AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0278920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0278920 MtrunA17_Chr2g0292271 87.387 333 7 1 159 456 21 353 0.0 576
Msa0278920 MtrunA17_Chr2g0292271 80.645 155 29 1 7 160 195 349 7.61e-81 254
Msa0278920 MtrunA17_Chr2g0292261 71.856 334 57 3 159 456 20 352 2.66e-163 464
Msa0278920 MtrunA17_Chr2g0292261 97.403 154 4 0 7 160 195 348 2.46e-104 314
Msa0278920 MtrunA17_Chr2g0292241 64.985 337 78 5 159 456 20 355 3.36e-146 421
Msa0278920 MtrunA17_Chr2g0292241 66.242 157 50 1 7 160 195 351 2.88e-67 219
Msa0278920 MtrunA17_Chr2g0292211 63.664 333 84 3 160 456 32 363 7.34e-143 413
Msa0278920 MtrunA17_Chr2g0292211 66.883 154 51 0 7 160 206 359 1.07e-66 218
Msa0278920 MtrunA17_Chr2g0292291 64.179 335 81 4 159 456 21 353 2.51e-140 406
Msa0278920 MtrunA17_Chr2g0292291 71.613 155 42 2 7 160 196 349 1.50e-66 217
Msa0278920 MtrunA17_Chr2g0292251 63.063 333 84 4 161 454 21 353 6.93e-140 405
Msa0278920 MtrunA17_Chr2g0292251 68.987 158 45 2 7 160 194 351 1.39e-68 222
Msa0278920 MtrunA17_Chr2g0292181 61.677 334 92 2 159 456 29 362 3.23e-139 404
Msa0278920 MtrunA17_Chr2g0292181 63.399 153 53 1 7 156 204 356 2.52e-60 201
Msa0278920 MtrunA17_Chr2g0291751 60.725 331 93 2 163 456 25 355 4.66e-134 390
Msa0278920 MtrunA17_Chr2g0291751 61.842 152 55 1 7 155 195 346 5.02e-58 194
Msa0278920 MtrunA17_Chr2g0292111 58.929 336 100 3 159 456 20 355 5.57e-129 377
Msa0278920 MtrunA17_Chr2g0292111 59.740 154 59 1 7 157 195 348 1.36e-54 186
Msa0278920 MtrunA17_Chr2g0292151 58.209 335 103 3 159 456 20 354 1.11e-127 374
Msa0278920 MtrunA17_Chr2g0292151 61.039 154 56 2 7 157 195 347 4.08e-56 189
Msa0278920 MtrunA17_Chr2g0292091 57.798 327 99 2 165 456 22 344 3.63e-123 362
Msa0278920 MtrunA17_Chr2g0292091 63.087 149 54 1 7 154 190 338 1.09e-57 193
Msa0278920 MtrunA17_Chr2g0292101 57.492 327 100 2 165 456 23 345 1.04e-119 353
Msa0278920 MtrunA17_Chr2g0292101 66.452 155 47 2 7 160 191 341 4.08e-60 200
Msa0278920 MtrunA17_Chr7g0258811 53.896 308 106 1 163 434 65 372 5.69e-107 322
Msa0278920 MtrunA17_Chr7g0258811 61.314 137 53 0 7 143 236 372 1.10e-49 173
Msa0278920 MtrunA17_Chr1g0175561 52.922 308 109 1 163 434 20 327 3.21e-104 313
Msa0278920 MtrunA17_Chr1g0175561 60.584 137 54 0 7 143 191 327 8.64e-50 172
Msa0278920 MtrunA17_Chr2g0292281 66.953 233 65 3 224 456 17 237 2.07e-100 300
Msa0278920 MtrunA17_Chr2g0292281 72.078 154 32 3 7 160 91 233 4.36e-67 214
Msa0278920 MtrunA17_Chr4g0070951 47.039 304 126 2 165 433 26 329 1.63e-81 255
Msa0278920 MtrunA17_Chr4g0070951 51.449 138 65 1 7 142 192 329 8.26e-36 135
Msa0278920 MtrunA17_Chr2g0299691 44.079 304 134 2 166 433 55 358 7.32e-80 251
Msa0278920 MtrunA17_Chr2g0299691 46.043 139 72 1 7 142 220 358 5.57e-32 125
Msa0278920 MtrunA17_Chr8g0372601 43.709 302 134 2 167 433 30 330 6.53e-78 246
Msa0278920 MtrunA17_Chr8g0372601 43.382 136 76 1 7 142 196 330 2.29e-26 108
Msa0278920 MtrunA17_Chr5g0404721 43.377 302 135 2 167 433 30 330 1.56e-77 244
Msa0278920 MtrunA17_Chr5g0404721 44.853 136 74 1 7 142 196 330 2.56e-27 111
Msa0278920 MtrunA17_Chr7g0244461 42.071 309 135 3 160 433 13 312 1.07e-75 239
Msa0278920 MtrunA17_Chr7g0244461 38.971 136 74 2 7 142 186 312 1.13e-24 103
Msa0278920 MtrunA17_Chr2g0320031 42.295 305 133 3 164 433 23 319 5.65e-73 232
Msa0278920 MtrunA17_Chr2g0320031 42.336 137 69 3 7 142 192 319 3.90e-24 102
Msa0278920 MtrunA17_Chr3g0129051 45.277 307 122 4 164 433 25 322 7.26e-73 232
Msa0278920 MtrunA17_Chr3g0129051 44.776 134 63 3 7 138 194 318 1.70e-23 100
Msa0278920 MtrunA17_Chr4g0013171 43.092 304 127 5 167 433 27 321 1.12e-72 232
Msa0278920 MtrunA17_Chr4g0013171 43.382 136 68 2 7 142 195 321 8.44e-26 107
Msa0278920 MtrunA17_Chr5g0402571 41.424 309 142 4 161 433 21 326 6.27e-72 230
Msa0278920 MtrunA17_Chr5g0402571 43.066 137 75 2 7 142 192 326 3.09e-27 111
Msa0278920 MtrunA17_Chr4g0038171 43.506 308 129 4 164 433 21 321 1.05e-71 229
Msa0278920 MtrunA17_Chr4g0038171 40.288 139 73 3 7 142 190 321 1.37e-20 92.4
Msa0278920 MtrunA17_Chr4g0038161 44.156 308 126 4 164 433 21 320 1.70e-71 229
Msa0278920 MtrunA17_Chr4g0038161 42.446 139 69 3 7 142 190 320 4.92e-21 93.6
Msa0278920 MtrunA17_Chr2g0320071 41.176 306 136 3 163 433 21 317 1.93e-71 228
Msa0278920 MtrunA17_Chr2g0320071 42.647 136 69 2 7 142 191 317 1.89e-26 108
Msa0278920 MtrunA17_Chr4g0038151 43.831 308 127 4 164 433 22 321 4.45e-71 228
Msa0278920 MtrunA17_Chr4g0038151 42.446 139 69 4 7 142 191 321 4.22e-20 90.9
Msa0278920 MtrunA17_Chr5g0438021 42.532 308 131 4 163 433 27 325 8.56e-71 227
Msa0278920 MtrunA17_Chr5g0438021 40.876 137 70 3 8 142 198 325 9.25e-20 90.1
Msa0278920 MtrunA17_Chr4g0043391 43.182 308 130 4 164 433 24 324 1.74e-70 226
Msa0278920 MtrunA17_Chr4g0043391 42.446 139 70 4 7 142 193 324 6.12e-21 93.2
Msa0278920 MtrunA17_Chr5g0402581 42.295 305 137 4 165 433 25 326 1.83e-70 226
Msa0278920 MtrunA17_Chr5g0402581 45.255 137 72 2 7 142 192 326 5.03e-29 116
Msa0278920 MtrunA17_Chr4g0013201 41.447 304 134 3 165 433 44 338 3.90e-70 226
Msa0278920 MtrunA17_Chr4g0013201 44.118 136 67 2 7 142 212 338 1.28e-25 107
Msa0278920 MtrunA17_Chr3g0114451 42.574 303 130 3 166 433 25 318 4.98e-70 225
Msa0278920 MtrunA17_Chr3g0114451 38.971 136 74 2 7 142 192 318 1.31e-21 95.1
Msa0278920 MtrunA17_Chr2g0320091 41.368 307 135 4 163 433 21 318 6.94e-70 224
Msa0278920 MtrunA17_Chr2g0320091 43.066 137 68 3 7 142 191 318 1.46e-24 103
Msa0278920 MtrunA17_Chr2g0320061 40.523 306 139 3 163 433 21 318 2.28e-69 223
Msa0278920 MtrunA17_Chr2g0320061 40.441 136 73 2 7 142 191 318 1.81e-25 106
Msa0278920 MtrunA17_Chr2g0320101 40.850 306 137 3 163 433 21 317 2.95e-69 223
Msa0278920 MtrunA17_Chr2g0320101 44.526 137 65 3 7 142 191 317 4.46e-26 107
Msa0278920 MtrunA17_Chr2g0320051 41.176 306 137 3 163 433 21 318 4.28e-69 222
Msa0278920 MtrunA17_Chr2g0320051 39.706 136 74 2 7 142 191 318 1.94e-23 100
Msa0278920 MtrunA17_Chr3g0106921 41.748 309 133 5 163 433 21 320 1.16e-68 221
Msa0278920 MtrunA17_Chr3g0106921 42.029 138 69 3 7 142 192 320 9.97e-23 98.6
Msa0278920 MtrunA17_Chr4g0013181 41.667 300 129 5 171 433 63 353 3.06e-68 221
Msa0278920 MtrunA17_Chr4g0013181 41.912 136 70 2 7 142 227 353 5.73e-24 102
Msa0278920 MtrunA17_Chr4g0013191 41.026 312 137 5 160 433 38 340 2.87e-67 218
Msa0278920 MtrunA17_Chr4g0013191 44.203 138 66 4 7 142 212 340 1.68e-23 100
Msa0278920 MtrunA17_Chr3g0129061 44.156 308 126 4 163 433 24 322 4.37e-67 217
Msa0278920 MtrunA17_Chr3g0129061 41.791 134 67 3 7 138 194 318 4.65e-21 93.6
Msa0278920 MtrunA17_Chr1g0155611 40.397 302 145 1 167 433 46 347 6.26e-67 218
Msa0278920 MtrunA17_Chr1g0155611 40.441 136 81 0 7 142 212 347 1.17e-23 101
Msa0278920 MtrunA17_Chr7g0244451 41.118 304 135 3 165 433 22 316 4.01e-66 214
Msa0278920 MtrunA17_Chr7g0244451 42.647 136 69 2 7 142 190 316 1.02e-24 103
Msa0278920 MtrunA17_Chr5g0432441 41.234 308 133 5 165 433 28 326 6.86e-66 214
Msa0278920 MtrunA17_Chr5g0432441 41.135 141 67 4 7 142 197 326 3.67e-22 97.1
Msa0278920 MtrunA17_Chr3g0107881 41.100 309 137 4 163 433 23 324 1.21e-65 214
Msa0278920 MtrunA17_Chr3g0107881 42.647 136 71 2 7 142 196 324 2.31e-22 97.4
Msa0278920 MtrunA17_Chr3g0129041 43.831 308 127 4 163 433 24 322 1.58e-65 213
Msa0278920 MtrunA17_Chr3g0129041 41.304 138 70 3 7 142 194 322 7.01e-20 90.1
Msa0278920 MtrunA17_Chr5g0400331 40.594 303 141 3 170 433 29 331 1.87e-65 213
Msa0278920 MtrunA17_Chr5g0400331 41.429 140 78 2 7 142 192 331 5.57e-23 99.4
