AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene065099

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065099.t1 MTR_1g111400 97.230 686 16 1 1 683 1 686 0.0 1362
MS.gene065099.t1 MTR_1g111400 97.252 473 10 1 1 470 1 473 0.0 952
MS.gene065099.t1 MTR_8g463650 48.527 645 293 10 52 683 36 654 0.0 558
MS.gene065099.t1 MTR_8g463650 51.731 520 233 6 52 561 36 547 1.38e-175 512
MS.gene065099.t1 MTR_8g463650 66.570 344 114 1 52 394 36 379 1.96e-158 464
MS.gene065099.t1 MTR_8g463650 66.570 344 114 1 52 394 36 379 3.46e-158 464
MS.gene065099.t1 MTR_1g076810 53.666 341 155 2 60 398 307 646 2.44e-113 355
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065099.t1 AT3G10420 64.957 702 205 12 1 681 1 682 0.0 819
MS.gene065099.t1 AT3G10420 65.027 549 162 9 1 528 1 540 0.0 658
MS.gene065099.t1 AT1G73170 48.287 613 280 8 82 683 80 666 0.0 538
MS.gene065099.t1 AT1G73170 50.890 562 247 6 82 638 80 617 0.0 536
MS.gene065099.t1 AT1G73170 47.359 549 252 8 146 683 16 538 4.84e-159 469
MS.gene065099.t1 AT1G33290 53.714 350 148 6 57 398 19 362 2.49e-119 362
MS.gene065099.t1 AT1G33290 58.276 290 116 3 112 398 1 288 5.43e-113 342
MS.gene065099.t1 AT1G73170 39.952 418 214 8 277 683 1 392 1.60e-81 264
MS.gene065099.t1 AT1G33290 49.099 222 88 6 57 258 19 235 2.33e-55 191
MS.gene065099.t1 AT1G33290 51.389 72 34 1 327 398 216 286 7.12e-15 76.6

Find 174 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAAGCTCCGCTGTGGTTT+CGG 0.180628 1.2:-82488039 None:intergenic
ACCATTATAATTGATGAAAT+TGG 0.186337 1.2:+82489458 MS.gene065099:CDS
ATTGAAGTTGTTATGGATTT+AGG 0.190737 1.2:+82488131 MS.gene065099:CDS
GTTTCTTCATGGCTTATTTC+AGG 0.202929 1.2:-82490159 None:intergenic
TTCAACTGTGGATGCTATTT+TGG 0.203491 1.2:+82489951 MS.gene065099:CDS
TCAAGCTCCGCTGTGGTTTC+GGG 0.211037 1.2:-82488038 None:intergenic
TCATCAATTATAATGGTTTC+AGG 0.225693 1.2:-82489452 None:intergenic
TCATCGTCAATTTCAATATC+TGG 0.234846 1.2:-82490863 None:intergenic
TTGAATCATTCAGGTAAAAT+AGG 0.252962 1.2:-82492011 None:intergenic
CTAGATTCCCTTCTGGTGAT+TGG 0.254727 1.2:+82488168 MS.gene065099:CDS
TCCAATTTCATCAATTATAA+TGG 0.266424 1.2:-82489459 None:intergenic
TTAAAATGTTGACCTGATTA+AGG 0.273025 1.2:-82488944 None:intergenic
AGAAGCTGAAGAAGATGATT+TGG 0.281013 1.2:-82487949 None:intergenic
AGCGGAGCTTGATATGTTTC+TGG 0.292311 1.2:+82488049 MS.gene065099:CDS
GTGGATACATCCAATGAAAT+TGG 0.294748 1.2:+82489200 MS.gene065099:CDS
ACTAGACTTGGAGGGTCTTT+TGG 0.295771 1.2:-82491904 None:intergenic
TCATGGCTTATTTCAGGTAT+TGG 0.299020 1.2:-82490153 None:intergenic
AAAACAATTTATTGTTGTTA+AGG 0.301161 1.2:-82487878 None:intergenic
ACTATTATCACTCCATTTCA+TGG 0.305396 1.2:-82490268 None:intergenic
TTAAATCCGATGTTTCTTCA+TGG 0.331868 1.2:-82490170 None:intergenic
CCTTATCTTCAGATCCTTGT+TGG 0.338669 1.2:+82489581 MS.gene065099:CDS
TCCAGCGATGGTTTGCGCTT+TGG 0.341411 1.2:-82490890 None:intergenic
TTTACGCCACGCCATTTCTA+AGG 0.343073 1.2:+82488223 MS.gene065099:CDS
CCACTATTACTACGCGCTTC+AGG 0.363898 1.2:-82489181 None:intergenic
CTATGCTGCATATTCACATT+TGG 0.364142 1.2:-82489278 None:intergenic
ATGAACACGACATTCAGTTT+TGG 0.374118 1.2:-82489917 None:intergenic
TGGACTCATTGAAGTTGTTA+TGG 0.376901 1.2:+82488124 MS.gene065099:CDS
TAGATTCCCTTCTGGTGATT+GGG 0.380201 1.2:+82488169 MS.gene065099:CDS
ATATCTGGAGACTCATTTGA+TGG 0.383132 1.2:-82490848 None:intergenic
TCCGTCACCTCCAATTTCAT+TGG 0.385683 1.2:-82489210 None:intergenic
CTGAATGTCGTGTTCATCAT+AGG 0.387994 1.2:+82489923 MS.gene065099:CDS
CGTAAATCATCATGGTTAAT+AGG 0.388583 1.2:-82488206 None:intergenic
CCTCTTGCTAGATTCCCTTC+TGG 0.390859 1.2:+82488161 MS.gene065099:CDS
CTGAGTTACGACAGAATTCA+TGG 0.392309 1.2:+82490610 MS.gene065099:CDS
TGCTAAAATCATACATGATC+TGG 0.404375 1.2:+82488867 MS.gene065099:CDS
CAGTATTTGAAGTCCGTCAT+TGG 0.410784 1.2:+82490097 MS.gene065099:CDS
ATTCTTCATTATGCTTTCAA+TGG 0.418087 1.2:-82489558 None:intergenic
AGCATGCTTCACCAAATCAT+TGG 0.420342 1.2:-82490130 None:intergenic
TTGGTAAAACTACCTTAATC+AGG 0.424584 1.2:+82488932 MS.gene065099:CDS
TTTCTATACGGCAGGAGGTT+CGG 0.427009 1.2:+82491709 MS.gene065099:intron
TTCCTCATGCAGGCATAGGC+AGG 0.427872 1.2:+82489237 MS.gene065099:CDS
TGCTCAAAGAGGAGTTCAAT+TGG 0.429380 1.2:+82489514 MS.gene065099:CDS
TGAGGAAGGAGGTTCTATAT+TGG 0.434005 1.2:+82488891 MS.gene065099:CDS
GGAGGTTCTATATTGGTCAT+TGG 0.436397 1.2:+82488898 MS.gene065099:CDS
GTTTCTGGAACTTCTTCCAT+TGG 0.437811 1.2:+82488064 MS.gene065099:CDS
ATCCCACTCGATCCATGAAA+TGG 0.438370 1.2:+82490256 MS.gene065099:CDS
TCAGAGGGTCTTCGGATTTG+AGG 0.438891 1.2:-82487972 None:intergenic
GATCGTTACCCAATCAGAAA+TGG 0.439746 1.2:+82487993 MS.gene065099:CDS
GTGAGGATCCATTTCTGATT+GGG 0.440382 1.2:-82488001 None:intergenic
GGTAACGATCAGAGGGTCTT+CGG 0.440923 1.2:-82487980 None:intergenic
ATATTGGTCATTGGACCTCC+TGG 0.442400 1.2:+82488907 MS.gene065099:CDS
CAATGACGGACTTCAAATAC+TGG 0.449272 1.2:-82490096 None:intergenic
TGAGAACAAATACAGGTAAC+TGG 0.450824 1.2:-82490656 None:intergenic
AGAGTAGAGTACCTTAGAAA+TGG 0.453739 1.2:-82488234 None:intergenic
GGTGAGGATCCATTTCTGAT+TGG 0.455488 1.2:-82488002 None:intergenic
GATCCTTGTTGGTGGTATAG+AGG 0.456580 1.2:+82489592 MS.gene065099:CDS
AGTATTTGAAGTCCGTCATT+GGG 0.460558 1.2:+82490098 MS.gene065099:CDS
TTGAATAGAGTGTAACTCTC+GGG 0.466591 1.2:+82489806 MS.gene065099:intron
GCTGATGCAATTCTTGCATC+CGG 0.468276 1.2:+82490585 MS.gene065099:CDS
AACCGTCAGATGCAAATCAT+TGG 0.469178 1.2:+82488808 MS.gene065099:CDS
