AlfalfaGEDB | MS.gene34187

M. sativa cultivar XinJiangDaYe / MS.gene34187

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34187.t1	XP_013450807.1	98.9	92	1	0	1	92	208	299	7.20E-42	179.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34187.t1	Q9M3C6	57.1	91	38	1	1	91	185	274	1.3e-20	100.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34187.t1	A0A072U5C5	98.9	92	1	0	1	92	208	299	5.2e-42	179.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene34187	0.842791	2.08E-58	-1.69E-46
MS.gene049151	MS.gene34187	0.826026	3.40E-54	-1.69E-46
MS.gene049153	MS.gene34187	0.840867	6.72E-58	-1.69E-46
MS.gene049170	MS.gene34187	0.822973	1.78E-53	-1.69E-46
MS.gene049260	MS.gene34187	0.810013	1.42E-50	-1.69E-46
MS.gene049346	MS.gene34187	0.811377	7.22E-51	-1.69E-46
MS.gene049356	MS.gene34187	0.856117	4.00E-62	-1.69E-46
MS.gene049369	MS.gene34187	0.813568	2.40E-51	-1.69E-46
MS.gene049389	MS.gene34187	0.801376	9.27E-49	-1.69E-46
MS.gene049491	MS.gene34187	0.809804	1.58E-50	-1.69E-46
MS.gene049599	MS.gene34187	-0.803344	3.65E-49	-1.69E-46
MS.gene049661	MS.gene34187	0.817124	3.88E-52	-1.69E-46
MS.gene049662	MS.gene34187	0.826279	2.96E-54	-1.69E-46
MS.gene049758	MS.gene34187	0.871906	4.78E-67	-1.69E-46
MS.gene049910	MS.gene34187	0.826933	2.07E-54	-1.69E-46
MS.gene049915	MS.gene34187	0.820327	7.27E-53	-1.69E-46
MS.gene050060	MS.gene34187	0.826543	2.56E-54	-1.69E-46
MS.gene050128	MS.gene34187	0.865322	6.43E-65	-1.69E-46
MS.gene050301	MS.gene34187	0.876063	1.88E-68	-1.69E-46
MS.gene050397	MS.gene34187	0.828375	9.31E-55	-1.69E-46
MS.gene050404	MS.gene34187	0.824287	8.76E-54	-1.69E-46
MS.gene050406	MS.gene34187	0.824785	6.69E-54	-1.69E-46
MS.gene050426	MS.gene34187	-0.823805	1.14E-53	-1.69E-46
MS.gene050432	MS.gene34187	0.811688	6.18E-51	-1.69E-46
MS.gene050464	MS.gene34187	0.82588	3.68E-54	-1.69E-46
MS.gene050529	MS.gene34187	0.842546	2.42E-58	-1.69E-46
MS.gene050642	MS.gene34187	0.827278	1.71E-54	-1.69E-46
MS.gene050670	MS.gene34187	0.851146	1.07E-60	-1.69E-46
MS.gene050971	MS.gene34187	0.834485	2.92E-56	-1.69E-46
MS.gene05105	MS.gene34187	0.833395	5.47E-56	-1.69E-46
MS.gene05119	MS.gene34187	-0.801614	8.28E-49	-1.69E-46
MS.gene051360	MS.gene34187	0.808587	2.88E-50	-1.69E-46
MS.gene051471	MS.gene34187	0.834478	2.93E-56	-1.69E-46
MS.gene051582	MS.gene34187	0.80193	7.14E-49	-1.69E-46
MS.gene051860	MS.gene34187	0.825571	4.36E-54	-1.69E-46