Msa0278920 MtrunA17_Chr4g0063671 38.889 306 148 5 164 433 18 320 4.51e-65 212
Msa0278920 MtrunA17_Chr4g0063671 44.056 143 73 3 5 142 180 320 7.62e-28 112
Msa0278920 MtrunA17_Chr2g0279041 40.604 298 139 4 171 433 31 325 7.90e-64 209
Msa0278920 MtrunA17_Chr2g0279041 37.681 138 84 1 7 142 188 325 3.41e-22 97.1
Msa0278920 MtrunA17_Chr2g0322861 39.542 306 148 4 163 433 83 386 1.36e-63 210
Msa0278920 MtrunA17_Chr2g0322861 44.928 138 72 3 7 142 251 386 3.65e-26 109
Msa0278920 MtrunA17_Chr5g0432351 39.482 309 141 5 165 435 23 323 4.32e-63 207
Msa0278920 MtrunA17_Chr5g0432351 37.956 137 77 2 8 144 195 323 3.35e-18 85.5
Msa0278920 MtrunA17_Chr7g0268501 39.274 303 141 4 167 433 25 320 8.44e-63 206
Msa0278920 MtrunA17_Chr7g0268501 45.588 136 71 2 7 142 188 320 1.20e-27 112
Msa0278920 MtrunA17_Chr7g0268521 39.274 303 141 4 167 433 25 320 8.44e-63 206
Msa0278920 MtrunA17_Chr7g0268521 45.588 136 71 2 7 142 188 320 1.20e-27 112
Msa0278920 MtrunA17_Chr4g0068621 38.284 303 147 4 167 433 38 336 8.69e-63 206
Msa0278920 MtrunA17_Chr4g0068621 38.686 137 79 3 7 142 204 336 9.04e-20 90.1
Msa0278920 MtrunA17_Chr5g0432341 39.414 307 140 5 165 433 23 321 8.72e-63 206
Msa0278920 MtrunA17_Chr5g0432341 37.037 135 77 2 8 142 195 321 1.53e-18 86.3
Msa0278920 MtrunA17_Chr5g0401431 36.688 308 155 3 163 432 23 328 3.43e-61 202
Msa0278920 MtrunA17_Chr5g0401431 39.259 135 80 1 7 141 196 328 2.90e-26 108
Msa0278920 MtrunA17_Chr4g0024121 37.908 306 153 3 163 433 23 326 4.23e-61 202
Msa0278920 MtrunA17_Chr4g0024121 40.146 137 79 3 7 142 192 326 1.51e-24 103
Msa0278920 MtrunA17_Chr6g0467161 38.854 314 139 6 163 433 33 336 6.10e-61 202
Msa0278920 MtrunA17_Chr6g0467161 45.588 136 65 3 7 142 210 336 9.02e-27 110
Msa0278920 MtrunA17_Chr3g0106901 37.459 307 148 3 162 433 26 323 9.48e-61 201
Msa0278920 MtrunA17_Chr3g0106901 36.765 136 77 2 7 142 197 323 3.52e-20 91.3
Msa0278920 MtrunA17_Chr5g0405991 38.255 298 141 7 171 433 27 316 1.10e-60 200
Msa0278920 MtrunA17_Chr5g0405991 39.706 136 74 5 8 142 188 316 3.94e-20 90.9
Msa0278920 MtrunA17_Chr4g0013821 34.877 324 164 5 167 455 28 339 1.92e-60 201
Msa0278920 MtrunA17_Chr4g0013821 33.577 137 86 3 7 143 194 325 2.38e-17 83.2
Msa0278920 MtrunA17_Chr5g0432331 39.414 307 140 5 165 433 54 352 2.14e-60 201
Msa0278920 MtrunA17_Chr5g0432331 37.778 135 76 2 8 142 226 352 2.28e-17 83.2
Msa0278920 MtrunA17_Chr3g0128061 36.482 307 157 3 163 433 22 326 2.51e-60 200
Msa0278920 MtrunA17_Chr3g0128061 42.336 137 76 2 7 142 192 326 2.02e-26 108
Msa0278920 MtrunA17_Chr1g0213061 38.188 309 145 5 163 434 23 322 3.20e-60 199
Msa0278920 MtrunA17_Chr1g0213061 39.568 139 74 4 7 143 192 322 1.14e-19 89.7
Msa0278920 MtrunA17_Chr1g0204011 37.459 307 151 5 162 433 22 322 7.31e-60 198
Msa0278920 MtrunA17_Chr1g0204011 38.235 136 78 3 8 142 192 322 7.26e-19 87.4
Msa0278920 MtrunA17_Chr1g0148021 37.705 305 151 3 166 433 26 328 1.88e-59 197
Msa0278920 MtrunA17_Chr1g0148021 40.441 136 79 1 7 142 195 328 2.70e-25 105
Msa0278920 MtrunA17_Chr7g0225221 38.944 303 144 3 166 433 24 320 3.58e-59 196
Msa0278920 MtrunA17_Chr7g0225221 39.706 136 76 2 7 142 191 320 2.47e-22 97.4
Msa0278920 MtrunA17_Chr4g0013721 36.275 306 155 4 163 433 96 396 4.22e-59 199
Msa0278920 MtrunA17_Chr4g0013721 35.294 136 83 3 7 142 266 396 3.51e-18 86.3
Msa0278920 MtrunA17_Chr4g0076211 38.776 294 142 5 172 433 46 333 2.02e-58 195
Msa0278920 MtrunA17_Chr4g0076211 43.066 137 72 3 7 142 202 333 2.53e-26 108
Msa0278920 MtrunA17_Chr4g0072091 37.954 303 151 3 166 433 23 323 8.61e-58 193
Msa0278920 MtrunA17_Chr4g0072091 42.424 132 74 1 7 138 190 319 3.81e-24 102
Msa0278920 MtrunA17_Chr8g0371381 37.417 302 146 7 167 433 26 319 3.02e-57 191
Msa0278920 MtrunA17_Chr8g0371381 41.135 141 65 6 8 142 191 319 5.11e-20 90.5
Msa0278920 MtrunA17_Chr4g0053871 38.141 312 147 5 160 432 19 323 3.59e-57 191
Msa0278920 MtrunA17_Chr4g0053871 38.235 136 75 3 7 141 196 323 3.23e-19 88.2
Msa0278920 MtrunA17_Chr6g0467121 39.003 341 157 9 147 452 54 378 5.57e-57 193
Msa0278920 MtrunA17_Chr6g0467121 48.175 137 62 3 7 143 237 364 1.10e-27 113
Msa0278920 MtrunA17_Chr1g0157051 36.667 300 150 4 167 432 24 317 1.85e-56 189
Msa0278920 MtrunA17_Chr1g0157051 36.170 141 71 5 8 141 189 317 6.66e-14 72.4
Msa0278920 MtrunA17_Chr5g0421411 37.943 282 131 5 193 433 7 285 9.28e-56 186
Msa0278920 MtrunA17_Chr5g0421411 35.664 143 81 6 7 142 147 285 4.87e-17 81.3
Msa0278920 MtrunA17_Chr2g0296621 38.047 297 145 6 170 434 53 342 1.24e-55 188
Msa0278920 MtrunA17_Chr2g0296621 44.928 138 69 4 7 143 211 342 2.14e-24 103
Msa0278920 MtrunA17_Chr7g0254201 34.416 308 160 5 160 433 13 312 1.77e-55 187
Msa0278920 MtrunA17_Chr7g0254201 36.232 138 82 3 5 142 181 312 1.75e-19 89.0
Msa0278920 MtrunA17_Chr4g0075241 35.738 305 154 5 166 433 28 327 3.82e-55 186
Msa0278920 MtrunA17_Chr4g0075241 38.571 140 79 4 5 142 193 327 1.57e-18 86.3
Msa0278920 MtrunA17_Chr1g0194151 35.256 312 157 5 163 433 26 333 2.97e-54 184
Msa0278920 MtrunA17_Chr1g0194151 34.058 138 87 2 7 142 198 333 1.26e-18 86.7
Msa0278920 MtrunA17_Chr1g0197411 33.013 312 165 4 162 433 23 330 4.77e-52 178
Msa0278920 MtrunA17_Chr1g0197411 37.589 141 85 2 7 146 196 334 3.40e-21 94.4
Msa0278920 MtrunA17_Chr2g0278671 37.013 308 153 6 163 433 20 323 5.27e-52 178
Msa0278920 MtrunA17_Chr2g0278671 35.461 141 83 4 7 142 186 323 6.78e-13 69.3
Msa0278920 MtrunA17_Chr6g0477071 33.553 304 156 5 164 433 51 342 1.84e-51 177
Msa0278920 MtrunA17_Chr6g0477071 38.971 136 72 3 7 142 218 342 4.68e-19 88.2
Msa0278920 MtrunA17_Chr1g0194271 34.700 317 159 5 163 433 26 340 2.30e-51 177
Msa0278920 MtrunA17_Chr1g0194271 33.793 145 85 3 7 142 198 340 1.31e-17 84.0
Msa0278920 MtrunA17_Chr2g0279061 44.196 224 118 3 214 433 46 266 3.28e-51 174
Msa0278920 MtrunA17_Chr2g0279061 37.956 137 83 1 8 142 130 266 8.68e-23 97.4
Msa0278920 MtrunA17_Chr7g0224371 33.974 312 160 5 159 434 22 323 3.50e-51 176
Msa0278920 MtrunA17_Chr7g0224371 35.036 137 79 4 7 143 197 323 2.71e-15 76.6
Msa0278920 MtrunA17_Chr4g0046131 34.754 305 157 4 166 430 41 343 4.77e-51 176
Msa0278920 MtrunA17_Chr4g0046131 43.704 135 72 3 7 139 211 343 7.39e-28 113
Msa0278920 MtrunA17_Chr6g0467251 34.940 332 168 6 147 441 16 336 6.81e-51 176
Msa0278920 MtrunA17_Chr6g0467251 40.152 132 70 3 7 138 202 324 2.55e-20 92.0
Msa0278920 MtrunA17_Chr4g0004591 35.294 289 160 5 164 432 74 355 7.38e-51 176
Msa0278920 MtrunA17_Chr4g0004591 35.032 157 79 4 5 141 202 355 2.06e-15 77.4
Msa0278920 MtrunA17_Chr1g0188431 32.558 301 157 5 167 433 39 327 2.35e-49 171
Msa0278920 MtrunA17_Chr1g0188431 34.559 136 78 3 7 142 203 327 2.59e-15 76.6
Msa0278920 MtrunA17_Chr2g0329641 32.051 312 165 6 162 433 31 335 9.76e-49 169
Msa0278920 MtrunA17_Chr2g0329641 39.860 143 79 3 5 142 195 335 3.72e-23 100
Msa0278920 MtrunA17_Chr8g0364291 32.051 312 169 4 161 433 17 324 1.28e-48 169
Msa0278920 MtrunA17_Chr8g0364291 38.129 139 79 3 7 142 190 324 3.99e-21 94.0
Msa0278920 MtrunA17_Chr7g0254231 34.211 304 149 7 167 433 22 311 2.65e-48 168
Msa0278920 MtrunA17_Chr7g0254231 34.058 138 82 4 5 142 183 311 5.78e-12 66.6
Msa0278920 MtrunA17_Chr6g0460711 35.806 310 154 6 160 433 14 314 5.88e-48 167
Msa0278920 MtrunA17_Chr6g0460711 34.559 136 84 3 7 142 184 314 1.70e-13 71.2
Msa0278920 MtrunA17_Chr3g0136751 36.755 302 156 4 165 433 23 322 6.02e-48 167
Msa0278920 MtrunA17_Chr3g0136751 38.406 138 81 2 7 142 187 322 5.94e-19 87.4