CAATGAGTCCACCAATCTCT+TGG 0.470658 1.2:-82488112 None:intergenic
ATAGAGTACATAGTGATTCC+TGG 0.476995 1.2:+82491738 MS.gene065099:CDS
CCTGAAGCGCGTAGTAATAG+TGG 0.478310 1.2:+82489181 MS.gene065099:CDS
TTCTTTATCGTGGAGCCAAA+GGG 0.483101 1.2:-82490824 None:intergenic
GCAATGGTACCACTGTCAAT+AGG 0.485311 1.2:+82491985 MS.gene065099:CDS
TCAATAATTTCAGAACGTCT+TGG 0.487672 1.2:-82491783 None:intergenic
CAAAGAGGAGTTCAATTGGT+TGG 0.488544 1.2:+82489518 MS.gene065099:CDS
CCAACAAGGATCTGAAGATA+AGG 0.493089 1.2:-82489581 None:intergenic
GTACAAGTAGCAAAAGTGAT+GGG 0.494154 1.2:+82490522 MS.gene065099:CDS
CAATTGGTTGGAACAGCACA+TGG 0.496072 1.2:+82489530 MS.gene065099:CDS
GCTGGAAGAGATTGACGCCT+TGG 0.496312 1.2:+82490907 MS.gene065099:CDS
TATCTTCAGATCCTTGTTGG+TGG 0.497033 1.2:+82489584 MS.gene065099:CDS
ACCAAAGCGCAAACCATCGC+TGG 0.503492 1.2:+82490889 MS.gene065099:CDS
GAGTGTAACTCTCGGGGATG+AGG 0.503582 1.2:+82489813 MS.gene065099:intron
CTCTCGGGGATGAGGAAGCC+AGG 0.505259 1.2:+82489821 MS.gene065099:CDS
CAGAGAGACTGCTAGGATGC+TGG 0.505835 1.2:+82489148 MS.gene065099:intron
GTTACCTGTATTTGTTCTCA+AGG 0.506262 1.2:+82490659 MS.gene065099:CDS
ATTGGCCTTACTTGTCGTGT+TGG 0.509211 1.2:+82488826 MS.gene065099:CDS
TGCAAAAGACAATTCTAGAA+AGG 0.510028 1.2:+82489854 MS.gene065099:CDS
CTTCTTTATCGTGGAGCCAA+AGG 0.510592 1.2:-82490825 None:intergenic
GCTTGTAGTGGTGGCGGCAA+TGG 0.511537 1.2:+82491969 MS.gene065099:CDS
ATGAAATGGAGTGATAATAG+TGG 0.514888 1.2:+82490270 MS.gene065099:CDS
ATCCTCGGGCTAGAACCCTT+TGG 0.516202 1.2:+82490809 MS.gene065099:CDS
CTCGACCAACACGACAAGTA+AGG 0.517747 1.2:-82488831 None:intergenic
GTCATTGGACCTCCTGGTGT+TGG 0.524184 1.2:+82488913 MS.gene065099:CDS
TTGTATCGCCACCAAGAGAT+TGG 0.524330 1.2:+82488101 MS.gene065099:CDS
TGCATCGTATAAGTGCAATT+CGG 0.526874 1.2:+82488785 MS.gene065099:CDS
AACTTCTTCCATTGGAGATG+AGG 0.532842 1.2:+82488072 MS.gene065099:CDS
GGAAGAGATTGACGCCTTGG+AGG 0.536207 1.2:+82490910 MS.gene065099:CDS
GGGATGAGGAAGCCAGGAAA+AGG 0.537182 1.2:+82489827 MS.gene065099:CDS
CAAGGGAAGAATCTGCAACC+TGG 0.537532 1.2:-82491871 None:intergenic
ATTCTGTCGTAACTCAGAAC+CGG 0.538742 1.2:-82490604 None:intergenic
TCCAATGAAATTGGAGGTGA+CGG 0.539462 1.2:+82489209 MS.gene065099:CDS
ATTTGATGGCTTCTTTATCG+TGG 0.539478 1.2:-82490834 None:intergenic
GGCACCTTGAGAACAAATAC+AGG 0.540365 1.2:-82490663 None:intergenic
GATTCCTGGTGGAGAGGCTG+TGG 0.540843 1.2:+82491752 MS.gene065099:CDS
GGAAACAGAACTAGACTTGG+AGG 0.541505 1.2:-82491913 None:intergenic
GGCCAATGATTTGCATCTGA+CGG 0.543218 1.2:-82488810 None:intergenic
GCGTCAATCTCTTCCAGCGA+TGG 0.543519 1.2:-82490902 None:intergenic
ATGCAGGCATAGGCAGGGCG+AGG 0.546724 1.2:+82489243 MS.gene065099:CDS
TTTGCACAAGTTCAATCTGC+CGG 0.546806 1.2:-82491806 None:intergenic
TTGATCTTCACTGCACCTCA+TGG 0.546851 1.2:+82487841 MS.gene065099:CDS
TCTTCCATTGGAGATGAGGA+TGG 0.549063 1.2:+82488076 MS.gene065099:CDS
GACGGAGATGTTCCTCATGC+AGG 0.549892 1.2:+82489227 MS.gene065099:CDS
AATCATACATGATCTGGTTG+AGG 0.551401 1.2:+82488873 MS.gene065099:CDS
GATGTTCCTCATGCAGGCAT+AGG 0.555685 1.2:+82489233 MS.gene065099:CDS
GACGTTCTGAAATTATTGAC+CGG 0.556854 1.2:+82491787 MS.gene065099:CDS
CAGTTGGCTGCTGAAAAGTC+AGG 0.557070 1.2:+82491834 MS.gene065099:CDS
AGTTCCACAGCCTCTCCACC+AGG 0.563344 1.2:-82491756 None:intergenic
TTTGAATAGAGTGTAACTCT+CGG 0.564422 1.2:+82489805 MS.gene065099:intron
GGCTGCTGAAAAGTCAGGTA+CGG 0.565693 1.2:+82491839 MS.gene065099:CDS
AAGTCTGCTTGTAGTGGTGG+CGG 0.567092 1.2:+82491963 MS.gene065099:CDS
TTGAACTCCTCTTTGAGCAA+TGG 0.567809 1.2:-82489510 None:intergenic
AATTCCATCCTCATCTCCAA+TGG 0.572936 1.2:-82488080 None:intergenic
CAAGTCTTCTTGATGAACGA+TGG 0.574288 1.2:-82487908 None:intergenic
CAGGCATAGGCAGGGCGAGG+AGG 0.576115 1.2:+82489246 MS.gene065099:CDS
ATAGAAGTAACTGATGACAT+TGG 0.579181 1.2:+82490558 MS.gene065099:CDS
AGTACAAGTAGCAAAAGTGA+TGG 0.579277 1.2:+82490521 MS.gene065099:CDS
GAAAAGTCTGCTTGTAGTGG+TGG 0.579730 1.2:+82491960 MS.gene065099:CDS
TCTGATTGGGTAACGATCAG+AGG 0.580957 1.2:-82487988 None:intergenic
CATAGTGATTCCTGGTGGAG+AGG 0.582191 1.2:+82491746 MS.gene065099:CDS
TGAGTCCACCAATCTCTTGG+TGG 0.584820 1.2:-82488109 None:intergenic
TCAACAGCACACGTAAATGT+AGG 0.586604 1.2:-82489886 None:intergenic
GCGGGAAACAGAACTAGACT+TGG 0.590235 1.2:-82491916 None:intergenic
TACTTGTCGTGTTGGTCGAG+CGG 0.590539 1.2:+82488834 MS.gene065099:CDS
GATTGTGCAGAGAGACTGCT+AGG 0.591378 1.2:+82489141 MS.gene065099:intron
TTCACTGCACCTCATGGCAA+AGG 0.591521 1.2:+82487847 MS.gene065099:CDS
GATACATCCAATGAAATTGG+AGG 0.595729 1.2:+82489203 MS.gene065099:CDS
GCAAGTACCATTGCTCAAAG+AGG 0.597613 1.2:+82489503 MS.gene065099:CDS
GGTTGCAGATTCTTCCCTTG+AGG 0.597711 1.2:+82491874 MS.gene065099:CDS
TATCGCCACCAAGAGATTGG+TGG 0.601041 1.2:+82488104 MS.gene065099:CDS
ATACATGATCTGGTTGAGGA+AGG 0.605235 1.2:+82488877 MS.gene065099:CDS
ACTCCATTTCATGGATCGAG+TGG 0.607616 1.2:-82490259 None:intergenic
CAGGTACGGATCAAAACACC+AGG 0.608144 1.2:+82491853 MS.gene065099:CDS
TCAGAAAAGTCTGCTTGTAG+TGG 0.608397 1.2:+82491957 MS.gene065099:CDS
CTGATTGGGTAACGATCAGA+GGG 0.608679 1.2:-82487987 None:intergenic
AGAAAAGGGTTGTACCTCCA+AGG 0.608824 1.2:-82490924 None:intergenic
CATGATCTGGTTGAGGAAGG+AGG 0.608961 1.2:+82488880 MS.gene065099:CDS
TTGCAGGTGTACACTTGCAT+TGG 0.612087 1.2:-82490315 None:intergenic
AAGACAATTCTAGAAAGGAA+AGG 0.613874 1.2:+82489859 MS.gene065099:CDS
ATAGTGGATCTGTGATCAAG+AGG 0.617190 1.2:+82490286 MS.gene065099:CDS
TCCTCATGCAGGCATAGGCA+GGG 0.617902 1.2:+82489238 MS.gene065099:CDS
