Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004540 | Msa0962240 | 0.824335 | 8.535116e-54 | -8.615850e-47 |
| Msa0029260 | Msa0962240 | 0.807707 | 4.432477e-50 | -8.615850e-47 |
| Msa0033880 | Msa0962240 | 0.821463 | 3.983712e-53 | -8.615850e-47 |
| Msa0055100 | Msa0962240 | 0.804298 | 2.309698e-49 | -8.615850e-47 |
| Msa0068020 | Msa0962240 | 0.818039 | 2.413660e-52 | -8.615850e-47 |
| Msa0091610 | Msa0962240 | 0.824584 | 7.458395e-54 | -8.615850e-47 |
| Msa0101180 | Msa0962240 | 0.806442 | 8.208496e-50 | -8.615850e-47 |
| Msa0115370 | Msa0962240 | 0.831817 | 1.346515e-55 | -8.615850e-47 |
| Msa0603570 | Msa0962240 | 0.804845 | 1.776564e-49 | -8.615850e-47 |
| Msa0610390 | Msa0962240 | 0.810808 | 9.589430e-51 | -8.615850e-47 |
| Msa0644030 | Msa0962240 | 0.802812 | 4.696943e-49 | -8.615850e-47 |
| Msa0650920 | Msa0962240 | 0.805208 | 1.491321e-49 | -8.615850e-47 |
| Msa0662630 | Msa0962240 | 0.829909 | 3.953115e-55 | -8.615850e-47 |
| Msa0666230 | Msa0962240 | 0.807399 | 5.152254e-50 | -8.615850e-47 |
| Msa0687630 | Msa0962240 | 0.805427 | 1.342268e-49 | -8.615850e-47 |
| Msa0692940 | Msa0962240 | 0.800777 | 1.229314e-48 | -8.615850e-47 |
| Msa0694840 | Msa0962240 | 0.800097 | 1.691269e-48 | -8.615850e-47 |
| Msa0726080 | Msa0962240 | 0.808426 | 3.115456e-50 | -8.615850e-47 |
| Msa0797750 | Msa0962240 | 0.809324 | 2.001413e-50 | -8.615850e-47 |
| Msa0818770 | Msa0962240 | 0.811729 | 6.050653e-51 | -8.615850e-47 |
| Msa0826500 | Msa0962240 | 0.812071 | 5.097258e-51 | -8.615850e-47 |
| Msa0121820 | Msa0962240 | 0.805381 | 1.372021e-49 | -8.615850e-47 |
| Msa0126880 | Msa0962240 | 0.807297 | 5.415837e-50 | -8.615850e-47 |
| Msa0127310 | Msa0962240 | 0.803265 | 3.785710e-49 | -8.615850e-47 |
| Msa0127850 | Msa0962240 | 0.821490 | 3.927976e-53 | -8.615850e-47 |
| Msa0136120 | Msa0962240 | 0.807598 | 4.674051e-50 | -8.615850e-47 |
| Msa0166750 | Msa0962240 | 0.835548 | 1.574015e-56 | -8.615850e-47 |
| Msa0167980 | Msa0962240 | 0.801869 | 7.343963e-49 | -8.615850e-47 |
| Msa0169300 | Msa0962240 | 0.806235 | 9.075639e-50 | -8.615850e-47 |
| Msa0174000 | Msa0962240 | 0.817225 | 3.682939e-52 | -8.615850e-47 |
| Msa0183460 | Msa0962240 | 0.806100 | 9.689560e-50 | -8.615850e-47 |
| Msa0199690 | Msa0962240 | 0.800216 | 1.599222e-48 | -8.615850e-47 |
| Msa0384670 | Msa0962240 | 0.808828 | 2.555890e-50 | -8.615850e-47 |
| Msa0384880 | Msa0962240 | 0.819806 | 9.569141e-53 | -8.615850e-47 |
| Msa0389510 | Msa0962240 | 0.804770 | 1.841332e-49 | -8.615850e-47 |
| Msa0419720 | Msa0962240 | 0.807624 | 4.615159e-50 | -8.615850e-47 |
| Msa0462990 | Msa0962240 | 0.805005 | 1.644899e-49 | -8.615850e-47 |
| Msa0478580 | Msa0962240 | 0.806297 | 8.809094e-50 | -8.615850e-47 |
| Msa0244980 | Msa0962240 | 0.805727 | 1.160985e-49 | -8.615850e-47 |
| Msa0262480 | Msa0962240 | 0.800139 | 1.657634e-48 | -8.615850e-47 |
| Msa0269470 | Msa0962240 | 0.808986 | 2.364806e-50 | -8.615850e-47 |
| Msa0280430 | Msa0962240 | 0.808745 | 2.662857e-50 | -8.615850e-47 |
| Msa0304590 | Msa0962240 | 0.818721 | 1.690590e-52 | -8.615850e-47 |
| Msa0304660 | Msa0962240 | 0.826551 | 2.549667e-54 | -8.615850e-47 |
| Msa0331700 | Msa0962240 | 0.825663 | 4.146805e-54 | -8.615850e-47 |
| Msa0484740 | Msa0962240 | 0.828532 | 8.532032e-55 | -8.615850e-47 |
| Msa0511770 | Msa0962240 | 0.819724 | 9.992279e-53 | -8.615850e-47 |
| Msa0547990 | Msa0962240 | 0.810591 | 1.068055e-50 | -8.615850e-47 |
| Msa0556790 | Msa0962240 | 0.801911 | 7.200742e-49 | -8.615850e-47 |
| Msa0580230 | Msa0962240 | 0.817568 | 3.082589e-52 | -8.615850e-47 |
| Msa0581070 | Msa0962240 | 0.835060 | 2.090587e-56 | -8.615850e-47 |
| Msa0846230 | Msa0962240 | 0.806283 | 8.866991e-50 | -8.615850e-47 |
| Msa0898760 | Msa0962240 | 0.802133 | 6.482245e-49 | -8.615850e-47 |
| Msa0928120 | Msa0962240 | 0.810100 | 1.363048e-50 | -8.615850e-47 |
| Msa0943170 | Msa0962240 | 0.803965 | 2.709374e-49 | -8.615850e-47 |
| Msa0962240 | Msa1025940 | 0.811280 | 7.576214e-51 | -8.615850e-47 |
| Msa0962240 | Msa1073400 | 0.805234 | 1.473293e-49 | -8.615850e-47 |
| Msa0962240 | Msa1083880 | 0.804445 | 2.152803e-49 | -8.615850e-47 |
| Msa0962240 | Msa1123350 | 0.803120 | 4.056782e-49 | -8.615850e-47 |
| Msa0962240 | Msa1131560 | 0.806312 | 8.743015e-50 | -8.615850e-47 |
| Msa0962240 | Msa1165780 | 0.819134 | 1.362240e-52 | -8.615850e-47 |
| Msa0962240 | Msa1166870 | 0.806938 | 6.450417e-50 | -8.615850e-47 |
| Msa0962240 | Msa1184370 | 0.817469 | 3.245782e-52 | -8.615850e-47 |
| Msa0962240 | Msa1201830 | 0.804312 | 2.294292e-49 | -8.615850e-47 |
| Msa0962240 | Msa1202580 | 0.832169 | 1.101935e-55 | -8.615850e-47 |
| Msa0962240 | Msa1206650 | 0.814643 | 1.387807e-51 | -8.615850e-47 |
| Msa0962240 | Msa1211830 | 0.804010 | 2.652695e-49 | -8.615850e-47 |
| Msa0962240 | Msa1227690 | 0.825258 | 5.171663e-54 | -8.615850e-47 |
| Msa0962240 | Msa1270620 | 0.801008 | 1.102810e-48 | -8.615850e-47 |
| Msa0962240 | Msa1294840 | 0.800108 | 1.682307e-48 | -8.615850e-47 |
| Msa0962240 | Msa1296830 | 0.800972 | 1.121297e-48 | -8.615850e-47 |
| Msa0962240 | Msa1303580 | 0.827928 | 1.193297e-54 | -8.615850e-47 |
| Msa0962240 | Msa1310690 | 0.818493 | 1.904791e-52 | -8.615850e-47 |
| Msa0962240 | Msa1362420 | 0.830054 | 3.644916e-55 | -8.615850e-47 |
