.0% |
| ! | TTTCTCATGATCACATAAAA+AGG | - | chr5_1:20148069-20148088 | None:intergenic | 25.0% |
| ! | AATTATGAAGTTAATCATCG+AGG | - | chr5_1:20148336-20148355 | None:intergenic | 25.0% |
| ! | CGATGATTAACTTCATAATT+AGG | + | chr5_1:20148336-20148355 | Msa0722730:intron | 25.0% |
| !! | TCTTTTACACATACCATAAA+AGG | + | chr5_1:20148961-20148980 | Msa0722730:CDS | 25.0% |
| ! | AATGTTAACAACAAGAACAT+AGG | - | chr5_1:20149022-20149041 | None:intergenic | 25.0% |
| !! | TAAAATTTTACAGACTGGAA+TGG | + | chr5_1:20149841-20149860 | Msa0722730:intron | 25.0% |
| !! | AATTAACCTTTCAGTAGTTT+TGG | - | chr5_1:20149951-20149970 | None:intergenic | 25.0% |
| !! | ACTACTGAAAGGTTAATTTT+AGG | + | chr5_1:20149953-20149972 | Msa0722730:intron | 25.0% |
| !! | CTACTGAAAGGTTAATTTTA+GGG | + | chr5_1:20149954-20149973 | Msa0722730:intron | 25.0% |
| ! | TGAAAATCATGAATTATGCA+AGG | + | chr5_1:20150117-20150136 | Msa0722730:intron | 25.0% |
| TTTGAACTGATATGAGAACT+GGG | - | chr5_1:20147502-20147521 | None:intergenic | 30.0% | |
| ! | TAACTGGTTGAAACTCTTTT+AGG | - | chr5_1:20147554-20147573 | None:intergenic | 30.0% |
| AAAAGAGTTTCAACCAGTTA+TGG | + | chr5_1:20147554-20147573 | Msa0722730:CDS | 30.0% | |
| ATACTTCAACAATCCATAAC+TGG | - | chr5_1:20147570-20147589 | None:intergenic | 30.0% | |
| GTATAGAACACTTCAATATG+AGG | + | chr5_1:20147586-20147605 | Msa0722730:CDS | 30.0% | |
| GGTGAAATTGAAATCTCTAA+TGG | + | chr5_1:20147710-20147729 | Msa0722730:CDS | 30.0% | |
| TCTCAAATTATCAACAGTGT+CGG | - | chr5_1:20147889-20147908 | None:intergenic | 30.0% | |
| GATTATTGATGTCCAATTAC+AGG | + | chr5_1:20147960-20147979 | Msa0722730:intron | 30.0% | |
| ! | CTGGTTTCTTTTTCTTTATG+TGG | + | chr5_1:20148032-20148051 | Msa0722730:CDS | 30.0% |
| AGGAAAACATACTATGGATA+TGG | - | chr5_1:20148316-20148335 | None:intergenic | 30.0% | |
| ATTAGCATAATGTAAAGCGA+AGG | - | chr5_1:20148400-20148419 | None:intergenic | 30.0% | |
| TCTTAGGGTAAACTAGTTAT+TGG | + | chr5_1:20149085-20149104 | Msa0722730:intron | 30.0% | |
| TATTGGAAATTCAAGTGTGA+TGG | + | chr5_1:20149102-20149121 | Msa0722730:intron | 30.0% | |
| GAGACTTTCCTAAATTGATT+AGG | + | chr5_1:20149130-20149149 | Msa0722730:intron | 30.0% | |
| GATTAAAACTATATTCGGTC+CGG | + | chr5_1:20149157-20149176 | Msa0722730:intron | 30.0% | |
| TTTATCACTCTTTGTAGCTT+TGG | + | chr5_1:20149325-20149344 | Msa0722730:intron | 30.0% | |
| AAAAGCTTACCTAAAACAAC+AGG | - | chr5_1:20149428-20149447 | None:intergenic | 30.0% | |