MS.gene051983	MS.gene34187	0.841857	3.68E-58	-1.69E-46
MS.gene052077	MS.gene34187	0.872821	2.37E-67	-1.69E-46
MS.gene052078	MS.gene34187	0.833568	4.95E-56	-1.69E-46
MS.gene052134	MS.gene34187	0.801242	9.87E-49	-1.69E-46
MS.gene052135	MS.gene34187	0.813848	2.08E-51	-1.69E-46
MS.gene052136	MS.gene34187	0.807325	5.34E-50	-1.69E-46
MS.gene052178	MS.gene34187	0.848819	4.81E-60	-1.69E-46
MS.gene052188	MS.gene34187	0.931242	5.04E-94	-1.69E-46
MS.gene052253	MS.gene34187	0.863318	2.71E-64	-1.69E-46
MS.gene052310	MS.gene34187	0.868814	4.93E-66	-1.69E-46
MS.gene052340	MS.gene34187	0.916438	1.78E-85	-1.69E-46
MS.gene052469	MS.gene34187	0.816861	4.45E-52	-1.69E-46
MS.gene052485	MS.gene34187	0.8325	9.12E-56	-1.69E-46
MS.gene053073	MS.gene34187	0.843036	1.79E-58	-1.69E-46
MS.gene05316	MS.gene34187	0.863574	2.26E-64	-1.69E-46
MS.gene053209	MS.gene34187	0.865498	5.66E-65	-1.69E-46
MS.gene053557	MS.gene34187	0.884591	1.68E-71	-1.69E-46
MS.gene053559	MS.gene34187	0.824652	7.19E-54	-1.69E-46
MS.gene053577	MS.gene34187	0.804896	1.73E-49	-1.69E-46
MS.gene053758	MS.gene34187	0.818063	2.38E-52	-1.69E-46
MS.gene053836	MS.gene34187	0.857615	1.45E-62	-1.69E-46
MS.gene053912	MS.gene34187	0.818174	2.25E-52	-1.69E-46
MS.gene053928	MS.gene34187	0.844984	5.39E-59	-1.69E-46
MS.gene054123	MS.gene34187	0.858482	7.99E-63	-1.69E-46
MS.gene054183	MS.gene34187	0.804598	2.00E-49	-1.69E-46
MS.gene054349	MS.gene34187	0.8679	9.73E-66	-1.69E-46
MS.gene054542	MS.gene34187	0.813479	2.51E-51	-1.69E-46
MS.gene054930	MS.gene34187	0.854275	1.37E-61	-1.69E-46
MS.gene054983	MS.gene34187	0.801971	7.00E-49	-1.69E-46
MS.gene055116	MS.gene34187	0.87551	2.91E-68	-1.69E-46
MS.gene055277	MS.gene34187	0.831049	2.08E-55	-1.69E-46
MS.gene055390	MS.gene34187	0.804938	1.70E-49	-1.69E-46
MS.gene055422	MS.gene34187	0.85482	9.54E-62	-1.69E-46
MS.gene055428	MS.gene34187	0.821611	3.68E-53	-1.69E-46
MS.gene05553	MS.gene34187	0.86003	2.74E-63	-1.69E-46
MS.gene055604	MS.gene34187	0.828494	8.71E-55	-1.69E-46
MS.gene055859	MS.gene34187	0.819952	8.86E-53	-1.69E-46
MS.gene056233	MS.gene34187	0.807236	5.58E-50	-1.69E-46
MS.gene056407	MS.gene34187	0.823955	1.05E-53	-1.69E-46
MS.gene056511	MS.gene34187	0.810348	1.21E-50	-1.69E-46
MS.gene056609	MS.gene34187	0.847903	8.61E-60	-1.69E-46
MS.gene056612	MS.gene34187	0.850983	1.19E-60	-1.69E-46
MS.gene056659	MS.gene34187	0.891125	5.28E-74	-1.69E-46
MS.gene056719	MS.gene34187	0.85683	2.47E-62	-1.69E-46