Msa0278920 MtrunA17_Chr1g0164891 34.106 302 158 4 171 433 93 392 3.50e-47 167
Msa0278920 MtrunA17_Chr1g0164891 38.406 138 80 3 7 142 258 392 1.88e-21 95.9
Msa0278920 MtrunA17_Chr3g0114461 46.316 190 94 2 244 433 11 192 3.72e-47 161
Msa0278920 MtrunA17_Chr3g0114461 39.706 136 74 3 7 142 65 192 1.45e-20 89.4
Msa0278920 MtrunA17_Chr5g0413051 31.111 315 169 7 162 433 68 377 1.64e-44 159
Msa0278920 MtrunA17_Chr5g0413051 34.459 148 86 5 1 142 235 377 8.55e-17 82.0
Msa0278920 MtrunA17_Chr2g0316481 31.325 332 160 5 167 432 76 405 3.31e-44 159
Msa0278920 MtrunA17_Chr2g0316791 31.024 332 161 5 167 432 76 405 1.35e-43 158
Msa0278920 MtrunA17_Chr2g0316791 29.697 165 84 4 5 139 241 403 4.90e-13 70.5
Msa0278920 MtrunA17_Chr6g0451571 31.392 309 170 4 163 433 30 334 2.76e-43 155
Msa0278920 MtrunA17_Chr6g0451571 33.577 137 86 3 7 142 202 334 4.67e-14 73.2
Msa0278920 MtrunA17_Chr5g0432401 33.117 308 121 5 163 432 25 285 8.09e-43 152
Msa0278920 MtrunA17_Chr5g0432401 38.211 123 68 2 26 141 164 285 6.67e-16 77.8
Msa0278920 MtrunA17_Chr2g0316191 30.330 333 163 5 167 432 76 406 3.53e-42 154
Msa0278920 MtrunA17_Chr2g0316191 30.120 166 83 5 5 139 241 404 5.89e-13 70.5
Msa0278920 MtrunA17_Chr2g0311251 31.214 346 164 8 153 432 2 339 4.02e-42 152
Msa0278920 MtrunA17_Chr2g0311251 30.539 167 84 4 5 141 175 339 3.12e-14 73.6
Msa0278920 MtrunA17_Chr2g0316831 30.120 332 164 5 167 432 112 441 1.22e-41 153
Msa0278920 MtrunA17_Chr2g0316831 30.061 163 84 4 5 138 277 438 3.78e-13 71.2
Msa0278920 MtrunA17_Chr2g0311241 28.312 385 163 7 154 432 52 429 3.12e-38 144
Msa0278920 MtrunA17_Chr2g0311241 30.539 167 84 4 5 141 265 429 9.30e-14 72.8
Msa0278920 MtrunA17_Chr1g0181511 30.097 309 172 4 164 435 24 325 2.73e-36 136
Msa0278920 MtrunA17_Chr1g0181511 35.664 143 82 4 5 144 190 325 5.84e-15 75.9
Msa0278920 MtrunA17_Chr1g0181481 29.870 308 172 4 165 435 25 325 5.36e-33 127
Msa0278920 MtrunA17_Chr1g0181481 34.266 143 84 3 5 144 190 325 6.65e-15 75.5
Msa0278920 MtrunA17_Chr1g0181431 29.221 308 174 4 165 435 25 325 5.81e-33 127
Msa0278920 MtrunA17_Chr1g0181431 34.266 143 84 3 5 144 190 325 7.78e-15 75.5
Msa0278920 MtrunA17_Chr4g0074851 28.667 300 170 4 171 433 36 328 4.01e-32 125
Msa0278920 MtrunA17_Chr4g0074851 33.333 141 84 3 5 142 195 328 2.04e-14 74.3
Msa0278920 MtrunA17_Chr2g0316141 31.076 251 122 6 213 432 47 277 5.58e-25 103
Msa0278920 MtrunA17_Chr2g0316181 31.076 251 122 6 213 432 47 277 5.58e-25 103
Msa0278920 MtrunA17_Chr2g0316811 30.667 225 105 3 167 340 50 274 1.00e-23 101
Msa0278920 MtrunA17_Chr5g0432321 40.323 124 66 2 253 376 17 132 3.21e-21 89.4
Msa0278920 MtrunA17_Chr1g0181501 30.102 196 122 5 245 435 6 191 1.03e-19 87.0
Msa0278920 MtrunA17_Chr1g0181501 34.965 143 83 3 5 144 56 191 7.56e-18 81.6
Msa0278920 MtrunA17_Chr3g0104101 36.806 144 82 4 296 433 9 149 1.11e-19 85.5
Msa0278920 MtrunA17_Chr3g0104101 34.965 143 82 6 7 142 11 149 4.38e-16 75.5
Msa0278920 MtrunA17_Chr7g0254181 41.304 92 51 1 207 298 34 122 9.40e-16 74.7
Msa0278920 MtrunA17_Chr4g0013811 48.611 72 37 0 244 315 7 78 2.63e-15 70.9
Msa0278920 MtrunA17_Chr7g0268491 45.545 101 47 3 335 433 3 97 2.80e-15 71.2
Msa0278920 MtrunA17_Chr7g0268491 44.444 99 51 3 44 142 3 97 3.27e-14 68.2
Msa0278920 MtrunA17_Chr5g0432361 42.529 87 49 1 346 432 23 108 4.15e-15 71.2
Msa0278920 MtrunA17_Chr5g0432361 39.535 86 51 1 56 141 24 108 2.04e-11 60.8
Msa0278920 MtrunA17_Chr2g0316771 29.940 167 85 4 5 141 21 185 2.48e-14 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0278920 AT5G06730.1 54.516 310 106 1 163 437 29 338 1.00e-105 318
Msa0278920 AT5G06730.1 53.416 161 74 1 7 167 199 358 8.90e-48 168
Msa0278920 AT5G06720.1 52.769 307 110 1 163 434 28 334 3.68e-103 311
Msa0278920 AT5G06720.1 59.854 137 55 0 7 143 198 334 6.30e-48 168
Msa0278920 AT3G49110.1 51.603 312 114 3 162 436 28 339 2.62e-101 307
Msa0278920 AT3G49110.1 56.338 142 61 1 7 147 200 341 5.93e-43 155
Msa0278920 AT3G32980.1 51.282 312 115 3 162 436 26 337 1.82e-100 305
Msa0278920 AT3G32980.1 53.901 141 64 1 8 147 199 339 3.51e-41 150
Msa0278920 AT3G49120.1 50.962 312 116 3 162 436 27 338 6.45e-100 303
Msa0278920 AT3G49120.1 53.793 145 66 1 8 151 200 344 1.39e-41 151
Msa0278920 AT2G38380.1 47.112 329 131 3 163 455 27 348 2.59e-97 296
Msa0278920 AT2G38380.1 50.327 153 70 1 8 160 199 345 3.51e-45 161
Msa0278920 AT4G08770.1 47.812 320 130 3 160 442 17 336 6.43e-96 293
Msa0278920 AT4G08770.1 49.057 159 75 2 8 165 192 345 1.28e-42 154
Msa0278920 AT4G08780.1 46.250 320 135 3 160 442 17 336 3.70e-93 286
Msa0278920 AT4G08780.1 50.345 145 71 1 8 151 192 336 1.58e-40 148
Msa0278920 AT2G38390.1 45.758 330 136 3 163 456 27 349 1.10e-91 282
Msa0278920 AT2G38390.1 50.327 153 70 1 8 160 199 345 1.77e-43 156
Msa0278920 AT5G19880.1 47.097 310 126 2 162 433 20 329 1.43e-88 273
Msa0278920 AT5G19880.1 50.365 137 67 1 7 142 193 329 3.59e-40 147
Msa0278920 AT5G19890.1 44.884 303 130 4 165 433 28 327 3.86e-80 251
Msa0278920 AT5G19890.1 43.478 138 74 2 7 142 192 327 1.35e-29 118
Msa0278920 AT2G18150.1 44.702 302 131 2 167 433 36 336 3.44e-79 249
Msa0278920 AT2G18150.1 44.853 136 74 1 7 142 202 336 9.83e-28 113
Msa0278920 AT2G18140.1 44.371 302 132 2 167 433 35 335 4.41e-79 249
Msa0278920 AT2G18140.1 46.324 136 72 1 7 142 201 335 1.08e-29 119
Msa0278920 AT3G50990.1 43.137 306 138 2 163 433 37 341 7.02e-76 241
Msa0278920 AT3G50990.1 43.478 138 77 1 5 142 205 341 3.15e-27 112
Msa0278920 AT4G36430.1 43.234 303 136 2 166 433 29 330 7.95e-76 241
Msa0278920 AT4G36430.1 45.588 136 73 1 7 142 196 330 8.88e-28 113
Msa0278920 AT5G66390.1 42.157 306 141 2 163 433 29 333 8.76e-76 241
Msa0278920 AT5G66390.1 45.588 136 73 1 7 142 199 333 1.95e-28 115
Msa0278920 AT1G44970.1 42.715 302 138 1 167 433 45 346 1.82e-72 232
Msa0278920 AT1G44970.1 41.176 136 80 0 7 142 211 346 5.63e-24 102
Msa0278920 AT1G14540.1 42.345 307 135 3 162 433 16 315 2.70e-71 228
Msa0278920 AT1G14540.1 45.588 136 67 3 7 142 187 315 3.16e-26 108
Msa0278920 AT5G05340.1 42.810 306 129 4 165 433 28 324 1.50e-69 224
Msa0278920 AT5G05340.1 42.754 138 68 3 7 142 196 324 1.49e-22 98.6
Msa0278920 AT1G14550.1 41.176 306 137 4 164 433 23 321 1.49e-68 221
Msa0278920 AT1G14550.1 45.588 136 67 2 7 142 193 321 1.13e-26 110
Msa0278920 AT4G16270.1 40.594 303 140 5 167 433 50 348 7.98e-68 220
Msa0278920 AT4G16270.1 40.876 137 76 4 7 142 216 348 3.90e-22 97.8
Msa0278920 AT1G71695.1 41.042 307 136 5 167 436 44 342 4.24e-67 219
Msa0278920 AT1G71695.1 41.176 153 80 4 8 160 213 355 1.06e-24 105
Msa0278920 AT4G37530.1 39.617 313 149 3 159 433 19 329 6.96e-65 212
Msa0278920 AT4G37530.1 44.118 136 74 1 7 142 196 329 2.89e-28 114
Msa0278920 AT1G68850.1 37.821 312 155 4 161 433 24 335 1.29e-64 212
Msa0278920 AT1G68850.1 41.135 141 77 5 7 142 196 335 4.55e-21 94.4
Msa0278920 AT4G30170.1 39.474 304 148 3 164 433 24 325 2.11e-63 208
Msa0278920 AT4G30170.1 43.382 136 75 1 7 142 192 325 5.48e-29 116
Msa0278920 AT5G64120.1 37.798 336 166 6 132 433 2 328 1.68e-62 206
Msa0278920 AT5G64120.1 41.176 136 77 2 7 142 196 328 6.09e-24 102
Msa0278920 AT2G22420.1 38.079 302 147 4 167 433 23 319 2.51e-62 205
Msa0278920 AT2G22420.1 38.971 136 78 3 7 142 189 319 8.79e-22 96.3
Msa0278920 AT2G35380.1 41.060 302 139 4 171 433 34 335 2.55e-62 206
Msa0278920 AT2G35380.1 39.286 140 81 3 7 142 196 335 1.27e-18 87.0
Msa0278920 AT1G49570.1 39.274 303 144 4 165 429 46 346 2.86e-62 206
Msa0278920 AT1G49570.1 43.796 137 72 3 7 140 214 348 5.16e-24 103