| ! | TGTCCTTTCTTATTTCTTTC+TGG | + | chr5_1:20149447-20149466 | Msa0722730:intron | 30.0% |
| CAACCAGAAAGAAATAAGAA+AGG | - | chr5_1:20149453-20149472 | None:intergenic | 30.0% | |
| CTAATATGAGTTTCACTCTT+AGG | + | chr5_1:20149617-20149636 | Msa0722730:intron | 30.0% | |
| TAACTGAACTGTCTTTCAAT+TGG | + | chr5_1:20149657-20149676 | Msa0722730:CDS | 30.0% | |
| TATGAGCAAAAGTAACAATG+TGG | - | chr5_1:20149770-20149789 | None:intergenic | 30.0% | |
| ! | AAAGCGCTCATTTGTTAATA+AGG | - | chr5_1:20149995-20150014 | None:intergenic | 30.0% |
| ATTTATAGGGACTAAACGTA+GGG | - | chr5_1:20150022-20150041 | None:intergenic | 30.0% | |
| AGTCCCTATAAATGCAAAAT+AGG | + | chr5_1:20150029-20150048 | Msa0722730:intron | 30.0% | |
| GTCCCTATAAATGCAAAATA+GGG | + | chr5_1:20150030-20150049 | Msa0722730:intron | 30.0% | |
| ! | GTCCCTATTTTGCATTTATA+GGG | - | chr5_1:20150035-20150054 | None:intergenic | 30.0% |
| ! | AGTCCCTATTTTGCATTTAT+AGG | - | chr5_1:20150036-20150055 | None:intergenic | 30.0% |
| AAATCCAAATTCCATCAGTT+GGG | - | chr5_1:20150233-20150252 | None:intergenic | 30.0% | |
| TAAATCCAAATTCCATCAGT+TGG | - | chr5_1:20150234-20150253 | None:intergenic | 30.0% | |
| ! | GTTTTACCATCTTTACAATC+AGG | + | chr5_1:20150315-20150334 | Msa0722730:CDS | 30.0% |
| ! | TTGAAGAGAGTTTTTGTCAT+TGG | + | chr5_1:20150517-20150536 | Msa0722730:CDS | 30.0% |
| TCCTATTCTATTTGTTCATG+AGG | + | chr5_1:20150641-20150660 | Msa0722730:intron | 30.0% | |
| ACCTCATGAACAAATAGAAT+AGG | - | chr5_1:20150645-20150664 | None:intergenic | 30.0% | |
| TGCTTTAATCACTGAATAGA+TGG | - | chr5_1:20150871-20150890 | None:intergenic | 30.0% | |
| CTTTCCTTTATCAGCAATAT+TGG | + | chr5_1:20151045-20151064 | Msa0722730:three_prime_UTR | 30.0% | |
| TGATCCAATATTGCTGATAA+AGG | - | chr5_1:20151052-20151071 | None:intergenic | 30.0% | |
| !!! | TACCTGTGGATTTTAGTTTA+TGG | + | chr5_1:20151206-20151225 | Msa0722730:three_prime_UTR | 30.0% |
| TACCATAAACTAAAATCCAC+AGG | - | chr5_1:20151211-20151230 | None:intergenic | 30.0% | |
| ! | CAATATTCTCTAGTTTCTCT+AGG | + | chr5_1:20151307-20151326 | Msa0722730:three_prime_UTR | 30.0% |
| TAATTTCAACCATTAGATGC+AGG | - | chr5_1:20151364-20151383 | None:intergenic | 30.0% | |
| CTTTGAACTGATATGAGAAC+TGG | - | chr5_1:20147503-20147522 | None:intergenic | 35.0% | |
| AACACTTCAATATGAGGCTA+AGG | + | chr5_1:20147592-20147611 | Msa0722730:CDS | 35.0% | |
| CTGTATTCGTGCTTTATAGT+TGG | - | chr5_1:20147853-20147872 | None:intergenic | 35.0% | |