| Msa0962240 | Msa1442850 | 0.800436 | 1.442387e-48 | -8.615850e-47 |
| Msa0962240 | Msa1459960 | 0.812431 | 4.255286e-51 | -8.615850e-47 |
| Msa0962240 | Msa1465080 | 0.802163 | 6.389924e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 14 sgRNAs with CRISPR-Local
Find 380 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCAATGGAATCTACAAAA+AGG | 0.391170 | 6_3:+85277525 | Msa0962240:CDS |
| GCTTCTGATGACGTCATCTT+CGG | 0.465787 | 6_3:-85277588 | None:intergenic |
| ACTCTTTCATTGATCAGTGG+TGG | 0.511431 | 6_3:-85270290 | None:intergenic |
| TTGATCTATGTAAGTAGAAG+AGG | 0.516294 | 6_3:+85272770 | Msa0962240:CDS |
| GGAAGCGTTCTGAAGACAAA+AGG | 0.529632 | 6_3:+85277563 | Msa0962240:CDS |
| TAGATCAAGCTGTTACAAGA+TGG | 0.552558 | 6_3:-85272755 | None:intergenic |
| ATCAGTGGTGGACCTTCTCT+AGG | 0.554884 | 6_3:-85270278 | None:intergenic |
| TGTAGGAGGGATGCAGTGAG+TGG | 0.574499 | 6_3:+85272725 | Msa0962240:intron |
| AAAAGGAAGCTTGTGTTGCA+AGG | 0.579570 | 6_3:+85277542 | Msa0962240:CDS |
| TGAAGAACAAATGAGAGCAA+TGG | 0.580419 | 6_3:+85277511 | Msa0962240:CDS |
| CTCACTCTTTCATTGATCAG+TGG | 0.595253 | 6_3:-85270293 | None:intergenic |
| GCACATCTCTGTCCTAGAGA+AGG | 0.607548 | 6_3:+85270266 | Msa0962240:CDS |
| CACTGATCAATGAAAGAGTG+AGG | 0.647069 | 6_3:+85270294 | Msa0962240:CDS |
| TCTAGGACAGAGATGTGCCA+TGG | 0.660448 | 6_3:-85270261 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTCACATTAAAATAT+TGG | - | chr6_3:85271110-85271129 | None:intergenic | 10.0% |
| !!! | TATAATATTTTTTTCTTTCT+TGG | + | chr6_3:85271162-85271181 | Msa0962240:intron | 10.0% |
| !! | AATTAAATTAACAATACAAA+GGG | - | chr6_3:85271658-85271677 | None:intergenic | 10.0% |
| !! | TAATTAAATTAACAATACAA+AGG | - | chr6_3:85271659-85271678 | None:intergenic | 10.0% |
| !!! | TTTTGAGTTTAATTAATAAA+GGG | + | chr6_3:85274607-85274626 | Msa0962240:intron | 10.0% |
| !! | AAAAAAAAAAAAAAAAGTCA+TGG | + | chr6_3:85276559-85276578 | Msa0962240:intron | 10.0% |
| !!! | AAACTAAATAAACTTTAAAA+AGG | - | chr6_3:85277016-85277035 | None:intergenic | 10.0% |
| !!! | TTTGCTTATAATTTATTTCT+TGG | + | chr6_3:85271076-85271095 | Msa0962240:intron | 15.0% |
| !! | GAAATTAATTAAATATCATG+AGG | + | chr6_3:85271122-85271141 | Msa0962240:intron | 15.0% |
| !! | TTAATTCACGAAAATATATT+AGG | + | chr6_3:85271838-85271857 | Msa0962240:intron | 15.0% |
| !! | TAATTCACGAAAATATATTA+GGG | + | chr6_3:85271839-85271858 | Msa0962240:intron | 15.0% |
| !!! | AATCTAATGTTATCTTTTAA+TGG | - | chr6_3:85272331-85272350 | None:intergenic | 15.0% |
| !!! | ATAATACACATTTTATAACT+AGG | + | chr6_3:85272958-85272977 | Msa0962240:intron | 15.0% |
| !!! | TAATACACATTTTATAACTA+GGG | + | chr6_3:85272959-85272978 | Msa0962240:intron | 15.0% |
| !! | TTAGATAACATTTGAATTTA+TGG | - | chr6_3:85272989-85273008 | None:intergenic | 15.0% |
| !! | ATAAATTCAAATGTTATCTA+AGG | + | chr6_3:85272988-85273007 | Msa0962240:intron | 15.0% |
| !! | TTATTATTTGAATTGAATGA+AGG | + | chr6_3:85273252-85273271 | Msa0962240:intron | 15.0% |
| !! | AAAATCAATTTCTCATAATA+TGG | - | chr6_3:85273450-85273469 | None:intergenic | 15.0% |
| !!! | GTTTTGAGTTTAATTAATAA+AGG | + | chr6_3:85274606-85274625 | Msa0962240:intron | 15.0% |
| !!! | ATTTTTATCTGCTTAAAATT+TGG | + | chr6_3:85274840-85274859 | Msa0962240:intron | 15.0% |
| !! | AAATTTGAATTCAAAAAAGT+AGG | - | chr6_3:85274887-85274906 | None:intergenic | 15.0% |
| !!! | CAAAGTAATTTTACTTTTAA+TGG | - | chr6_3:85275079-85275098 | None:intergenic | 15.0% |
| !!! | TGTTGTAAACTTTTTATATT+TGG | - | chr6_3:85276182-85276201 | None:intergenic | 15.0% |
| !!! | TTTTTGAAGAAAGTAAATTT+TGG | + | chr6_3:85276313-85276332 | Msa0962240:intron | 15.0% |
| !!! | TTTTGAAGAAAGTAAATTTT+GGG | + | chr6_3:85276314-85276333 | Msa0962240:intron | 15.0% |
| !!! | GAAACAAAAATTTGAATTTT+GGG | - | chr6_3:85276386-85276405 | None:intergenic | 15.0% |
| !!! | ATAATCATATATCCTTTTTT+TGG | - | chr6_3:85276932-85276951 | None:intergenic | 15.0% |
| !!! | TAACATTTCTTCTAAAAAAA+AGG | + | chr6_3:85277196-85277215 | Msa0962240:intron | 15.0% |
| !!! | TGTATCAAATAAAATGATTT+TGG | + | chr6_3:85277232-85277251 | Msa0962240:intron | 15.0% |
| !!! | CAGAATATTTATCTAAAATT+TGG | - | chr6_3:85277353-85277372 | None:intergenic | 15.0% |
| !! | TATCTAGTATAAGAGATTAT+AGG | + | chr6_3:85270849-85270868 | Msa0962240:intron | 20.0% |
| !!! | TTTTTGTAACTAGTTAAAAC+AGG | - | chr6_3:85270926-85270945 | None:intergenic | 20.0% |
| !!! | AATTTGCTTATAAATGAGAT+CGG | - | chr6_3:85270965-85270984 | None:intergenic | 20.0% |
| !!! | TAAGCAAATTTTCACTTTTT+AGG | - | chr6_3:85271064-85271083 | None:intergenic | 20.0% |
| !!! | CTTATAATTTATTTCTTGGA+AGG | + | chr6_3:85271080-85271099 | Msa0962240:intron | 20.0% |
| !! | ATTAATTAAATATCATGAGG+TGG | + | chr6_3:85271125-85271144 | Msa0962240:intron | 20.0% |
| !!! | AATATTTTTTTCTTTCTTGG+TGG | + | chr6_3:85271165-85271184 | Msa0962240:intron | 20.0% |
| !! | TCCAATACTAATAAATCTAA+GGG | + | chr6_3:85271285-85271304 | Msa0962240:intron | 20.0% |
| !! | CATTGAATAAATGATATATG+TGG | + | chr6_3:85271413-85271432 | Msa0962240:intron | 20.0% |
| !!! | TAAGCAAATTTTCACATTTT+AGG | - | chr6_3:85271476-85271495 | None:intergenic | 20.0% |
| !! | TCTAAATATTTGTACATGAA+TGG | - | chr6_3:85271547-85271566 | None:intergenic | 20.0% |
| !! | ATGTACAAATATTTAGAAAC+AGG | + | chr6_3:85271550-85271569 | Msa0962240:intron | 20.0% |