TTCATTGCAGTCCAATACCA+TGG 0.618171 1.2:+82490760 MS.gene065099:intron
TGGCGTGGCGTAAATCATCA+TGG 0.622075 1.2:-82488214 None:intergenic
ACTTGTGCAAAGCTATCAGT+TGG 0.624557 1.2:+82491818 MS.gene065099:CDS
GAAATGACCCAATCACCAGA+AGG 0.627070 1.2:-82488176 None:intergenic
CGTGTTGGTCGAGCGGTGAG+TGG 0.630353 1.2:+82488841 MS.gene065099:CDS
CTCCATTTCATGGATCGAGT+GGG 0.632603 1.2:-82490258 None:intergenic
AATAAGCCATGAAGAAACAT+CGG 0.634610 1.2:+82490164 MS.gene065099:CDS
CGACAGAATTCATGGATCCG+TGG 0.635339 1.2:+82490618 MS.gene065099:CDS
GCCCTGCCTATGCCTGCATG+AGG 0.636859 1.2:-82489239 None:intergenic
GTTGTTGTTCCTTTGCCATG+AGG 0.637346 1.2:-82487856 None:intergenic
AGCCAAAGGGTTCTAGCCCG+AGG 0.638981 1.2:-82490811 None:intergenic
GTTTCGGGTTGTGAATTCGA+CGG 0.639045 1.2:-82488023 None:intergenic
ATGAGCTATCAATACCAGAT+CGG 0.639378 1.2:-82488762 None:intergenic
AAATGACCCAATCACCAGAA+GGG 0.644980 1.2:-82488175 None:intergenic
GAAACAGAACTAGACTTGGA+GGG 0.645076 1.2:-82491912 None:intergenic
GGGTTGTGAATTCGACGGTG+AGG 0.645266 1.2:-82488018 None:intergenic
TACAAGTAGCAAAAGTGATG+GGG 0.652083 1.2:+82490523 MS.gene065099:CDS
TGAATAGAGTGTAACTCTCG+GGG 0.654334 1.2:+82489807 MS.gene065099:intron
GAACAAATACAGGTAACTGG+TGG 0.660255 1.2:-82490653 None:intergenic
AGAGTACCTTAGAAATGGCG+TGG 0.660342 1.2:-82488229 None:intergenic
CCAGAAGGGAATCTAGCAAG+AGG 0.661778 1.2:-82488161 None:intergenic
AATGCAAGTGTACACCTGCA+AGG 0.668958 1.2:+82490317 MS.gene065099:CDS
TGACGGACTTCAAATACTGG+AGG 0.672492 1.2:-82490093 None:intergenic
AAACATATCAAGCTCCGCTG+TGG 0.679973 1.2:-82488045 None:intergenic
AATAGGAAGCCTATTGACAG+TGG 0.683426 1.2:-82491994 None:intergenic
GCACCTCTATACCACCAACA+AGG 0.695466 1.2:-82489595 None:intergenic
GAGTACATAGTGATTCCTGG+TGG 0.700030 1.2:+82491741 MS.gene065099:CDS
GGTGGAATTTCGCAACACCA+CGG 0.701018 1.2:-82490635 None:intergenic
ACAGCACACGTAAATGTAGG+TGG 0.701363 1.2:-82489883 None:intergenic
TCATAGGTTAGATTCAACTG+TGG 0.703566 1.2:+82489939 MS.gene065099:CDS
TTCTGACAGAGAGTATGACG+AGG 0.719203 1.2:+82490218 MS.gene065099:CDS
TTCACAACCCGAAACCACAG+CGG 0.742134 1.2:+82488031 MS.gene065099:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTTACATTAATTAATTAAT+TGG + chr1.2:82488433-82488452 MS.gene065099:intron 10.0%
!! TAATTATTATTATGAATAAG+TGG - chr1.2:82488291-82488310 None:intergenic 10.0%
!! TTAAACTAGATAAAATAAAA+AGG - chr1.2:82489104-82489123 None:intergenic 10.0%
!!! AATTTTATTGTATTTCTATA+CGG + chr1.2:82491697-82491716 MS.gene065099:intron 10.0%
!!! CTTATTTTATTTCTTAATAA+CGG + chr1.2:82490453-82490472 MS.gene065099:intron 10.0%
!!! TTATTTTATTTCTTAATAAC+GGG + chr1.2:82490454-82490473 MS.gene065099:intron 10.0%
!! AACACAATAATAAATAATCT+AGG - chr1.2:82491651-82491670 None:intergenic 15.0%
!!! AAAACAATTTATTGTTGTTA+AGG - chr1.2:82487881-82487900 None:intergenic 15.0%
!! AAAATTCATTATAAGGCAAA+AGG - chr1.2:82490734-82490753 None:intergenic 20.0%
!! AAATTAGATACTAATTGAGT+GGG - chr1.2:82490951-82490970 None:intergenic 20.0%
!! ACCATTATAATTGATGAAAT+TGG + chr1.2:82489458-82489477 MS.gene065099:CDS 20.0%
!! AGGAACAAAAATTCATTATA+AGG - chr1.2:82490741-82490760 None:intergenic 20.0%
!! ATTATAAATCATAACCTTGA+AGG - chr1.2:82489643-82489662 None:intergenic 20.0%
!! GCAGTATTTATTTAGTTATT+TGG + chr1.2:82490030-82490049 MS.gene065099:intron 20.0%
!! GTAAAGTAAATAAAGAACAT+TGG - chr1.2:82488419-82488438 None:intergenic 20.0%
!! TCCAATTTCATCAATTATAA+TGG - chr1.2:82489462-82489481 None:intergenic 20.0%
!! TGATCTTAAAAAATGTTTAC+AGG - chr1.2:82491503-82491522 None:intergenic 20.0%
!! TGCTACAAAAAAAATTAGAT+TGG - chr1.2:82489727-82489746 None:intergenic 20.0%
!! TTAAACAATTGTGTTTGAAT+TGG + chr1.2:82491611-82491630 MS.gene065099:intron 20.0%
!!! GTAGTTTGGTTTATTATTAT+AGG + chr1.2:82488717-82488736 MS.gene065099:intron 20.0%
!!! TCAGTTTGTATTTTTAATGT+GGG + chr1.2:82488391-82488410 MS.gene065099:intron 20.0%
!!! TTTGGTTTATTATTATAGGT+TGG + chr1.2:82488721-82488740 MS.gene065099:intron 20.0%
! AAAATAAAAAGGAAACTGAC+AGG - chr1.2:82489093-82489112 None:intergenic 25.0%
! AAATATTTCACACAGAAGAT+GGG - chr1.2:82490987-82491006 None:intergenic 25.0%
! AATTGTTTATCCAAAAACAG+AGG - chr1.2:82488261-82488280 None:intergenic 25.0%
! ATAAATGCGCTAAAAAGAAA+AGG - chr1.2:82491082-82491101 None:intergenic 25.0%
! ATAACTAAGTAAATGTCGAA+AGG + chr1.2:82488659-82488678 MS.gene065099:intron 25.0%
! ATAACTCAAATTTCACAAGT+CGG - chr1.2:82491437-82491456 None:intergenic 25.0%
! ATATTCCATTATAGAAGATG+AGG - chr1.2:82489985-82490004 None:intergenic 25.0%
! ATCAATAAACATCATTAACG+TGG - chr1.2:82489779-82489798 None:intergenic 25.0%
! ATTCTTCATTATGCTTTCAA+TGG - chr1.2:82489561-82489580 None:intergenic 25.0%
! ATTGAAGTTGTTATGGATTT+AGG + chr1.2:82488131-82488150 MS.gene065099:CDS 25.0%
! GAAATTAGATACTAATTGAG+TGG - chr1.2:82490952-82490971 None:intergenic 25.0%
! TAAATATTTCACACAGAAGA+TGG - chr1.2:82490988-82491007 None:intergenic 25.0%
! TCATCAATTATAATGGTTTC+AGG - chr1.2:82489455-82489474 None:intergenic 25.0%
! TGAAAGTTACACATTAAATG+TGG - chr1.2:82491263-82491282 None:intergenic 25.0%
! TTAAAATGTTGACCTGATTA+AGG - chr1.2:82488947-82488966 None:intergenic 25.0%
!! TAAACCAAATTGTAAGTTGA+GGG + chr1.2:82491467-82491486 MS.gene065099:intron 25.0%
!! TAAGAAATTTGTTCCTTCAA+TGG - chr1.2:82490425-82490444 None:intergenic 25.0%
!! TAATGGATATAATGGTAGTT+TGG + chr1.2:82488703-82488722 MS.gene065099:intron 25.0%
!!! ATTATAGGTTGGTGATTTTT+CGG + chr1.2:82488732-82488751 MS.gene065099:intron 25.0%