| TTTCTCACCAAAACTCTTTG+AGG | - | chr5_1:20147996-20148015 | None:intergenic | 35.0% | |
| !! | AAATTTCCTGCATTGGTTAC+TGG | + | chr5_1:20148013-20148032 | Msa0722730:CDS | 35.0% |
| TGATCATGAGAAAATCTTCG+AGG | + | chr5_1:20148076-20148095 | Msa0722730:intron | 35.0% | |
| ATGAGAAAATCTTCGAGGTA+AGG | + | chr5_1:20148081-20148100 | Msa0722730:intron | 35.0% | |
| AAGTAGAGCGAAAAGAGAAT+CGG | + | chr5_1:20148126-20148145 | Msa0722730:intron | 35.0% | |
| AAATTGTCCTACTTCTATGC+AGG | + | chr5_1:20148236-20148255 | Msa0722730:intron | 35.0% | |
| TCATCGAGGAAAACATACTA+TGG | - | chr5_1:20148322-20148341 | None:intergenic | 35.0% | |
| GATCGAACAATTGAGACTTT+CGG | + | chr5_1:20148579-20148598 | Msa0722730:intron | 35.0% | |
| ACAATTGAGACTTTCGGATA+AGG | + | chr5_1:20148585-20148604 | Msa0722730:intron | 35.0% | |
| TTTCACAACCAATCTGGATT+AGG | - | chr5_1:20148771-20148790 | None:intergenic | 35.0% | |
| ! | CTTATTCATTGGCTGATGAT+AGG | - | chr5_1:20148854-20148873 | None:intergenic | 35.0% |
| CTATCATCAGCCAATGAATA+AGG | + | chr5_1:20148852-20148871 | Msa0722730:intron | 35.0% | |
| AACAAGAGCTCCTTATTCAT+TGG | - | chr5_1:20148865-20148884 | None:intergenic | 35.0% | |
| AACAGCAGCAAATGATACAT+TGG | - | chr5_1:20148935-20148954 | None:intergenic | 35.0% | |
| ! | TAACTAGTTTACCCTAAGAC+CGG | - | chr5_1:20149084-20149103 | None:intergenic | 35.0% |
| !! | GAAGCTGAAGCATTGAAAAA+TGG | - | chr5_1:20149353-20149372 | None:intergenic | 35.0% |
| ATAGAGACAGTGGAATATGT+TGG | - | chr5_1:20149391-20149410 | None:intergenic | 35.0% | |
| AACATATTCCACTGTCTCTA+TGG | + | chr5_1:20149390-20149409 | Msa0722730:CDS | 35.0% | |
| !!! | TCTTTGACTCCTGTTGTTTT+AGG | + | chr5_1:20149416-20149435 | Msa0722730:CDS | 35.0% |
| AATGAACTCACAAGAATTGC+CGG | - | chr5_1:20149923-20149942 | None:intergenic | 35.0% | |
| TTGCTACCAAAACTACTGAA+AGG | + | chr5_1:20149942-20149961 | Msa0722730:intron | 35.0% | |
| CATTTATAGGGACTAAACGT+AGG | - | chr5_1:20150023-20150042 | None:intergenic | 35.0% | |
| TTGGATGCTTCTTAGATTGA+AGG | + | chr5_1:20150205-20150224 | Msa0722730:intron | 35.0% | |
| AATCCAAATTCCATCAGTTG+GGG | - | chr5_1:20150232-20150251 | None:intergenic | 35.0% | |
| AGAAATGCTATTGCCAAAGT+AGG | + | chr5_1:20150253-20150272 | Msa0722730:CDS | 35.0% | |
| AAACTTTGTCAGTCCTACTT+TGG | - | chr5_1:20150269-20150288 | None:intergenic | 35.0% | |
| ! | AGTTTCTGTCTGATCTTTTC+TGG | + | chr5_1:20150284-20150303 | Msa0722730:CDS | 35.0% |
| AGGATACCTGATTGTAAAGA+TGG | - | chr5_1:20150324-20150343 | None:intergenic | 35.0% | |
