Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1375580 | XP_003604078.1 | 97.701 | 348 | 8 | 0 | 1 | 348 | 1 | 348 | 0.0 | 701 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1375580 | sp|O64862|CTU1_ARATH | 85.756 | 344 | 46 | 2 | 8 | 348 | 12 | 355 | 0.0 | 610 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1375580 | G7J985 | 97.701 | 348 | 8 | 0 | 1 | 348 | 1 | 348 | 0.0 | 701 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001520 | Msa1375580 | 0.983947 | 3.727697e-159 | -8.615850e-47 |
| Msa0015090 | Msa1375580 | 0.802015 | 6.856476e-49 | -8.615850e-47 |
| Msa0017320 | Msa1375580 | 0.811079 | 8.375298e-51 | -8.615850e-47 |
| Msa0020390 | Msa1375580 | 0.830560 | 2.740937e-55 | -8.615850e-47 |
| Msa0029260 | Msa1375580 | 0.818411 | 1.987429e-52 | -8.615850e-47 |
| Msa0033880 | Msa1375580 | 0.812739 | 3.643441e-51 | -8.615850e-47 |
| Msa0037770 | Msa1375580 | 0.808062 | 3.724358e-50 | -8.615850e-47 |
| Msa0049750 | Msa1375580 | 0.805395 | 1.362868e-49 | -8.615850e-47 |
| Msa0071250 | Msa1375580 | 0.809347 | 1.978996e-50 | -8.615850e-47 |
| Msa0076780 | Msa1375580 | 0.839839 | 1.246330e-57 | -8.615850e-47 |
| Msa0081650 | Msa1375580 | 0.804336 | 2.268722e-49 | -8.615850e-47 |
| Msa0096700 | Msa1375580 | 0.803846 | 2.868779e-49 | -8.615850e-47 |
| Msa0115190 | Msa1375580 | 0.803811 | 2.917573e-49 | -8.615850e-47 |
| Msa0118540 | Msa1375580 | 0.814702 | 1.346419e-51 | -8.615850e-47 |
| Msa1351540 | Msa1375580 | 0.847964 | 8.284237e-60 | -8.615850e-47 |
| Msa1375580 | Msa1376580 | 0.942113 | 1.276161e-101 | -8.615850e-47 |
| Msa1375580 | Msa1381650 | 0.802115 | 6.537085e-49 | -8.615850e-47 |
| Msa1375580 | Msa1401460 | 0.801842 | 7.439618e-49 | -8.615850e-47 |
| Msa1375580 | Msa1406070 | 0.838383 | 2.971692e-57 | -8.615850e-47 |
| Msa1375580 | Msa1407970 | 0.800137 | 1.659726e-48 | -8.615850e-47 |
| Msa1375580 | Msa1434090 | 0.800775 | 1.230109e-48 | -8.615850e-47 |
| Msa1375580 | Msa1438840 | 0.811267 | 7.627154e-51 | -8.615850e-47 |
| Msa1375580 | Msa1447890 | 0.814927 | 1.200858e-51 | -8.615850e-47 |
| Msa1375580 | Msa1450720 | 0.831405 | 1.700462e-55 | -8.615850e-47 |
| Msa1375580 | Msa1454680 | 0.808404 | 3.149460e-50 | -8.615850e-47 |
| Msa1375580 | Msa1454960 | 0.803288 | 3.745084e-49 | -8.615850e-47 |
| Msa1375580 | Msa1458090 | 0.810365 | 1.195344e-50 | -8.615850e-47 |
| Msa0604290 | Msa1375580 | 0.807142 | 5.840418e-50 | -8.615850e-47 |
| Msa0605000 | Msa1375580 | 0.807517 | 4.862783e-50 | -8.615850e-47 |
| Msa0640940 | Msa1375580 | 0.816618 | 5.039686e-52 | -8.615850e-47 |
| Msa0643320 | Msa1375580 | 0.825118 | 5.579605e-54 | -8.615850e-47 |
| Msa0669720 | Msa1375580 | 0.804206 | 2.414395e-49 | -8.615850e-47 |
| Msa0672550 | Msa1375580 | 0.830296 | 3.181526e-55 | -8.615850e-47 |
| Msa0679360 | Msa1375580 | 0.813002 | 3.190432e-51 | -8.615850e-47 |
| Msa0683140 | Msa1375580 | 0.828913 | 6.901905e-55 | -8.615850e-47 |
| Msa0683600 | Msa1375580 | 0.808903 | 2.464268e-50 | -8.615850e-47 |
| Msa0689440 | Msa1375580 | 0.806128 | 9.560689e-50 | -8.615850e-47 |
| Msa0702370 | Msa1375580 | 0.821065 | 4.921410e-53 | -8.615850e-47 |
| Msa0703910 | Msa1375580 | 0.805243 | 1.466856e-49 | -8.615850e-47 |
| Msa0705390 | Msa1375580 | 0.814134 | 1.797941e-51 | -8.615850e-47 |
| Msa0743990 | Msa1375580 | 0.800638 | 1.312056e-48 | -8.615850e-47 |
| Msa0763920 | Msa1375580 | 0.801333 | 9.459870e-49 | -8.615850e-47 |
| Msa0789560 | Msa1375580 | 0.801275 | 9.721711e-49 | -8.615850e-47 |
| Msa0126840 | Msa1375580 | 0.822680 | 2.081194e-53 | -8.615850e-47 |
| Msa0127020 | Msa1375580 | 0.805065 | 1.598093e-49 | -8.615850e-47 |
| Msa0127040 | Msa1375580 | 0.843422 | 1.415222e-58 | -8.615850e-47 |
| Msa0127850 | Msa1375580 | 0.807578 | 4.721214e-50 | -8.615850e-47 |
| Msa0169280 | Msa1375580 | 0.806912 | 6.531293e-50 | -8.615850e-47 |
| Msa0169300 | Msa1375580 | 0.816002 | 6.920777e-52 | -8.615850e-47 |
| Msa0174000 | Msa1375580 | 0.821077 | 4.891913e-53 | -8.615850e-47 |
| Msa0175200 | Msa1375580 | 0.806133 | 9.537373e-50 | -8.615850e-47 |
| Msa0202410 | Msa1375580 | 0.809006 | 2.341994e-50 | -8.615850e-47 |
| Msa0223330 | Msa1375580 | 0.823503 | 1.337115e-53 | -8.615850e-47 |
| Msa0233370 | Msa1375580 | 0.834043 | 3.765852e-56 | -8.615850e-47 |
| Msa1264210 | Msa1375580 | 0.806120 | 9.595770e-50 | -8.615850e-47 |
| Msa1276970 | Msa1375580 | 0.806244 | 9.038387e-50 | -8.615850e-47 |
| Msa1302380 | Msa1375580 | 0.816474 | 5.428664e-52 | -8.615850e-47 |
| Msa1304810 | Msa1375580 | 0.817122 | 3.884521e-52 | -8.615850e-47 |
| Msa1307180 | Msa1375580 | 0.800957 | 1.129557e-48 | -8.615850e-47 |
| Msa1316360 | Msa1375580 | 0.824219 | 9.088216e-54 | -8.615850e-47 |
| Msa1329790 | Msa1375580 | 0.803842 | 2.873968e-49 | -8.615850e-47 |
| Msa1332590 | Msa1375580 | 0.813310 | 2.731474e-51 | -8.615850e-47 |
| Msa1336040 | Msa1375580 | 0.803026 | 4.242409e-49 | -8.615850e-47 |
| Msa0380370 | Msa1375580 | 0.992206 | 6.394652e-192 | -8.615850e-47 |
| Msa0382370 | Msa1375580 | 0.812730 | 3.659666e-51 | -8.615850e-47 |
| Msa0385490 | Msa1375580 | 0.802382 | 5.760058e-49 | -8.615850e-47 |
| Msa0387910 | Msa1375580 | 0.804289 | 2.319997e-49 | -8.615850e-47 |
| Msa0388730 | Msa1375580 | 0.805231 | 1.474875e-49 | -8.615850e-47 |
| Msa0395980 | Msa1375580 | 0.804156 | 2.473318e-49 | -8.615850e-47 |
| Msa0403500 | Msa1375580 | 0.812858 | 3.431305e-51 | -8.615850e-47 |
| Msa0427580 | Msa1375580 | 0.830701 | 2.531777e-55 | -8.615850e-47 |
| Msa0430060 | Msa1375580 | 0.844596 | 6.856675e-59 | -8.615850e-47 |
| Msa0430150 | Msa1375580 | 0.845176 | 4.780580e-59 | -8.615850e-47 |
| Msa0450930 | Msa1375580 | 0.821705 | 3.502920e-53 | -8.615850e-47 |