| !! | GAATTTAAGTAAAACCAATA+TGG | + | chr6_3:85271572-85271591 | Msa0962240:intron | 20.0% |
| !! | CAATTACAAAAATACCATAT+TGG | - | chr6_3:85271589-85271608 | None:intergenic | 20.0% |
| !! | AGTTTATATAGTTGAATAGT+TGG | + | chr6_3:85271744-85271763 | Msa0962240:intron | 20.0% |
| !! | GTTTATATAGTTGAATAGTT+GGG | + | chr6_3:85271745-85271764 | Msa0962240:intron | 20.0% |
| !!! | TTATCAAGATTTTTCACATA+GGG | + | chr6_3:85271768-85271787 | Msa0962240:intron | 20.0% |
| !! | ATTTATTTGAATAAGCATAG+AGG | + | chr6_3:85272015-85272034 | Msa0962240:intron | 20.0% |
| !! | TATGAACAAAAAATTCAAGT+TGG | + | chr6_3:85272284-85272303 | Msa0962240:intron | 20.0% |
| !!! | ATGAACAAAAAATTCAAGTT+GGG | + | chr6_3:85272285-85272304 | Msa0962240:intron | 20.0% |
| !!! | TAATGTTATCTTTTAATGGA+GGG | - | chr6_3:85272327-85272346 | None:intergenic | 20.0% |
| !!! | CTTTTACTTTAAACAATACA+TGG | + | chr6_3:85272422-85272441 | Msa0962240:intron | 20.0% |
| !!! | GTGAATTTTAATATTTCACT+AGG | - | chr6_3:85272682-85272701 | None:intergenic | 20.0% |
| !!! | ACTTGTTTGTTAAATTTTGT+AGG | + | chr6_3:85272708-85272727 | Msa0962240:intron | 20.0% |
| !!! | AAAATATCATCAGTTCTTTT+AGG | + | chr6_3:85273375-85273394 | Msa0962240:intron | 20.0% |
| !! | ATATCCATATTATTTCATTC+AGG | + | chr6_3:85273544-85273563 | Msa0962240:intron | 20.0% |
| !!! | TTCAGAAATCTTGTTTATTT+TGG | + | chr6_3:85274080-85274099 | Msa0962240:intron | 20.0% |
| !!! | TATTGGAATTTTACAGATTT+GGG | - | chr6_3:85274548-85274567 | None:intergenic | 20.0% |
| !! | AATTAATAAAGGGTCTATTA+TGG | + | chr6_3:85274617-85274636 | Msa0962240:intron | 20.0% |
| !! | TAGTAAGGATGTTAAAAATA+CGG | - | chr6_3:85274680-85274699 | None:intergenic | 20.0% |
| !!! | AAAATTTGGTTTCCATTAAA+AGG | + | chr6_3:85274854-85274873 | Msa0962240:intron | 20.0% |
| !!! | TGTTTTATCTGCTTATAATT+TGG | + | chr6_3:85275050-85275069 | Msa0962240:intron | 20.0% |
| !! | TTAACAAATGACAATAAGTA+AGG | - | chr6_3:85275424-85275443 | None:intergenic | 20.0% |
| !! | ACTATTTATATTGACGAAAA+AGG | + | chr6_3:85275584-85275603 | Msa0962240:intron | 20.0% |
| !!! | ATCAAAAGTGTTTTTTGATT+AGG | - | chr6_3:85275819-85275838 | None:intergenic | 20.0% |
| !! | TTTAAGAATAGAAATGAAGA+GGG | - | chr6_3:85276103-85276122 | None:intergenic | 20.0% |
| !!! | TTTTAAGAATAGAAATGAAG+AGG | - | chr6_3:85276104-85276123 | None:intergenic | 20.0% |
| !!! | CGAAACAAAAATTTGAATTT+TGG | - | chr6_3:85276387-85276406 | None:intergenic | 20.0% |
| !! | TAATTAAGTCAAGATAAATC+AGG | + | chr6_3:85276459-85276478 | Msa0962240:intron | 20.0% |
| !! | AAAACCGAAAAAACTAAATT+GGG | + | chr6_3:85276718-85276737 | Msa0962240:intron | 20.0% |
| !!! | TTTAGAATAGTCAGTTAATT+TGG | + | chr6_3:85276843-85276862 | Msa0962240:intron | 20.0% |
| !!! | TTTATTTAGTTTATGTAGTC+AGG | + | chr6_3:85277024-85277043 | Msa0962240:intron | 20.0% |
| !! | GAAATGTTAAATTCTAACTA+AGG | - | chr6_3:85277185-85277204 | None:intergenic | 20.0% |
| !!! | GATTCAAAATCATTTTTTTG+TGG | - | chr6_3:85277331-85277350 | None:intergenic | 20.0% |
| !! | AGGTATTAAAAATTGTCAAT+TGG | + | chr6_3:85277419-85277438 | Msa0962240:intron | 20.0% |
| !! | TTTAGTGTCTTTAAATACAT+AGG | + | chr6_3:85277485-85277504 | Msa0962240:intron | 20.0% |
| ! | AGCATCACAAAAAACAAATA+AGG | - | chr6_3:85270368-85270387 | None:intergenic | 25.0% |
| !! | ACTTTGAACCATTTATTTCT+TGG | + | chr6_3:85270778-85270797 | Msa0962240:intron | 25.0% |
| ! | ATATAAAAATAAGCCTCCAA+TGG | - | chr6_3:85270832-85270851 | None:intergenic | 25.0% |
| ! | TCCAATACTAATAAATCCAA+GGG | + | chr6_3:85270872-85270891 | Msa0962240:intron | 25.0% |
| !! | ATTATGTTTTCAACTATGAG+TGG | + | chr6_3:85271218-85271237 | Msa0962240:intron | 25.0% |
| ! | AAGCTAGTATAAGAGATTAT+AGG | + | chr6_3:85271262-85271281 | Msa0962240:intron | 25.0% |
| ! | GTCCAATACTAATAAATCTA+AGG | + | chr6_3:85271284-85271303 | Msa0962240:intron | 25.0% |
| ! | CCAATACTAATAAATCTAAG+GGG | + | chr6_3:85271286-85271305 | Msa0962240:intron | 25.0% |
| ! | CATTGAATAAATGATGTATG+TGG | - | chr6_3:85271039-85271058 | None:intergenic | 25.0% |
| !!! | GGTATTTTTGTAATTGTTAG+TGG | + | chr6_3:85271593-85271612 | Msa0962240:intron | 25.0% |
| !! | GTTATCAAGATTTTTCACAT+AGG | + | chr6_3:85271767-85271786 | Msa0962240:intron | 25.0% |
| !! | TATCAAGATTTTTCACATAG+GGG | + | chr6_3:85271769-85271788 | Msa0962240:intron | 25.0% |
| ! | AAATCTTCTTTCCTTTCAAA+TGG | - | chr6_3:85271820-85271839 | None:intergenic | 25.0% |
| !! | TTGAACTTAAAAGCATATAC+AGG | + | chr6_3:85271924-85271943 | Msa0962240:intron | 25.0% |
| ! | AATAAACAATCCAAAGAACA+TGG | - | chr6_3:85271954-85271973 | None:intergenic | 25.0% |
| ! | CAAAAACATACTCTCAAATT+AGG | - | chr6_3:85272141-85272160 | None:intergenic | 25.0% |
| !!! | ATTTTTCAGTTCTCCATTTT+TGG | + | chr6_3:85272252-85272271 | Msa0962240:intron | 25.0% |
| !!! | TTTTTCAGTTCTCCATTTTT+GGG | + | chr6_3:85272253-85272272 | Msa0962240:intron | 25.0% |
| !!! | TGAACAAAAAATTCAAGTTG+GGG | + | chr6_3:85272286-85272305 | Msa0962240:intron | 25.0% |
| !! | AATGTTATCTTTTAATGGAG+GGG | - | chr6_3:85272326-85272345 | None:intergenic | 25.0% |
| !! | CTAATGTTATCTTTTAATGG+AGG | - | chr6_3:85272328-85272347 | None:intergenic | 25.0% |
| ! | CGTTCACAAAATATTATCAA+GGG | - | chr6_3:85272472-85272491 | None:intergenic | 25.0% |
| ! | TCGTTCACAAAATATTATCA+AGG | - | chr6_3:85272473-85272492 | None:intergenic | 25.0% |