!!! CAGTTTGTATTTTTAATGTG+GGG + chr1.2:82488392-82488411 MS.gene065099:intron 25.0%
!!! CTCAGTTTGTATTTTTAATG+TGG + chr1.2:82488390-82488409 MS.gene065099:intron 25.0%
!!! CTCTTATTTATTTTCCTTCA+AGG + chr1.2:82489626-82489645 MS.gene065099:intron 25.0%
!!! CTGCAAGGTAAATTATTTTT+GGG + chr1.2:82490332-82490351 MS.gene065099:intron 25.0%
!!! TTGAAGAGTAATGGATATAA+TGG + chr1.2:82488695-82488714 MS.gene065099:intron 25.0%
!!! TTTCTGATTTTTTAACTCGA+GGG + chr1.2:82491561-82491580 MS.gene065099:intron 25.0%
!!! TTTTTGTTGTTGAAGAGTAA+TGG + chr1.2:82488686-82488705 MS.gene065099:intron 25.0%
AACTGATAACATACGAGTTT+AGG - chr1.2:82488571-82488590 None:intergenic 30.0%
AATAAGCCATGAAGAAACAT+CGG + chr1.2:82490164-82490183 MS.gene065099:CDS 30.0%
AATTGACTGCTTCATCTTTA+TGG + chr1.2:82489331-82489350 MS.gene065099:intron 30.0%
ACTATTATCACTCCATTTCA+TGG - chr1.2:82490271-82490290 None:intergenic 30.0%
AGAGAATATTATCAGGATTC+AGG + chr1.2:82490370-82490389 MS.gene065099:intron 30.0%
ATAGAAGTAACTGATGACAT+TGG + chr1.2:82490558-82490577 MS.gene065099:CDS 30.0%
ATGAAATGGAGTGATAATAG+TGG + chr1.2:82490270-82490289 MS.gene065099:CDS 30.0%
ATTGAAGCAATTGTTGAAAG+AGG - chr1.2:82490704-82490723 None:intergenic 30.0%
ATTTGCAATCTAATCTTCTG+TGG + chr1.2:82489368-82489387 MS.gene065099:intron 30.0%
CACAAATGAGTATACACAAA+AGG - chr1.2:82491115-82491134 None:intergenic 30.0%
CCAAAAATAATTTACCTTGC+AGG - chr1.2:82490334-82490353 None:intergenic 30.0%
CGTAAATCATCATGGTTAAT+AGG - chr1.2:82488209-82488228 None:intergenic 30.0%
CTAAACCAAATTGTAAGTTG+AGG + chr1.2:82491466-82491485 MS.gene065099:intron 30.0%
GATCATATCACATTTAGTCT+AGG + chr1.2:82491518-82491537 MS.gene065099:intron 30.0%
GTATTCCTCATCTTCTATAA+TGG + chr1.2:82489977-82489996 MS.gene065099:intron 30.0%
TAGAAAATCTTCTCTGTTAC+AGG + chr1.2:82490066-82490085 MS.gene065099:intron 30.0%
TCAATAATTTCAGAACGTCT+TGG - chr1.2:82491786-82491805 None:intergenic 30.0%
TCATCGTCAATTTCAATATC+TGG - chr1.2:82490866-82490885 None:intergenic 30.0%
TCTAACTTATCCTGCTAAAT+TGG + chr1.2:82491187-82491206 MS.gene065099:intron 30.0%
TGCTAAAATCATACATGATC+TGG + chr1.2:82488867-82488886 MS.gene065099:CDS 30.0%
TTAAATAGATCCATCCATTC+CGG + chr1.2:82489676-82489695 MS.gene065099:intron 30.0%
TTAAATCCGATGTTTCTTCA+TGG - chr1.2:82490173-82490192 None:intergenic 30.0%
TTCCAAATAAACAAGTCACT+AGG - chr1.2:82488345-82488364 None:intergenic 30.0%
TTGGTAAAACTACCTTAATC+AGG + chr1.2:82488932-82488951 MS.gene065099:CDS 30.0%
TTTCAACAATTGCTTCAATG+TGG + chr1.2:82490705-82490724 MS.gene065099:intron 30.0%
TTTGAATAGAGTGTAACTCT+CGG + chr1.2:82489805-82489824 MS.gene065099:intron 30.0%
! AAATTTCACAAGTCGGTTTA+GGG - chr1.2:82491430-82491449 None:intergenic 30.0%
! AAGACAATTCTAGAAAGGAA+AGG + chr1.2:82489859-82489878 MS.gene065099:CDS 30.0%
! ACTTACAATTTGGTTTAGAG+AGG - chr1.2:82491464-82491483 None:intergenic 30.0%
! AGTACTAATCTCAGTCATTT+TGG + chr1.2:82489305-82489324 MS.gene065099:intron 30.0%
! CCTGCAAGGTAAATTATTTT+TGG + chr1.2:82490331-82490350 MS.gene065099:intron 30.0%
! CTTTTTACTATGTCTGTATG+TGG + chr1.2:82488972-82488991 MS.gene065099:intron 30.0%
! GGATGATTTTTCCAATGATT+TGG + chr1.2:82490119-82490138 MS.gene065099:CDS 30.0%
! TCAATCTTTGAAAGAAGGAT+GGG - chr1.2:82489703-82489722 None:intergenic 30.0%
! TCATTTTCATGTTCCATTGA+AGG + chr1.2:82490409-82490428 MS.gene065099:intron 30.0%
! TCTAAGATTAGAGTCTGTAA+AGG - chr1.2:82491389-82491408 None:intergenic 30.0%
! TGCAAAAGACAATTCTAGAA+AGG + chr1.2:82489854-82489873 MS.gene065099:CDS 30.0%
! TTATTGTATTTCTATACGGC+AGG + chr1.2:82491701-82491720 MS.gene065099:intron 30.0%
! TTCAATCTTTGAAAGAAGGA+TGG - chr1.2:82489704-82489723 None:intergenic 30.0%
! TTGGTTCAATCTTTGAAAGA+AGG - chr1.2:82489708-82489727 None:intergenic 30.0%
! TTTGGGTCTTATAGAATGAT+TGG + chr1.2:82491056-82491075 MS.gene065099:intron 30.0%
!!! GTTTCTGATTTTTTAACTCG+AGG + chr1.2:82491560-82491579 MS.gene065099:intron 30.0%
AAAGAGGTAGCAATAGCAAA+AGG - chr1.2:82490688-82490707 None:intergenic 35.0%
AAGAGGTAGCAATAGCAAAA+GGG - chr1.2:82490687-82490706 None:intergenic 35.0%
AAGGCAGTAAAAATGATCCT+CGG + chr1.2:82490794-82490813 MS.gene065099:CDS 35.0%
AATCATACATGATCTGGTTG+AGG + chr1.2:82488873-82488892 MS.gene065099:CDS 35.0%
ACATCCCTCAACTTACAATT+TGG - chr1.2:82491474-82491493 None:intergenic 35.0%
ACTTTACAAGCCAATTTAGC+AGG - chr1.2:82491200-82491219 None:intergenic 35.0%
AGAAGCTGAAGAAGATGATT+TGG - chr1.2:82487952-82487971 None:intergenic 35.0%
AGTACAAGTAGCAAAAGTGA+TGG + chr1.2:82490521-82490540 MS.gene065099:CDS 35.0%
ATAGAGTACATAGTGATTCC+TGG + chr1.2:82491738-82491757 MS.gene065099:CDS 35.0%
ATATCTGGAGACTCATTTGA+TGG - chr1.2:82490851-82490870 None:intergenic 35.0%
ATGAGCTATCAATACCAGAT+CGG - chr1.2:82488765-82488784 None:intergenic 35.0%
ATGCATCATACGTAAAAGTG+GGG - chr1.2:82488477-82488496 None:intergenic 35.0%
CACTAGCAGTTCTTAGATTT+GGG + chr1.2:82491159-82491178 MS.gene065099:intron 35.0%
CATGCATCATACGTAAAAGT+GGG - chr1.2:82488478-82488497 None:intergenic 35.0%
CGCGCTATACATATTTCATT+AGG - chr1.2:82489753-82489772 None:intergenic 35.0%
CTATGCTGCATATTCACATT+TGG - chr1.2:82489281-82489300 None:intergenic 35.0%
CTTCAAGTGCTTAGTTGTTT+GGG + chr1.2:82491039-82491058 MS.gene065099:intron 35.0%
GATACATCCAATGAAATTGG+AGG + chr1.2:82489203-82489222 MS.gene065099:CDS 35.0%
GTACAAGTAGCAAAAGTGAT+GGG + chr1.2:82490522-82490541 MS.gene065099:CDS 35.0%
GTCCAAAAAATAGGTCACTT+GGG - chr1.2:82491324-82491343 None:intergenic 35.0%