| Msa0458640 | Msa1375580 | 0.804347 | 2.256420e-49 | -8.615850e-47 |
| Msa0467220 | Msa1375580 | 0.831239 | 1.868345e-55 | -8.615850e-47 |
| Msa0481030 | Msa1375580 | 0.831669 | 1.464647e-55 | -8.615850e-47 |
| Msa0985220 | Msa1375580 | 0.808542 | 2.942191e-50 | -8.615850e-47 |
| Msa0992580 | Msa1375580 | 0.820412 | 6.955664e-53 | -8.615850e-47 |
| Msa0993240 | Msa1375580 | 0.802845 | 4.624097e-49 | -8.615850e-47 |
| Msa0994370 | Msa1375580 | 0.800070 | 1.712130e-48 | -8.615850e-47 |
| Msa1027250 | Msa1375580 | 0.821694 | 3.524126e-53 | -8.615850e-47 |
| Msa1027300 | Msa1375580 | 0.816673 | 4.897600e-52 | -8.615850e-47 |
| Msa1027360 | Msa1375580 | 0.827861 | 1.238021e-54 | -8.615850e-47 |
| Msa1036740 | Msa1375580 | 0.818189 | 2.232361e-52 | -8.615850e-47 |
| Msa1071320 | Msa1375580 | 0.811233 | 7.757822e-51 | -8.615850e-47 |
| Msa1088290 | Msa1375580 | 0.834146 | 3.548065e-56 | -8.615850e-47 |
| Msa1093100 | Msa1375580 | 0.825743 | 3.969202e-54 | -8.615850e-47 |
| Msa0244970 | Msa1375580 | 0.854332 | 1.320443e-61 | -8.615850e-47 |
| Msa0244980 | Msa1375580 | 0.823000 | 1.753099e-53 | -8.615850e-47 |
| Msa0249310 | Msa1375580 | 0.830632 | 2.632630e-55 | -8.615850e-47 |
| Msa0265150 | Msa1375580 | 0.800717 | 1.264057e-48 | -8.615850e-47 |
| Msa0271360 | Msa1375580 | 0.808059 | 3.730948e-50 | -8.615850e-47 |
| Msa0275360 | Msa1375580 | 0.820139 | 8.031255e-53 | -8.615850e-47 |
| Msa0283420 | Msa1375580 | 0.832966 | 6.991438e-56 | -8.615850e-47 |
| Msa0287790 | Msa1375580 | 0.819488 | 1.131104e-52 | -8.615850e-47 |
| Msa0296790 | Msa1375580 | 0.804686 | 1.917652e-49 | -8.615850e-47 |
| Msa0296920 | Msa1375580 | 0.822861 | 1.888388e-53 | -8.615850e-47 |
| Msa0311720 | Msa1375580 | 0.845471 | 3.978581e-59 | -8.615850e-47 |
| Msa0321690 | Msa1375580 | 0.843596 | 1.271714e-58 | -8.615850e-47 |
| Msa0330310 | Msa1375580 | 0.829820 | 4.156852e-55 | -8.615850e-47 |
| Msa0339910 | Msa1375580 | 0.822492 | 2.301174e-53 | -8.615850e-47 |
| Msa1126850 | Msa1375580 | 0.815530 | 8.818497e-52 | -8.615850e-47 |
| Msa1128270 | Msa1375580 | 0.811123 | 8.194093e-51 | -8.615850e-47 |
| Msa1163870 | Msa1375580 | 0.822537 | 2.246006e-53 | -8.615850e-47 |
| Msa1165960 | Msa1375580 | 0.814752 | 1.313041e-51 | -8.615850e-47 |
| Msa1176360 | Msa1375580 | 0.826576 | 2.514610e-54 | -8.615850e-47 |
| Msa1201640 | Msa1375580 | 0.803437 | 3.488386e-49 | -8.615850e-47 |
| Msa1205480 | Msa1375580 | 0.807943 | 3.948523e-50 | -8.615850e-47 |
| Msa1208370 | Msa1375580 | 0.802079 | 6.651129e-49 | -8.615850e-47 |
| Msa1211340 | Msa1375580 | 0.804314 | 2.292140e-49 | -8.615850e-47 |
| Msa1218500 | Msa1375580 | 0.808230 | 3.429992e-50 | -8.615850e-47 |
| Msa0491000 | Msa1375580 | 0.803172 | 3.957258e-49 | -8.615850e-47 |
| Msa0500470 | Msa1375580 | 0.822752 | 2.002653e-53 | -8.615850e-47 |
| Msa0510840 | Msa1375580 | 0.800866 | 1.178774e-48 | -8.615850e-47 |
| Msa0518170 | Msa1375580 | 0.818409 | 1.990043e-52 | -8.615850e-47 |
| Msa0530100 | Msa1375580 | 0.805377 | 1.374515e-49 | -8.615850e-47 |
| Msa0542290 | Msa1375580 | 0.804871 | 1.754602e-49 | -8.615850e-47 |
| Msa0542560 | Msa1375580 | 0.807497 | 4.910899e-50 | -8.615850e-47 |
| Msa0550540 | Msa1375580 | 0.802370 | 5.794568e-49 | -8.615850e-47 |
| Msa0554290 | Msa1375580 | 0.808746 | 2.662356e-50 | -8.615850e-47 |
| Msa0555640 | Msa1375580 | 0.809457 | 1.874469e-50 | -8.615850e-47 |
| Msa0581130 | Msa1375580 | 0.806785 | 6.947801e-50 | -8.615850e-47 |
| Msa0600450 | Msa1375580 | 0.800474 | 1.416865e-48 | -8.615850e-47 |
| Msa0602370 | Msa1375580 | 0.805447 | 1.329319e-49 | -8.615850e-47 |
| Msa0844110 | Msa1375580 | 0.826051 | 3.352971e-54 | -8.615850e-47 |
| Msa0861570 | Msa1375580 | 0.807372 | 5.219248e-50 | -8.615850e-47 |
| Msa0867120 | Msa1375580 | 0.800049 | 1.729661e-48 | -8.615850e-47 |
| Msa0880040 | Msa1375580 | 0.825810 | 3.827053e-54 | -8.615850e-47 |
| Msa0880730 | Msa1375580 | 0.808076 | 3.698469e-50 | -8.615850e-47 |
| Msa0883520 | Msa1375580 | 0.829291 | 5.589525e-55 | -8.615850e-47 |
| Msa0887250 | Msa1375580 | 0.809214 | 2.113303e-50 | -8.615850e-47 |
| Msa0892640 | Msa1375580 | 0.834621 | 2.696593e-56 | -8.615850e-47 |
| Msa0913240 | Msa1375580 | 0.817969 | 2.502156e-52 | -8.615850e-47 |
| Msa0937330 | Msa1375580 | 0.803284 | 3.750941e-49 | -8.615850e-47 |
| Msa0958030 | Msa1375580 | 0.817391 | 3.378343e-52 | -8.615850e-47 |
| Msa0964060 | Msa1375580 | 0.813108 | 3.024074e-51 | -8.615850e-47 |
| Msa0970530 | Msa1375580 | 0.803585 | 3.249470e-49 | -8.615850e-47 |
| Msa0970600 | Msa1375580 | 0.809167 | 2.163007e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1375580 | MtrunA17_Chr3g0145891 | 97.701 | 348 | 8 | 0 | 1 | 348 | 1 | 348 | 0.0 | 701 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1375580 | AT2G44270.1 | 85.756 | 344 | 46 | 2 | 8 | 348 | 12 | 355 | 0.0 | 610 |
| Msa1375580 | AT1G76170.1 | 83.699 | 319 | 50 | 1 | 32 | 348 | 14 | 332 | 0.0 | 554 |
| Msa1375580 | AT1G76170.7 | 75.852 | 352 | 50 | 2 | 32 | 348 | 14 | 365 | 0.0 | 536 |
| Msa1375580 | AT1G76170.4 | 85.232 | 237 | 33 | 1 | 114 | 348 | 9 | 245 | 1.43e-149 | 421 |
| Msa1375580 | AT1G76170.3 | 85.232 | 237 | 33 | 1 | 114 | 348 | 9 | 245 | 1.43e-149 | 421 |
| Msa1375580 | AT1G76170.5 | 85.232 | 237 | 33 | 1 | 114 | 348 | 9 | 245 | 1.43e-149 | 421 |
| Msa1375580 | AT1G76170.2 | 74.815 | 270 | 33 | 2 | 114 | 348 | 9 | 278 | 1.32e-142 | 405 |
| Msa1375580 | AT1G76170.6 | 81.863 | 204 | 35 | 1 | 147 | 348 | 3 | 206 | 6.07e-118 | 340 |
Find 138 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATCGAGGTTTGCCTAAAT+TGG | 0.168714 | tig0019730:+13369 | Msa1375580:CDS |
| ATCCTTAAACTTAAAGTAAA+AGG | 0.169323 | tig0019730:-14767 | None:intergenic |