MS.gene056723	MS.gene34187	0.816921	4.31E-52	-1.69E-46
MS.gene056897	MS.gene34187	0.810951	8.93E-51	-1.69E-46
MS.gene056899	MS.gene34187	-0.804744	1.86E-49	-1.69E-46
MS.gene056979	MS.gene34187	0.837905	3.94E-57	-1.69E-46
MS.gene05702	MS.gene34187	0.859426	4.17E-63	-1.69E-46
MS.gene057121	MS.gene34187	0.812485	4.14E-51	-1.69E-46
MS.gene057124	MS.gene34187	0.864139	1.51E-64	-1.69E-46
MS.gene057199	MS.gene34187	0.808635	2.81E-50	-1.69E-46
MS.gene05735	MS.gene34187	0.801841	7.44E-49	-1.69E-46
MS.gene057396	MS.gene34187	0.87791	4.30E-69	-1.69E-46
MS.gene057448	MS.gene34187	0.880558	4.97E-70	-1.69E-46
MS.gene057449	MS.gene34187	0.878814	2.07E-69	-1.69E-46
MS.gene057450	MS.gene34187	0.882809	7.63E-71	-1.69E-46
MS.gene057537	MS.gene34187	0.828072	1.10E-54	-1.69E-46
MS.gene057749	MS.gene34187	0.816889	4.38E-52	-1.69E-46
MS.gene057754	MS.gene34187	0.822103	2.83E-53	-1.69E-46
MS.gene057794	MS.gene34187	0.816569	5.17E-52	-1.69E-46
MS.gene057796	MS.gene34187	0.830808	2.38E-55	-1.69E-46
MS.gene057823	MS.gene34187	0.813007	3.18E-51	-1.69E-46
MS.gene057927	MS.gene34187	0.807113	5.92E-50	-1.69E-46
MS.gene058002	MS.gene34187	0.869386	3.22E-66	-1.69E-46
MS.gene058007	MS.gene34187	0.820799	5.67E-53	-1.69E-46
MS.gene058082	MS.gene34187	0.874494	6.46E-68	-1.69E-46
MS.gene05811	MS.gene34187	0.859909	2.98E-63	-1.69E-46
MS.gene058142	MS.gene34187	0.86422	1.42E-64	-1.69E-46
MS.gene058233	MS.gene34187	0.804773	1.84E-49	-1.69E-46
MS.gene058276	MS.gene34187	0.837243	5.83E-57	-1.69E-46
MS.gene058293	MS.gene34187	0.805884	1.08E-49	-1.69E-46
MS.gene058365	MS.gene34187	0.861907	7.37E-64	-1.69E-46
MS.gene05842	MS.gene34187	0.805892	1.07E-49	-1.69E-46
MS.gene058660	MS.gene34187	0.823817	1.13E-53	-1.69E-46
MS.gene058710	MS.gene34187	0.845372	4.23E-59	-1.69E-46
MS.gene058749	MS.gene34187	0.824167	9.35E-54	-1.69E-46
MS.gene058787	MS.gene34187	0.820076	8.30E-53	-1.69E-46
MS.gene058845	MS.gene34187	0.839821	1.26E-57	-1.69E-46
MS.gene05886	MS.gene34187	0.822363	2.47E-53	-1.69E-46
MS.gene058928	MS.gene34187	0.875116	3.97E-68	-1.69E-46
MS.gene058949	MS.gene34187	0.826199	3.09E-54	-1.69E-46
MS.gene059011	MS.gene34187	0.807719	4.41E-50	-1.69E-46
MS.gene05907	MS.gene34187	0.844308	8.20E-59	-1.69E-46
MS.gene059285	MS.gene34187	0.887075	1.96E-72	-1.69E-46
MS.gene059294	MS.gene34187	0.827029	1.96E-54	-1.69E-46
MS.gene059342	MS.gene34187	0.815116	1.09E-51	-1.69E-46