| CAACACTTGACTAAAACACA+AGG | - | chr5_1:20150344-20150363 | None:intergenic | 35.0% | |
| TGTCATTGGATTCTCTATAG+TGG | + | chr5_1:20150531-20150550 | Msa0722730:CDS | 35.0% | |
| AACAAGATATCCACACAAAC+TGG | + | chr5_1:20150813-20150832 | Msa0722730:CDS | 35.0% | |
| CAAACATCGAAGAGCAAAAA+CGG | + | chr5_1:20150889-20150908 | Msa0722730:CDS | 35.0% | |
| AAACATCGAAGAGCAAAAAC+GGG | + | chr5_1:20150890-20150909 | Msa0722730:CDS | 35.0% | |
| ATCAAGATGACAAGAGACAT+AGG | - | chr5_1:20150961-20150980 | None:intergenic | 35.0% | |
| TCAGCAATATTGGATCAAGT+TGG | + | chr5_1:20151055-20151074 | Msa0722730:three_prime_UTR | 35.0% | |
| AAACTAAAATCCACAGGTAG+TGG | - | chr5_1:20151205-20151224 | None:intergenic | 35.0% | |
| TATCTCTTACCTGCATCTAA+TGG | + | chr5_1:20151352-20151371 | Msa0722730:three_prime_UTR | 35.0% | |
| AACTGATATGAGAACTGGGT+TGG | - | chr5_1:20147498-20147517 | None:intergenic | 40.0% | |
| AAAGCACGAATACAGACACA+CGG | + | chr5_1:20147858-20147877 | Msa0722730:intron | 40.0% | |
| ! | GTCCAATCCTCAAAGAGTTT+TGG | + | chr5_1:20147986-20148005 | Msa0722730:CDS | 40.0% |
| ! | CACCAAAACTCTTTGAGGAT+TGG | - | chr5_1:20147991-20148010 | None:intergenic | 40.0% |
| TGGTGAGAAATTTCCTGCAT+TGG | + | chr5_1:20148006-20148025 | Msa0722730:CDS | 40.0% | |
| AAGAAACCAGTAACCAATGC+AGG | - | chr5_1:20148022-20148041 | None:intergenic | 40.0% | |
| !! | AGAAGTACCTGCATAGAAGT+AGG | - | chr5_1:20148246-20148265 | None:intergenic | 40.0% |
| TTCTGTTGTACATCTCCTAG+TGG | + | chr5_1:20148446-20148465 | Msa0722730:CDS | 40.0% | |
| TCTGTTGTACATCTCCTAGT+GGG | + | chr5_1:20148447-20148466 | Msa0722730:CDS | 40.0% | |
| !! | TGGTGTATTGCCTTTTTAGC+TGG | + | chr5_1:20148472-20148491 | Msa0722730:CDS | 40.0% |
| !!! | GGTGTATTGCCTTTTTAGCT+GGG | + | chr5_1:20148473-20148492 | Msa0722730:CDS | 40.0% |
| !!! | GTGTATTGCCTTTTTAGCTG+GGG | + | chr5_1:20148474-20148493 | Msa0722730:CDS | 40.0% |
| CAATTGTTCGATCTCTGGTA+CGG | - | chr5_1:20148572-20148591 | None:intergenic | 40.0% | |
| AGTCTCAATTGTTCGATCTC+TGG | - | chr5_1:20148577-20148596 | None:intergenic | 40.0% | |
| ACTTTCGGATAAGGTTCAAC+TGG | + | chr5_1:20148594-20148613 | Msa0722730:intron | 40.0% | |
| ! | GAACCGATTCATGGTTCAAT+CGG | + | chr5_1:20148735-20148754 | Msa0722730:intron | 40.0% |
| AAGCCGATTGAACCATGAAT+CGG | - | chr5_1:20148741-20148760 | None:intergenic | 40.0% | |
| ! | CAGTGTTTTCACAACCAATC+TGG | - | chr5_1:20148777-20148796 | None:intergenic | 40.0% |