| TCACCACTTTATCTGCTTTC+AGG | 0.179782 | tig0019730:-12518 | None:intergenic |
| GGTATTCAATTCAGTAATTA+TGG | 0.206691 | tig0019730:+14900 | Msa1375580:three_prime_UTR |
| CATTCCCTGTTCAGGCATTT+TGG | 0.211621 | tig0019730:-12938 | None:intergenic |
| TTATCATGCTGGAGAGGTTC+TGG | 0.214255 | tig0019730:+14617 | Msa1375580:three_prime_UTR |
| GCAGAAGACGTGTTAATATT+AGG | 0.231582 | tig0019730:-15223 | None:intergenic |
| AAAGCTTGTGTTCTGCTTGA+TGG | 0.278301 | tig0019730:+13343 | Msa1375580:CDS |
| GTTCTCTTTATGCTCAAGTT+TGG | 0.288520 | tig0019730:+14682 | Msa1375580:three_prime_UTR |
| ATCGTGAACGCGGTTGAGTT+TGG | 0.296360 | tig0019730:-12259 | None:intergenic |
| CTGGAGAGGTTCTGGGTGTC+AGG | 0.299440 | tig0019730:+14625 | Msa1375580:three_prime_UTR |
| CATAGAAATCAGATTGAGTA+TGG | 0.304991 | tig0019730:+12357 | Msa1375580:CDS |
| TCAAGGATTTGGAGAGAATC+AGG | 0.330630 | tig0019730:+12787 | Msa1375580:CDS |
| CTTGCAGTTTGCAATTATCT+AGG | 0.335601 | tig0019730:+14852 | Msa1375580:three_prime_UTR |
| TAATCCCACATCATGTTATA+AGG | 0.349880 | tig0019730:+15020 | Msa1375580:three_prime_UTR |
| CTCCGTCCAATTCCCAATTT+AGG | 0.357743 | tig0019730:-13382 | None:intergenic |
| CACTACCAAAATGCCTGAAC+AGG | 0.365011 | tig0019730:+12933 | Msa1375580:CDS |
| GCGATACTCCGATAGGGTTT+AGG | 0.365671 | tig0019730:+11988 | Msa1375580:five_prime_UTR |
| TCGTGAGTTCATCAAGGATT+TGG | 0.380248 | tig0019730:+12776 | Msa1375580:CDS |
| TTCTTTCATGTATCCATCAT+AGG | 0.381974 | tig0019730:-14423 | None:intergenic |
| CGAGTCGCCATCGGAGCTTC+CGG | 0.383557 | tig0019730:+12201 | Msa1375580:CDS |
| ATTCTCGACATCATCAAATC+AGG | 0.388920 | tig0019730:+12889 | Msa1375580:CDS |
| TAAAATTGAAATTATGAAGT+TGG | 0.393598 | tig0019730:+14947 | Msa1375580:three_prime_UTR |
| GGTTTGCCTAAATTGGGAAT+TGG | 0.398830 | tig0019730:+13376 | Msa1375580:CDS |
| CTCAACCGCGTTCACGATTA+CGG | 0.403364 | tig0019730:+12264 | Msa1375580:CDS |
| TACTTGAAAGGTTTGCATCT+AGG | 0.405107 | tig0019730:-12654 | None:intergenic |
| TTTCACAAAGGAGAACCTAA+TGG | 0.409363 | tig0019730:+14577 | Msa1375580:three_prime_UTR |
| TCTCAATGCTCTTTGTTCCA+TGG | 0.409913 | tig0019730:-13441 | None:intergenic |
| AATCGAGGTTTGCCTAAATT+GGG | 0.412591 | tig0019730:+13370 | Msa1375580:CDS |
| AGATGCAGTTCAATCATAAC+AGG | 0.415710 | tig0019730:+12615 | Msa1375580:CDS |
| CGTTCACACATTCCCTGTTC+AGG | 0.416347 | tig0019730:-12946 | None:intergenic |
| ATTCTCTGCAAATCTGTTGA+AGG | 0.418305 | tig0019730:-12107 | None:intergenic |
| CTGTGGTTATATTTCTAGTC+AGG | 0.427289 | tig0019730:+12969 | Msa1375580:CDS |
| TGAAATTATGAAGTTGGCTA+AGG | 0.432295 | tig0019730:+14953 | Msa1375580:three_prime_UTR |
| ACAGCATACTTCAATCCATT+AGG | 0.432651 | tig0019730:-14592 | None:intergenic |
| TGAAAGAAGGGGTTGGAGAT+GGG | 0.434335 | tig0019730:+14438 | Msa1375580:three_prime_UTR |
| ATTGGGAATTGGACGGAGTC+GGG | 0.434977 | tig0019730:+13387 | Msa1375580:CDS |
| TATCATGCTGGAGAGGTTCT+GGG | 0.440318 | tig0019730:+14618 | Msa1375580:three_prime_UTR |
| ACTTGAAAGGTTTGCATCTA+GGG | 0.444185 | tig0019730:-12653 | None:intergenic |
| TTGCAATTATCTAGGCTACT+TGG | 0.448017 | tig0019730:+14860 | Msa1375580:three_prime_UTR |
| ATGAAAGAAGGGGTTGGAGA+TGG | 0.453760 | tig0019730:+14437 | Msa1375580:three_prime_UTR |
| AATCTAGGGCTTACCTATGA+TGG | 0.456946 | tig0019730:+14410 | Msa1375580:intron |
| CCAACCGTACAAATCCTTGT+AGG | 0.458072 | tig0019730:-12400 | None:intergenic |
| GCAAAACCACGATAAGCATT+TGG | 0.460833 | tig0019730:-12753 | None:intergenic |
| CTCGGTCGCCGCGGTTGAAG+AGG | 0.461559 | tig0019730:-12182 | None:intergenic |
| TTTCAAGTACACTTATGAAA+AGG | 0.467314 | tig0019730:+12668 | Msa1375580:CDS |
| TGGTCATGAAGACATGATAA+TGG | 0.472410 | tig0019730:+14461 | Msa1375580:three_prime_UTR |
| AGTATTCCGTCGGCAGGCAC+TGG | 0.472532 | tig0019730:+12479 | Msa1375580:CDS |
| AGAGAAGAGAAGAGAATGGA+AGG | 0.472766 | tig0019730:+12018 | Msa1375580:exon |
| AAGAAGAGAAGAGAAGAGAA+TGG | 0.476952 | tig0019730:+12014 | Msa1375580:exon |
| TCCTTAAACTTAAAGTAAAA+GGG | 0.484817 | tig0019730:-14766 | None:intergenic |
| TTCTCTGCAAATCTGTTGAA+GGG | 0.489182 | tig0019730:-12106 | None:intergenic |
| GGACGGAGTCGGGTTGCCAT+TGG | 0.493561 | tig0019730:+13397 | Msa1375580:CDS |
| GATGATGTCGAGAATTGCCC+TGG | 0.494801 | tig0019730:-12881 | None:intergenic |
| TGTCAGGGAGTAGAGTCTTT+CGG | 0.499718 | tig0019730:+14641 | Msa1375580:three_prime_UTR |
| CAATTATCTAGGCTACTTGG+TGG | 0.502051 | tig0019730:+14863 | Msa1375580:three_prime_UTR |
| AAAGCAGATAAAGTGGTGAC+TGG | 0.502432 | tig0019730:+12522 | Msa1375580:CDS |
| TCAATCATAACAGGTGAAGA+TGG | 0.503044 | tig0019730:+12624 | Msa1375580:CDS |
| TATGATGGATACATGAAAGA+AGG | 0.504310 | tig0019730:+14425 | Msa1375580:three_prime_UTR |
| AAGAGAATCGTCGCGGTAGC+CGG | 0.507747 | tig0019730:-12325 | None:intergenic |
| CGACGGAGAGGAGGAAGAGA+TGG | 0.508983 | tig0019730:-12290 | None:intergenic |
| GAAAGGTTTGCATCTAGGGA+TGG | 0.511544 | tig0019730:-12649 | None:intergenic |
| TCGGGTTGCCATTGGTTGCA+AGG | 0.511777 | tig0019730:+13405 | Msa1375580:CDS |
| AATTGGGAATTGGACGGAGT+CGG | 0.513581 | tig0019730:+13386 | Msa1375580:CDS |
| GTGCTGTTAAACATATTAAG+AGG | 0.514072 | tig0019730:+12573 | Msa1375580:CDS |
| GACGAGATCGTGAAACTGAT+CGG | 0.520675 | tig0019730:+12429 | Msa1375580:CDS |
| GCCGGTGATGCCCTCGTCGA+CGG | 0.523389 | tig0019730:-12307 | None:intergenic |
| CGGAAGCTCCGATGGCGACT+CGG | 0.524339 | tig0019730:-12200 | None:intergenic |
| CTGTGGAGTATTCCGTCGGC+AGG | 0.524599 | tig0019730:+12473 | Msa1375580:CDS |
| CGCGGCGACCGAGTCGCCAT+CGG | 0.524812 | tig0019730:+12192 | Msa1375580:CDS |
| CTCAATCTGATTTCTATGAA+CGG | 0.526078 | tig0019730:-12352 | None:intergenic |
| CTCGATCCAGTGCCTGCCGA+CGG | 0.528294 | tig0019730:-12485 | None:intergenic |