MS.gene059366	MS.gene34187	0.842602	2.34E-58	-1.69E-46
MS.gene059420	MS.gene34187	0.83724	5.84E-57	-1.69E-46
MS.gene059518	MS.gene34187	0.8351	2.04E-56	-1.69E-46
MS.gene059597	MS.gene34187	0.849912	2.38E-60	-1.69E-46
MS.gene05959	MS.gene34187	0.825282	5.10E-54	-1.69E-46
MS.gene059676	MS.gene34187	0.847261	1.29E-59	-1.69E-46
MS.gene059688	MS.gene34187	0.872489	3.06E-67	-1.69E-46
MS.gene059692	MS.gene34187	0.883061	6.17E-71	-1.69E-46
MS.gene059695	MS.gene34187	0.879623	1.07E-69	-1.69E-46
MS.gene059708	MS.gene34187	0.840623	7.78E-58	-1.69E-46
MS.gene059788	MS.gene34187	0.831405	1.70E-55	-1.69E-46
MS.gene059807	MS.gene34187	0.843124	1.70E-58	-1.69E-46
MS.gene05984	MS.gene34187	0.87456	6.14E-68	-1.69E-46
MS.gene059894	MS.gene34187	0.89015	1.28E-73	-1.69E-46
MS.gene059899	MS.gene34187	0.849683	2.76E-60	-1.69E-46
MS.gene060247	MS.gene34187	0.835856	1.31E-56	-1.69E-46
MS.gene06037	MS.gene34187	0.843292	1.53E-58	-1.69E-46
MS.gene060403	MS.gene34187	0.815785	7.74E-52	-1.69E-46
MS.gene060407	MS.gene34187	0.850759	1.38E-60	-1.69E-46
MS.gene060495	MS.gene34187	0.856091	4.07E-62	-1.69E-46
MS.gene060496	MS.gene34187	0.818495	1.90E-52	-1.69E-46
MS.gene060943	MS.gene34187	0.800739	1.25E-48	-1.69E-46
MS.gene060986	MS.gene34187	0.811767	5.94E-51	-1.69E-46
MS.gene061002	MS.gene34187	0.80195	7.07E-49	-1.69E-46
MS.gene061049	MS.gene34187	0.897856	9.36E-77	-1.69E-46
MS.gene061051	MS.gene34187	-0.857354	1.73E-62	-1.69E-46
MS.gene061154	MS.gene34187	0.845468	3.99E-59	-1.69E-46
MS.gene061159	MS.gene34187	0.861247	1.17E-63	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34187.t1	MTR_6g007180	97.849	93	2	0	1	93	208	300	9.29e-62	189

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34187.t1	AT3G55250	56.044	91	39	1	1	91	185	274	8.19e-24	91.7

Find 15 sgRNAs with CRISPR-Local

Find 16 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCAATCTACGTTTGTTGCTT+CGG	0.330000	6.2:+2731483	MS.gene34187:CDS
AGAGATTCGGCGCATGGTTA+AGG	0.388940	6.2:+2731584	MS.gene34187:CDS
TCAACAGCTTCCTTTGATAG+AGG	0.406723	6.2:-2731663	None:intergenic
CTCTCATCTTCTGTCTCTAT+AGG	0.411361	6.2:-2731513	None:intergenic
GATAGAGGCTTAGCAGCATC+TGG	0.416100	6.2:-2731648	None:intergenic
GAAAGTAGAAGACGGAGGTA+TGG	0.445392	6.2:+2731617	MS.gene34187:CDS
TTCTCAACTCGAACCTCCAT+TGG	0.453422	6.2:-2731450	None:intergenic
AAAACAAGAGATTCGGCGCA+TGG	0.513137	6.2:+2731578	MS.gene34187:CDS
CTACGTTTGTTGCTTCGGAA+AGG	0.538343	6.2:+2731488	MS.gene34187:CDS