| CTTCTAAGTCTCATGTCTGA+AGG | + | chr5_1:20148797-20148816 | Msa0722730:intron | 40.0% | |
| !! | CTTGTTACTATTGACTCCAG+TGG | + | chr5_1:20148879-20148898 | Msa0722730:CDS | 40.0% |
| ATTGGACATGACATGACCAA+GGG | - | chr5_1:20148917-20148936 | None:intergenic | 40.0% | |
| ! | GTGAACATCTTTTGTCTGTC+TGG | + | chr5_1:20149049-20149068 | Msa0722730:intron | 40.0% |
| ! | AACTAGTTTACCCTAAGACC+GGG | - | chr5_1:20149083-20149102 | None:intergenic | 40.0% |
| ! | AGCATGGTTTAGAGTGAATG+AGG | + | chr5_1:20149202-20149221 | Msa0722730:intron | 40.0% |
| AAAGATAGCCATAGAGACAG+TGG | - | chr5_1:20149401-20149420 | None:intergenic | 40.0% | |
| TTCACTCTTAGGTGTATCGA+TGG | + | chr5_1:20149628-20149647 | Msa0722730:intron | 40.0% | |
| GAACTGTCTTTCAATTGGAC+TGG | + | chr5_1:20149662-20149681 | Msa0722730:CDS | 40.0% | |
| ATGAACTCACAAGAATTGCC+GGG | - | chr5_1:20149922-20149941 | None:intergenic | 40.0% | |
| !!! | GTTTGCGACTGATTTGGTTT+TGG | + | chr5_1:20150186-20150205 | Msa0722730:intron | 40.0% |
| ! | CTGTCTGATCTTTTCTGGAT+TGG | + | chr5_1:20150289-20150308 | Msa0722730:CDS | 40.0% |
| !! | GCAGCTTGCTACTAATACTT+TGG | + | chr5_1:20150456-20150475 | Msa0722730:intron | 40.0% |
| TTTCCAACTGCATGTGTTAG+TGG | - | chr5_1:20150493-20150512 | None:intergenic | 40.0% | |
| GGATTCTCTATAGTGGTGTT+TGG | + | chr5_1:20150538-20150557 | Msa0722730:CDS | 40.0% | |
| ATATCCACACAAACTGGCAT+TGG | + | chr5_1:20150819-20150838 | Msa0722730:CDS | 40.0% | |
| TCATGTTATTCCACTACCTG+TGG | + | chr5_1:20151192-20151211 | Msa0722730:three_prime_UTR | 40.0% | |
| TGAGGCTAAGGATTCAAGCT+TGG | + | chr5_1:20147604-20147623 | Msa0722730:CDS | 45.0% | |
| !! | AAGCTTGGTGTTCTCTCCAT+TGG | + | chr5_1:20147619-20147638 | Msa0722730:CDS | 45.0% |
| CGTTGGGAGTAAGACAAAGA+AGG | + | chr5_1:20147648-20147667 | Msa0722730:CDS | 45.0% | |
| ATCATCAGCATCTGCTGCTA+AGG | - | chr5_1:20147690-20147709 | None:intergenic | 45.0% | |
| TTAGCAGCAGATGCTGATGA+TGG | + | chr5_1:20147689-20147708 | Msa0722730:CDS | 45.0% | |
| GGATTGGACAGACCTGTAAT+TGG | - | chr5_1:20147975-20147994 | None:intergenic | 45.0% | |
| GAGAATCGGAATCCCAAATG+AGG | + | chr5_1:20148140-20148159 | Msa0722730:intron | 45.0% | |
| CTGTTGTACATCTCCTAGTG+GGG | + | chr5_1:20148448-20148467 | Msa0722730:CDS | 45.0% | |
| TGTTGTACATCTCCTAGTGG+GGG | + | chr5_1:20148449-20148468 | Msa0722730:CDS | 45.0% | |
| !!! | TGCCTTTTTAGCTGGGGTTT+AGG | + | chr5_1:20148480-20148499 | Msa0722730:CDS | 45.0% |
| GTATAACTCACTGCACGCTT+TGG | - | chr5_1:20148510-20148529 | None:intergenic | 45.0% | |