GTGGATACATCCAATGAAAT+TGG + chr1.2:82489200-82489219 MS.gene065099:CDS 35.0%
GTTACCTGTATTTGTTCTCA+AGG + chr1.2:82490659-82490678 MS.gene065099:CDS 35.0%
GTTTCTTCATGGCTTATTTC+AGG - chr1.2:82490162-82490181 None:intergenic 35.0%
TACAAGTAGCAAAAGTGATG+GGG + chr1.2:82490523-82490542 MS.gene065099:CDS 35.0%
TACCATGGCAAAAATGGTAA+AGG + chr1.2:82490775-82490794 MS.gene065099:CDS 35.0%
TCAAGTGGTCTGATATTACA+TGG + chr1.2:82491353-82491372 MS.gene065099:intron 35.0%
TCATAGGTTAGATTCAACTG+TGG + chr1.2:82489939-82489958 MS.gene065099:CDS 35.0%
TGAGAACAAATACAGGTAAC+TGG - chr1.2:82490659-82490678 None:intergenic 35.0%
TGCATCGTATAAGTGCAATT+CGG + chr1.2:82488785-82488804 MS.gene065099:CDS 35.0%
TGCTGGTAGAGAATATTATC+AGG + chr1.2:82490363-82490382 MS.gene065099:intron 35.0%
TGGAAAAATCATCCCAATGA+CGG - chr1.2:82490113-82490132 None:intergenic 35.0%
TGGACTCATTGAAGTTGTTA+TGG + chr1.2:82488124-82488143 MS.gene065099:CDS 35.0%
TGTCCAAAAAATAGGTCACT+TGG - chr1.2:82491325-82491344 None:intergenic 35.0%
TTGAATAGAGTGTAACTCTC+GGG + chr1.2:82489806-82489825 MS.gene065099:intron 35.0%
! ACAATTTGGTTTAGAGAGGT+TGG - chr1.2:82491460-82491479 None:intergenic 35.0%
! AGAGTAGAGTACCTTAGAAA+TGG - chr1.2:82488237-82488256 None:intergenic 35.0%
! AGGTAGAACTTCTTTTCTTG+CGG - chr1.2:82491938-82491957 None:intergenic 35.0%
! AGTATTTGAAGTCCGTCATT+GGG + chr1.2:82490098-82490117 MS.gene065099:CDS 35.0%
! ATGAACACGACATTCAGTTT+TGG - chr1.2:82489920-82489939 None:intergenic 35.0%
! ATTTGATGGCTTCTTTATCG+TGG - chr1.2:82490837-82490856 None:intergenic 35.0%
! CAAATTTCACAAGTCGGTTT+AGG - chr1.2:82491431-82491450 None:intergenic 35.0%
! CAATCTTTGAAAGAAGGATG+GGG - chr1.2:82489702-82489721 None:intergenic 35.0%
! TCATGGCTTATTTCAGGTAT+TGG - chr1.2:82490156-82490175 None:intergenic 35.0%
!! AGCCTAGTGACTTGTTTATT+TGG + chr1.2:82488340-82488359 MS.gene065099:intron 35.0%
!! GTTTTCTTTGAAAATGCCAC+TGG + chr1.2:82489047-82489066 MS.gene065099:intron 35.0%
!! TACCATTTTTGCCATGGTAT+TGG - chr1.2:82490774-82490793 None:intergenic 35.0%
!! TTCAACTGTGGATGCTATTT+TGG + chr1.2:82489951-82489970 MS.gene065099:CDS 35.0%
!!! TTAACTCGAGGGCTATTTTT+CGG + chr1.2:82491572-82491591 MS.gene065099:intron 35.0%
AAATGACCCAATCACCAGAA+GGG - chr1.2:82488178-82488197 None:intergenic 40.0%
AACCGTCAGATGCAAATCAT+TGG + chr1.2:82488808-82488827 MS.gene065099:CDS 40.0%
AACTTCTTCCATTGGAGATG+AGG + chr1.2:82488072-82488091 MS.gene065099:CDS 40.0%
AATAGGAAGCCTATTGACAG+TGG - chr1.2:82491997-82492016 None:intergenic 40.0%
AATTCCATCCTCATCTCCAA+TGG - chr1.2:82488083-82488102 None:intergenic 40.0%
ACTAATTGAGTGGGCAGAAA+AGG - chr1.2:82490942-82490961 None:intergenic 40.0%
ACTATGTCTGTATGTGGAAC+TGG + chr1.2:82488978-82488997 MS.gene065099:intron 40.0%
ACTTGTGCAAAGCTATCAGT+TGG + chr1.2:82491818-82491837 MS.gene065099:CDS 40.0%
AGAGTCTGTAAAGGATCTGT+TGG - chr1.2:82491380-82491399 None:intergenic 40.0%
AGCATGCTTCACCAAATCAT+TGG - chr1.2:82490133-82490152 None:intergenic 40.0%
AGGCAGTAAAAATGATCCTC+GGG + chr1.2:82490795-82490814 MS.gene065099:CDS 40.0%
ATACATGATCTGGTTGAGGA+AGG + chr1.2:82488877-82488896 MS.gene065099:CDS 40.0%
ATTCTGTCGTAACTCAGAAC+CGG - chr1.2:82490607-82490626 None:intergenic 40.0%
CAAAGAGGAGTTCAATTGGT+TGG + chr1.2:82489518-82489537 MS.gene065099:CDS 40.0%
CAAGTCTTCTTGATGAACGA+TGG - chr1.2:82487911-82487930 None:intergenic 40.0%
CCAAATCTAAGAACTGCTAG+TGG - chr1.2:82491161-82491180 None:intergenic 40.0%
CCAACAAGGATCTGAAGATA+AGG - chr1.2:82489584-82489603 None:intergenic 40.0%
CCACTAGCAGTTCTTAGATT+TGG + chr1.2:82491158-82491177 MS.gene065099:intron 40.0%
CCATGCATCATACGTAAAAG+TGG - chr1.2:82488479-82488498 None:intergenic 40.0%
CCTTATCTTCAGATCCTTGT+TGG + chr1.2:82489581-82489600 MS.gene065099:CDS 40.0%
CTAATTGAGTGGGCAGAAAA+GGG - chr1.2:82490941-82490960 None:intergenic 40.0%
CTGAATGTCGTGTTCATCAT+AGG + chr1.2:82489923-82489942 MS.gene065099:CDS 40.0%
CTGAGTTACGACAGAATTCA+TGG + chr1.2:82490610-82490629 MS.gene065099:CDS 40.0%
GAAACAGAACTAGACTTGGA+GGG - chr1.2:82491915-82491934 None:intergenic 40.0%
GAACAAATACAGGTAACTGG+TGG - chr1.2:82490656-82490675 None:intergenic 40.0%
GAGTCTGTAAAGGATCTGTT+GGG - chr1.2:82491379-82491398 None:intergenic 40.0%
GATCGTTACCCAATCAGAAA+TGG + chr1.2:82487993-82488012 MS.gene065099:CDS 40.0%
GCTTCAAGTGCTTAGTTGTT+TGG + chr1.2:82491038-82491057 MS.gene065099:intron 40.0%
GGAGGTTCTATATTGGTCAT+TGG + chr1.2:82488898-82488917 MS.gene065099:CDS 40.0%
GTAATATCAGACCACTTGAG+TGG - chr1.2:82491352-82491371 None:intergenic 40.0%
GTCCAATACCATGGCAAAAA+TGG + chr1.2:82490769-82490788 MS.gene065099:intron 40.0%
GTGAGGATCCATTTCTGATT+GGG - chr1.2:82488004-82488023 None:intergenic 40.0%
GTGGTCTGTGTCCAAAAAAT+AGG - chr1.2:82491333-82491352 None:intergenic 40.0%
TAGATTCCCTTCTGGTGATT+GGG + chr1.2:82488169-82488188 MS.gene065099:CDS 40.0%
TATCTTCAGATCCTTGTTGG+TGG + chr1.2:82489584-82489603 MS.gene065099:CDS 40.0%
TCAACAGCACACGTAAATGT+AGG - chr1.2:82489889-82489908 None:intergenic 40.0%
TCAGAAAAGTCTGCTTGTAG+TGG + chr1.2:82491957-82491976 MS.gene065099:CDS 40.0%
TCCAATGAAATTGGAGGTGA+CGG + chr1.2:82489209-82489228 MS.gene065099:CDS 40.0%
TGAATAGAGTGTAACTCTCG+GGG + chr1.2:82489807-82489826 MS.gene065099:intron 40.0%
TGAGGAAGGAGGTTCTATAT+TGG + chr1.2:82488891-82488910 MS.gene065099:CDS 40.0%
TGCTCAAAGAGGAGTTCAAT+TGG + chr1.2:82489514-82489533 MS.gene065099:CDS 40.0%
TTCATTGCAGTCCAATACCA+TGG + chr1.2:82490760-82490779 MS.gene065099:intron 40.0%
TTCTTTATCGTGGAGCCAAA+GGG - chr1.2:82490827-82490846 None:intergenic 40.0%