| !! | TGATAATATTTTGTGAACGA+AGG | + | chr6_3:85272473-85272492 | Msa0962240:intron | 25.0% |
| ! | TAAGATAATCAGAAGTCATA+TGG | + | chr6_3:85272570-85272589 | Msa0962240:intron | 25.0% |
| ! | AAGATAATCAGAAGTCATAT+GGG | + | chr6_3:85272571-85272590 | Msa0962240:intron | 25.0% |
| ! | TTGTAACTGATAATTAGAAG+TGG | + | chr6_3:85272602-85272621 | Msa0962240:intron | 25.0% |
| !! | TAGAAGTGGACATATATTTT+TGG | + | chr6_3:85272616-85272635 | Msa0962240:intron | 25.0% |
| !!! | TGTTTGTTAAATTTTGTAGG+AGG | + | chr6_3:85272711-85272730 | Msa0962240:intron | 25.0% |
| !!! | GTTTGTTAAATTTTGTAGGA+GGG | + | chr6_3:85272712-85272731 | Msa0962240:intron | 25.0% |
| ! | AATACATGATAGAAAGCAAT+CGG | - | chr6_3:85272820-85272839 | None:intergenic | 25.0% |
| ! | CTATCATGTATTGTATTGAA+TGG | + | chr6_3:85272828-85272847 | Msa0962240:intron | 25.0% |
| !! | TGTATTGTATTGAATGGTTT+TGG | + | chr6_3:85272834-85272853 | Msa0962240:intron | 25.0% |
| !!! | TTAAAATCAAACTAGCTTTC+TGG | - | chr6_3:85273423-85273442 | None:intergenic | 25.0% |
| ! | ATCAATTTCTCATAATATGG+AGG | - | chr6_3:85273447-85273466 | None:intergenic | 25.0% |
| ! | GATACCTGAATGAAATAATA+TGG | - | chr6_3:85273551-85273570 | None:intergenic | 25.0% |
| ! | ATGATAGAACTCTATTACTT+AGG | + | chr6_3:85273708-85273727 | Msa0962240:intron | 25.0% |
| !! | TTCATGATATTGAGCTTTTA+TGG | + | chr6_3:85274202-85274221 | Msa0962240:intron | 25.0% |
| !! | CTATTGGAATTTTACAGATT+TGG | - | chr6_3:85274549-85274568 | None:intergenic | 25.0% |
| ! | CAAATCTGTAAAATTCCAAT+AGG | + | chr6_3:85274547-85274566 | Msa0962240:intron | 25.0% |
| ! | TAATGGCAAATAAAACCTAT+TGG | - | chr6_3:85274565-85274584 | None:intergenic | 25.0% |
| !!! | GTTAAAAATACGGTATTGAT+GGG | - | chr6_3:85274670-85274689 | None:intergenic | 25.0% |
| !! | TGTTAAAAATACGGTATTGA+TGG | - | chr6_3:85274671-85274690 | None:intergenic | 25.0% |
| ! | TAGATACTATATTCCAGAAA+TGG | + | chr6_3:85274708-85274727 | Msa0962240:intron | 25.0% |
| !!! | TTCCTCTTATTTTTCATTCA+AGG | - | chr6_3:85274986-85275005 | None:intergenic | 25.0% |
| !! | GTTTAAAAGAATTTGACTTC+TGG | + | chr6_3:85275465-85275484 | Msa0962240:intron | 25.0% |
| ! | GTCAATATAAATAGTGCTAT+AGG | - | chr6_3:85275579-85275598 | None:intergenic | 25.0% |
| ! | ATAAAATCACTCACAAAAAG+TGG | + | chr6_3:85275986-85276005 | Msa0962240:intron | 25.0% |
| ! | TTCAACTTAACAATCAATGT+CGG | + | chr6_3:85276047-85276066 | Msa0962240:intron | 25.0% |
| ! | TTAAGAATAGAAATGAAGAG+GGG | - | chr6_3:85276102-85276121 | None:intergenic | 25.0% |
| !!! | CACGTGATTGTATAATTTTT+TGG | - | chr6_3:85276205-85276224 | None:intergenic | 25.0% |
| !!! | TTTTTGTTTCGCAGTTTAAA+TGG | + | chr6_3:85276396-85276415 | Msa0962240:intron | 25.0% |
| !!! | CAATTTAGTTTTTTCGGTTT+TGG | - | chr6_3:85276719-85276738 | None:intergenic | 25.0% |
| ! | CAAAACCGAAAAAACTAAAT+TGG | + | chr6_3:85276717-85276736 | Msa0962240:intron | 25.0% |
| ! | AAACCGAAAAAACTAAATTG+GGG | + | chr6_3:85276719-85276738 | Msa0962240:intron | 25.0% |
| ! | GTTAGGTAGATTAAGATATA+TGG | + | chr6_3:85276896-85276915 | Msa0962240:intron | 25.0% |
| ! | GGTTATTATTGACCAAAAAA+AGG | + | chr6_3:85276917-85276936 | Msa0962240:intron | 25.0% |
| !! | CTATGTTTGTTAGTTAAGTT+AGG | + | chr6_3:85276976-85276995 | Msa0962240:intron | 25.0% |
| ! | AAGAAGATAGATTTCAATGA+AGG | + | chr6_3:85277134-85277153 | Msa0962240:intron | 25.0% |
| ! | AGAAGATAGATTTCAATGAA+GGG | + | chr6_3:85277135-85277154 | Msa0962240:intron | 25.0% |
| ! | GACAGTGTATAATATATGTA+AGG | + | chr6_3:85277283-85277302 | Msa0962240:intron | 25.0% |
| ! | TAATATTTGTTCAAATGTGC+AGG | + | chr6_3:85277448-85277467 | Msa0962240:intron | 25.0% |
| !! | AGACACTAAAATTTTGTCTA+TGG | - | chr6_3:85277475-85277494 | None:intergenic | 25.0% |
| !!! | TGTTTTTTGTGATGCTTGAT+TGG | + | chr6_3:85270372-85270391 | Msa0962240:intron | 30.0% |
| !! | TGATGATGTTTGTTCTGTTT+TGG | + | chr6_3:85270429-85270448 | Msa0962240:intron | 30.0% |
| AAAGGATGTGAATTTGGATT+TGG | + | chr6_3:85270517-85270536 | Msa0962240:intron | 30.0% | |
| AAGGATGTGAATTTGGATTT+GGG | + | chr6_3:85270518-85270537 | Msa0962240:intron | 30.0% | |
| ACAACTATCATCAGACAAAA+AGG | - | chr6_3:85270611-85270630 | None:intergenic | 30.0% | |
| TGATGAGATGTTTGAATTTG+AGG | + | chr6_3:85270665-85270684 | Msa0962240:intron | 30.0% | |
| ! | TGAACCATTTATTTCTTGGA+AGG | + | chr6_3:85270782-85270801 | Msa0962240:intron | 30.0% |
| TAGACCTTCCAAGAAATAAA+TGG | - | chr6_3:85270789-85270808 | None:intergenic | 30.0% | |
| TGGACAACTCATTAGAATAT+TGG | - | chr6_3:85270812-85270831 | None:intergenic | 30.0% | |
| TATTCTAATGAGTTGTCCAT+TGG | + | chr6_3:85270813-85270832 | Msa0962240:intron | 30.0% | |
| GTCCAATACTAATAAATCCA+AGG | + | chr6_3:85270871-85270890 | Msa0962240:intron | 30.0% | |
| CCAATACTAATAAATCCAAG+GGG | + | chr6_3:85270873-85270892 | Msa0962240:intron | 30.0% | |
| CATTGAATAAATGACGTATG+TGG | + | chr6_3:85271000-85271019 | Msa0962240:intron | 30.0% | |
| ! | CTTTAAAAATAAGCCTCCAA+TGG | - | chr6_3:85271245-85271264 | None:intergenic | 30.0% |
| CCCCTTAGATTTATTAGTAT+TGG | - | chr6_3:85271289-85271308 | None:intergenic | 30.0% | |
| TGTTTATAAATGAGACCGAA+GGG | - | chr6_3:85271374-85271393 | None:intergenic | 30.0% | |
| TTGTTTATAAATGAGACCGA+AGG | - | chr6_3:85271375-85271394 | None:intergenic | 30.0% | |
| ATGGTGAAATCAAACAGATA+AGG | - | chr6_3:85271528-85271547 | None:intergenic | 30.0% | |