TCGGCGCATGGTTAAGGAGA+TGG	0.565322	6.2:+2731590	MS.gene34187:CDS
TGCTGCTAAGCCTCTATCAA+AGG	0.573332	6.2:+2731653	MS.gene34187:CDS
AATGGAGGTTCGAGTTGAGA+AGG	0.577559	6.2:+2731452	None:intergenic
CTATAGAGACAGAAGATGAG+AGG	0.617615	6.2:+2731514	MS.gene34187:CDS
ATGGCAGAGAAAGTAGAAGA+CGG	0.643691	6.2:+2731609	MS.gene34187:CDS
GCAGAGAAAGTAGAAGACGG+AGG	0.701413	6.2:+2731612	MS.gene34187:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TATTTTGTTTGAGAAAGTTA+AGG	-	chr6.2:2731704-2731723	None:intergenic	20.0%
	CAGTTCAAAAACAAGAGATT+CGG	+	chr6.2:2731571-2731590	MS.gene34187:CDS	30.0%
!!!	ATCTCTTGTTTTTGAACTGA+TGG	-	chr6.2:2731570-2731589	None:intergenic	30.0%
	ATGGCAGAGAAAGTAGAAGA+CGG	+	chr6.2:2731609-2731628	MS.gene34187:CDS	40.0%
	CTATAGAGACAGAAGATGAG+AGG	+	chr6.2:2731514-2731533	MS.gene34187:CDS	40.0%
	CTCTCATCTTCTGTCTCTAT+AGG	-	chr6.2:2731516-2731535	None:intergenic	40.0%
	TCAACAGCTTCCTTTGATAG+AGG	-	chr6.2:2731666-2731685	None:intergenic	40.0%
!	GCAATCTACGTTTGTTGCTT+CGG	+	chr6.2:2731483-2731502	MS.gene34187:CDS	40.0%
	AAAACAAGAGATTCGGCGCA+TGG	+	chr6.2:2731578-2731597	MS.gene34187:CDS	45.0%
	GAAAGTAGAAGACGGAGGTA+TGG	+	chr6.2:2731617-2731636	MS.gene34187:CDS	45.0%
	TGCTGCTAAGCCTCTATCAA+AGG	+	chr6.2:2731653-2731672	MS.gene34187:CDS	45.0%
!	CTACGTTTGTTGCTTCGGAA+AGG	+	chr6.2:2731488-2731507	MS.gene34187:CDS	45.0%
	AGAGATTCGGCGCATGGTTA+AGG	+	chr6.2:2731584-2731603	MS.gene34187:CDS	50.0%
	GATAGAGGCTTAGCAGCATC+TGG	-	chr6.2:2731651-2731670	None:intergenic	50.0%
	GCAGAGAAAGTAGAAGACGG+AGG	+	chr6.2:2731612-2731631	MS.gene34187:CDS	50.0%
	TCGGCGCATGGTTAAGGAGA+TGG	+	chr6.2:2731590-2731609	MS.gene34187:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	2731453	2731734	2731453	ID=MS.gene34187
chr6.2	mRNA	2731453	2731734	2731453	ID=MS.gene34187.t1;Parent=MS.gene34187
chr6.2	exon	2731453	2731734	2731453	ID=MS.gene34187.t1.exon1;Parent=MS.gene34187.t1
chr6.2	CDS	2731453	2731734	2731453	ID=cds.MS.gene34187.t1;Parent=MS.gene34187.t1

Gene Sequence	>MS.gene34187 ATGGAGGTTCGAGTTGAGAAGGCTCTTGATGCAATCTACGTTTGTTGCTTCGGAAAGGATCCTATAGAGACAGAAGATGAGAGGTTGCTGAGTACAATACTTAGTTCAGTTTTTCCATCAGTTCAAAAACAAGAGATTCGGCGCATGGTTAAGGAGATGGCAGAGAAAGTAGAAGACGGAGGTATGGATTATATTCCAGATGCTGCTAAGCCTCTATCAAAGGAAGCTGTTGAAATGCAAATGAAAGACCTTAACTTTCTCAAACAAAATAGTAACAATTAG
Protein sequence	>MS.gene34187.t1 MEVRVEKALDAIYVCCFGKDPIETEDERLLSTILSSVFPSVQKQEIRRMVKEMAEKVEDGGMDYIPDAAKPLSKEAVEMQMKDLNFLKQNSNN