| CTTAAAACCGGACTGAACTG+CGG | - | chr5_1:20148708-20148727 | None:intergenic | 45.0% | |
| !! | GCAGTTCAGTCCGGTTTTAA+GGG | + | chr5_1:20148707-20148726 | Msa0722730:intron | 45.0% |
| GGTTCTCAGTCCCTTAAAAC+CGG | - | chr5_1:20148720-20148739 | None:intergenic | 45.0% | |
| !! | TGCTGGTTCCTAATCCAGAT+TGG | + | chr5_1:20148760-20148779 | Msa0722730:intron | 45.0% |
| CATTGGACATGACATGACCA+AGG | - | chr5_1:20148918-20148937 | None:intergenic | 45.0% | |
| ! | ACTAGTTTACCCTAAGACCG+GGG | - | chr5_1:20149082-20149101 | None:intergenic | 45.0% |
| ATTCGGTCCGGTTGAAATAG+AGG | + | chr5_1:20149169-20149188 | Msa0722730:intron | 45.0% | |
| TTCGGTCCGGTTGAAATAGA+GGG | + | chr5_1:20149170-20149189 | Msa0722730:intron | 45.0% | |
| TCAGCTTCTCAGTTCGTCTT+AGG | + | chr5_1:20149365-20149384 | Msa0722730:CDS | 45.0% | |
| AATTGCCGGGGGAATACAAA+AGG | - | chr5_1:20149909-20149928 | None:intergenic | 45.0% | |
| TGAACTCACAAGAATTGCCG+GGG | - | chr5_1:20149921-20149940 | None:intergenic | 45.0% | |
| TCGTCAGTTTGCGACTGATT+TGG | + | chr5_1:20150180-20150199 | Msa0722730:intron | 45.0% | |
| AGTACCAATGCCAGTTTGTG+TGG | - | chr5_1:20150826-20150845 | None:intergenic | 45.0% | |
| GGTACTGCTATTGCAATTGC+TGG | + | chr5_1:20150840-20150859 | Msa0722730:CDS | 45.0% | |
| CTGCAGCCCTTACATCTTAA+CGG | + | chr5_1:20151017-20151036 | Msa0722730:CDS | 45.0% | |
| GAGCGTCCGTTAAGATGTAA+GGG | - | chr5_1:20151026-20151045 | None:intergenic | 45.0% | |
| ! | AGAGCGTCCGTTAAGATGTA+AGG | - | chr5_1:20151027-20151046 | None:intergenic | 45.0% |
| GGTGCTAAGCAACTTATGCT+TGG | - | chr5_1:20151261-20151280 | None:intergenic | 45.0% | |
| GATGCAGGTAAGAGATACAG+AGG | - | chr5_1:20151349-20151368 | None:intergenic | 45.0% | |
| GGTGTTCTCTCCATTGGTGA+AGG | + | chr5_1:20147625-20147644 | Msa0722730:CDS | 50.0% | |
| !! | TCTCCATTGGTGAAGGCGTT+GGG | + | chr5_1:20147632-20147651 | Msa0722730:CDS | 50.0% |
| GGCCTAAACCCCAGCTAAAA+AGG | - | chr5_1:20148485-20148504 | None:intergenic | 50.0% | |
| AACTCACTGCACGCTTTGGT+AGG | - | chr5_1:20148506-20148525 | None:intergenic | 50.0% | |
| GGATAAGGTTCAACTGGTCC+AGG | + | chr5_1:20148600-20148619 | Msa0722730:intron | 50.0% | |
| TGGTCCAGGCAGTTGAATCA+CGG | + | chr5_1:20148614-20148633 | Msa0722730:intron | 50.0% | |
| TCAACCGTGATTCAACTGCC+TGG | - | chr5_1:20148621-20148640 | None:intergenic | 50.0% | |
| ! | CGCAGTTCAGTCCGGTTTTA+AGG | + | chr5_1:20148706-20148725 | Msa0722730:intron | 50.0% |