| ! | ACAATACAAAGGGTTTTTGT+TGG | - | chr6_3:85271648-85271667 | None:intergenic | 30.0% |
| GTTCAAATGGAAAAGAATCT+GGG | + | chr6_3:85271696-85271715 | Msa0962240:intron | 30.0% | |
| ! | ATCAAGATTTTTCACATAGG+GGG | + | chr6_3:85271770-85271789 | Msa0962240:intron | 30.0% |
| ! | TTGTTAAAGTATTCAGCTCA+TGG | + | chr6_3:85271972-85271991 | Msa0962240:intron | 30.0% |
| ! | TGCATATGATTGAGCTTTTT+AGG | + | chr6_3:85272094-85272113 | Msa0962240:intron | 30.0% |
| !! | TTTTCAGTTCTCCATTTTTG+GGG | + | chr6_3:85272254-85272273 | Msa0962240:intron | 30.0% |
| CATAAAAAATCCCCCAAAAA+TGG | - | chr6_3:85272268-85272287 | None:intergenic | 30.0% | |
| TTGATCTATGTAAGTAGAAG+AGG | + | chr6_3:85272770-85272789 | Msa0962240:CDS | 30.0% | |
| ATACATGATAGAAAGCAATC+GGG | - | chr6_3:85272819-85272838 | None:intergenic | 30.0% | |
| !!! | TTGTATTGAATGGTTTTGGT+TGG | + | chr6_3:85272838-85272857 | Msa0962240:intron | 30.0% |
| !!! | TGTATTGAATGGTTTTGGTT+GGG | + | chr6_3:85272839-85272858 | Msa0962240:intron | 30.0% |
| !! | GTATTTAAGAGTACTGATCA+GGG | - | chr6_3:85273045-85273064 | None:intergenic | 30.0% |
| !! | TGTATTTAAGAGTACTGATC+AGG | - | chr6_3:85273046-85273065 | None:intergenic | 30.0% |
| GAATCTGCTCTCAATAAAAT+AGG | + | chr6_3:85273215-85273234 | Msa0962240:intron | 30.0% | |
| CAAGTAGCAATTATGTCTAT+AGG | - | chr6_3:85273333-85273352 | None:intergenic | 30.0% | |
| CTATAGACATAATTGCTACT+TGG | + | chr6_3:85273331-85273350 | Msa0962240:intron | 30.0% | |
| ! | ACATAATTGCTACTTGGTAT+TGG | + | chr6_3:85273337-85273356 | Msa0962240:intron | 30.0% |
| !!! | ATCAGTTCTTTTAGGATAGT+TGG | + | chr6_3:85273383-85273402 | Msa0962240:intron | 30.0% |
| AACCAAGAAAAACACTAGTA+AGG | - | chr6_3:85273670-85273689 | None:intergenic | 30.0% | |
| !! | TGTTTTTCTTGGTTGACTTT+GGG | + | chr6_3:85273676-85273695 | Msa0962240:intron | 30.0% |
| GAACTCTATTACTTAGGAAA+AGG | + | chr6_3:85273714-85273733 | Msa0962240:intron | 30.0% | |
| TACAACTTCATTAGATGTTC+TGG | + | chr6_3:85273882-85273901 | Msa0962240:intron | 30.0% | |
| ATTTAGCAGATTCATTTCAC+AGG | - | chr6_3:85273932-85273951 | None:intergenic | 30.0% | |
| TGCAATGTTATTGCTCTTAA+TGG | + | chr6_3:85273957-85273976 | Msa0962240:intron | 30.0% | |
| AAATATATTGCCTCATGCAT+GGG | - | chr6_3:85274018-85274037 | None:intergenic | 30.0% | |
| AAAATATATTGCCTCATGCA+TGG | - | chr6_3:85274019-85274038 | None:intergenic | 30.0% | |
| !!! | GAAATCTTGTTTATTTTGGC+AGG | + | chr6_3:85274084-85274103 | Msa0962240:intron | 30.0% |
| ATGAATCTACAAAGAACTCT+AGG | - | chr6_3:85274248-85274267 | None:intergenic | 30.0% | |
| CTGTTTCAAAAGAAAGTTGA+AGG | + | chr6_3:85274321-85274340 | Msa0962240:intron | 30.0% | |
| TTATCTAAATCTCTTCACGT+AGG | + | chr6_3:85274408-85274427 | Msa0962240:intron | 30.0% | |
| GGCATATAATTGTTTGTCTT+TGG | + | chr6_3:85274429-85274448 | Msa0962240:intron | 30.0% | |
| AATGCAGCAAGACAAATTAT+TGG | - | chr6_3:85274507-85274526 | None:intergenic | 30.0% | |
| AACAAATTGCAGGTGATTAA+TGG | - | chr6_3:85274582-85274601 | None:intergenic | 30.0% | |
| CAAAACTTCAAACAAATTGC+AGG | - | chr6_3:85274592-85274611 | None:intergenic | 30.0% | |
| TATTATGGTACTAGGTCAAT+TGG | + | chr6_3:85274632-85274651 | Msa0962240:intron | 30.0% | |
| GTATCTACTCAAGTATAGTA+AGG | - | chr6_3:85274695-85274714 | None:intergenic | 30.0% | |
| TTTATGGTGCGGATATAAAA+TGG | + | chr6_3:85274736-85274755 | Msa0962240:intron | 30.0% | |
| !! | ATGAAAGTGTTTGACGAATT+TGG | + | chr6_3:85274794-85274813 | Msa0962240:intron | 30.0% |
| ! | GTAGGTAACTTACCTTTTAA+TGG | - | chr6_3:85274869-85274888 | None:intergenic | 30.0% |
| ! | TAGAAAGGATTTTTGCTTAC+AGG | - | chr6_3:85274962-85274981 | None:intergenic | 30.0% |
| ! | TTTTTCATTCAAGGCTAGAA+AGG | - | chr6_3:85274977-85274996 | None:intergenic | 30.0% |
| AGCCTTGAATGAAAAATAAG+AGG | + | chr6_3:85274981-85275000 | Msa0962240:intron | 30.0% | |
| !! | TTTAGTAGAAGCATGTGTTT+TGG | - | chr6_3:85275347-85275366 | None:intergenic | 30.0% |
| ! | TGACGAAAAAGGTGTAAAAA+TGG | + | chr6_3:85275595-85275614 | Msa0962240:intron | 30.0% |
| AACTACAACTCAAAAACACT+TGG | - | chr6_3:85275651-85275670 | None:intergenic | 30.0% | |
| GCTTGGCATATTTATAGAAA+TGG | - | chr6_3:85275684-85275703 | None:intergenic | 30.0% | |
| TAGCAAATTTGTATTGTGCT+TGG | - | chr6_3:85275701-85275720 | None:intergenic | 30.0% | |
| ! | TCACAAAAAGTGGAAGATTT+TGG | + | chr6_3:85275996-85276015 | Msa0962240:intron | 30.0% |
| ! | CACAAAAAGTGGAAGATTTT+GGG | + | chr6_3:85275997-85276016 | Msa0962240:intron | 30.0% |
| AAAATCTTATGTGTCGTCTT+GGG | - | chr6_3:85276029-85276048 | None:intergenic | 30.0% | |
| TATAGTACAACATAAGTGAG+TGG | + | chr6_3:85276484-85276503 | Msa0962240:intron | 30.0% | |
| !! | CTGATCTTAAAAGTGTTCAA+CGG | + | chr6_3:85276686-85276705 | Msa0962240:intron | 30.0% |
| !!! | CTACCCCAATTTAGTTTTTT+CGG | - | chr6_3:85276725-85276744 | None:intergenic | 30.0% |
| ! | TCTGAAGAATCTTGTTATGT+GGG | + | chr6_3:85276791-85276810 | Msa0962240:intron | 30.0% |
| TATTAGTGAGGCTACTAAAT+TGG | - | chr6_3:85276875-85276894 | None:intergenic | 30.0% | |
| ATCTACCTAACATATTAGTG+AGG | - | chr6_3:85276887-85276906 | None:intergenic | 30.0% | |
| AGTCAACAAAACGTAATGTA+AGG | - | chr6_3:85276955-85276974 | None:intergenic | 30.0% | |
| !!! | AATCATTTTTTTGTGGTGTC+CGG | - | chr6_3:85277324-85277343 | None:intergenic | 30.0% |