TTGAACTCCTCTTTGAGCAA+TGG - chr1.2:82489513-82489532 None:intergenic 40.0%
! ACTACAAGCAGACTTTTCTG+AGG - chr1.2:82491958-82491977 None:intergenic 40.0%
! ATGGTATTGGACTGCAATGA+AGG - chr1.2:82490761-82490780 None:intergenic 40.0%
! CAGTATTTGAAGTCCGTCAT+TGG + chr1.2:82490097-82490116 MS.gene065099:CDS 40.0%
! CTCTACTCTACCTCTGTTTT+TGG + chr1.2:82488248-82488267 MS.gene065099:intron 40.0%
! CTTTTGCACTTTCCTTTTCC+TGG - chr1.2:82489842-82489861 None:intergenic 40.0%
! CTTTTGGTACTTAGCCTCAA+GGG - chr1.2:82491891-82491910 None:intergenic 40.0%
! GGTAGAACTTCTTTTCTTGC+GGG - chr1.2:82491937-82491956 None:intergenic 40.0%
! TCTTTTGGTACTTAGCCTCA+AGG - chr1.2:82491892-82491911 None:intergenic 40.0%
! TTGTATTTCTATACGGCAGG+AGG + chr1.2:82491704-82491723 MS.gene065099:intron 40.0%
!! AAGGTAGTTTTACCAACACC+AGG - chr1.2:82488928-82488947 None:intergenic 40.0%
!! ATAGTGGATCTGTGATCAAG+AGG + chr1.2:82490286-82490305 MS.gene065099:CDS 40.0%
!! CAATGACGGACTTCAAATAC+TGG - chr1.2:82490099-82490118 None:intergenic 40.0%
!! CCACTTTTACGTATGATGCA+TGG + chr1.2:82488476-82488495 MS.gene065099:intron 40.0%
!! GTTTCTGGAACTTCTTCCAT+TGG + chr1.2:82488064-82488083 MS.gene065099:CDS 40.0%
!! TGCCTTTACCATTTTTGCCA+TGG - chr1.2:82490780-82490799 None:intergenic 40.0%
!!! ATTTTTGGGTTTGCATGTGC+TGG + chr1.2:82490346-82490365 MS.gene065099:intron 40.0%
!!! GACCCAAGTGACCTATTTTT+TGG + chr1.2:82491319-82491338 MS.gene065099:intron 40.0%
AAACATATCAAGCTCCGCTG+TGG - chr1.2:82488048-82488067 None:intergenic 45.0%
AATGCAAGTGTACACCTGCA+AGG + chr1.2:82490317-82490336 MS.gene065099:CDS 45.0%
ACAGAAGATGGGACTTCAAG+AGG - chr1.2:82490976-82490995 None:intergenic 45.0%
ACAGCACACGTAAATGTAGG+TGG - chr1.2:82489886-82489905 None:intergenic 45.0%
ACTCCATTTCATGGATCGAG+TGG - chr1.2:82490262-82490281 None:intergenic 45.0%
AGAAAAGGGTTGTACCTCCA+AGG - chr1.2:82490927-82490946 None:intergenic 45.0%
AGCGGAGCTTGATATGTTTC+TGG + chr1.2:82488049-82488068 MS.gene065099:CDS 45.0%
AGCTAGCTAGTAGCAGATAG+TGG - chr1.2:82488544-82488563 None:intergenic 45.0%
ATATTGGTCATTGGACCTCC+TGG + chr1.2:82488907-82488926 MS.gene065099:CDS 45.0%
ATCCCACTCGATCCATGAAA+TGG + chr1.2:82490256-82490275 MS.gene065099:CDS 45.0%
CAATGAGTCCACCAATCTCT+TGG - chr1.2:82488115-82488134 None:intergenic 45.0%
CAATTGGTTGGAACAGCACA+TGG + chr1.2:82489530-82489549 MS.gene065099:CDS 45.0%
CAGAAACAAACACAGTCCAG+TGG - chr1.2:82489066-82489085 None:intergenic 45.0%
CTAGATTCCCTTCTGGTGAT+TGG + chr1.2:82488168-82488187 MS.gene065099:CDS 45.0%
CTCCATTTCATGGATCGAGT+GGG - chr1.2:82490261-82490280 None:intergenic 45.0%
CTGATTGGGTAACGATCAGA+GGG - chr1.2:82487990-82488009 None:intergenic 45.0%
CTTCTTTATCGTGGAGCCAA+AGG - chr1.2:82490828-82490847 None:intergenic 45.0%
GAAAAGTCTGCTTGTAGTGG+TGG + chr1.2:82491960-82491979 MS.gene065099:CDS 45.0%
GAAATGACCCAATCACCAGA+AGG - chr1.2:82488179-82488198 None:intergenic 45.0%
GAGTACATAGTGATTCCTGG+TGG + chr1.2:82491741-82491760 MS.gene065099:CDS 45.0%
GCAAGTACCATTGCTCAAAG+AGG + chr1.2:82489503-82489522 MS.gene065099:CDS 45.0%
GCAATGGTACCACTGTCAAT+AGG + chr1.2:82491985-82492004 MS.gene065099:CDS 45.0%
GCTGATGCAATTCTTGCATC+CGG + chr1.2:82490585-82490604 MS.gene065099:CDS 45.0%
GGAAACAGAACTAGACTTGG+AGG - chr1.2:82491916-82491935 None:intergenic 45.0%
GGCACCTTGAGAACAAATAC+AGG - chr1.2:82490666-82490685 None:intergenic 45.0%
GGTGAGGATCCATTTCTGAT+TGG - chr1.2:82488005-82488024 None:intergenic 45.0%
TCCGTCACCTCCAATTTCAT+TGG - chr1.2:82489213-82489232 None:intergenic 45.0%
TCTGATTGGGTAACGATCAG+AGG - chr1.2:82487991-82488010 None:intergenic 45.0%
TCTTCCATTGGAGATGAGGA+TGG + chr1.2:82488076-82488095 MS.gene065099:CDS 45.0%
TTGATCTTCACTGCACCTCA+TGG + chr1.2:82487841-82487860 MS.gene065099:CDS 45.0%
TTGCAGGTGTACACTTGCAT+TGG - chr1.2:82490318-82490337 None:intergenic 45.0%
TTGTATCGCCACCAAGAGAT+TGG + chr1.2:82488101-82488120 MS.gene065099:CDS 45.0%
TTTACGCCACGCCATTTCTA+AGG + chr1.2:82488223-82488242 MS.gene065099:CDS 45.0%
TTTCTATACGGCAGGAGGTT+CGG + chr1.2:82491709-82491728 MS.gene065099:intron 45.0%
! ACTAGACTTGGAGGGTCTTT+TGG - chr1.2:82491907-82491926 None:intergenic 45.0%
! AGAGTACCTTAGAAATGGCG+TGG - chr1.2:82488232-82488251 None:intergenic 45.0%
! GGCCAATGATTTGCATCTGA+CGG - chr1.2:82488813-82488832 None:intergenic 45.0%
! GTTGTTGTTCCTTTGCCATG+AGG - chr1.2:82487859-82487878 None:intergenic 45.0%
! TTCTGACAGAGAGTATGACG+AGG + chr1.2:82490218-82490237 MS.gene065099:CDS 45.0%
! TTTCACAAGTCGGTTTAGGG+AGG - chr1.2:82491427-82491446 None:intergenic 45.0%
! TTTTCGGATGACAACCGATC+TGG + chr1.2:82488748-82488767 MS.gene065099:CDS 45.0%
!! AACGGGCACTGTTTTCTTGT+TGG + chr1.2:82490471-82490490 MS.gene065099:intron 45.0%
!! ATTGGCCTTACTTGTCGTGT+TGG + chr1.2:82488826-82488845 MS.gene065099:CDS 45.0%
!! GATCCTTGTTGGTGGTATAG+AGG + chr1.2:82489592-82489611 MS.gene065099:CDS 45.0%
!! GTAGTTTTACCAACACCAGG+AGG - chr1.2:82488925-82488944 None:intergenic 45.0%
!! GTTTCGGGTTGTGAATTCGA+CGG - chr1.2:82488026-82488045 None:intergenic 45.0%
!! TGACGGACTTCAAATACTGG+AGG - chr1.2:82490096-82490115 None:intergenic 45.0%
!!! ACTGTGGATGCTATTTTGGC+AGG + chr1.2:82489955-82489974 MS.gene065099:CDS 45.0%
AAGTCTGCTTGTAGTGGTGG+CGG + chr1.2:82491963-82491982 MS.gene065099:CDS 50.0%
ATCAAGCTCCGCTGTGGTTT+CGG - chr1.2:82488042-82488061 None:intergenic 50.0%
CAAGGGAAGAATCTGCAACC+TGG - chr1.2:82491874-82491893 None:intergenic 50.0%
CAGGTACGGATCAAAACACC+AGG + chr1.2:82491853-82491872 MS.gene065099:CDS 50.0%