| ! | AGGGACTGAGAACCGATTCA+TGG | + | chr5_1:20148726-20148745 | Msa0722730:intron | 50.0% |
| !! | TCATGGTTCAATCGGCTTGC+TGG | + | chr5_1:20148743-20148762 | Msa0722730:intron | 50.0% |
| AGGGCATGACAAAATGCCAC+TGG | - | chr5_1:20148898-20148917 | None:intergenic | 50.0% | |
| ! | GTGGCATTTTGTCATGCCCT+TGG | + | chr5_1:20148898-20148917 | Msa0722730:CDS | 50.0% |
| TCGGTCCGGTTGAAATAGAG+GGG | + | chr5_1:20149171-20149190 | Msa0722730:intron | 50.0% | |
| TCCGGTTGAAATAGAGGGGA+GGG | + | chr5_1:20149175-20149194 | Msa0722730:intron | 50.0% | |
| TCCCTCCCCTCTATTTCAAC+CGG | - | chr5_1:20149179-20149198 | None:intergenic | 50.0% | |
| TAGAGGGGAGGGATTTAGCA+TGG | + | chr5_1:20149186-20149205 | Msa0722730:intron | 50.0% | |
| GAACTCACAAGAATTGCCGG+GGG | - | chr5_1:20149920-20149939 | None:intergenic | 50.0% | |
| GATTGAAGGACCCCAACTGA+TGG | + | chr5_1:20150219-20150238 | Msa0722730:intron | 50.0% | |
| GGACCCCAACTGATGGAATT+TGG | + | chr5_1:20150226-20150245 | Msa0722730:CDS | 50.0% | |
| ! | GCTGCAGCAGCTTTCTGAAA+TGG | - | chr5_1:20151004-20151023 | None:intergenic | 50.0% |
| ! | CTCTCCATTGGTGAAGGCGT+TGG | + | chr5_1:20147631-20147650 | Msa0722730:CDS | 55.0% |
| ACTCCCAACGCCTTCACCAA+TGG | - | chr5_1:20147638-20147657 | None:intergenic | 55.0% | |
| GCTGCTAAGGCTGCAACAAC+TGG | - | chr5_1:20147677-20147696 | None:intergenic | 55.0% | |
| TGTACATCTCCTAGTGGGGG+TGG | + | chr5_1:20148452-20148471 | Msa0722730:CDS | 55.0% | |
| GGTTGAACCGCAGTTCAGTC+CGG | + | chr5_1:20148698-20148717 | Msa0722730:intron | 55.0% | |
| GTCTGTCTGGTTGCATTCCC+CGG | + | chr5_1:20149062-20149081 | Msa0722730:intron | 55.0% | |
| TGGTTGCATTCCCCGGTCTT+AGG | + | chr5_1:20149069-20149088 | Msa0722730:intron | 55.0% | |
| GGTTGCATTCCCCGGTCTTA+GGG | + | chr5_1:20149070-20149089 | Msa0722730:intron | 55.0% | |
| GTCCGGTTGAAATAGAGGGG+AGG | + | chr5_1:20149174-20149193 | Msa0722730:intron | 55.0% | |
| ! | GCTCGCCTTTTGTATTCCCC+CGG | + | chr5_1:20149901-20149920 | Msa0722730:CDS | 55.0% |
| GCGCCACTAACACATGCAGT+TGG | + | chr5_1:20150487-20150506 | Msa0722730:CDS | 55.0% | |
| GGCAATACACCACCCCCACT+AGG | - | chr5_1:20148464-20148483 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 20147482 | 20151384 | 20147482 | ID=Msa0722730;Name=Msa0722730 |
| chr5_1 | mRNA | 20147482 | 20151384 | 20147482 | ID=Msa0722730-mRNA-1;Parent=Msa0722730;Name=Msa0722730-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.6|0.54|1|1|1|11|348|384 |