| !! | TCTGAGTTTTGATGATAACA+AGG | + | chr6_3:85277399-85277418 | Msa0962240:intron | 30.0% |
| TGCTTGATTGGTGCATAAAT+TGG | + | chr6_3:85270384-85270403 | Msa0962240:intron | 35.0% | |
| GCTTGATTGGTGCATAAATT+GGG | + | chr6_3:85270385-85270404 | Msa0962240:intron | 35.0% | |
| !! | TGATGTTTGTTCTGTTTTGG+TGG | + | chr6_3:85270432-85270451 | Msa0962240:intron | 35.0% |
| GACGATGACAAAGATCAATA+AGG | - | chr6_3:85270467-85270486 | None:intergenic | 35.0% | |
| TCATCAGACAAAAAGGAGTT+GGG | - | chr6_3:85270604-85270623 | None:intergenic | 35.0% | |
| ATCATCAGACAAAAAGGAGT+TGG | - | chr6_3:85270605-85270624 | None:intergenic | 35.0% | |
| GATGTTTGAATTTGAGGAGT+TGG | + | chr6_3:85270671-85270690 | Msa0962240:intron | 35.0% | |
| CCCCTTGGATTTATTAGTAT+TGG | - | chr6_3:85270876-85270895 | None:intergenic | 35.0% | |
| TGCTTATAAATGAGATCGGA+GGG | - | chr6_3:85270961-85270980 | None:intergenic | 35.0% | |
| TTGCTTATAAATGAGATCGG+AGG | - | chr6_3:85270962-85270981 | None:intergenic | 35.0% | |
| TTGCTTATAAATGAGACCGA+AGG | + | chr6_3:85271489-85271508 | Msa0962240:intron | 35.0% | |
| AGGAAGTGAATATACTCCTT+CGG | - | chr6_3:85271508-85271527 | None:intergenic | 35.0% | |
| ! | AAAGGGTTTTTGTTGGCATA+AGG | - | chr6_3:85271641-85271660 | None:intergenic | 35.0% |
| CATTTGAACGTTATGTGAGA+AGG | - | chr6_3:85271685-85271704 | None:intergenic | 35.0% | |
| CTTCTCACATAACGTTCAAA+TGG | + | chr6_3:85271683-85271702 | Msa0962240:intron | 35.0% | |
| CGTTCAAATGGAAAAGAATC+TGG | + | chr6_3:85271695-85271714 | Msa0962240:intron | 35.0% | |
| GGATGTATGGTGTAAATTTC+AGG | + | chr6_3:85271720-85271739 | Msa0962240:intron | 35.0% | |
| CTAAGTTCTCTCCATTTGAA+AGG | + | chr6_3:85271806-85271825 | Msa0962240:intron | 35.0% | |
| TATTCAGCTCATGGATCAAA+TGG | + | chr6_3:85271981-85272000 | Msa0962240:intron | 35.0% | |
| GAACTGAAAAATTGCATTGG+AGG | - | chr6_3:85272244-85272263 | None:intergenic | 35.0% | |
| GGAGAACTGAAAAATTGCAT+TGG | - | chr6_3:85272247-85272266 | None:intergenic | 35.0% | |
| !! | TTTCAGTTCTCCATTTTTGG+GGG | + | chr6_3:85272255-85272274 | Msa0962240:intron | 35.0% |
| ! | ATGGTCCCTTATTGTTTTCT+GGG | + | chr6_3:85272441-85272460 | Msa0962240:intron | 35.0% |
| TAGATCAAGCTGTTACAAGA+TGG | - | chr6_3:85272758-85272777 | None:intergenic | 35.0% | |
| AGAGCAGATTCTTCATGAAT+AGG | - | chr6_3:85273206-85273225 | None:intergenic | 35.0% | |
| TGCTCTCAATAAAATAGGCT+GGG | + | chr6_3:85273220-85273239 | Msa0962240:intron | 35.0% | |
| !! | GAGAAATTGATTTTCAGCAC+TGG | + | chr6_3:85273456-85273475 | Msa0962240:intron | 35.0% |
| TAATCCTAAGCTATCAAGTG+AGG | - | chr6_3:85273573-85273592 | None:intergenic | 35.0% | |
| TGAACAATTGCGTACTGAAA+TGG | + | chr6_3:85273643-85273662 | Msa0962240:intron | 35.0% | |
| ! | GTCCTTACTAGTGTTTTTCT+TGG | + | chr6_3:85273665-85273684 | Msa0962240:intron | 35.0% |
| !! | GTGTTTTTCTTGGTTGACTT+TGG | + | chr6_3:85273675-85273694 | Msa0962240:intron | 35.0% |
| AGGAGTTCTTTGAATCATAG+AGG | + | chr6_3:85273734-85273753 | Msa0962240:intron | 35.0% | |
| ! | ATCATAGAGGCAAAGTTTTG+TGG | + | chr6_3:85273747-85273766 | Msa0962240:intron | 35.0% |
| ATAGACACGGCTTAGAAAAA+CGG | - | chr6_3:85273798-85273817 | None:intergenic | 35.0% | |
| ! | TATGCATGGATTAAGCTCTT+AGG | - | chr6_3:85273837-85273856 | None:intergenic | 35.0% |
| AGAGCTTAATCCATGCATAA+TGG | + | chr6_3:85273838-85273857 | Msa0962240:intron | 35.0% | |
| GAGCTTAATCCATGCATAAT+GGG | + | chr6_3:85273839-85273858 | Msa0962240:intron | 35.0% | |
| TTGCTCTTAATGGTCTATCT+TGG | + | chr6_3:85273967-85273986 | Msa0962240:intron | 35.0% | |
| TGCTCTTAATGGTCTATCTT+GGG | + | chr6_3:85273968-85273987 | Msa0962240:intron | 35.0% | |
| ! | ATTTCTGAAAAGACCTGACT+GGG | - | chr6_3:85274069-85274088 | None:intergenic | 35.0% |
| TGATGTCAAATTCGAAGTAG+TGG | + | chr6_3:85274153-85274172 | Msa0962240:intron | 35.0% | |
| AATTTGTCTTGCTGCATTCA+TGG | + | chr6_3:85274509-85274528 | Msa0962240:intron | 35.0% | |
| AAAGGGTCTATTATGGTACT+AGG | + | chr6_3:85274624-85274643 | Msa0962240:intron | 35.0% | |
| !! | AAATACGGTATTGATGGGTT+AGG | - | chr6_3:85274665-85274684 | None:intergenic | 35.0% |
| !!! | TCCAGAAATGGCTTGTTTTA+TGG | + | chr6_3:85274720-85274739 | Msa0962240:intron | 35.0% |
| ACCATAAAACAAGCCATTTC+TGG | - | chr6_3:85274724-85274743 | None:intergenic | 35.0% | |
| !!! | AAATGGCTTGTTTTATGGTG+CGG | + | chr6_3:85274725-85274744 | Msa0962240:intron | 35.0% |
| !! | GAGGAAGTGTTTGATGAATT+TGG | + | chr6_3:85275000-85275019 | Msa0962240:intron | 35.0% |
| GGTGTAAAAATGGAAACCAT+TGG | + | chr6_3:85275605-85275624 | Msa0962240:intron | 35.0% | |
| ATCCAAAAATCGAAGTTGAG+AGG | - | chr6_3:85275947-85275966 | None:intergenic | 35.0% | |
| !! | TTCGATTTTTGGATCTCTAG+AGG | + | chr6_3:85275953-85275972 | Msa0962240:intron | 35.0% |
| GAAAATCTTATGTGTCGTCT+TGG | - | chr6_3:85276030-85276049 | None:intergenic | 35.0% | |
| TTGTTTCGCAGTTTAAATGG+AGG | + | chr6_3:85276399-85276418 | Msa0962240:intron | 35.0% | |
| !! | CTTTTTGTTTCCTGAAGTCA+TGG | + | chr6_3:85276524-85276543 | Msa0962240:intron | 35.0% |
| GGTAGTTTCCTTATTATCAG+TGG | + | chr6_3:85276740-85276759 | Msa0962240:intron | 35.0% | |
| ! | GTCTGAAGAATCTTGTTATG+TGG | + | chr6_3:85276790-85276809 | Msa0962240:intron | 35.0% |
| ! | CTGAAGAATCTTGTTATGTG+GGG | + | chr6_3:85276792-85276811 | Msa0962240:intron | 35.0% |
| AGTAGCCTCACTAATATGTT+AGG | + | chr6_3:85276879-85276898 | Msa0962240:intron | 35.0% | |