Msa0278920 AT2G41480.1 38.538 301 142 5 171 433 33 328 3.39e-62 205
Msa0278920 AT2G41480.1 44.056 143 73 2 5 142 188 328 4.56e-27 111
Msa0278920 AT3G21770.1 38.411 302 149 4 163 429 25 324 5.01e-62 204
Msa0278920 AT3G21770.1 40.299 134 76 3 7 138 193 324 5.10e-23 99.8
Msa0278920 AT5G14130.1 38.835 309 151 3 160 433 25 330 1.31e-61 204
Msa0278920 AT5G14130.1 41.912 136 76 2 7 142 198 330 3.17e-25 106
Msa0278920 AT1G05260.1 37.954 303 153 3 165 433 24 325 1.38e-61 203
Msa0278920 AT1G05260.1 39.130 138 80 3 7 142 190 325 6.90e-23 99.4
Msa0278920 AT5G14130.2 38.835 309 151 3 160 433 66 371 2.05e-61 204
Msa0278920 AT5G14130.2 41.912 136 76 2 7 142 239 371 6.23e-25 106
Msa0278920 AT5G39580.1 41.137 299 132 7 171 433 29 319 6.18e-61 201
Msa0278920 AT5G39580.1 40.441 136 78 2 7 142 187 319 5.60e-24 102
Msa0278920 AT4G11290.1 38.585 311 152 4 160 433 18 326 1.20e-60 201
Msa0278920 AT4G11290.1 41.304 138 77 3 7 142 191 326 1.09e-23 101
Msa0278920 AT5G15180.1 36.393 305 158 4 163 433 27 329 3.29e-60 200
Msa0278920 AT5G15180.1 40.580 138 76 3 7 142 196 329 5.38e-25 105
Msa0278920 AT2G18980.1 38.614 303 150 3 165 433 23 323 3.95e-60 199
Msa0278920 AT2G18980.1 44.118 136 74 1 7 142 190 323 1.06e-27 113
Msa0278920 AT5G17820.1 35.855 304 156 4 161 433 18 313 9.38e-60 198
Msa0278920 AT5G17820.1 37.681 138 80 2 5 142 182 313 2.74e-24 103
Msa0278920 AT5G64110.1 40.803 299 135 7 171 433 38 330 1.29e-59 198
Msa0278920 AT5G64110.1 40.580 138 77 2 8 142 195 330 3.73e-23 100
Msa0278920 AT5G58390.1 41.158 311 132 7 163 433 17 316 1.74e-59 197
Msa0278920 AT5G58390.1 41.045 134 68 3 7 138 188 312 4.50e-21 94.0
Msa0278920 AT3G01190.1 36.721 305 155 5 163 433 21 321 1.88e-59 197
Msa0278920 AT3G01190.1 38.406 138 79 3 7 142 188 321 2.57e-23 100
Msa0278920 AT1G05240.1 37.000 300 148 4 167 429 26 321 4.31e-59 197
Msa0278920 AT1G05240.1 36.879 141 77 3 8 142 191 325 1.31e-19 90.1
Msa0278920 AT1G05250.1 37.000 300 148 4 167 429 26 321 4.31e-59 197
Msa0278920 AT1G05250.1 36.879 141 77 3 8 142 191 325 1.31e-19 90.1
Msa0278920 AT5G17820.2 35.855 304 156 4 161 433 71 366 1.41e-58 197
Msa0278920 AT5G17820.2 37.681 138 80 2 5 142 235 366 1.64e-23 102
Msa0278920 AT4G37520.1 37.785 307 151 3 165 433 25 329 1.56e-58 196
Msa0278920 AT4G37520.1 41.912 136 77 1 7 142 196 329 8.83e-26 107
Msa0278920 AT5G51890.1 36.275 306 155 5 163 433 22 322 1.73e-58 195
Msa0278920 AT5G51890.1 38.129 139 75 4 8 142 191 322 1.41e-17 84.0
Msa0278920 AT5G42180.1 36.364 308 154 6 160 432 16 316 2.09e-58 195
Msa0278920 AT5G42180.1 35.000 140 74 5 8 141 188 316 3.83e-13 70.5
Msa0278920 AT4G37520.2 37.785 307 148 4 165 433 25 326 6.35e-58 194
Msa0278920 AT4G37520.2 41.912 136 77 1 7 142 193 326 8.07e-26 107
Msa0278920 AT4G25980.1 36.570 309 156 4 162 433 21 326 7.52e-58 194
Msa0278920 AT4G25980.1 34.752 141 85 2 7 142 188 326 9.25e-16 78.6
Msa0278920 AT3G03670.1 36.156 307 160 2 161 433 17 321 1.68e-57 192
Msa0278920 AT3G03670.1 39.130 138 82 1 5 142 186 321 1.10e-23 101
Msa0278920 AT5G58400.1 39.159 309 141 5 163 433 26 325 2.46e-56 190
Msa0278920 AT5G58400.1 37.778 135 73 3 7 139 197 322 3.85e-18 85.5
Msa0278920 AT2G24800.1 37.500 304 152 5 165 433 29 329 2.80e-55 187
Msa0278920 AT2G24800.1 40.000 140 77 4 7 142 193 329 4.56e-20 91.3
Msa0278920 AT2G35380.2 46.667 225 116 3 213 433 23 247 2.65e-54 182
Msa0278920 AT2G35380.2 39.286 140 81 3 7 142 108 247 2.94e-19 87.4
Msa0278920 AT3G49960.1 35.831 307 157 3 165 433 25 329 4.50e-54 184
Msa0278920 AT3G49960.1 37.500 136 83 1 7 142 196 329 1.38e-21 95.9
Msa0278920 AT4G31760.1 35.738 305 159 4 163 433 25 326 1.34e-53 182
Msa0278920 AT4G31760.1 34.532 139 85 3 7 142 191 326 4.09e-16 79.7
Msa0278920 AT5G67400.1 35.599 309 159 3 163 433 23 329 3.66e-53 181
Msa0278920 AT5G67400.1 38.971 136 81 1 7 142 196 329 1.47e-22 98.6
Msa0278920 AT1G77100.1 37.261 314 152 6 157 433 14 319 6.66e-53 181
Msa0278920 AT1G77100.1 35.252 139 80 3 7 142 188 319 4.28e-15 76.6
Msa0278920 AT3G28200.1 33.442 308 160 4 163 433 17 316 1.33e-51 177
Msa0278920 AT3G28200.1 37.226 137 77 4 7 142 188 316 4.10e-16 79.3
Msa0278920 AT5G40150.1 33.442 308 161 4 163 433 28 328 6.66e-51 176
Msa0278920 AT5G40150.1 35.036 137 81 3 7 142 199 328 3.01e-14 73.9
Msa0278920 AT4G37530.2 38.314 261 123 2 159 381 19 279 8.86e-51 174
Msa0278920 AT4G37530.2 47.561 82 43 0 7 88 196 277 8.30e-18 84.0
Msa0278920 AT5G64100.1 35.354 297 152 6 171 433 41 331 6.94e-50 173
Msa0278920 AT5G64100.1 35.000 140 82 4 7 142 197 331 6.89e-17 82.0
Msa0278920 AT2G39040.1 35.484 310 154 7 166 433 45 350 2.79e-49 172
Msa0278920 AT2G39040.1 45.390 141 69 4 7 142 213 350 2.13e-23 101
Msa0278920 AT4G33420.1 33.657 309 159 5 159 433 29 325 9.67e-49 170
Msa0278920 AT4G33420.1 36.765 136 75 3 7 142 201 325 2.03e-15 77.4
Msa0278920 AT4G17690.1 33.224 304 159 4 167 433 26 322 1.88e-48 169
Msa0278920 AT4G17690.1 35.294 136 80 3 8 142 194 322 2.22e-18 86.3
Msa0278920 AT4G33420.2 33.657 309 159 5 159 433 76 372 4.33e-48 169
Msa0278920 AT4G33420.2 36.765 136 75 3 7 142 248 372 2.86e-15 77.8
Msa0278920 AT2G34060.1 32.308 325 178 4 147 431 22 344 1.18e-47 167
Msa0278920 AT2G34060.1 38.519 135 79 3 7 139 211 343 7.76e-20 90.9
Msa0278920 AT5G24070.1 32.727 330 172 8 147 435 17 337 4.44e-47 166
Msa0278920 AT5G24070.1 39.456 147 82 3 5 146 195 339 1.11e-24 104
Msa0278920 AT4G26010.1 34.516 310 150 7 161 433 16 309 7.20e-46 162
Msa0278920 AT4G26010.1 36.957 138 69 5 8 142 187 309 1.92e-15 77.4
Msa0278920 AT4G26010.2 34.405 311 151 7 160 433 43 337 8.15e-46 162
Msa0278920 AT4G26010.2 36.957 138 69 5 8 142 215 337 1.99e-15 77.8
Msa0278920 AT2G43480.1 33.223 301 154 7 172 433 43 335 1.71e-45 161
Msa0278920 AT2G43480.1 37.762 143 82 3 5 142 195 335 7.87e-21 93.6
Msa0278920 AT1G30870.1 33.444 302 157 7 171 436 55 348 3.20e-45 161
Msa0278920 AT1G30870.1 36.620 142 82 4 7 145 212 348 8.34e-19 87.8
Msa0278920 AT5G22410.1 32.026 306 167 7 166 435 27 327 4.16e-45 160
Msa0278920 AT5G22410.1 30.496 141 92 4 1 138 184 321 6.51e-17 82.0
Msa0278920 AT5G47000.1 31.699 306 166 4 165 433 31 330 8.10e-45 159
Msa0278920 AT5G47000.1 33.577 137 84 3 7 142 200 330 2.40e-16 80.5
Msa0278920 AT4G33870.1 29.429 333 156 6 171 430 72 398 1.79e-44 160
Msa0278920 AT1G24110.1 31.046 306 171 4 165 433 20 322 2.89e-43 155
Msa0278920 AT1G24110.1 34.752 141 88 3 7 146 189 326 9.59e-19 87.4
Msa0278920 AT1G34510.1 33.981 309 155 7 160 433 15 309 1.09e-40 148
Msa0278920 AT1G34510.1 32.593 135 79 3 8 142 187 309 2.81e-12 67.8
Msa0278920 AT3G17070.1 30.503 318 172 6 158 433 29 339 9.60e-39 143
Msa0278920 AT3G17070.1 35.664 143 77 5 7 142 205 339 1.10e-11 66.2
Msa0278920 AT4G21960.1 30.795 302 165 4 171 435 35 329 1.02e-37 140
Msa0278920 AT4G21960.1 34.965 143 83 3 5 144 194 329 1.83e-16 80.9
Msa0278920 AT2G37130.1 29.870 308 171 5 164 433 27 327 3.29e-32 125
Msa0278920 AT2G37130.1 34.752 141 82 3 5 142 194 327 6.53e-15 75.9
Msa0278920 AT2G37130.2 29.900 301 166 5 171 433 3 296 4.27e-31 121
Msa0278920 AT2G37130.2 34.752 141 82 3 5 142 163 296 5.06e-15 75.9
Msa0278920 AT3G17070.2 32.895 228 139 5 213 433 56 276 9.74e-31 120
Msa0278920 AT3G17070.2 35.664 143 77 5 7 142 142 276 7.10e-12 66.2
Msa0278920 AT4G25980.2 37.278 169 73 2 163 299 67 234 2.87e-28 113
Msa0278920 AT5G39580.2 36.649 191 76 4 171 320 29 215 1.60e-26 107
Msa0278920 AT2G24800.2 34.146 164 77 1 165 297 29 192 1.78e-22 96.3