| GACGGTTGAGTCTTTGCCGC+CGG | 0.528852 | tig0019730:-12220 | None:intergenic |
| GAGAAGAGAAGAGAATGGAA+GGG | 0.529426 | tig0019730:+12019 | Msa1375580:exon |
| TGGAGAGGTTCTGGGTGTCA+GGG | 0.531459 | tig0019730:+14626 | Msa1375580:three_prime_UTR |
| TTCTCGACATCATCAAATCA+GGG | 0.532862 | tig0019730:+12890 | Msa1375580:CDS |
| AAGAACAATTGCACCTTCTG+TGG | 0.538204 | tig0019730:+12456 | Msa1375580:CDS |
| TGGCTAAGGGAAAGATTAGG+TGG | 0.538841 | tig0019730:+14967 | Msa1375580:three_prime_UTR |
| ATGATGGATACATGAAAGAA+GGG | 0.543140 | tig0019730:+14426 | Msa1375580:three_prime_UTR |
| GAAATTATGAAGTTGGCTAA+GGG | 0.543239 | tig0019730:+14954 | Msa1375580:three_prime_UTR |
| AAAGGTTTGCATCTAGGGAT+GGG | 0.544209 | tig0019730:-12648 | None:intergenic |
| GATCACCTTATAACATGATG+TGG | 0.544530 | tig0019730:-15025 | None:intergenic |
| AGTTGGCTAAGGGAAAGATT+AGG | 0.546118 | tig0019730:+14964 | Msa1375580:three_prime_UTR |
| TTTGCCGCCGGAAGCTCCGA+TGG | 0.549277 | tig0019730:-12208 | None:intergenic |
| GGTCGCCGCGGTTGAAGAGG+CGG | 0.550640 | tig0019730:-12179 | None:intergenic |
| TTCTTCTACCTAAACCCTAT+CGG | 0.554472 | tig0019730:-11996 | None:intergenic |
| TTCCTCCTCTCCGTCGACGA+GGG | 0.558587 | tig0019730:+12297 | Msa1375580:CDS |
| GGATACATGAAAGAAGGGGT+TGG | 0.560149 | tig0019730:+14431 | Msa1375580:three_prime_UTR |
| GTAGGCATCATATCATATGA+AGG | 0.563573 | tig0019730:+13501 | Msa1375580:three_prime_UTR |
| TGCCTAAATTGGGAATTGGA+CGG | 0.566018 | tig0019730:+13380 | Msa1375580:CDS |
| TGCCCTCGTCGACGGAGAGG+AGG | 0.566136 | tig0019730:-12299 | None:intergenic |
| TCCGTCGACGAGGGCATCAC+CGG | 0.572273 | tig0019730:+12306 | Msa1375580:CDS |
| TATGTTTAACAGCACCGTCT+CGG | 0.572864 | tig0019730:-12565 | None:intergenic |
| TCTCAAAGTCGTATCCTACA+AGG | 0.578252 | tig0019730:+12386 | Msa1375580:CDS |
| TTGTAGGATACGACTTTGAG+AGG | 0.578638 | tig0019730:-12384 | None:intergenic |
| GGATTTGTACGGTTGGACGA+TGG | 0.580613 | tig0019730:+12407 | Msa1375580:CDS |
| CGCGGACGACATAGCCGAGA+CGG | 0.583581 | tig0019730:+12551 | Msa1375580:CDS |
| GTATCCTACAAGGATTTGTA+CGG | 0.586222 | tig0019730:+12396 | Msa1375580:CDS |
| CGTCGGCAGGCACTGGATCG+AGG | 0.590698 | tig0019730:+12486 | Msa1375580:CDS |
| GTATGCTGTCATTATCATGC+TGG | 0.590971 | tig0019730:+14606 | Msa1375580:three_prime_UTR |
| TTGGTGGTCTATGAGTCAAA+AGG | 0.591880 | tig0019730:+14879 | Msa1375580:three_prime_UTR |
| CTGCTTGATGGATTGAATCG+AGG | 0.595468 | tig0019730:+13355 | Msa1375580:CDS |
| TGGAGAATAAATGCATTCAG+TGG | 0.598543 | tig0019730:-12733 | None:intergenic |
| TATTCTCCAAATGCTTATCG+TGG | 0.598636 | tig0019730:+12747 | Msa1375580:CDS |
| GGATAAGACGTAAGCAAGGA+CGG | 0.599686 | tig0019730:-12238 | None:intergenic |
| GTCGCCATCGGAGCTTCCGG+CGG | 0.601734 | tig0019730:+12204 | Msa1375580:CDS |
| CTTCCTCCTCTCCGTCGACG+AGG | 0.602940 | tig0019730:+12296 | Msa1375580:CDS |
| ATTCCTGAAAGCAGATAAAG+TGG | 0.603419 | tig0019730:+12515 | Msa1375580:CDS |
| AAGAAGGGGTTGGAGATGGG+TGG | 0.606619 | tig0019730:+14441 | Msa1375580:three_prime_UTR |
| CCTACAAGGATTTGTACGGT+TGG | 0.611193 | tig0019730:+12400 | Msa1375580:CDS |
| CGGAGAGGAGGAAGAGATGG+AGG | 0.612018 | tig0019730:-12287 | None:intergenic |
| ACTACCAAAATGCCTGAACA+GGG | 0.612299 | tig0019730:+12934 | Msa1375580:CDS |
| TGAAGAGCGATACTCCGATA+GGG | 0.612895 | tig0019730:+11982 | Msa1375580:five_prime_UTR |
| AAGCAACGAGAATCAATGAC+CGG | 0.613092 | tig0019730:+14521 | Msa1375580:three_prime_UTR |
| CTGTCATTATCATGCTGGAG+AGG | 0.614755 | tig0019730:+14611 | Msa1375580:three_prime_UTR |
| GGAATAGACTAGTTTCACAA+AGG | 0.617909 | tig0019730:+14565 | Msa1375580:three_prime_UTR |
| CCTTCTGTGGAGTATTCCGT+CGG | 0.617984 | tig0019730:+12469 | Msa1375580:CDS |
| AGATACAAATGCAACGAGAG+AGG | 0.629581 | tig0019730:-15194 | None:intergenic |
| CAGCCTCATATGCAGACCCA+GGG | 0.630389 | tig0019730:+12864 | Msa1375580:intron |
| AAGCAGATAAAGTGGTGACT+GGG | 0.631961 | tig0019730:+12523 | Msa1375580:CDS |
| ATCACCTTATAACATGATGT+GGG | 0.635891 | tig0019730:-15024 | None:intergenic |
| GTGAAGAGCGATACTCCGAT+AGG | 0.638136 | tig0019730:+11981 | Msa1375580:five_prime_UTR |
| CCGACGGAATACTCCACAGA+AGG | 0.639941 | tig0019730:-12469 | None:intergenic |
| AAGGAAGAAAATGAAAGCCA+TGG | 0.643913 | tig0019730:+13424 | Msa1375580:CDS |
| GCAGGCACTGGATCGAGGAG+CGG | 0.649461 | tig0019730:+12491 | Msa1375580:CDS |
| TGATGCCCTCGTCGACGGAG+AGG | 0.650221 | tig0019730:-12302 | None:intergenic |
| ATGATGTCGAGAATTGCCCT+GGG | 0.658645 | tig0019730:-12880 | None:intergenic |
| GTTTGGATAAGACGTAAGCA+AGG | 0.664538 | tig0019730:-12242 | None:intergenic |
| CGATGGCGACTCGGTCGCCG+CGG | 0.670605 | tig0019730:-12191 | None:intergenic |
| TCATGAAGACATGATAATGG+AGG | 0.674615 | tig0019730:+14464 | Msa1375580:three_prime_UTR |
| TCTCGACATCATCAAATCAG+GGG | 0.678875 | tig0019730:+12891 | Msa1375580:CDS |
| TGATGGATACATGAAAGAAG+GGG | 0.681537 | tig0019730:+14427 | Msa1375580:three_prime_UTR |
| AGCATTGAGAGCAAACAATG+TGG | 0.682742 | tig0019730:+13454 | Msa1375580:CDS |
| TATAACCGCCTCTTCAACCG+CGG | 0.685462 | tig0019730:+12174 | Msa1375580:CDS |
| GGAGGCCGTAATCGTGAACG+CGG | 0.731405 | tig0019730:-12269 | None:intergenic |
| CAGGGAATGTGTGAACGCTG+TGG | 0.737088 | tig0019730:+12952 | Msa1375580:CDS |
| CGGTTTCAAGAGAATCGTCG+CGG | 0.750921 | tig0019730:-12332 | None:intergenic |
| AGTGGTGACTGGGCACAACG+CGG | 0.767399 | tig0019730:+12533 | Msa1375580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTTCAATATTTAAATTATT+TGG | - | tig0019730:14279-14298 | None:intergenic | 10.0% |
| !!! | TGATATTATTATTTGTTTTT+AGG | + | tig0019730:15102-15121 | Msa1375580:three_prime_UTR | 10.0% |
| !!! | GATATTATTATTTGTTTTTA+GGG | + | tig0019730:15103-15122 | Msa1375580:three_prime_UTR | 10.0% |