| ! | TTACGTAGTTGACTTTGATG+AGG | + | chr6_3:85277110-85277129 | Msa0962240:intron | 35.0% |
| ! | TACGTAGTTGACTTTGATGA+GGG | + | chr6_3:85277111-85277130 | Msa0962240:intron | 35.0% |
| TGAAGAACAAATGAGAGCAA+TGG | + | chr6_3:85277511-85277530 | Msa0962240:CDS | 35.0% | |
| GAGCAATGGAATCTACAAAA+AGG | + | chr6_3:85277525-85277544 | Msa0962240:CDS | 35.0% | |
| ACTCTTTCATTGATCAGTGG+TGG | - | chr6_3:85270293-85270312 | None:intergenic | 40.0% | |
| CTCACTCTTTCATTGATCAG+TGG | - | chr6_3:85270296-85270315 | None:intergenic | 40.0% | |
| CACTGATCAATGAAAGAGTG+AGG | + | chr6_3:85270294-85270313 | Msa0962240:CDS | 40.0% | |
| TTGGTGCATAAATTGGGACA+CGG | + | chr6_3:85270391-85270410 | Msa0962240:intron | 40.0% | |
| GCATGCAAAGGATGTGAATT+TGG | + | chr6_3:85270511-85270530 | Msa0962240:intron | 40.0% | |
| TCTAATGAGTTGTCCATTGG+AGG | + | chr6_3:85270816-85270835 | Msa0962240:intron | 40.0% | |
| CCTTAAATCAAATAGCCCCT+TGG | - | chr6_3:85270891-85270910 | None:intergenic | 40.0% | |
| ! | CCAAGGGGCTATTTGATTTA+AGG | + | chr6_3:85270888-85270907 | Msa0962240:intron | 40.0% |
| TTCAACTATGAGTGGTCCAT+TGG | + | chr6_3:85271226-85271245 | Msa0962240:intron | 40.0% | |
| ! | CTAAGGGGCTGTTTGATTTA+AGG | + | chr6_3:85271301-85271320 | Msa0962240:intron | 40.0% |
| CAAATGGAAAAGAATCTGGG+AGG | + | chr6_3:85271699-85271718 | Msa0962240:intron | 40.0% | |
| AAAGAATCTGGGAGGATGTA+TGG | + | chr6_3:85271707-85271726 | Msa0962240:intron | 40.0% | |
| TACAGGTCTTCCATGTTCTT+TGG | + | chr6_3:85271941-85271960 | Msa0962240:intron | 40.0% | |
| ! | CATGGTCCCTTATTGTTTTC+TGG | + | chr6_3:85272440-85272459 | Msa0962240:intron | 40.0% |
| ! | TGGTCCCTTATTGTTTTCTG+GGG | + | chr6_3:85272442-85272461 | Msa0962240:intron | 40.0% |
| TACCCCCCAGAAAACAATAA+GGG | - | chr6_3:85272449-85272468 | None:intergenic | 40.0% | |
| ATAGAAAGCAATCGGGTACA+CGG | - | chr6_3:85272812-85272831 | None:intergenic | 40.0% | |
| CTGCTCTCAATAAAATAGGC+TGG | + | chr6_3:85273219-85273238 | Msa0962240:intron | 40.0% | |
| ! | AGGATAGTTGGTTCATGACA+TGG | + | chr6_3:85273395-85273414 | Msa0962240:intron | 40.0% |
| AACCCAAATAACTCGTTGAG+AGG | + | chr6_3:85273510-85273529 | Msa0962240:intron | 40.0% | |
| ACCCAAATAACTCGTTGAGA+GGG | + | chr6_3:85273511-85273530 | Msa0962240:intron | 40.0% | |
| TCCCTCTCAACGAGTTATTT+GGG | - | chr6_3:85273515-85273534 | None:intergenic | 40.0% | |
| ! | GTATCCTCACTTGATAGCTT+AGG | + | chr6_3:85273566-85273585 | Msa0962240:intron | 40.0% |
| ! | TCTTGGTTGACTTTGGGTAA+AGG | + | chr6_3:85273682-85273701 | Msa0962240:intron | 40.0% |
| ! | CTTGGTTGACTTTGGGTAAA+GGG | + | chr6_3:85273683-85273702 | Msa0962240:intron | 40.0% |
| ! | TTGGTTGACTTTGGGTAAAG+GGG | + | chr6_3:85273684-85273703 | Msa0962240:intron | 40.0% |
| TGGATGTCACAGTATAGACA+CGG | - | chr6_3:85273811-85273830 | None:intergenic | 40.0% | |
| ! | CTTAATCCATGCATAATGGG+TGG | + | chr6_3:85273842-85273861 | Msa0962240:intron | 40.0% |
| ! | TTTGAAATCTTAGCCCAGTC+AGG | + | chr6_3:85274053-85274072 | Msa0962240:intron | 40.0% |
| ! | GATTTCTGAAAAGACCTGAC+TGG | - | chr6_3:85274070-85274089 | None:intergenic | 40.0% |
| CTCTAGGCGTCAAATGTTTA+TGG | - | chr6_3:85274232-85274251 | None:intergenic | 40.0% | |
| AGCTGCATTCTTAGTGAAGA+TGG | + | chr6_3:85274472-85274491 | Msa0962240:intron | 40.0% | |
| GCTGCATTCTTAGTGAAGAT+GGG | + | chr6_3:85274473-85274492 | Msa0962240:intron | 40.0% | |
| ! | GGATTTTTGCTTACAGGTCA+AGG | - | chr6_3:85274956-85274975 | None:intergenic | 40.0% |
| TATCTCGTCTATTTGCGTCA+TGG | + | chr6_3:85275099-85275118 | Msa0962240:intron | 40.0% | |
| ! | ACCATGAAGCCTTTTAGCAA+GGG | - | chr6_3:85275396-85275415 | None:intergenic | 40.0% |
| ! | AACCATGAAGCCTTTTAGCA+AGG | - | chr6_3:85275397-85275416 | None:intergenic | 40.0% |
| GCTTTACTTCTGATTACGTG+AGG | - | chr6_3:85275498-85275517 | None:intergenic | 40.0% | |
| AAGTAAAGCCACCAATGAAG+TGG | + | chr6_3:85275509-85275528 | Msa0962240:intron | 40.0% | |
| TGGAACAACTCTTGCGTTTA+CGG | - | chr6_3:85275631-85275650 | None:intergenic | 40.0% | |
| ! | CTCCTCTCAACTTCGATTTT+TGG | + | chr6_3:85275942-85275961 | Msa0962240:intron | 40.0% |
| AATGAAGAGGGGAATCTGTA+AGG | - | chr6_3:85276091-85276110 | None:intergenic | 40.0% | |
| CAAATTAGTGCCATGACTTC+AGG | - | chr6_3:85276537-85276556 | None:intergenic | 40.0% | |
| CCTTAGCTCCACTGATAATA+AGG | - | chr6_3:85276751-85276770 | None:intergenic | 40.0% | |
| CCTTATTATCAGTGGAGCTA+AGG | + | chr6_3:85276748-85276767 | Msa0962240:intron | 40.0% | |
| ! | AATCTTGTTATGTGGGGACT+GGG | + | chr6_3:85276798-85276817 | Msa0962240:intron | 40.0% |
| TAGTCAGGTTCAACTGATGA+AGG | + | chr6_3:85277039-85277058 | Msa0962240:intron | 40.0% | |
| AGTCAGGTTCAACTGATGAA+GGG | + | chr6_3:85277040-85277059 | Msa0962240:intron | 40.0% | |
| AAGGGGATTGAAGGAAAAGA+GGG | + | chr6_3:85277058-85277077 | Msa0962240:intron | 40.0% | |
| AAAAGGAAGCTTGTGTTGCA+AGG | + | chr6_3:85277542-85277561 | Msa0962240:CDS | 40.0% | |
| TGGTGCATAAATTGGGACAC+GGG | + | chr6_3:85270392-85270411 | Msa0962240:intron | 45.0% | |
| CATTTAGTGCGTGCATGCAA+AGG | + | chr6_3:85270499-85270518 | Msa0962240:intron | 45.0% | |
| AACTATGAGTGGTCCATTGG+AGG | + | chr6_3:85271229-85271248 | Msa0962240:intron | 45.0% | |
| AAATGCCACGATACTCCCTT+CGG | + | chr6_3:85271356-85271375 | Msa0962240:intron | 45.0% | |