Find 102 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACAATGTAACTTTGTTAA+TGG 0.179025 2_3:+12096000 Msa0278920:CDS
TGTTCTCAATGTTTGTAAAT+AGG 0.208646 2_3:-12095707 None:intergenic
TCCATCTTCTGATGATTCTT+TGG 0.230163 2_3:-12099514 None:intergenic
AACTTTGTTAATGGAAATTC+TGG 0.240702 2_3:+12096009 Msa0278920:CDS
AAAGAAGAGAGTTTGATTAT+TGG 0.249991 2_3:-12099367 None:intergenic
GCTGTGAATGGGAATTCTTC+TGG 0.287218 2_3:+12099474 Msa0278920:CDS
GAGAGTTGGATCGGGATTTC+CGG 0.288006 2_3:-12095677 None:intergenic
TGCTTGCAATGTTTGTAAAT+AGG 0.314540 2_3:-12099169 None:intergenic
AGTAAAATTAAAGTGTTAAC+TGG 0.326483 2_3:+12095958 Msa0278920:CDS
AATCCTTAGGTTTGAATAGT+AGG 0.329533 2_3:-12095803 None:intergenic
GATGAGACTACCAAGCATTC+TGG 0.329991 2_3:-12097208 None:intergenic
GCCCTTTCCAACTTGGAGAT+TGG 0.339568 2_3:-12099274 None:intergenic
TCAAACCTAAGGATTCAAAA+AGG 0.355435 2_3:+12095811 Msa0278920:CDS
AAGCTTCAAAGAAAAGAGTT+TGG 0.356755 2_3:-12095912 None:intergenic
AAACTATCCCTTCTTCCTAA+TGG 0.383956 2_3:-12098788 None:intergenic
TTATGTTCTTCAAGTTGATC+AGG 0.385297 2_3:+12099638 Msa0278920:three_prime_UTR
CCTACTTGGCAAGTTCCATT+AGG 0.387141 2_3:+12098773 Msa0278920:CDS
TAGGCCGAGTCGAATGTATC+TGG 0.391018 2_3:-12095784 None:intergenic
CGACTCTCTGGTGACTTTAG+TGG 0.401206 2_3:-12096037 None:intergenic
GAAACAAGCCCTTTCCAACT+TGG 0.404164 2_3:-12099281 None:intergenic
TGGTAGCACCCTCACCGATT+TGG 0.404627 2_3:+12095750 Msa0278920:CDS
ATCTAGCTGTGCATTTGAAA+AGG 0.413208 2_3:-12097106 None:intergenic
ATTGACCTCTTCCAATTGTA+TGG 0.421998 2_3:-12099077 None:intergenic
TGGTACAAACCTAACCGATT+TGG 0.423311 2_3:+12099212 Msa0278920:CDS
TTGGAGATTGGAGTAGTAGT+TGG 0.432843 2_3:-12099262 None:intergenic
ATGAGACTACCAAGCATTCT+GGG 0.442784 2_3:-12097207 None:intergenic
TCAAATGTATCTGGTGTGGT+TGG 0.445470 2_3:-12099237 None:intergenic
AATAGTGTCAGAACCATTTG+TGG 0.449041 2_3:-12099325 None:intergenic
GGTCGTGTTAAGAGTTGAAT+CGG 0.451680 2_3:-12099148 None:intergenic
CACTTGTGGAAGACAATACT+TGG 0.453813 2_3:-12095849 None:intergenic
GGCAAGTTCCATTAGGAAGA+AGG 0.454337 2_3:+12098780 Msa0278920:CDS
ACCATCCTCTGACGACTCTC+TGG 0.456258 2_3:-12096049 None:intergenic
GAATGCTTGGTAGTCTCATC+AGG 0.457687 2_3:+12097211 Msa0278920:CDS
TAGTTGGAGTCAAATGTATC+TGG 0.458242 2_3:-12099246 None:intergenic
TGGTTGGGTCCAAATCGGTT+AGG 0.471942 2_3:-12099221 None:intergenic
TGCAGGCAAATGGTCCTACT+TGG 0.473885 2_3:+12098759 Msa0278920:intron
TCAGCACAAGAAACTGTGTT+AGG 0.474603 2_3:-12097626 None:intergenic
TAGTCGAGTAAGGTTGAAAG+TGG 0.481738 2_3:-12098852 None:intergenic
GTCGTGTTAAGAGTTGAATC+GGG 0.481859 2_3:-12099147 None:intergenic
TGCTGAAATATCATCTGATC+TGG 0.487672 2_3:+12097664 Msa0278920:CDS
CAAATGTATCTGGTGTGGTT+GGG 0.492575 2_3:-12099236 None:intergenic
AAATAGGTTGTGTTGAGAGT+TGG 0.493758 2_3:-12095691 None:intergenic
CAATCTGATCCCAGAATGCT+TGG 0.494211 2_3:+12097198 Msa0278920:CDS
TCCAATCTCCAAGTTGGAAA+GGG 0.496337 2_3:+12099273 Msa0278920:CDS
GAATGGGAATTCTTCTGGAT+TGG 0.497352 2_3:+12099479 Msa0278920:CDS
TTTGTACCAGGTCCACCATT+GGG 0.500186 2_3:-12099198 None:intergenic
CATGTACTATTGTAAAATGA+AGG 0.505744 2_3:-12097129 None:intergenic
CTCCAATCTCCAAGTTGGAA+AGG 0.508356 2_3:+12099272 Msa0278920:CDS
GGTTGTGTTGAGAGTTGGAT+CGG 0.512414 2_3:-12095686 None:intergenic
ACCAAAGAATCATCAGAAGA+TGG 0.514184 2_3:+12099513 Msa0278920:CDS
AATCGTGTCCGCGCCACTTG+TGG 0.515958 2_3:-12095863 None:intergenic
GTTGTGTTGAGAGTTGGATC+GGG 0.519867 2_3:-12095685 None:intergenic
TGGAGTGGTTGGATCCAAAT+CGG 0.521632 2_3:-12095764 None:intergenic
GTGCTACCAGGTCCACCATT+GGG 0.521697 2_3:-12095736 None:intergenic
CCTAATGGAACTTGCCAAGT+AGG 0.522118 2_3:-12098773 None:intergenic
GCTCATTCTAAATATAAGCT+TGG 0.522249 2_3:+12099544 Msa0278920:exon
ACACAGTGTAATGCTGTGAA+TGG 0.525414 2_3:+12099462 Msa0278920:CDS
TGGTGTGGTTGGGTCCAAAT+CGG 0.525424 2_3:-12099226 None:intergenic
TACTACTCCAATCTCCAAGT+TGG 0.528086 2_3:+12099267 Msa0278920:CDS
TCTAGCTGTGCATTTGAAAA+GGG 0.528974 2_3:-12097105 None:intergenic
TTATACAATTTCAGCAACAC+TGG 0.533969 2_3:+12099120 Msa0278920:CDS
CGGCCTACTATTCAAACCTA+AGG 0.534403 2_3:+12095800 Msa0278920:CDS
GCAAGTTCCATTAGGAAGAA+GGG 0.535318 2_3:+12098781 Msa0278920:CDS
ACTGATCTAGTTGCACTCTC+AGG 0.536287 2_3:+12098908 Msa0278920:CDS
GTTTGTACCAGGTCCACCAT+TGG 0.536968 2_3:-12099199 None:intergenic
ATATGTCCCAATGGTGGACC+TGG 0.538663 2_3:+12095730 Msa0278920:CDS
ATATGTCCCAATGGTGGACC+TGG 0.538663 2_3:+12099192 Msa0278920:CDS
TCGAATGTATCTGGAGTGGT+TGG 0.542044 2_3:-12095775 None:intergenic
CACTCCAGATACATTCGACT+CGG 0.554414 2_3:+12095780 Msa0278920:CDS
GGTGCTCATACAATTGGTAG+AGG 0.557485 2_3:+12095610 Msa0278920:intron
GGTGCTACCAGGTCCACCAT+TGG 0.558869 2_3:-12095737 None:intergenic
TATGTTCTTCAAGTTGATCA+GGG 0.559562 2_3:+12099639 Msa0278920:three_prime_UTR
AGAATCATCAGAAGATGGAA+TGG 0.561224 2_3:+12099518 Msa0278920:CDS
GGTGGCCATACAATTGGAAG+AGG 0.561371 2_3:+12099072 Msa0278920:intron
CACAGTGTAATGCTGTGAAT+GGG 0.565755 2_3:+12099463 Msa0278920:CDS
ACCAGAGAGTCGTCAGAGGA+TGG 0.568887 2_3:+12096048 Msa0278920:CDS
AAATCGGTGAGGGTGCTACC+AGG 0.569044 2_3:-12095748 None:intergenic
AGTCGAGTAAGGTTGAAAGT+GGG 0.569417 2_3:-12098851 None:intergenic
AAAGTGTTAACTGGATCTCA+AGG 0.570509 2_3:+12095967 Msa0278920:CDS
CAAGTATTGTCTTCCACAAG+TGG 0.571698 2_3:+12095850 Msa0278920:CDS
AAGCTTGGAAAATATTGAAG+AGG 0.575288 2_3:+12099559 Msa0278920:three_prime_UTR
GGTTGGATCCAAATCGGTGA+GGG 0.590415 2_3:-12095758 None:intergenic
AAATCGGTTAGGTTTGTACC+AGG 0.592503 2_3:-12099210 None:intergenic
GTCGAGTAAGGTTGAAAGTG+GGG 0.594816 2_3:-12098850 None:intergenic
TTATACAATTTCAGCAACAC+CGG 0.601743 2_3:+12095658 Msa0278920:CDS
TTGAGAACAATATGTCCCAA+TGG 0.615307 2_3:+12095721 Msa0278920:CDS
GTTGTTGAAACTATTGACAA+TGG 0.615780 2_3:-12095887 None:intergenic
CAAGCAATATGTCCCAATGG+TGG 0.620363 2_3:+12099186 Msa0278920:CDS
TTGCAAGCAATATGTCCCAA+TGG 0.633670 2_3:+12099183 Msa0278920:CDS
AGAACAATATGTCCCAATGG+TGG 0.636134 2_3:+12095724 Msa0278920:CDS
AAACCAGATCAAAACAGCGG+TGG 0.640248 2_3:+12097592 Msa0278920:intron
ACATATATGGTATGTGCATG+TGG 0.641433 2_3:+12099600 Msa0278920:three_prime_UTR
TCGAGTAAGGTTGAAAGTGG+GGG 0.643752 2_3:-12098849 None:intergenic
AGTCACCAGAGAGTCGTCAG+AGG 0.647099 2_3:+12096044 Msa0278920:CDS
ATTGTCTTCCACAAGTGGCG+CGG 0.651259 2_3:+12095855 Msa0278920:CDS
TCGTGTTAAGAGTTGAATCG+GGG 0.656526 2_3:-12099146 None:intergenic
CGAGTCGAATGTATCTGGAG+TGG 0.659011 2_3:-12095779 None:intergenic
AATCTTGATTCAATCGTACG+TGG 0.676766 2_3:+12097156 Msa0278920:CDS
GGAGTCAAATGTATCTGGTG+TGG 0.686590 2_3:-12099241 None:intergenic
TGGTTGGATCCAAATCGGTG+AGG 0.692177 2_3:-12095759 None:intergenic
CAACTAGATCAGTAGTACTG+AGG 0.692185 2_3:-12098898 None:intergenic
GATAAACCAGATCAAAACAG+CGG 0.762418 2_3:+12097589 Msa0278920:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATATACTTTAATATTAATA+GGG - chr2_3:12096587-12096606 None:intergenic 10.0%
!! TCATATACTTTAATATTAAT+AGG - chr2_3:12096588-12096607 None:intergenic 10.0%
!!! CTTTTCAAATTTAAATTTTA+AGG + chr2_3:12097323-12097342 Msa0278920:intron 10.0%
!! GATAAACAAAATATATATTA+TGG - chr2_3:12098721-12098740 None:intergenic 10.0%
!! AGAAGAAAAAAAAATTAAAT+GGG - chr2_3:12099013-12099032 None:intergenic 10.0%
!! TAGAAGAAAAAAAAATTAAA+TGG - chr2_3:12099014-12099033 None:intergenic 10.0%
!!! ATATGTTTTGGTAAATTTTT+AGG + chr2_3:12095589-12095608 Msa0278920:intron 15.0%
!! TTATGTGTCTTAAATTATTA+TGG + chr2_3:12096243-12096262 Msa0278920:intron 15.0%
!! AAATGAAATGTAAATTTGAA+GGG - chr2_3:12096335-12096354 None:intergenic 15.0%