| !!! | TAATATGAAACAAAGTTTTA+GGG | - | tig0019730:13014-13033 | None:intergenic | 15.0% |
| !!! | ATAATATGAAACAAAGTTTT+AGG | - | tig0019730:13015-13034 | None:intergenic | 15.0% |
| !! | CAAAAGAAAACAAAAAATAA+AGG | - | tig0019730:13182-13201 | None:intergenic | 15.0% |
| !!! | ATATTTTTATAGCTAGAATT+TGG | + | tig0019730:14544-14563 | Msa1375580:three_prime_UTR | 15.0% |
| !! | TAAAATTGAAATTATGAAGT+TGG | + | tig0019730:14947-14966 | Msa1375580:three_prime_UTR | 15.0% |
| !!! | AATATTGAGTTGAAAATCAA+AGG | - | tig0019730:13126-13145 | None:intergenic | 20.0% |
| !! | TGAAGAATCTATGAATAATT+TGG | + | tig0019730:13909-13928 | Msa1375580:intron | 20.0% |
| !!! | TTTTTTTGTTTGTCAAGATT+TGG | + | tig0019730:13945-13964 | Msa1375580:intron | 20.0% |
| !! | GGAATTCTAAATTAAAAAAC+TGG | + | tig0019730:14216-14235 | Msa1375580:intron | 20.0% |
| !!! | ATTCTAGCTATAAAAATATC+CGG | - | tig0019730:14543-14562 | None:intergenic | 20.0% |
| !! | TCCTTAAACTTAAAGTAAAA+GGG | - | tig0019730:14769-14788 | None:intergenic | 20.0% |
| !! | ATCCTTAAACTTAAAGTAAA+AGG | - | tig0019730:14770-14789 | None:intergenic | 20.0% |
| !! | TTTTCATAAGTGTACTTGAA+AGG | - | tig0019730:12669-12688 | None:intergenic | 25.0% |
| !! | TTTCAAGTACACTTATGAAA+AGG | + | tig0019730:12668-12687 | Msa1375580:CDS | 25.0% |
| ! | AATTACAATACAACCAATTG+AGG | - | tig0019730:13205-13224 | None:intergenic | 25.0% |
| ! | AATTGGTTGTATTGTAATTC+AGG | + | tig0019730:13206-13225 | Msa1375580:intron | 25.0% |
| !!! | TACTTTTTCATGTACAGAAA+TGG | + | tig0019730:13317-13336 | Msa1375580:intron | 25.0% |
| ! | CTAGAATATAGTTGCATTAT+TGG | + | tig0019730:13654-13673 | Msa1375580:intron | 25.0% |
| !!! | CTAAAGTGTTTTCTAATCTA+GGG | + | tig0019730:14396-14415 | Msa1375580:intron | 25.0% |
| !! | AAGTTTGGAGATTATGTTTT+CGG | + | tig0019730:14697-14716 | Msa1375580:three_prime_UTR | 25.0% |
| !!! | TCCCTTTTACTTTAAGTTTA+AGG | + | tig0019730:14765-14784 | Msa1375580:three_prime_UTR | 25.0% |
| ! | GGTATTCAATTCAGTAATTA+TGG | + | tig0019730:14900-14919 | Msa1375580:three_prime_UTR | 25.0% |
| CTCAATCTGATTTCTATGAA+CGG | - | tig0019730:12355-12374 | None:intergenic | 30.0% | |
| CATAGAAATCAGATTGAGTA+TGG | + | tig0019730:12357-12376 | Msa1375580:CDS | 30.0% | |
| ! | GTGCTGTTAAACATATTAAG+AGG | + | tig0019730:12573-12592 | Msa1375580:CDS | 30.0% |
| !!! | ATGAAACAAAGTTTTAGGGA+TGG | - | tig0019730:13010-13029 | None:intergenic | 30.0% |
| ! | TTGTTTTCTTTTGCCTCAAT+TGG | + | tig0019730:13189-13208 | Msa1375580:intron | 30.0% |
| ! | AGACTTCTGATTTTCTATGT+AGG | + | tig0019730:13483-13502 | Msa1375580:exon | 30.0% |
| AATATACATCAGTGAGATTC+AGG | + | tig0019730:13538-13557 | Msa1375580:intron | 30.0% | |
| AATTCGTCAATACAACTCAA+CGG | + | tig0019730:13777-13796 | Msa1375580:intron | 30.0% | |
| GTCAATCAGTTATATATGCT+TGG | + | tig0019730:13992-14011 | Msa1375580:intron | 30.0% | |
| AACTGGAAGAAAAAAAAAGC+AGG | + | tig0019730:14233-14252 | Msa1375580:intron | 30.0% | |
| ACTGGAAGAAAAAAAAAGCA+GGG | + | tig0019730:14234-14253 | Msa1375580:intron | 30.0% | |
| AAGAAAAAAAAAGCAGGGAA+GGG | + | tig0019730:14239-14258 | Msa1375580:intron | 30.0% | |
| AGAAAACACTTTAGCTAGTT+AGG | - | tig0019730:14390-14409 | None:intergenic | 30.0% | |
| !! | GCTAAAGTGTTTTCTAATCT+AGG | + | tig0019730:14395-14414 | Msa1375580:intron | 30.0% |
| TTCTTTCATGTATCCATCAT+AGG | - | tig0019730:14426-14445 | None:intergenic | 30.0% | |
| !! | TATGATGGATACATGAAAGA+AGG | + | tig0019730:14425-14444 | Msa1375580:three_prime_UTR | 30.0% |
| !! | ATGATGGATACATGAAAGAA+GGG | + | tig0019730:14426-14445 | Msa1375580:three_prime_UTR | 30.0% |
| ! | CAGTTTTGCACAATTAATAC+AGG | + | tig0019730:14740-14759 | Msa1375580:three_prime_UTR | 30.0% |
| TGAAATTATGAAGTTGGCTA+AGG | + | tig0019730:14953-14972 | Msa1375580:three_prime_UTR | 30.0% | |
| GAAATTATGAAGTTGGCTAA+GGG | + | tig0019730:14954-14973 | Msa1375580:three_prime_UTR | 30.0% | |
| TAATCCCACATCATGTTATA+AGG | + | tig0019730:15020-15039 | Msa1375580:three_prime_UTR | 30.0% | |
| ATCACCTTATAACATGATGT+GGG | - | tig0019730:15027-15046 | None:intergenic | 30.0% | |
| !! | TATAAGGTGATCGATTTTTG+TGG | + | tig0019730:15036-15055 | Msa1375580:three_prime_UTR | 30.0% |
| !!! | TTTTTAGGGTTCTCTGTTTT+TGG | + | tig0019730:15117-15136 | Msa1375580:three_prime_UTR | 30.0% |
| !!! | TTTTAGGGTTCTCTGTTTTT+GGG | + | tig0019730:15118-15137 | Msa1375580:three_prime_UTR | 30.0% |
| !!! | TATTGTCTCCCCAATTTTTT+TGG | + | tig0019730:15160-15179 | Msa1375580:three_prime_UTR | 30.0% |
| !!! | ATTGTCTCCCCAATTTTTTT+GGG | + | tig0019730:15161-15180 | Msa1375580:three_prime_UTR | 30.0% |
| AAACAGACCCCAAAAAAATT+GGG | - | tig0019730:15172-15191 | None:intergenic | 30.0% | |
| TTCTTCTACCTAAACCCTAT+CGG | - | tig0019730:11999-12018 | None:intergenic | 35.0% | |
| AAGAAGAGAAGAGAAGAGAA+TGG | + | tig0019730:12014-12033 | Msa1375580:exon | 35.0% | |
| ! | CAAATCTGTTGAAGGGTTTT+AGG | - | tig0019730:12102-12121 | None:intergenic | 35.0% |
| TTCTCTGCAAATCTGTTGAA+GGG | - | tig0019730:12109-12128 | None:intergenic | 35.0% | |
| ATTCTCTGCAAATCTGTTGA+AGG | - | tig0019730:12110-12129 | None:intergenic | 35.0% | |
| GTATCCTACAAGGATTTGTA+CGG | + | tig0019730:12396-12415 | Msa1375580:CDS | 35.0% | |
| ATTCCTGAAAGCAGATAAAG+TGG | + | tig0019730:12515-12534 | Msa1375580:CDS | 35.0% | |
| AGATGCAGTTCAATCATAAC+AGG | + | tig0019730:12615-12634 | Msa1375580:CDS | 35.0% | |
| TCAATCATAACAGGTGAAGA+TGG | + | tig0019730:12624-12643 | Msa1375580:CDS | 35.0% | |
| ACTTGAAAGGTTTGCATCTA+GGG | - | tig0019730:12656-12675 | None:intergenic | 35.0% | |
| TACTTGAAAGGTTTGCATCT+AGG | - | tig0019730:12657-12676 | None:intergenic | 35.0% | |
| TGGAGAATAAATGCATTCAG+TGG | - | tig0019730:12736-12755 | None:intergenic | 35.0% | |