| chr5_1 | exon | 20147482 | 20147732 | 20147482 | ID=Msa0722730-mRNA-1:exon:7619;Parent=Msa0722730-mRNA-1 |
| chr5_1 | exon | 20147982 | 20148053 | 20147982 | ID=Msa0722730-mRNA-1:exon:7620;Parent=Msa0722730-mRNA-1 |
| chr5_1 | exon | 20148440 | 20148518 | 20148440 | ID=Msa0722730-mRNA-1:exon:7621;Parent=Msa0722730-mRNA-1 |
| chr5_1 | exon | 20148862 | 20148982 | 20148862 | ID=Msa0722730-mRNA-1:exon:7622;Parent=Msa0722730-mRNA-1 |
| chr5_1 | exon | 20149342 | 20149437 | 20149342 | ID=Msa0722730-mRNA-1:exon:7623;Parent=Msa0722730-mRNA-1 |
| chr5_1 | exon | 20149639 | 20149751 | 20149639 | ID=Msa0722730-mRNA-1:exon:7624;Parent=Msa0722730-mRNA-1 |
| chr5_1 | exon | 20149854 | 20149931 | 20149854 | ID=Msa0722730-mRNA-1:exon:7625;Parent=Msa0722730-mRNA-1 |
| chr5_1 | exon | 20150220 | 20150336 | 20150220 | ID=Msa0722730-mRNA-1:exon:7626;Parent=Msa0722730-mRNA-1 |
| chr5_1 | exon | 20150460 | 20150559 | 20150460 | ID=Msa0722730-mRNA-1:exon:7627;Parent=Msa0722730-mRNA-1 |
| chr5_1 | exon | 20150811 | 20150911 | 20150811 | ID=Msa0722730-mRNA-1:exon:7628;Parent=Msa0722730-mRNA-1 |
| chr5_1 | exon | 20151010 | 20151384 | 20151010 | ID=Msa0722730-mRNA-1:exon:7629;Parent=Msa0722730-mRNA-1 |
| chr5_1 | CDS | 20147482 | 20147732 | 20147482 | ID=Msa0722730-mRNA-1:cds;Parent=Msa0722730-mRNA-1 |
| chr5_1 | CDS | 20147982 | 20148053 | 20147982 | ID=Msa0722730-mRNA-1:cds;Parent=Msa0722730-mRNA-1 |
| chr5_1 | CDS | 20148440 | 20148518 | 20148440 | ID=Msa0722730-mRNA-1:cds;Parent=Msa0722730-mRNA-1 |
| chr5_1 | CDS | 20148862 | 20148982 | 20148862 | ID=Msa0722730-mRNA-1:cds;Parent=Msa0722730-mRNA-1 |
| chr5_1 | CDS | 20149342 | 20149437 | 20149342 | ID=Msa0722730-mRNA-1:cds;Parent=Msa0722730-mRNA-1 |
| chr5_1 | CDS | 20149639 | 20149751 | 20149639 | ID=Msa0722730-mRNA-1:cds;Parent=Msa0722730-mRNA-1 |
| chr5_1 | CDS | 20149854 | 20149931 | 20149854 | ID=Msa0722730-mRNA-1:cds;Parent=Msa0722730-mRNA-1 |
| chr5_1 | CDS | 20150220 | 20150336 | 20150220 | ID=Msa0722730-mRNA-1:cds;Parent=Msa0722730-mRNA-1 |
| chr5_1 | CDS | 20150460 | 20150559 | 20150460 | ID=Msa0722730-mRNA-1:cds;Parent=Msa0722730-mRNA-1 |
| chr5_1 | CDS | 20150811 | 20150911 | 20150811 | ID=Msa0722730-mRNA-1:cds;Parent=Msa0722730-mRNA-1 |
| chr5_1 | CDS | 20151010 | 20151036 | 20151010 | ID=Msa0722730-mRNA-1:cds;Parent=Msa0722730-mRNA-1 |
| chr5_1 | three_prime_UTR | 20151037 | 20151384 | 20151037 | ID=Msa0722730-mRNA-1:three_prime_utr;Parent=Msa0722730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