!!! NNNNTGACATAAATGTATTT+TGG - chr2_3:12096387-12096406 None:intergenic 15.0%
!! AATAGGGTAAAATAATATAT+GGG - chr2_3:12096571-12096590 None:intergenic 15.0%
!! TAATAGGGTAAAATAATATA+TGG - chr2_3:12096572-12096591 None:intergenic 15.0%
!! TAGTAAATATTATTAAAGCA+TGG + chr2_3:12096844-12096863 Msa0278920:intron 15.0%
!! AGTAAATATTATTAAAGCAT+GGG + chr2_3:12096845-12096864 Msa0278920:intron 15.0%
!! TGAAAAGAAAAATAAATAGT+TGG - chr2_3:12097310-12097329 None:intergenic 15.0%
!!! TCAAATTTAAATTTTAAGGA+CGG + chr2_3:12097327-12097346 Msa0278920:intron 15.0%
!! TTTAAACTAGTCAAAATTAT+AGG - chr2_3:12098626-12098645 None:intergenic 15.0%
!! AAGAAAAAAAAATTAAATGG+GGG - chr2_3:12099011-12099030 None:intergenic 15.0%
!! GAAGAAAAAAAAATTAAATG+GGG - chr2_3:12099012-12099031 None:intergenic 15.0%
!!! TTTACTTTTATGTTGATTTA+TGG - chr2_3:12099821-12099840 None:intergenic 15.0%
!!! TTTACTCATTTTAATCATTG+AGG - chr2_3:12095944-12095963 None:intergenic 20.0%
!!! AGTAAAATTAAAGTGTTAAC+TGG + chr2_3:12095958-12095977 Msa0278920:CDS 20.0%
!! AAACAATGTAACTTTGTTAA+TGG + chr2_3:12096000-12096019 Msa0278920:CDS 20.0%
!! ACACATAATTATCATAATAG+AGG - chr2_3:12096231-12096250 None:intergenic 20.0%
!! TGTCTTAAATTATTATGGTA+AGG + chr2_3:12096248-12096267 Msa0278920:intron 20.0%
!! TAAATTATTATGGTAAGGAT+AGG + chr2_3:12096253-12096272 Msa0278920:intron 20.0%
!! GAAATGAAATGTAAATTTGA+AGG - chr2_3:12096336-12096355 None:intergenic 20.0%
!! AATTGTATTTGATCATACTT+CGG - chr2_3:12096673-12096692 None:intergenic 20.0%
!! GAACCATAATAAAAATAGAA+AGG + chr2_3:12096923-12096942 Msa0278920:intron 20.0%
!!! TGTCCTTTCTATTTTTATTA+TGG - chr2_3:12096929-12096948 None:intergenic 20.0%
!! AAAAAAAAAATGAATCCACT+TGG + chr2_3:12097030-12097049 Msa0278920:intron 20.0%
!! AAAGATAAACAAATAAACGT+AGG + chr2_3:12097871-12097890 Msa0278920:intron 20.0%
!! TCATTTCTCAATTATATAAC+CGG + chr2_3:12097996-12098015 Msa0278920:intron 20.0%
!!! TTTTTAACAATCTCAAAAGT+AGG - chr2_3:12098207-12098226 None:intergenic 20.0%
!!! ACTTTTTCCATTCATTTTTT+AGG + chr2_3:12099051-12099070 Msa0278920:intron 20.0%
!! ATGATAAAAATGGGTAATAT+TGG + chr2_3:12099408-12099427 Msa0278920:CDS 20.0%
!!! TAATTTTGTGCATACATATA+TGG + chr2_3:12099587-12099606 Msa0278920:three_prime_UTR 20.0%
!! CTTTGACACAAATATTATTA+GGG - chr2_3:12099677-12099696 None:intergenic 20.0%
!! ACTTTGACACAAATATTATT+AGG - chr2_3:12099678-12099697 None:intergenic 20.0%
!! GCATCTAATTGTATATGTTT+TGG + chr2_3:12095577-12095596 Msa0278920:intron 25.0%
! TGTTCTCAATGTTTGTAAAT+AGG - chr2_3:12095710-12095729 None:intergenic 25.0%
!!! TCTTTTCTTTGAAGCTTTTA+AGG + chr2_3:12095918-12095937 Msa0278920:CDS 25.0%
! AACTTTGTTAATGGAAATTC+TGG + chr2_3:12096009-12096028 Msa0278920:CDS 25.0%
!!! GATAGGATATAGAAGTATTT+AGG + chr2_3:12096270-12096289 Msa0278920:intron 25.0%
! CTTCCATATTGCTTTAATAA+AGG + chr2_3:12096821-12096840 Msa0278920:intron 25.0%
! CTACCTTTATTAAAGCAATA+TGG - chr2_3:12096827-12096846 None:intergenic 25.0%
!!! ATGATGCTTTTATCTAGTTT+GGG - chr2_3:12096969-12096988 None:intergenic 25.0%
! CATGTACTATTGTAAAATGA+AGG - chr2_3:12097132-12097151 None:intergenic 25.0%
! GTTCATTTAAATGTATGACT+AGG - chr2_3:12097707-12097726 None:intergenic 25.0%
! TTCCAAAAAAACGTAGATAT+TGG + chr2_3:12097753-12097772 Msa0278920:intron 25.0%
!!! TACCAATATCTACGTTTTTT+TGG - chr2_3:12097758-12097777 None:intergenic 25.0%
! AAAAAAACGTAGATATTGGT+AGG + chr2_3:12097757-12097776 Msa0278920:intron 25.0%
!!! TGGTTATGTATATTTTGGTT+TGG + chr2_3:12098114-12098133 Msa0278920:intron 25.0%
! AGATTGTTAAAAAACTCATC+CGG + chr2_3:12098214-12098233 Msa0278920:intron 25.0%
! TAATTAACTATTGTGGAACA+AGG - chr2_3:12098261-12098280 None:intergenic 25.0%
! ACTTCGATAATTAACTATTG+TGG - chr2_3:12098268-12098287 None:intergenic 25.0%
! ACAATAGTTAATTATCGAAG+TGG + chr2_3:12098267-12098286 Msa0278920:intron 25.0%
! CATCATAAAACAACATGAAA+AGG - chr2_3:12098414-12098433 None:intergenic 25.0%
! TTAATACATTGTTCGAACTT+TGG + chr2_3:12098476-12098495 Msa0278920:intron 25.0%
!!! TTTTCCATTCATTTTTTAGG+TGG + chr2_3:12099054-12099073 Msa0278920:intron 25.0%
! AAAGAAGAGAGTTTGATTAT+TGG - chr2_3:12099370-12099389 None:intergenic 25.0%
!!! ATTACCCATTTTTATCATTG+AGG - chr2_3:12099406-12099425 None:intergenic 25.0%
!!! TTTTTAGGTGCTCATACAAT+TGG + chr2_3:12095604-12095623 Msa0278920:intron 30.0%
TTATACAATTTCAGCAACAC+CGG + chr2_3:12095658-12095677 Msa0278920:CDS 30.0%
AATCCTTAGGTTTGAATAGT+AGG - chr2_3:12095806-12095825 None:intergenic 30.0%
TCAAACCTAAGGATTCAAAA+AGG + chr2_3:12095811-12095830 Msa0278920:CDS 30.0%
GTTGTTGAAACTATTGACAA+TGG - chr2_3:12095890-12095909 None:intergenic 30.0%
AAGCTTCAAAGAAAAGAGTT+TGG - chr2_3:12095915-12095934 None:intergenic 30.0%
GGTTTGTACTTTGTAAACTA+TGG + chr2_3:12096174-12096193 Msa0278920:intron 30.0%
TCTTACAAACACTACATCAA+TGG - chr2_3:12096200-12096219 None:intergenic 30.0%
CATTTCTGATTTACTAACCT+CGG + chr2_3:12096350-12096369 Msa0278920:intron 30.0%
!! TTTTGGTTAAAATTTGACCG+AGG - chr2_3:12096370-12096389 None:intergenic 30.0%
!! TCATGTTAACTTGTGTTCTT+AGG - chr2_3:12096548-12096567 None:intergenic 30.0%
AAAGGAGTAGTTGCTTAAAA+AGG - chr2_3:12096770-12096789 None:intergenic 30.0%
! GGAATCTTATTTAAAGAACG+TGG - chr2_3:12096880-12096899 None:intergenic 30.0%
TTATTATGGTTCGTACATGT+TGG - chr2_3:12096915-12096934 None:intergenic 30.0%
AAATAGAAAGGACATTGCAT+TGG + chr2_3:12096935-12096954 Msa0278920:intron 30.0%
! CATGATGCTTTTATCTAGTT+TGG - chr2_3:12096970-12096989 None:intergenic 30.0%
TATCAAACATTGTCTCAAAG+AGG + chr2_3:12097003-12097022 Msa0278920:intron 30.0%
AAACAGTCATGAAAATGTGA+AGG - chr2_3:12097287-12097306 None:intergenic 30.0%
! AAATCACATACATGGTAATG+AGG - chr2_3:12097392-12097411 None:intergenic 30.0%
ATTTGACGAAATCACATACA+TGG - chr2_3:12097400-12097419 None:intergenic 30.0%
!! CTTATAGAGTTGTTATTTGG+TGG - chr2_3:12097557-12097576 None:intergenic 30.0%
! CCTCTTATAGAGTTGTTATT+TGG - chr2_3:12097560-12097579 None:intergenic 30.0%
CCAAATAACAACTCTATAAG+AGG + chr2_3:12097557-12097576 Msa0278920:intron 30.0%
TAACAACTCTATAAGAGGTT+TGG + chr2_3:12097562-12097581 Msa0278920:intron 30.0%
AAATGTATGACTAGGAAACT+AGG - chr2_3:12097699-12097718 None:intergenic 30.0%
TCATAAGTTGTCCAAAACAT+GGG - chr2_3:12097844-12097863 None:intergenic 30.0%
! GTAGACTTTTATATTGTGTC+TGG + chr2_3:12098094-12098113 Msa0278920:intron 30.0%
! GTGTCTGGTTATGTATATTT+TGG + chr2_3:12098109-12098128 Msa0278920:intron 30.0%
AAGTAGGAAATCTCAAAAGT+GGG - chr2_3:12098191-12098210 None:intergenic 30.0%
AAAGTAGGAAATCTCAAAAG+TGG - chr2_3:12098192-12098211 None:intergenic 30.0%
! GGGAGTAAAGATGTAATTTT+TGG + chr2_3:12098320-12098339 Msa0278920:intron 30.0%
! TTTTATAGCGAAAGATGAAG+TGG + chr2_3:12098345-12098364 Msa0278920:intron 30.0%
TTTATAGCGAAAGATGAAGT+GGG + chr2_3:12098346-12098365 Msa0278920:intron 30.0%
GCTCAAACAAATCATTATCA+AGG + chr2_3:12098648-12098667 Msa0278920:intron 30.0%
! TGCAATTTTTGTTGCATTGT+AGG - chr2_3:12098743-12098762 None:intergenic 30.0%
TACAATGCAACAAAAATTGC+AGG + chr2_3:12098742-12098761 Msa0278920:intron 30.0%
!! AGTTAGATTTTAGTCGAGTA+AGG - chr2_3:12098865-12098884 None:intergenic 30.0%
TTATACAATTTCAGCAACAC+TGG + chr2_3:12095658-12095677 Msa0278920:CDS 30.0%
TGCTTGCAATGTTTGTAAAT+AGG - chr2_3:12099172-12099191 None:intergenic 30.0%
TGTTGCCTCAATGATAAAAA+TGG + chr2_3:12099398-12099417 Msa0278920:CDS 30.0%
GTTGCCTCAATGATAAAAAT+GGG + chr2_3:12099399-12099418 Msa0278920:CDS 30.0%
!! GGTAATATTGGAGTTTTAAC+TGG + chr2_3:12099420-12099439 Msa0278920:CDS 30.0%
GCTCATTCTAAATATAAGCT+TGG + chr2_3:12099544-12099563 Msa0278920:exon 30.0%