| TATTCTCCAAATGCTTATCG+TGG | + | tig0019730:12747-12766 | Msa1375580:CDS | 35.0% | |
| ATTCTCGACATCATCAAATC+AGG | + | tig0019730:12889-12908 | Msa1375580:CDS | 35.0% | |
| TTCTCGACATCATCAAATCA+GGG | + | tig0019730:12890-12909 | Msa1375580:CDS | 35.0% | |
| !! | CTGTGGTTATATTTCTAGTC+AGG | + | tig0019730:12969-12988 | Msa1375580:CDS | 35.0% |
| GTTGGGAATTGTTTATACAG+TGG | - | tig0019730:13087-13106 | None:intergenic | 35.0% | |
| AAACAATTCCCAACATAAGC+AGG | + | tig0019730:13093-13112 | Msa1375580:intron | 35.0% | |
| GAACCAAGAGTGAAATCAAA+GGG | - | tig0019730:13269-13288 | None:intergenic | 35.0% | |
| TGAACCAAGAGTGAAATCAA+AGG | - | tig0019730:13270-13289 | None:intergenic | 35.0% | |
| AATCGAGGTTTGCCTAAATT+GGG | + | tig0019730:13370-13389 | Msa1375580:CDS | 35.0% | |
| ! | ATTTTCTTCCTTGCAACCAA+TGG | - | tig0019730:13416-13435 | None:intergenic | 35.0% |
| AAGGAAGAAAATGAAAGCCA+TGG | + | tig0019730:13424-13443 | Msa1375580:CDS | 35.0% | |
| GTAGGCATCATATCATATGA+AGG | + | tig0019730:13501-13520 | Msa1375580:three_prime_UTR | 35.0% | |
| TGACGAATTGTGAGTATAAC+AGG | - | tig0019730:13766-13785 | None:intergenic | 35.0% | |
| AACTCAAGATGTATGTCTGA+AGG | - | tig0019730:13842-13861 | None:intergenic | 35.0% | |
| AGCTATCAAGACTTTGTGAT+GGG | + | tig0019730:14081-14100 | Msa1375580:intron | 35.0% | |
| ! | TTTGTGATGGGATACCAATA+AGG | + | tig0019730:14093-14112 | Msa1375580:intron | 35.0% |
| ! | TTGTGATGGGATACCAATAA+GGG | + | tig0019730:14094-14113 | Msa1375580:intron | 35.0% |
| AGCTTAACATTCACCCTTAT+TGG | - | tig0019730:14110-14129 | None:intergenic | 35.0% | |
| GGGTTAATTGATTAATTCCC+CGG | + | tig0019730:14181-14200 | Msa1375580:intron | 35.0% | |
| GAAGAAAAAAAAAGCAGGGA+AGG | + | tig0019730:14238-14257 | Msa1375580:intron | 35.0% | |
| !! | TCTCGTCATTTTGATAGAGT+TGG | - | tig0019730:14320-14339 | None:intergenic | 35.0% |
| CTGTGATGTGTTCAACTAAT+AGG | - | tig0019730:14362-14381 | None:intergenic | 35.0% | |
| ! | TGATGGATACATGAAAGAAG+GGG | + | tig0019730:14427-14446 | Msa1375580:three_prime_UTR | 35.0% |
| TGGTCATGAAGACATGATAA+TGG | + | tig0019730:14461-14480 | Msa1375580:three_prime_UTR | 35.0% | |
| !! | TCATGAAGACATGATAATGG+AGG | + | tig0019730:14464-14483 | Msa1375580:three_prime_UTR | 35.0% |
| !! | GGAATAGACTAGTTTCACAA+AGG | + | tig0019730:14565-14584 | Msa1375580:three_prime_UTR | 35.0% |
| TTTCACAAAGGAGAACCTAA+TGG | + | tig0019730:14577-14596 | Msa1375580:three_prime_UTR | 35.0% | |
| ACAGCATACTTCAATCCATT+AGG | - | tig0019730:14595-14614 | None:intergenic | 35.0% | |
| GTTCTCTTTATGCTCAAGTT+TGG | + | tig0019730:14682-14701 | Msa1375580:three_prime_UTR | 35.0% | |
| ! | TTTGGAGATTATGTTTTCGG+TGG | + | tig0019730:14700-14719 | Msa1375580:three_prime_UTR | 35.0% |
| ! | TTGGAGATTATGTTTTCGGT+GGG | + | tig0019730:14701-14720 | Msa1375580:three_prime_UTR | 35.0% |
| CTTGCAGTTTGCAATTATCT+AGG | + | tig0019730:14852-14871 | Msa1375580:three_prime_UTR | 35.0% | |
| TTGCAATTATCTAGGCTACT+TGG | + | tig0019730:14860-14879 | Msa1375580:three_prime_UTR | 35.0% | |
| ! | GGATGTGCAGAAGATTTTTA+AGG | + | tig0019730:14921-14940 | Msa1375580:three_prime_UTR | 35.0% |
| GATCACCTTATAACATGATG+TGG | - | tig0019730:15028-15047 | None:intergenic | 35.0% | |
| !! | ATTTTTGTGGCAAGTTGGAA+GGG | + | tig0019730:15049-15068 | Msa1375580:three_prime_UTR | 35.0% |
| !!! | TTTAGGGTTCTCTGTTTTTG+GGG | + | tig0019730:15119-15138 | Msa1375580:three_prime_UTR | 35.0% |
| !!! | TTGTCTCCCCAATTTTTTTG+GGG | + | tig0019730:15162-15181 | Msa1375580:three_prime_UTR | 35.0% |
| AACAGACCCCAAAAAAATTG+GGG | - | tig0019730:15171-15190 | None:intergenic | 35.0% | |
| CAAACAGACCCCAAAAAAAT+TGG | - | tig0019730:15173-15192 | None:intergenic | 35.0% | |
| !!! | CAATTTTTTTGGGGTCTGTT+TGG | + | tig0019730:15171-15190 | Msa1375580:three_prime_UTR | 35.0% |
| GCAGAAGACGTGTTAATATT+AGG | - | tig0019730:15226-15245 | None:intergenic | 35.0% | |
| AGAGAAGAGAAGAGAATGGA+AGG | + | tig0019730:12018-12037 | Msa1375580:exon | 40.0% | |
| GAGAAGAGAAGAGAATGGAA+GGG | + | tig0019730:12019-12038 | Msa1375580:exon | 40.0% | |
| GTTTGGATAAGACGTAAGCA+AGG | - | tig0019730:12245-12264 | None:intergenic | 40.0% | |
| TTGTAGGATACGACTTTGAG+AGG | - | tig0019730:12387-12406 | None:intergenic | 40.0% | |
| TCTCAAAGTCGTATCCTACA+AGG | + | tig0019730:12386-12405 | Msa1375580:CDS | 40.0% | |
| AAGAACAATTGCACCTTCTG+TGG | + | tig0019730:12456-12475 | Msa1375580:CDS | 40.0% | |
| TCACCACTTTATCTGCTTTC+AGG | - | tig0019730:12521-12540 | None:intergenic | 40.0% | |
| AAAGCAGATAAAGTGGTGAC+TGG | + | tig0019730:12522-12541 | Msa1375580:CDS | 40.0% | |
| AAGCAGATAAAGTGGTGACT+GGG | + | tig0019730:12523-12542 | Msa1375580:CDS | 40.0% | |
| TATGTTTAACAGCACCGTCT+CGG | - | tig0019730:12568-12587 | None:intergenic | 40.0% | |
| AAAGGTTTGCATCTAGGGAT+GGG | - | tig0019730:12651-12670 | None:intergenic | 40.0% | |
| GCAAAACCACGATAAGCATT+TGG | - | tig0019730:12756-12775 | None:intergenic | 40.0% | |
| ! | TTTTGCTCGTGAGTTCATCA+AGG | + | tig0019730:12770-12789 | Msa1375580:CDS | 40.0% |
| TCGTGAGTTCATCAAGGATT+TGG | + | tig0019730:12776-12795 | Msa1375580:CDS | 40.0% | |
| TCAAGGATTTGGAGAGAATC+AGG | + | tig0019730:12787-12806 | Msa1375580:CDS | 40.0% | |
| TCTCGACATCATCAAATCAG+GGG | + | tig0019730:12891-12910 | Msa1375580:CDS | 40.0% | |
| ACTACCAAAATGCCTGAACA+GGG | + | tig0019730:12934-12953 | Msa1375580:CDS | 40.0% | |
| GACATAAGCCTGCTTATGTT+GGG | - | tig0019730:13104-13123 | None:intergenic | 40.0% | |
| ! | TCTCCCTTTGATTTCACTCT+TGG | + | tig0019730:13263-13282 | Msa1375580:intron | 40.0% |
| AAAGCTTGTGTTCTGCTTGA+TGG | + | tig0019730:13343-13362 | Msa1375580:CDS | 40.0% | |
| GAATCGAGGTTTGCCTAAAT+TGG | + | tig0019730:13369-13388 | Msa1375580:CDS | 40.0% | |