| ! | GGTCCCTTATTGTTTTCTGG+GGG | + | chr6_3:85272443-85272462 | Msa0962240:intron | 45.0% |
| ! | GTCCCTTATTGTTTTCTGGG+GGG | + | chr6_3:85272444-85272463 | Msa0962240:intron | 45.0% |
| GTACCCCCCAGAAAACAATA+AGG | - | chr6_3:85272450-85272469 | None:intergenic | 45.0% | |
| TTGTGAACGAAGGAAGCAGA+AGG | + | chr6_3:85272483-85272502 | Msa0962240:intron | 45.0% | |
| TGTGAACGAAGGAAGCAGAA+GGG | + | chr6_3:85272484-85272503 | Msa0962240:intron | 45.0% | |
| GAGAAAAAACTAGAGTGCGC+TGG | - | chr6_3:85272642-85272661 | None:intergenic | 45.0% | |
| CTCCCTCTCAACGAGTTATT+TGG | - | chr6_3:85273516-85273535 | None:intergenic | 45.0% | |
| ACACGGCTTAGAAAAACGGA+AGG | - | chr6_3:85273794-85273813 | None:intergenic | 45.0% | |
| TGGATTAAGCTCTTAGGAGG+TGG | - | chr6_3:85273831-85273850 | None:intergenic | 45.0% | |
| ! | GCATGGATTAAGCTCTTAGG+AGG | - | chr6_3:85273834-85273853 | None:intergenic | 45.0% |
| AATGCACCACCCATTATGCA+TGG | - | chr6_3:85273851-85273870 | None:intergenic | 45.0% | |
| GAAATCTTGACCCATGCATG+AGG | + | chr6_3:85274005-85274024 | Msa0962240:intron | 45.0% | |
| !!! | GTCGTATCTGTCGATTTTGC+TGG | + | chr6_3:85274761-85274780 | Msa0962240:intron | 45.0% |
| ! | TTTTGCTTACAGGTCAAGGC+TGG | - | chr6_3:85274952-85274971 | None:intergenic | 45.0% |
| TCAATGCGTCCCTTGCTAAA+AGG | + | chr6_3:85275384-85275403 | Msa0962240:intron | 45.0% | |
| TCCCTTGCTAAAAGGCTTCA+TGG | + | chr6_3:85275392-85275411 | Msa0962240:intron | 45.0% | |
| AAAGCTCTCCACTTCATTGG+TGG | - | chr6_3:85275520-85275539 | None:intergenic | 45.0% | |
| GTGAAAGCTCTCCACTTCAT+TGG | - | chr6_3:85275523-85275542 | None:intergenic | 45.0% | |
| ! | GAATCTTGTTATGTGGGGAC+TGG | + | chr6_3:85276797-85276816 | Msa0962240:intron | 45.0% |
| ! | ATCTTGTTATGTGGGGACTG+GGG | + | chr6_3:85276799-85276818 | Msa0962240:intron | 45.0% |
| GGGGAGAATGGAGAAATGTT+TGG | + | chr6_3:85276818-85276837 | Msa0962240:intron | 45.0% | |
| GTCAGGTTCAACTGATGAAG+GGG | + | chr6_3:85277041-85277060 | Msa0962240:intron | 45.0% | |
| CAACTGATGAAGGGGATTGA+AGG | + | chr6_3:85277049-85277068 | Msa0962240:intron | 45.0% | |
| GAAGGGGATTGAAGGAAAAG+AGG | + | chr6_3:85277057-85277076 | Msa0962240:intron | 45.0% | |
| !! | ATTTTGGTCTCCGTGAGCTT+AGG | + | chr6_3:85277248-85277267 | Msa0962240:intron | 45.0% |
| TACCAACTGACCTAAGCTCA+CGG | - | chr6_3:85277261-85277280 | None:intergenic | 45.0% | |
| ! | TGAGCTTAGGTCAGTTGGTA+AGG | + | chr6_3:85277261-85277280 | Msa0962240:intron | 45.0% |
| AAGGTCCGAAGATCAAACTC+CGG | + | chr6_3:85277302-85277321 | Msa0962240:intron | 45.0% | |
| !! | GGAAGCGTTCTGAAGACAAA+AGG | + | chr6_3:85277563-85277582 | Msa0962240:CDS | 45.0% |
| ! | GCTTCTGATGACGTCATCTT+CGG | - | chr6_3:85277591-85277610 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTTTTTTTTTGAA+TGG | - | chr6_3:85272393-85272412 | None:intergenic | 5.0% |
| GCACATCTCTGTCCTAGAGA+AGG | + | chr6_3:85270266-85270285 | Msa0962240:CDS | 50.0% | |
| !! | ATCAGTGGTGGACCTTCTCT+AGG | - | chr6_3:85270281-85270300 | None:intergenic | 50.0% |
| GGTGCATAAATTGGGACACG+GGG | + | chr6_3:85270393-85270412 | Msa0962240:intron | 50.0% | |
| !! | TGAGATCGGAGGGAGTATTG+TGG | - | chr6_3:85270951-85270970 | None:intergenic | 50.0% |
| CGGGTACACGGTCAACTAAT+GGG | - | chr6_3:85272800-85272819 | None:intergenic | 50.0% | |
| TCGGGTACACGGTCAACTAA+TGG | - | chr6_3:85272801-85272820 | None:intergenic | 50.0% | |
| GTCTTGCTGCATTCATGGCT+TGG | + | chr6_3:85274514-85274533 | Msa0962240:intron | 50.0% | |
| CTTACAGGTCAAGGCTGGAA+AGG | - | chr6_3:85274947-85274966 | None:intergenic | 50.0% | |
| ACTCTTGCGTTTACGGCCAA+TGG | - | chr6_3:85275624-85275643 | None:intergenic | 50.0% | |
| GGTGTCCGGAGTTTGATCTT+CGG | - | chr6_3:85277310-85277329 | None:intergenic | 50.0% | |
| !! | TTGGGACACGGGGTATTGAC+AGG | + | chr6_3:85270403-85270422 | Msa0962240:intron | 55.0% |
| !! | TGGGACACGGGGTATTGACA+GGG | + | chr6_3:85270404-85270423 | Msa0962240:intron | 55.0% |
| !! | TGAGACCGAAGGGAGTATCG+TGG | - | chr6_3:85271364-85271383 | None:intergenic | 55.0% |
| TGTAGGAGGGATGCAGTGAG+TGG | + | chr6_3:85272725-85272744 | Msa0962240:intron | 55.0% | |
| TCTGGCTGCGAGTTGCAAAG+AGG | + | chr6_3:85273900-85273919 | Msa0962240:intron | 55.0% | |
| TATGTGGGGACTGGGGAGAA+TGG | + | chr6_3:85276806-85276825 | Msa0962240:intron | 55.0% | |
| CTCCGTGAGCTTAGGTCAGT+TGG | + | chr6_3:85277256-85277275 | Msa0962240:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 85270263 | 85277628 | 85270263 | ID=Msa0962240;Name=Msa0962240 |
| chr6_3 | mRNA | 85270263 | 85277628 | 85270263 | ID=Msa0962240-mRNA-1;Parent=Msa0962240;Name=Msa0962240-mRNA-1;_AED=0.85;_eAED=0.85;_QI=0|0|0.33|0.33|1|1|3|0|78 |
| chr6_3 | exon | 85270263 | 85270315 | 85270263 | ID=Msa0962240-mRNA-1:exon:15303;Parent=Msa0962240-mRNA-1 |
| chr6_3 | exon | 85272730 | 85272791 | 85272730 | ID=Msa0962240-mRNA-1:exon:15304;Parent=Msa0962240-mRNA-1 |
| chr6_3 | exon | 85277507 | 85277628 | 85277507 | ID=Msa0962240-mRNA-1:exon:15305;Parent=Msa0962240-mRNA-1 |
| chr6_3 | CDS | 85270263 | 85270315 | 85270263 | ID=Msa0962240-mRNA-1:cds;Parent=Msa0962240-mRNA-1 |
| chr6_3 | CDS | 85272730 | 85272791 | 85272730 | ID=Msa0962240-mRNA-1:cds;Parent=Msa0962240-mRNA-1 |
| chr6_3 | CDS | 85277507 | 85277628 | 85277507 | ID=Msa0962240-mRNA-1:cds;Parent=Msa0962240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