AAGCTTGGAAAATATTGAAG+AGG + chr2_3:12099559-12099578 Msa0278920:three_prime_UTR 30.0%
!! TTATGTTCTTCAAGTTGATC+AGG + chr2_3:12099638-12099657 Msa0278920:three_prime_UTR 30.0%
!! TATGTTCTTCAAGTTGATCA+GGG + chr2_3:12099639-12099658 Msa0278920:three_prime_UTR 30.0%
ATTTGAACTCCGTTCGTTAA+GGG + chr2_3:12095524-12095543 Msa0278920:intron 35.0%
ACACATATACGTACATCATG+AGG - chr2_3:12095557-12095576 None:intergenic 35.0%
AAATAGGTTGTGTTGAGAGT+TGG - chr2_3:12095694-12095713 None:intergenic 35.0%
TTGAGAACAATATGTCCCAA+TGG + chr2_3:12095721-12095740 Msa0278920:CDS 35.0%
! ACAAGCCTTTTTGAATCCTT+AGG - chr2_3:12095819-12095838 None:intergenic 35.0%
! AAAGTGTTAACTGGATCTCA+AGG + chr2_3:12095967-12095986 Msa0278920:CDS 35.0%
ACATACATGTTGTGCTCTTA+TGG + chr2_3:12096139-12096158 Msa0278920:intron 35.0%
! AATCAAAGTGCAAAAGCACA+TGG + chr2_3:12096634-12096653 Msa0278920:intron 35.0%
! CAACTACTCCTTTTCCTTTT+TGG + chr2_3:12096777-12096796 Msa0278920:intron 35.0%
! GTCTAGAACCAAAAAGGAAA+AGG - chr2_3:12096788-12096807 None:intergenic 35.0%
! ACTAGAGTCTAGAACCAAAA+AGG - chr2_3:12096794-12096813 None:intergenic 35.0%
TCTAGCTGTGCATTTGAAAA+GGG - chr2_3:12097108-12097127 None:intergenic 35.0%
ATCTAGCTGTGCATTTGAAA+AGG - chr2_3:12097109-12097128 None:intergenic 35.0%
AATCTTGATTCAATCGTACG+TGG + chr2_3:12097156-12097175 Msa0278920:CDS 35.0%
GAAAATGTGAAGGTAAGAGA+TGG - chr2_3:12097277-12097296 None:intergenic 35.0%
! CTCAATTTTGCTGAACGATA+CGG + chr2_3:12097505-12097524 Msa0278920:intron 35.0%
GATAAACCAGATCAAAACAG+CGG + chr2_3:12097589-12097608 Msa0278920:intron 35.0%
TGCTGAAATATCATCTGATC+TGG + chr2_3:12097664-12097683 Msa0278920:CDS 35.0%
CTCATAAGTTGTCCAAAACA+TGG - chr2_3:12097845-12097864 None:intergenic 35.0%
AAGGCAAGGCTATCAAATTA+TGG + chr2_3:12098054-12098073 Msa0278920:intron 35.0%
AAGGCTATCAAATTATGGTG+TGG + chr2_3:12098059-12098078 Msa0278920:intron 35.0%
!! TTTGGTTTGGACTGATATGA+TGG + chr2_3:12098127-12098146 Msa0278920:intron 35.0%
TTGTTAAAAAACTCATCCGG+CGG + chr2_3:12098217-12098236 Msa0278920:intron 35.0%
AACAAACAGTTAACTGTCGA+TGG + chr2_3:12098299-12098318 Msa0278920:intron 35.0%
ACAAACAGTTAACTGTCGAT+GGG + chr2_3:12098300-12098319 Msa0278920:intron 35.0%
ATTTCACACACACAAAGTAG+AGG - chr2_3:12098504-12098523 None:intergenic 35.0%
CAACAAAAATTGCAGGCAAA+TGG + chr2_3:12098749-12098768 Msa0278920:intron 35.0%
AAACTATCCCTTCTTCCTAA+TGG - chr2_3:12098791-12098810 None:intergenic 35.0%
ATGGCCACCTAAAAAATGAA+TGG - chr2_3:12099061-12099080 None:intergenic 35.0%
!!! TTTTTAGGTGGCCATACAAT+TGG + chr2_3:12099066-12099085 Msa0278920:intron 35.0%
ATTGACCTCTTCCAATTGTA+TGG - chr2_3:12099080-12099099 None:intergenic 35.0%
TAGTTGGAGTCAAATGTATC+TGG - chr2_3:12099249-12099268 None:intergenic 35.0%
CATTTGTGGAAAAAAGCTCT+TGG - chr2_3:12099314-12099333 None:intergenic 35.0%
!!! CAAGAGCTTTTTTCCACAAA+TGG + chr2_3:12099312-12099331 Msa0278920:CDS 35.0%
AATAGTGTCAGAACCATTTG+TGG - chr2_3:12099328-12099347 None:intergenic 35.0%
ACCAAAGAATCATCAGAAGA+TGG + chr2_3:12099513-12099532 Msa0278920:CDS 35.0%
TCCATCTTCTGATGATTCTT+TGG - chr2_3:12099517-12099536 None:intergenic 35.0%
AGAATCATCAGAAGATGGAA+TGG + chr2_3:12099518-12099537 Msa0278920:CDS 35.0%
ACATATATGGTATGTGCATG+TGG + chr2_3:12099600-12099619 Msa0278920:three_prime_UTR 35.0%
GATTTGAACTCCGTTCGTTA+AGG + chr2_3:12095523-12095542 Msa0278920:intron 40.0%
GGTATATCACCCTTAACGAA+CGG - chr2_3:12095536-12095555 None:intergenic 40.0%
AGAACAATATGTCCCAATGG+TGG + chr2_3:12095724-12095743 Msa0278920:CDS 40.0%
CACTTGTGGAAGACAATACT+TGG - chr2_3:12095852-12095871 None:intergenic 40.0%
! CAAGTATTGTCTTCCACAAG+TGG + chr2_3:12095850-12095869 Msa0278920:CDS 40.0%
TACATGTTGTGCTCTTATGG+TGG + chr2_3:12096142-12096161 Msa0278920:intron 40.0%
AGGGTAAAATAACGCAACTC+TGG - chr2_3:12096316-12096335 None:intergenic 40.0%
TTATGGTTCGTACATGTTGG+TGG - chr2_3:12096912-12096931 None:intergenic 40.0%
TGTGTGGTGTTTGTGCTAAT+TGG + chr2_3:12097075-12097094 Msa0278920:intron 40.0%
ATGAGACTACCAAGCATTCT+GGG - chr2_3:12097210-12097229 None:intergenic 40.0%
ATAGTTGTGAACTTTGTCGC+AGG + chr2_3:12097472-12097491 Msa0278920:intron 40.0%
TAGTTGTGAACTTTGTCGCA+GGG + chr2_3:12097473-12097492 Msa0278920:intron 40.0%
CGTATCGTTCAGCAAAATTG+AGG - chr2_3:12097507-12097526 None:intergenic 40.0%
TCAGCACAAGAAACTGTGTT+AGG - chr2_3:12097629-12097648 None:intergenic 40.0%
! AGTTGTCACAACCCATGTTT+TGG + chr2_3:12097830-12097849 Msa0278920:intron 40.0%
ACAAGCTTGTGAAATCTCAC+CGG - chr2_3:12098018-12098037 None:intergenic 40.0%
CAAGCTTGTAAGCCCTAATT+CGG + chr2_3:12098029-12098048 Msa0278920:intron 40.0%
AAGCTTGTAAGCCCTAATTC+GGG + chr2_3:12098030-12098049 Msa0278920:intron 40.0%
ATAAAAGTCTACGCTACTGC+TGG - chr2_3:12098086-12098105 None:intergenic 40.0%
TGTGGAACAAGGAATTTCGA+CGG - chr2_3:12098250-12098269 None:intergenic 40.0%
GCAAGTTCCATTAGGAAGAA+GGG + chr2_3:12098781-12098800 Msa0278920:CDS 40.0%
! AGGAAGATTTTGAGCTGCAA+GGG - chr2_3:12098828-12098847 None:intergenic 40.0%
AGTCGAGTAAGGTTGAAAGT+GGG - chr2_3:12098854-12098873 None:intergenic 40.0%
TAGTCGAGTAAGGTTGAAAG+TGG - chr2_3:12098855-12098874 None:intergenic 40.0%
CAACTAGATCAGTAGTACTG+AGG - chr2_3:12098901-12098920 None:intergenic 40.0%
TCGTGTTAAGAGTTGAATCG+GGG - chr2_3:12099149-12099168 None:intergenic 40.0%
GTCGTGTTAAGAGTTGAATC+GGG - chr2_3:12099150-12099169 None:intergenic 40.0%
GGTCGTGTTAAGAGTTGAAT+CGG - chr2_3:12099151-12099170 None:intergenic 40.0%
TTGCAAGCAATATGTCCCAA+TGG + chr2_3:12099183-12099202 Msa0278920:CDS 40.0%
AAATCGGTTAGGTTTGTACC+AGG - chr2_3:12099213-12099232 None:intergenic 40.0%
TGGTACAAACCTAACCGATT+TGG + chr2_3:12099212-12099231 Msa0278920:CDS 40.0%
CAAATGTATCTGGTGTGGTT+GGG - chr2_3:12099239-12099258 None:intergenic 40.0%
TCAAATGTATCTGGTGTGGT+TGG - chr2_3:12099240-12099259 None:intergenic 40.0%
TTGGAGATTGGAGTAGTAGT+TGG - chr2_3:12099265-12099284 None:intergenic 40.0%
TACTACTCCAATCTCCAAGT+TGG + chr2_3:12099267-12099286 Msa0278920:CDS 40.0%
! TCCAATCTCCAAGTTGGAAA+GGG + chr2_3:12099273-12099292 Msa0278920:CDS 40.0%
!!! GGAGTTTTAACTGGATCTCA+AGG + chr2_3:12099429-12099448 Msa0278920:CDS 40.0%
ACACAGTGTAATGCTGTGAA+TGG + chr2_3:12099462-12099481 Msa0278920:CDS 40.0%
CACAGTGTAATGCTGTGAAT+GGG + chr2_3:12099463-12099482 Msa0278920:CDS 40.0%
GAATGGGAATTCTTCTGGAT+TGG + chr2_3:12099479-12099498 Msa0278920:CDS 40.0%
GGTGCTCATACAATTGGTAG+AGG + chr2_3:12095610-12095629 Msa0278920:intron 45.0%
GTTGTGTTGAGAGTTGGATC+GGG - chr2_3:12095688-12095707 None:intergenic 45.0%
GGTTGTGTTGAGAGTTGGAT+CGG - chr2_3:12095689-12095708 None:intergenic 45.0%
TGGAGTGGTTGGATCCAAAT+CGG - chr2_3:12095767-12095786 None:intergenic 45.0%
! TCGAATGTATCTGGAGTGGT+TGG - chr2_3:12095778-12095797 None:intergenic 45.0%
CACTCCAGATACATTCGACT+CGG + chr2_3:12095780-12095799 Msa0278920:CDS 45.0%
CGGCCTACTATTCAAACCTA+AGG + chr2_3:12095800-12095819 Msa0278920:CDS 45.0%
! TGTTGTGCTCTTATGGTGGA+TGG + chr2_3:12096146-12096165 Msa0278920:intron 45.0%
! CAAAGTGCAAAAGCACATGG+TGG + chr2_3:12096637-12096656 Msa0278920:intron 45.0%
!! TGCAACAGCTTTTTGCTGTG+TGG + chr2_3:12097059-12097078 Msa0278920:intron 45.0%
GTGGTGTTTGTGCTAATTGG+AGG + chr2_3:12097078-12097097 Msa0278920:intron 45.0%
CAATCTGATCCCAGAATGCT+TGG + chr2_3:12097198-12097217 Msa0278920:CDS 45.0%
GATGAGACTACCAAGCATTC+TGG - chr2_3:12097211-12097230 None:intergenic 45.0%
! GAATGCTTGGTAGTCTCATC+AGG + chr2_3:12097211-12097230 Msa0278920:CDS 45.0%
AAACCAGATCAAAACAGCGG+TGG + chr2_3:12097592-12097611 Msa0278920:intron 45.0%