| GGTTTGCCTAAATTGGGAAT+TGG | + | tig0019730:13376-13395 | Msa1375580:CDS | 40.0% | |
| TGCCTAAATTGGGAATTGGA+CGG | + | tig0019730:13380-13399 | Msa1375580:CDS | 40.0% | |
| TCTCAATGCTCTTTGTTCCA+TGG | - | tig0019730:13444-13463 | None:intergenic | 40.0% | |
| ! | AGCATTGAGAGCAAACAATG+TGG | + | tig0019730:13454-13473 | Msa1375580:CDS | 40.0% |
| ATATCCAAGCCAATGCTTGA+GGG | - | tig0019730:13819-13838 | None:intergenic | 40.0% | |
| TTCCGTTCTTCTCTAGCAAT+GGG | + | tig0019730:13880-13899 | Msa1375580:intron | 40.0% | |
| AACCCATTGCTAGAGAAGAA+CGG | - | tig0019730:13885-13904 | None:intergenic | 40.0% | |
| GAGCTATCAAGACTTTGTGA+TGG | + | tig0019730:14080-14099 | Msa1375580:intron | 40.0% | |
| ! | ACTGTGTTATTATTCGCAGC+AGG | + | tig0019730:14157-14176 | Msa1375580:intron | 40.0% |
| ! | CTGTGTTATTATTCGCAGCA+GGG | + | tig0019730:14158-14177 | Msa1375580:intron | 40.0% |
| ! | TGTGTTATTATTCGCAGCAG+GGG | + | tig0019730:14159-14178 | Msa1375580:intron | 40.0% |
| ! | AATTCCTCACATTGATTGCC+GGG | - | tig0019730:14202-14221 | None:intergenic | 40.0% |
| ! | GAATTCCTCACATTGATTGC+CGG | - | tig0019730:14203-14222 | None:intergenic | 40.0% |
| ATAGGAAGAGATAGCAGAGA+AGG | - | tig0019730:14344-14363 | None:intergenic | 40.0% | |
| ! | AATCTAGGGCTTACCTATGA+TGG | + | tig0019730:14410-14429 | Msa1375580:intron | 40.0% |
| AAGCAACGAGAATCAATGAC+CGG | + | tig0019730:14521-14540 | Msa1375580:three_prime_UTR | 40.0% | |
| GTATGCTGTCATTATCATGC+TGG | + | tig0019730:14606-14625 | Msa1375580:three_prime_UTR | 40.0% | |
| CAATTATCTAGGCTACTTGG+TGG | + | tig0019730:14863-14882 | Msa1375580:three_prime_UTR | 40.0% | |
| ! | TTGGTGGTCTATGAGTCAAA+AGG | + | tig0019730:14879-14898 | Msa1375580:three_prime_UTR | 40.0% |
| AGTTGGCTAAGGGAAAGATT+AGG | + | tig0019730:14964-14983 | Msa1375580:three_prime_UTR | 40.0% | |
| !! | GATCGATTTTTGTGGCAAGT+TGG | + | tig0019730:15044-15063 | Msa1375580:three_prime_UTR | 40.0% |
| !! | GATTTTTGTGGCAAGTTGGA+AGG | + | tig0019730:15048-15067 | Msa1375580:three_prime_UTR | 40.0% |
| !!! | TCTGTTTTTGGGGATGTTGT+GGG | + | tig0019730:15129-15148 | Msa1375580:three_prime_UTR | 40.0% |
| AGATACAAATGCAACGAGAG+AGG | - | tig0019730:15197-15216 | None:intergenic | 40.0% | |
| TGAAGAGCGATACTCCGATA+GGG | + | tig0019730:11982-12001 | Msa1375580:five_prime_UTR | 45.0% | |
| GGATAAGACGTAAGCAAGGA+CGG | - | tig0019730:12241-12260 | None:intergenic | 45.0% | |
| CCAACCGTACAAATCCTTGT+AGG | - | tig0019730:12403-12422 | None:intergenic | 45.0% | |
| CCTACAAGGATTTGTACGGT+TGG | + | tig0019730:12400-12419 | Msa1375580:CDS | 45.0% | |
| GACGAGATCGTGAAACTGAT+CGG | + | tig0019730:12429-12448 | Msa1375580:CDS | 45.0% | |
| GAAAGGTTTGCATCTAGGGA+TGG | - | tig0019730:12652-12671 | None:intergenic | 45.0% | |
| ATGAGGCTGGCAGTAAGTAA+TGG | - | tig0019730:12853-12872 | None:intergenic | 45.0% | |
| ATGATGTCGAGAATTGCCCT+GGG | - | tig0019730:12883-12902 | None:intergenic | 45.0% | |
| !! | CTGTTCAGGCATTTTGGTAG+TGG | - | tig0019730:12935-12954 | None:intergenic | 45.0% |
| CACTACCAAAATGCCTGAAC+AGG | + | tig0019730:12933-12952 | Msa1375580:CDS | 45.0% | |
| ! | CATTCCCTGTTCAGGCATTT+TGG | - | tig0019730:12941-12960 | None:intergenic | 45.0% |
| GGACATAAGCCTGCTTATGT+TGG | - | tig0019730:13105-13124 | None:intergenic | 45.0% | |
| !! | CTGCTTGATGGATTGAATCG+AGG | + | tig0019730:13355-13374 | Msa1375580:CDS | 45.0% |
| CTCCGTCCAATTCCCAATTT+AGG | - | tig0019730:13385-13404 | None:intergenic | 45.0% | |
| AATTGGGAATTGGACGGAGT+CGG | + | tig0019730:13386-13405 | Msa1375580:CDS | 45.0% | |
| GTGAGATTCAGGTCAGTTAG+TGG | + | tig0019730:13549-13568 | Msa1375580:intron | 45.0% | |
| ACAACTCAACGGTCTACTGT+AGG | + | tig0019730:13788-13807 | Msa1375580:intron | 45.0% | |
| TAGGATACACCCTCAAGCAT+TGG | + | tig0019730:13807-13826 | Msa1375580:intron | 45.0% | |
| GATATCCAAGCCAATGCTTG+AGG | - | tig0019730:13820-13839 | None:intergenic | 45.0% | |
| CTTCCGTTCTTCTCTAGCAA+TGG | + | tig0019730:13879-13898 | Msa1375580:intron | 45.0% | |
| ! | GTGTTATTATTCGCAGCAGG+GGG | + | tig0019730:14160-14179 | Msa1375580:intron | 45.0% |
| TGTTATTATTCGCAGCAGGG+GGG | + | tig0019730:14161-14180 | Msa1375580:intron | 45.0% | |
| ! | ATTCCTCACATTGATTGCCG+GGG | - | tig0019730:14201-14220 | None:intergenic | 45.0% |
| GGATACATGAAAGAAGGGGT+TGG | + | tig0019730:14431-14450 | Msa1375580:three_prime_UTR | 45.0% | |
| ATGAAAGAAGGGGTTGGAGA+TGG | + | tig0019730:14437-14456 | Msa1375580:three_prime_UTR | 45.0% | |
| TGAAAGAAGGGGTTGGAGAT+GGG | + | tig0019730:14438-14457 | Msa1375580:three_prime_UTR | 45.0% | |
| CTGTCATTATCATGCTGGAG+AGG | + | tig0019730:14611-14630 | Msa1375580:three_prime_UTR | 45.0% | |
| TTATCATGCTGGAGAGGTTC+TGG | + | tig0019730:14617-14636 | Msa1375580:three_prime_UTR | 45.0% | |
| TATCATGCTGGAGAGGTTCT+GGG | + | tig0019730:14618-14637 | Msa1375580:three_prime_UTR | 45.0% | |
| TGTCAGGGAGTAGAGTCTTT+CGG | + | tig0019730:14641-14660 | Msa1375580:three_prime_UTR | 45.0% | |
| ! | GAGATTATGTTTTCGGTGGG+TGG | + | tig0019730:14704-14723 | Msa1375580:three_prime_UTR | 45.0% |
| ! | TTATGTTTTCGGTGGGTGGT+TGG | + | tig0019730:14708-14727 | Msa1375580:three_prime_UTR | 45.0% |
| ! | TATGTTTTCGGTGGGTGGTT+GGG | + | tig0019730:14709-14728 | Msa1375580:three_prime_UTR | 45.0% |
| TGGCTAAGGGAAAGATTAGG+TGG | + | tig0019730:14967-14986 | Msa1375580:three_prime_UTR | 45.0% | |
| !!! | CTCTGTTTTTGGGGATGTTG+TGG | + | tig0019730:15128-15147 | Msa1375580:three_prime_UTR | 45.0% |
| GTGAAGAGCGATACTCCGAT+AGG | + | tig0019730:11981-12000 | Msa1375580:five_prime_UTR | 50.0% | |
| GCGATACTCCGATAGGGTTT+AGG | + | tig0019730:11988-12007 | Msa1375580:five_prime_UTR | 50.0% | |