CAGTTGGCTGCTGAAAAGTC+AGG + chr1.2:82491834-82491853 MS.gene065099:CDS 50.0%
CATAGTGATTCCTGGTGGAG+AGG + chr1.2:82491746-82491765 MS.gene065099:CDS 50.0%
CATGATCTGGTTGAGGAAGG+AGG + chr1.2:82488880-82488899 MS.gene065099:CDS 50.0%
CCACTATTACTACGCGCTTC+AGG - chr1.2:82489184-82489203 None:intergenic 50.0%
CCAGAAGGGAATCTAGCAAG+AGG - chr1.2:82488164-82488183 None:intergenic 50.0%
CCTCTTGCTAGATTCCCTTC+TGG + chr1.2:82488161-82488180 MS.gene065099:CDS 50.0%
CCTGAAGCGCGTAGTAATAG+TGG + chr1.2:82489181-82489200 MS.gene065099:CDS 50.0%
CGACAGAATTCATGGATCCG+TGG + chr1.2:82490618-82490637 MS.gene065099:CDS 50.0%
CTCGACCAACACGACAAGTA+AGG - chr1.2:82488834-82488853 None:intergenic 50.0%
GATGTTCCTCATGCAGGCAT+AGG + chr1.2:82489233-82489252 MS.gene065099:CDS 50.0%
GATTGTGCAGAGAGACTGCT+AGG + chr1.2:82489141-82489160 MS.gene065099:intron 50.0%
GCACCTCTATACCACCAACA+AGG - chr1.2:82489598-82489617 None:intergenic 50.0%
GCGGGAAACAGAACTAGACT+TGG - chr1.2:82491919-82491938 None:intergenic 50.0%
GGCTGCTGAAAAGTCAGGTA+CGG + chr1.2:82491839-82491858 MS.gene065099:CDS 50.0%
GGTAACGATCAGAGGGTCTT+CGG - chr1.2:82487983-82488002 None:intergenic 50.0%
GGTGGAATTTCGCAACACCA+CGG - chr1.2:82490638-82490657 None:intergenic 50.0%
GGTTGCAGATTCTTCCCTTG+AGG + chr1.2:82491874-82491893 MS.gene065099:CDS 50.0%
TATCGCCACCAAGAGATTGG+TGG + chr1.2:82488104-82488123 MS.gene065099:CDS 50.0%
TCAGAGGGTCTTCGGATTTG+AGG - chr1.2:82487975-82487994 None:intergenic 50.0%
TGAGTCCACCAATCTCTTGG+TGG - chr1.2:82488112-82488131 None:intergenic 50.0%
TGGCGTGGCGTAAATCATCA+TGG - chr1.2:82488217-82488236 None:intergenic 50.0%
TTCACAACCCGAAACCACAG+CGG + chr1.2:82488031-82488050 MS.gene065099:CDS 50.0%
TTCACTGCACCTCATGGCAA+AGG + chr1.2:82487847-82487866 MS.gene065099:CDS 50.0%
TTGGACACAGACCACTCAAG+TGG + chr1.2:82491338-82491357 MS.gene065099:intron 50.0%
! CTTTGAAAGAAGGATGGGGC+CGG - chr1.2:82489698-82489717 None:intergenic 50.0%
! TACTTGTCGTGTTGGTCGAG+CGG + chr1.2:82488834-82488853 MS.gene065099:CDS 50.0%
AAAGAAGGATGGGGCCGGAA+TGG - chr1.2:82489693-82489712 None:intergenic 55.0%
ACCAAAGCGCAAACCATCGC+TGG + chr1.2:82490889-82490908 MS.gene065099:CDS 55.0%
CAGAGAGACTGCTAGGATGC+TGG + chr1.2:82489148-82489167 MS.gene065099:intron 55.0%
GACGGAGATGTTCCTCATGC+AGG + chr1.2:82489227-82489246 MS.gene065099:CDS 55.0%
GAGTGTAACTCTCGGGGATG+AGG + chr1.2:82489813-82489832 MS.gene065099:intron 55.0%
GCGTCAATCTCTTCCAGCGA+TGG - chr1.2:82490905-82490924 None:intergenic 55.0%
GCTGGAAGAGATTGACGCCT+TGG + chr1.2:82490907-82490926 MS.gene065099:CDS 55.0%
GGAAGAGATTGACGCCTTGG+AGG + chr1.2:82490910-82490929 MS.gene065099:CDS 55.0%
GGGATGAGGAAGCCAGGAAA+AGG + chr1.2:82489827-82489846 MS.gene065099:CDS 55.0%
GGGTTGTGAATTCGACGGTG+AGG - chr1.2:82488021-82488040 None:intergenic 55.0%
GTCATTGGACCTCCTGGTGT+TGG + chr1.2:82488913-82488932 MS.gene065099:CDS 55.0%
TCAAGCTCCGCTGTGGTTTC+GGG - chr1.2:82488041-82488060 None:intergenic 55.0%
TCCTCATGCAGGCATAGGCA+GGG + chr1.2:82489238-82489257 MS.gene065099:CDS 55.0%
TTCCTCATGCAGGCATAGGC+AGG + chr1.2:82489237-82489256 MS.gene065099:CDS 55.0%
! ATCCTCGGGCTAGAACCCTT+TGG + chr1.2:82490809-82490828 MS.gene065099:CDS 55.0%
! TCCAGCGATGGTTTGCGCTT+TGG - chr1.2:82490893-82490912 None:intergenic 55.0%
AAGGATGGGGCCGGAATGGA+TGG - chr1.2:82489689-82489708 None:intergenic 60.0%
AGTTCCACAGCCTCTCCACC+AGG - chr1.2:82491759-82491778 None:intergenic 60.0%
GATTCCTGGTGGAGAGGCTG+TGG + chr1.2:82491752-82491771 MS.gene065099:CDS 60.0%
! AGCCAAAGGGTTCTAGCCCG+AGG - chr1.2:82490814-82490833 None:intergenic 60.0%
!! GCTTGTAGTGGTGGCGGCAA+TGG + chr1.2:82491969-82491988 MS.gene065099:CDS 60.0%
ATGCAGGCATAGGCAGGGCG+AGG + chr1.2:82489243-82489262 MS.gene065099:CDS 65.0%
CTCTCGGGGATGAGGAAGCC+AGG + chr1.2:82489821-82489840 MS.gene065099:CDS 65.0%
GCCCTGCCTATGCCTGCATG+AGG - chr1.2:82489242-82489261 None:intergenic 65.0%
! CGTGTTGGTCGAGCGGTGAG+TGG + chr1.2:82488841-82488860 MS.gene065099:CDS 65.0%
CAGGCATAGGCAGGGCGAGG+AGG + chr1.2:82489246-82489265 MS.gene065099:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 82487810 82492028 82487810 ID=MS.gene065099
chr1.2 mRNA 82487810 82492028 82487810 ID=MS.gene065099.t1;Parent=MS.gene065099
chr1.2 exon 82487810 82488244 82487810 ID=MS.gene065099.t1.exon1;Parent=MS.gene065099.t1
chr1.2 CDS 82487810 82488244 82487810 ID=cds.MS.gene065099.t1;Parent=MS.gene065099.t1
chr1.2 exon 82488739 82488953 82488739 ID=MS.gene065099.t1.exon2;Parent=MS.gene065099.t1
chr1.2 CDS 82488739 82488953 82488739 ID=cds.MS.gene065099.t1;Parent=MS.gene065099.t1
chr1.2 exon 82489151 82489301 82489151 ID=MS.gene065099.t1.exon3;Parent=MS.gene065099.t1
chr1.2 CDS 82489151 82489301 82489151 ID=cds.MS.gene065099.t1;Parent=MS.gene065099.t1
chr1.2 exon 82489422 82489613 82489422 ID=MS.gene065099.t1.exon4;Parent=MS.gene065099.t1
chr1.2 CDS 82489422 82489613 82489422 ID=cds.MS.gene065099.t1;Parent=MS.gene065099.t1
chr1.2 exon 82489814 82489976 82489814 ID=MS.gene065099.t1.exon5;Parent=MS.gene065099.t1
chr1.2 CDS 82489814 82489976 82489814 ID=cds.MS.gene065099.t1;Parent=MS.gene065099.t1
chr1.2 exon 82490088 82490338 82490088 ID=MS.gene065099.t1.exon6;Parent=MS.gene065099.t1
chr1.2 CDS 82490088 82490338 82490088 ID=cds.MS.gene065099.t1;Parent=MS.gene065099.t1
chr1.2 exon 82490504 82490680 82490504 ID=MS.gene065099.t1.exon7;Parent=MS.gene065099.t1
chr1.2 CDS 82490504 82490680 82490504 ID=cds.MS.gene065099.t1;Parent=MS.gene065099.t1