!!! TTTCCACCGCTGTTTTGATC+TGG - chr2_3:12097598-12097617 None:intergenic 45.0%
TGTAAGCCCTAATTCGGGTA+AGG + chr2_3:12098035-12098054 Msa0278920:intron 45.0%
CCTAATGGAACTTGCCAAGT+AGG - chr2_3:12098776-12098795 None:intergenic 45.0%
CCTACTTGGCAAGTTCCATT+AGG + chr2_3:12098773-12098792 Msa0278920:CDS 45.0%
GGCAAGTTCCATTAGGAAGA+AGG + chr2_3:12098780-12098799 Msa0278920:CDS 45.0%
! CAGGAAGATTTTGAGCTGCA+AGG - chr2_3:12098829-12098848 None:intergenic 45.0%
TCGAGTAAGGTTGAAAGTGG+GGG - chr2_3:12098852-12098871 None:intergenic 45.0%
GTCGAGTAAGGTTGAAAGTG+GGG - chr2_3:12098853-12098872 None:intergenic 45.0%
ACTGATCTAGTTGCACTCTC+AGG + chr2_3:12098908-12098927 Msa0278920:CDS 45.0%
CAAGCAATATGTCCCAATGG+TGG + chr2_3:12099186-12099205 Msa0278920:CDS 45.0%
TTTGTACCAGGTCCACCATT+GGG - chr2_3:12099201-12099220 None:intergenic 45.0%
GGAGTCAAATGTATCTGGTG+TGG - chr2_3:12099244-12099263 None:intergenic 45.0%
! CTCCAATCTCCAAGTTGGAA+AGG + chr2_3:12099272-12099291 Msa0278920:CDS 45.0%
GAAACAAGCCCTTTCCAACT+TGG - chr2_3:12099284-12099303 None:intergenic 45.0%
GCTGTGAATGGGAATTCTTC+TGG + chr2_3:12099474-12099493 Msa0278920:CDS 45.0%
!!! ATGTATTAAATTTATTTTTA+CGG - chr2_3:12098465-12098484 None:intergenic 5.0%
!!! ATTTTAACTATTTATTTTTA+CGG - chr2_3:12098575-12098594 None:intergenic 5.0%
GAGAGTTGGATCGGGATTTC+CGG - chr2_3:12095680-12095699 None:intergenic 50.0%
!! ATATGTCCCAATGGTGGACC+TGG + chr2_3:12095730-12095749 Msa0278920:CDS 50.0%
GGTTGGATCCAAATCGGTGA+GGG - chr2_3:12095761-12095780 None:intergenic 50.0%
TGGTTGGATCCAAATCGGTG+AGG - chr2_3:12095762-12095781 None:intergenic 50.0%
CGAGTCGAATGTATCTGGAG+TGG - chr2_3:12095782-12095801 None:intergenic 50.0%
TAGGCCGAGTCGAATGTATC+TGG - chr2_3:12095787-12095806 None:intergenic 50.0%
ATTGTCTTCCACAAGTGGCG+CGG + chr2_3:12095855-12095874 Msa0278920:CDS 50.0%
CGACTCTCTGGTGACTTTAG+TGG - chr2_3:12096040-12096059 None:intergenic 50.0%
!! CTCTTATGGTGGATGGCGAT+AGG + chr2_3:12096153-12096172 Msa0278920:intron 50.0%
!! ACATGTTGGTGGTTGGTGGT+TGG - chr2_3:12096901-12096920 None:intergenic 50.0%
!! TCGTACATGTTGGTGGTTGG+TGG - chr2_3:12096905-12096924 None:intergenic 50.0%
!! GGTTCGTACATGTTGGTGGT+TGG - chr2_3:12096908-12096927 None:intergenic 50.0%
GCTGTTGCACTAAGACCAAG+TGG - chr2_3:12097048-12097067 None:intergenic 50.0%
GCCTTGCCTTACCCGAATTA+GGG - chr2_3:12098044-12098063 None:intergenic 50.0%
AGCCTTGCCTTACCCGAATT+AGG - chr2_3:12098045-12098064 None:intergenic 50.0%
TTTCGACGGTTAACTACCGC+CGG - chr2_3:12098236-12098255 None:intergenic 50.0%
TGCAGGCAAATGGTCCTACT+TGG + chr2_3:12098759-12098778 Msa0278920:intron 50.0%
GGTGGCCATACAATTGGAAG+AGG + chr2_3:12099072-12099091 Msa0278920:intron 50.0%
!! ATATGTCCCAATGGTGGACC+TGG + chr2_3:12095730-12095749 Msa0278920:CDS 50.0%
GTTTGTACCAGGTCCACCAT+TGG - chr2_3:12099202-12099221 None:intergenic 50.0%
TGGTTGGGTCCAAATCGGTT+AGG - chr2_3:12099224-12099243 None:intergenic 50.0%
TGGTGTGGTTGGGTCCAAAT+CGG - chr2_3:12099229-12099248 None:intergenic 50.0%
GCCCTTTCCAACTTGGAGAT+TGG - chr2_3:12099277-12099296 None:intergenic 50.0%
GTGCTACCAGGTCCACCATT+GGG - chr2_3:12095739-12095758 None:intergenic 55.0%
!! AAATCGGTGAGGGTGCTACC+AGG - chr2_3:12095751-12095770 None:intergenic 55.0%
! TGGTAGCACCCTCACCGATT+TGG + chr2_3:12095750-12095769 Msa0278920:CDS 55.0%
AGTCACCAGAGAGTCGTCAG+AGG + chr2_3:12096044-12096063 Msa0278920:CDS 55.0%
ACCAGAGAGTCGTCAGAGGA+TGG + chr2_3:12096048-12096067 Msa0278920:CDS 55.0%
ACCATCCTCTGACGACTCTC+TGG - chr2_3:12096052-12096071 None:intergenic 55.0%
GCCCTAATTCGGGTAAGGCA+AGG + chr2_3:12098040-12098059 Msa0278920:intron 55.0%
GTAAGGTTGAAAGTGGGGGC+AGG - chr2_3:12098848-12098867 None:intergenic 55.0%
! GGTGCTACCAGGTCCACCAT+TGG - chr2_3:12095740-12095759 None:intergenic 60.0%
AATCGTGTCCGCGCCACTTG+TGG - chr2_3:12095866-12095885 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 12095519 12099857 12095519 ID=Msa0278920;Name=Msa0278920
chr2_3 mRNA 12095519 12099857 12095519 ID=Msa0278920-mRNA-1;Parent=Msa0278920;Name=Msa0278920-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.5|0.42|0.85|0.83|0.71|7|266|456
chr2_3 exon 12095519 12095534 12095519 ID=Msa0278920-mRNA-1:exon:5445;Parent=Msa0278920-mRNA-1
chr2_3 exon 12095611 12096069 12095611 ID=Msa0278920-mRNA-1:exon:5446;Parent=Msa0278920-mRNA-1
chr2_3 exon 12097100 12097260 12097100 ID=Msa0278920-mRNA-1:exon:5447;Parent=Msa0278920-mRNA-1
chr2_3 exon 12097599 12097685 12097599 ID=Msa0278920-mRNA-1:exon:5448;Parent=Msa0278920-mRNA-1
chr2_3 exon 12098764 12098929 12098764 ID=Msa0278920-mRNA-1:exon:5449;Parent=Msa0278920-mRNA-1
chr2_3 exon 12099073 12099659 12099073 ID=Msa0278920-mRNA-1:exon:5450;Parent=Msa0278920-mRNA-1
chr2_3 exon 12099697 12099857 12099697 ID=Msa0278920-mRNA-1:exon:5451;Parent=Msa0278920-mRNA-1
chr2_3 CDS 12095519 12095534 12095519 ID=Msa0278920-mRNA-1:cds;Parent=Msa0278920-mRNA-1
chr2_3 CDS 12095611 12096069 12095611 ID=Msa0278920-mRNA-1:cds;Parent=Msa0278920-mRNA-1
chr2_3 CDS 12097100 12097260 12097100 ID=Msa0278920-mRNA-1:cds;Parent=Msa0278920-mRNA-1
chr2_3 CDS 12097599 12097685 12097599 ID=Msa0278920-mRNA-1:cds;Parent=Msa0278920-mRNA-1
chr2_3 CDS 12098764 12098929 12098764 ID=Msa0278920-mRNA-1:cds;Parent=Msa0278920-mRNA-1
chr2_3 CDS 12099073 12099554 12099073 ID=Msa0278920-mRNA-1:cds;Parent=Msa0278920-mRNA-1
chr2_3 three_prime_UTR 12099555 12099659 12099555 ID=Msa0278920-mRNA-1:three_prime_utr;Parent=Msa0278920-mRNA-1
chr2_3 three_prime_UTR 12099697 12099857 12099697 ID=Msa0278920-mRNA-1:three_prime_utr;Parent=Msa0278920-mRNA-1
Gene Sequence

>Msa0278920

ATGAGATTTGAACTCCGTGCTCATACAATTGGTAGAGGTCAATGCAGATTCTTCGTTGATCGATTATACAATTTCAGCAACACCGGAAATCCCGATCCAACTCTCAACACAACCTATTTACAAACATTGAGAACAATATGTCCCAATGGTGGACCTGGTAGCACCCTCACCGATTTGGATCCAACCACTCCAGATACATTCGACTCGGCCTACTATTCAAACCTAAGGATTCAAAAAGGCTTGTTTGAGAGTGACCAAGTATTGTCTTCCACAAGTGGCGCGGACACGATTGCCATTGTCAATAGTTTCAACAACAACCAAACTCTTTTCTTTGAAGCTTTTAAGGCCTCAATGATTAAAATGAGTAAAATTAAAGTGTTAACTGGATCTCAAGGTGAAATTAGAAAACAATGTAACTTTGTTAATGGAAATTCTGGTCTTGCCACTAAAGTCACCAGAGAGTCGTCAGAGGATGGAGTACCCTTTTCAAATGCACAGCTAGATCCTTCATTTTACAATAGTACATGTTCTAATCTTGATTCAATCGTACGTGGTGTGCTCACAAATGTTTCACAATCTGATCCCAGAATGCTTGGTAGTCTCATCAGGCTACATTTTCATGACTGTTTTGTTCAAATCAAAACAGCGGTGGAAAATGCTTGTCCTAACACAGTTTCTTGTGCTGATATTCTTGCTCTTTCTGCTGAAATATCATCTGATCTGGCAAATGGTCCTACTTGGCAAGTTCCATTAGGAAGAAGGGATAGTTTGACAGCAAATAATTCCCTTGCAGCTCAAAATCTTCCTGCCCCCACTTTCAACCTTACTCGACTAAAATCTAACTTTGATAATCAAAACCTCAGTACTACTGATCTAGTTGCACTCTCAGGTGGCCATACAATTGGAAGAGGTCAATGCAGATTTTTCGTTGATCGATTATACAATTTCAGCAACACTGGAAACCCCGATTCAACTCTTAACACGACCTATTTACAAACATTGCAAGCAATATGTCCCAATGGTGGACCTGGTACAAACCTAACCGATTTGGACCCAACCACACCAGATACATTTGACTCCAACTACTACTCCAATCTCCAAGTTGGAAAGGGCTTGTTTCAGAGTGACCAAGAGCTTTTTTCCACAAATGGTTCTGACACTATTTCTATTGTCAGTAGTTTCGCCAATAATCAAACTCTCTTCTTTGAAAATTTTGTTGCCTCAATGATAAAAATGGGTAATATTGGAGTTTTAACTGGATCTCAAGGTGAAATTAGAACACAGTGTAATGCTGTGAATGGGAATTCTTCTGGATTGGCTACTGTAGTCACCAAAGAATCATCAGAAGATGGAATGGCTAGCTCATTCTAA
Protein sequence

>Msa0278920

MRFELRAHTIGRGQCRFFVDRLYNFSNTGNPDPTLNTTYLQTLRTICPNGGPGSTLTDLDPTTPDTFDSAYYSNLRIQKGLFESDQVLSSTSGADTIAIVNSFNNNQTLFFEAFKASMIKMSKIKVLTGSQGEIRKQCNFVNGNSGLATKVTRESSEDGVPFSNAQLDPSFYNSTCSNLDSIVRGVLTNVSQSDPRMLGSLIRLHFHDCFVQIKTAVENACPNTVSCADILALSAEISSDLANGPTWQVPLGRRDSLTANNSLAAQNLPAPTFNLTRLKSNFDNQNLSTTDLVALSGGHTIGRGQCRFFVDRLYNFSNTGNPDSTLNTTYLQTLQAICPNGGPGTNLTDLDPTTPDTFDSNYYSNLQVGKGLFQSDQELFSTNGSDTISIVSSFANNQTLFFENFVASMIKMGNIGVLTGSQGEIRTQCNAVNGNSSGLATVVTKESSEDGMASSF*