| TATAACCGCCTCTTCAACCG+CGG | + | tig0019730:12174-12193 | Msa1375580:CDS | 50.0% | |
| ATCGTGAACGCGGTTGAGTT+TGG | - | tig0019730:12262-12281 | None:intergenic | 50.0% | |
| CTCAACCGCGTTCACGATTA+CGG | + | tig0019730:12264-12283 | Msa1375580:CDS | 50.0% | |
| CGGTTTCAAGAGAATCGTCG+CGG | - | tig0019730:12335-12354 | None:intergenic | 50.0% | |
| GGATTTGTACGGTTGGACGA+TGG | + | tig0019730:12407-12426 | Msa1375580:CDS | 50.0% | |
| ! | CCTTCTGTGGAGTATTCCGT+CGG | + | tig0019730:12469-12488 | Msa1375580:CDS | 50.0% |
| GATGATGTCGAGAATTGCCC+TGG | - | tig0019730:12884-12903 | None:intergenic | 50.0% | |
| CGTTCACACATTCCCTGTTC+AGG | - | tig0019730:12949-12968 | None:intergenic | 50.0% | |
| ATTGGGAATTGGACGGAGTC+GGG | + | tig0019730:13387-13406 | Msa1375580:CDS | 50.0% | |
| !! | TACACCCTCAAGCATTGGCT+TGG | + | tig0019730:13812-13831 | Msa1375580:intron | 50.0% |
| ATTCCCCGGCAATCAATGTG+AGG | + | tig0019730:14195-14214 | Msa1375580:intron | 50.0% | |
| !! | GTTTTTGGGGATGTTGTGGG+TGG | + | tig0019730:15132-15151 | Msa1375580:three_prime_UTR | 50.0% |
| AAGAGAATCGTCGCGGTAGC+CGG | - | tig0019730:12328-12347 | None:intergenic | 55.0% | |
| CCGACGGAATACTCCACAGA+AGG | - | tig0019730:12472-12491 | None:intergenic | 55.0% | |
| CAGCCTCATATGCAGACCCA+GGG | + | tig0019730:12864-12883 | Msa1375580:intron | 55.0% | |
| TTGCCCTGGGTCTGCATATG+AGG | - | tig0019730:12870-12889 | None:intergenic | 55.0% | |
| CAGGGAATGTGTGAACGCTG+TGG | + | tig0019730:12952-12971 | Msa1375580:CDS | 55.0% | |
| ! | TCGGGTTGCCATTGGTTGCA+AGG | + | tig0019730:13405-13424 | Msa1375580:CDS | 55.0% |
| AAGAAGGGGTTGGAGATGGG+TGG | + | tig0019730:14441-14460 | Msa1375580:three_prime_UTR | 55.0% | |
| !! | TGGAGAGGTTCTGGGTGTCA+GGG | + | tig0019730:14626-14645 | Msa1375580:three_prime_UTR | 55.0% |
| GACGGTTGAGTCTTTGCCGC+CGG | - | tig0019730:12223-12242 | None:intergenic | 60.0% | |
| GGAGGCCGTAATCGTGAACG+CGG | - | tig0019730:12272-12291 | None:intergenic | 60.0% | |
| CGGAGAGGAGGAAGAGATGG+AGG | - | tig0019730:12290-12309 | None:intergenic | 60.0% | |
| CGACGGAGAGGAGGAAGAGA+TGG | - | tig0019730:12293-12312 | None:intergenic | 60.0% | |
| TTCCTCCTCTCCGTCGACGA+GGG | + | tig0019730:12297-12316 | Msa1375580:CDS | 60.0% | |
| ! | CTGTGGAGTATTCCGTCGGC+AGG | + | tig0019730:12473-12492 | Msa1375580:CDS | 60.0% |
| AGTATTCCGTCGGCAGGCAC+TGG | + | tig0019730:12479-12498 | Msa1375580:CDS | 60.0% | |
| AGTGGTGACTGGGCACAACG+CGG | + | tig0019730:12533-12552 | Msa1375580:CDS | 60.0% | |
| CCTGGGTCTGCATATGAGGC+TGG | - | tig0019730:12866-12885 | None:intergenic | 60.0% | |
| CCAGCCTCATATGCAGACCC+AGG | + | tig0019730:12863-12882 | Msa1375580:intron | 60.0% | |
| !! | CTGGAGAGGTTCTGGGTGTC+AGG | + | tig0019730:14625-14644 | Msa1375580:three_prime_UTR | 60.0% |
| CGGAAGCTCCGATGGCGACT+CGG | - | tig0019730:12203-12222 | None:intergenic | 65.0% | |
| CGAGTCGCCATCGGAGCTTC+CGG | + | tig0019730:12201-12220 | Msa1375580:CDS | 65.0% | |
| TTTGCCGCCGGAAGCTCCGA+TGG | - | tig0019730:12211-12230 | None:intergenic | 65.0% | |
| CTTCCTCCTCTCCGTCGACG+AGG | + | tig0019730:12296-12315 | Msa1375580:CDS | 65.0% | |
| TGATGCCCTCGTCGACGGAG+AGG | - | tig0019730:12305-12324 | None:intergenic | 65.0% | |
| !! | TCCGTCGACGAGGGCATCAC+CGG | + | tig0019730:12306-12325 | Msa1375580:CDS | 65.0% |
| CTCGATCCAGTGCCTGCCGA+CGG | - | tig0019730:12488-12507 | None:intergenic | 65.0% | |
| !! | GCAGGCACTGGATCGAGGAG+CGG | + | tig0019730:12491-12510 | Msa1375580:CDS | 65.0% |
| CGCGGACGACATAGCCGAGA+CGG | + | tig0019730:12551-12570 | Msa1375580:CDS | 65.0% | |
| ! | GGACGGAGTCGGGTTGCCAT+TGG | + | tig0019730:13397-13416 | Msa1375580:CDS | 65.0% |
| GGTCGCCGCGGTTGAAGAGG+CGG | - | tig0019730:12182-12201 | None:intergenic | 70.0% | |
| CTCGGTCGCCGCGGTTGAAG+AGG | - | tig0019730:12185-12204 | None:intergenic | 70.0% | |
| GTCGCCATCGGAGCTTCCGG+CGG | + | tig0019730:12204-12223 | Msa1375580:CDS | 70.0% | |
| TGCCCTCGTCGACGGAGAGG+AGG | - | tig0019730:12302-12321 | None:intergenic | 70.0% | |
| GCCGGTGATGCCCTCGTCGA+CGG | - | tig0019730:12310-12329 | None:intergenic | 70.0% | |
| !! | CGTCGGCAGGCACTGGATCG+AGG | + | tig0019730:12486-12505 | Msa1375580:CDS | 70.0% |
| !! | CGATGGCGACTCGGTCGCCG+CGG | - | tig0019730:12194-12213 | None:intergenic | 75.0% |
| CGCGGCGACCGAGTCGCCAT+CGG | + | tig0019730:12192-12211 | Msa1375580:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019730 | gene | 11951 | 15274 | 11951 | ID=Msa1375580;Name=Msa1375580 |
| tig0019730 | mRNA | 11951 | 15274 | 11951 | ID=Msa1375580-mRNA-1;Parent=Msa1375580;Name=Msa1375580-mRNA-1;_AED=0.15;_eAED=0.15;_QI=82|1|1|1|0.66|0.5|4|888|348 |
| tig0019730 | exon | 11951 | 12808 | 11951 | ID=Msa1375580-mRNA-1:exon:4626;Parent=Msa1375580-mRNA-1 |
| tig0019730 | exon | 12879 | 12990 | 12879 | ID=Msa1375580-mRNA-1:exon:4627;Parent=Msa1375580-mRNA-1 |
| tig0019730 | exon | 13334 | 13522 | 13334 | ID=Msa1375580-mRNA-1:exon:4628;Parent=Msa1375580-mRNA-1 |
| tig0019730 | exon | 14417 | 15274 | 14417 | ID=Msa1375580-mRNA-1:exon:4629;Parent=Msa1375580-mRNA-1 |
| tig0019730 | five_prime_UTR | 11951 | 12032 | 11951 | ID=Msa1375580-mRNA-1:five_prime_utr;Parent=Msa1375580-mRNA-1 |
| tig0019730 | CDS | 12033 | 12808 | 12033 | ID=Msa1375580-mRNA-1:cds;Parent=Msa1375580-mRNA-1 |
| tig0019730 | CDS | 12879 | 12990 | 12879 | ID=Msa1375580-mRNA-1:cds;Parent=Msa1375580-mRNA-1 |
| tig0019730 | CDS | 13334 | 13492 | 13334 | ID=Msa1375580-mRNA-1:cds;Parent=Msa1375580-mRNA-1 |
| tig0019730 | three_prime_UTR | 13493 | 13522 | 13493 | ID=Msa1375580-mRNA-1:three_prime_utr;Parent=Msa1375580-mRNA-1 |
| tig0019730 | three_prime_UTR | 14417 | 15274 | 14417 | ID=Msa1375580-mRNA-1:three_prime_utr;Parent=Msa1375580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