chr1.2 exon 82490770 82490931 82490770 ID=MS.gene065099.t1.exon8;Parent=MS.gene065099.t1
chr1.2 CDS 82490770 82490931 82490770 ID=cds.MS.gene065099.t1;Parent=MS.gene065099.t1
chr1.2 exon 82491723 82492028 82491723 ID=MS.gene065099.t1.exon9;Parent=MS.gene065099.t1
chr1.2 CDS 82491723 82492028 82491723 ID=cds.MS.gene065099.t1;Parent=MS.gene065099.t1
Gene Sequence

>MS.gene065099

ATGAGAGCAATAAACTCGCATGTTGTCTTAATTGATCTTCACTGCACCTCATGGCAAAGGAACAACAACCTTAACAACAATAAATTGTTTTCTTCATTCCATCGTTCATCAAGAAGACTTGATAAAGCGATTCAAGCTTCCAAATCATCTTCTTCAGCTTCTCCTCAAATCCGAAGACCCTCTGATCGTTACCCAATCAGAAATGGATCCTCACCGTCGAATTCACAACCCGAAACCACAGCGGAGCTTGATATGTTTCTGGAACTTCTTCCATTGGAGATGAGGATGGAATTGTATCGCCACCAAGAGATTGGTGGACTCATTGAAGTTGTTATGGATTTAGGTAGAAAACCTCTTGCTAGATTCCCTTCTGGTGATTGGGTCATTTCTCAACGACCTATTAACCATGATGATTTACGCCACGCCATTTCTAAGGTACTCTACTCTACCTCTGTTTTTGGATAAACAATTTAATTAACCACTTATTCATAATAATAATTAATCTGTTCTAAGTTCTAACTTAATTTGCTAGCCTAGTGACTTGTTTATTTGGAAATTGTTTTGACTTTTGATTATTAAACTCAGTTTGTATTTTTAATGTGGGGTCCAATGTTCTTTATTTACTTTACATTAATTAATTAATTGGATTAAATTACTCTTTTTTCCCCACTTTTACGTATGATGCATGGTTAAATAAAATTTATACTTTTGCATTCAATTCATCAGTTTATCCACTATCTGCTACTAGCTAGCTTATGCCTAAACTCGTATGTTATCAGTTATTGCTTTTTAACAAACTGAGTTTTTGTAGTGTGTCTGTGTGCGCGCGCTAATGTGAGCTAATTGACTATAACTAAGTAAATGTCGAAAGGTTCTTTTTTGTTGTTGAAGAGTAATGGATATAATGGTAGTTTGGTTTATTATTATAGGTTGGTGATTTTTCGGATGACAACCGATCTGGTATTGATAGCTCATTGCATCGTATAAGTGCAATTCGGAACCGTCAGATGCAAATCATTGGCCTTACTTGTCGTGTTGGTCGAGCGGTGAGTGGCAGTGCTAAAATCATACATGATCTGGTTGAGGAAGGAGGTTCTATATTGGTCATTGGACCTCCTGGTGTTGGTAAAACTACCTTAATCAGGTCAACATTTTAATTTTGCTTTTTACTATGTCTGTATGTGGAACTGGTTTACTATGCAACTGATTTTCGCTTTCATTTTCTGTTTTATTTCATGTTTTCTTTGAAAATGCCACTGGACTGTGTTTGTTTCTGTTTTCCTGTCAGTTTCCTTTTTATTTTATCTAGTTTAAATGTCTGAAGAAGCTTTGATTGTGCAGAGAGACTGCTAGGATGCTGGCAGATGAGTTCCTGAAGCGCGTAGTAATAGTGGATACATCCAATGAAATTGGAGGTGACGGAGATGTTCCTCATGCAGGCATAGGCAGGGCGAGGAGGATGCAAGTTCCAAATGTGAATATGCAGCATAGTGTTAGTACTAATCTCAGTCATTTTGGCTTAATTGACTGCTTCATCTTTATGGAAATTGTTTTGATAATTTGCAATCTAATCTTCTGTGGTGCTGTTTTGTTTTGTTTATAATTTGTACAGATTATGATTGAAGCAGTTGAAAATCATATGCCTGAAACCATTATAATTGATGAAATTGGAACAGAACTTGAAGCATTAGCAGCAAGTACCATTGCTCAAAGAGGAGTTCAATTGGTTGGAACAGCACATGGAACAACCATTGAAAGCATAATGAAGAATCCTTATCTTCAGATCCTTGTTGGTGGTATAGAGGTGCAAAAGCTACTCTTATTTATTTTCCTTCAAGGTTATGATTTATAATAAAGAATTGTTAGTTAAATAGATCCATCCATTCCGGCCCCATCCTTCTTTCAAAGATTGAACCAATCTAATTTTTTTTGTAGCATATCCTAATGAAATATGTATAGCGCGTGTCCACGTTAATGATGTTTATTGATCATTTATTTGAATAGAGTGTAACTCTCGGGGATGAGGAAGCCAGGAAAAGGAAAGTGCAAAAGACAATTCTAGAAAGGAAAGGACCACCTACATTTACGTGTGCTGTTGAGATGATATCCAAAACTGAATGTCGTGTTCATCATAGGTTAGATTCAACTGTGGATGCTATTTTGGCAGGTATTCCTCATCTTCTATAATGGAATATCTTACTTCATATCTAACTGACTGATGCAGTATTTATTTAGTTATTTGGATGAGAATTTAACTAGAAAATCTTCTCTGTTACAGGAAAACCTCCAGTATTTGAAGTCCGTCATTGGGATGATTTTTCCAATGATTTGGTGAAGCATGCTCCAATACCTGAAATAAGCCATGAAGAAACATCGGATTTAAATTTAACTAACACTAATATCACAAGTTCTGACAGAGAGTATGACGAGGATGATACATACTACTATCCCACTCGATCCATGAAATGGAGTGATAATAGTGGATCTGTGATCAAGAGGAGTTCACCAATGCAAGTGTACACCTGCAAGGTAAATTATTTTTGGGTTTGCATGTGCTGGTAGAGAATATTATCAGGATTCAGGAGCTTCGATAACTGTCTCATTTTCATGTTCCATTGAAGGAACAAATTTCTTAAAACTTATCTTATTTTATTTCTTAATAACGGGCACTGTTTTCTTGTTGGATGAATTTAGATTCTTGAAGCTGATCTAGTACAAGTAGCAAAAGTGATGGGGTTTGAAGATTTAATAGAAGTAACTGATGACATTGGAACTGCTGATGCAATTCTTGCATCCGGTTCTGAGTTACGACAGAATTCATGGATCCGTGGTGTTGCGAAATTCCACCAGTTACCTGTATTTGTTCTCAAGGTGCCCTTTTGCTATTGCTACCTCTTTCAACAATTGCTTCAATGTGGTCTCCTTTTGCCTTATAATGAATTTTTGTTCCTTCATTGCAGTCCAATACCATGGCAAAAATGGTAAAGGCAGTAAAAATGATCCTCGGGCTAGAACCCTTTGGCTCCACGATAAAGAAGCCATCAAATGAGTCTCCAGATATTGAAATTGACGATGACGAACCAAAGCGCAAACCATCGCTGGAAGAGATTGACGCCTTGGAGGTACAACCCTTTTCTGCCCACTCAATTAGTATCTAATTTCTCCTCTTGAAGTCCCATCTTCTGTGTGAAATATTTATCTATGCTGTGTACTAGAAGTCTAGCAATTGCTTCAAGTGCTTAGTTGTTTGGGTCTTATAGAATGATTGGCCTTTTCTTTTTAGCGCATTTATTGATCGAATTCCTTTTGTGTATACTCATTTGTGTTGTTTATAAGTATTCTAGTTTACCACTAGCAGTTCTTAGATTTGGGTTGAATCTAACTTATCCTGCTAAATTGGCTTGTAAAGTAAAAAATGTCTTTCACTTATAGATACTTTTTAATACTATACCACATTTAATGTGTAACTTTCAACACACACTCTTAACACTCTTGACATTATAGAGCGTGACCCAAGTGACCTATTTTTTGGACACAGACCACTCAAGTGGTCTGATATTACATGGCCCAACAGATCCTTTACAGACTCTAATCTTAGAATTTGAATTATCTAACCTCCCTAAACCGACTTGTGAAATTTGAGTTATCCAACCTCTCTAAACCAAATTGTAAGTTGAGGGATGTCTCTCACCTGTAAACATTTTTTAAGATCATATCACATTTAGTCTAGGACTCTCAACAATAATCTCAGTTTCTGATTTTTTAACTCGAGGGCTATTTTTCGGATAAATTGCTTTTGTGTTAAACAATTGTGTTTGAATTGGAAAAGTCTACATTGCCTAGATTATTTATTATTGTGTTATCTATGTAATATCGACATTATGATAAATTTTATTGTATTTCTATACGGCAGGAGGTTCGGCTAGCGATAGAGTACATAGTGATTCCTGGTGGAGAGGCTGTGGAACTTCTTCCAAGACGTTCTGAAATTATTGACCGGCAGATTGAACTTGTGCAAAGCTATCAGTTGGCTGCTGAAAAGTCAGGTACGGATCAAAACACCAGGTTGCAGATTCTTCCCTTGAGGCTAAGTACCAAAAGACCCTCCAAGTCTAGTTCTGTTTCCCGCAAGAAAAGAAGTTCTACCTCAGAAAAGTCTGCTTGTAGTGGTGGCGGCAATGGTACCACTGTCAATAGGCTTCCTATTTTACCTGAATGA
Protein sequence

>MS.gene065099.t1

MRAINSHVVLIDLHCTSWQRNNNLNNNKLFSSFHRSSRRLDKAIQASKSSSSASPQIRRPSDRYPIRNGSSPSNSQPETTAELDMFLELLPLEMRMELYRHQEIGGLIEVVMDLGRKPLARFPSGDWVISQRPINHDDLRHAISKVGDFSDDNRSGIDSSLHRISAIRNRQMQIIGLTCRVGRAVSGSAKIIHDLVEEGGSILVIGPPGVGKTTLIRETARMLADEFLKRVVIVDTSNEIGGDGDVPHAGIGRARRMQVPNVNMQHSIMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGTTIESIMKNPYLQILVGGIESVTLGDEEARKRKVQKTILERKGPPTFTCAVEMISKTECRVHHRLDSTVDAILAGKPPVFEVRHWDDFSNDLVKHAPIPEISHEETSDLNLTNTNITSSDREYDEDDTYYYPTRSMKWSDNSGSVIKRSSPMQVYTCKILEADLVQVAKVMGFEDLIEVTDDIGTADAILASGSELRQNSWIRGVAKFHQLPVFVLKSNTMAKMVKAVKMILGLEPFGSTIKKPSNESPDIEIDDDEPKRKPSLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIIDRQIELVQSYQLAAEKSGTDQNTRLQILPLRLSTKRPSKSSSVSRKKRSSTSEKSACSGGGNGTTVNRLPILPE