Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34843.t1 | RHN60052.1 | 97.8 | 223 | 3 | 1 | 1 | 221 | 12 | 234 | 4.30E-117 | 430.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34843.t1 | Q9STY0 | 73.7 | 224 | 54 | 1 | 3 | 221 | 4 | 227 | 1.6e-91 | 337.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34843.t1 | A0A396I343 | 97.8 | 223 | 3 | 1 | 1 | 221 | 12 | 234 | 3.1e-117 | 430.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene34843 | 0.818796 | 1.63E-52 | -1.69E-46 |
| MS.gene049153 | MS.gene34843 | 0.814271 | 1.68E-51 | -1.69E-46 |
| MS.gene049346 | MS.gene34843 | 0.845924 | 3.00E-59 | -1.69E-46 |
| MS.gene049356 | MS.gene34843 | 0.816462 | 5.46E-52 | -1.69E-46 |
| MS.gene049491 | MS.gene34843 | 0.833467 | 5.24E-56 | -1.69E-46 |
| MS.gene049661 | MS.gene34843 | 0.855587 | 5.71E-62 | -1.69E-46 |
| MS.gene049662 | MS.gene34843 | 0.856333 | 3.45E-62 | -1.69E-46 |
| MS.gene049758 | MS.gene34843 | 0.853517 | 2.27E-61 | -1.69E-46 |
| MS.gene049910 | MS.gene34843 | 0.855817 | 4.89E-62 | -1.69E-46 |
| MS.gene049915 | MS.gene34843 | 0.806371 | 8.50E-50 | -1.69E-46 |
| MS.gene050076 | MS.gene34843 | 0.814001 | 1.92E-51 | -1.69E-46 |
| MS.gene050128 | MS.gene34843 | 0.832444 | 9.42E-56 | -1.69E-46 |
| MS.gene050301 | MS.gene34843 | 0.86904 | 4.17E-66 | -1.69E-46 |
| MS.gene050397 | MS.gene34843 | 0.850885 | 1.27E-60 | -1.69E-46 |
| MS.gene050404 | MS.gene34843 | 0.822508 | 2.28E-53 | -1.69E-46 |
| MS.gene050406 | MS.gene34843 | 0.842455 | 2.56E-58 | -1.69E-46 |
| MS.gene050426 | MS.gene34843 | -0.810468 | 1.14E-50 | -1.69E-46 |
| MS.gene050432 | MS.gene34843 | 0.826443 | 2.71E-54 | -1.69E-46 |
| MS.gene050464 | MS.gene34843 | 0.84631 | 2.35E-59 | -1.69E-46 |
| MS.gene050529 | MS.gene34843 | 0.848026 | 7.97E-60 | -1.69E-46 |
| MS.gene05053 | MS.gene34843 | 0.805826 | 1.11E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene34843 | 0.864483 | 1.18E-64 | -1.69E-46 |
| MS.gene05101 | MS.gene34843 | 0.84245 | 2.57E-58 | -1.69E-46 |
| MS.gene05105 | MS.gene34843 | 0.849138 | 3.92E-60 | -1.69E-46 |
| MS.gene05119 | MS.gene34843 | -0.815124 | 1.09E-51 | -1.69E-46 |
| MS.gene051471 | MS.gene34843 | 0.83992 | 1.19E-57 | -1.69E-46 |
| MS.gene051525 | MS.gene34843 | 0.80147 | 8.87E-49 | -1.69E-46 |
| MS.gene051582 | MS.gene34843 | 0.851954 | 6.34E-61 | -1.69E-46 |
| MS.gene051605 | MS.gene34843 | 0.819576 | 1.08E-52 | -1.69E-46 |
| MS.gene051860 | MS.gene34843 | 0.826591 | 2.49E-54 | -1.69E-46 |
| MS.gene051983 | MS.gene34843 | 0.819691 | 1.02E-52 | -1.69E-46 |
| MS.gene052011 | MS.gene34843 | -0.823877 | 1.09E-53 | -1.69E-46 |
| MS.gene052077 | MS.gene34843 | 0.86062 | 1.82E-63 | -1.69E-46 |
| MS.gene052078 | MS.gene34843 | 0.839611 | 1.43E-57 | -1.69E-46 |
| MS.gene052135 | MS.gene34843 | 0.80316 | 3.98E-49 | -1.69E-46 |
| MS.gene052178 | MS.gene34843 | 0.841645 | 4.19E-58 | -1.69E-46 |
| MS.gene052188 | MS.gene34843 | 0.884895 | 1.30E-71 | -1.69E-46 |
| MS.gene052253 | MS.gene34843 | 0.868865 | 4.75E-66 | -1.69E-46 |
| MS.gene052255 | MS.gene34843 | 0.805152 | 1.53E-49 | -1.69E-46 |
| MS.gene052310 | MS.gene34843 | 0.875512 | 2.91E-68 | -1.69E-46 |
| MS.gene052322 | MS.gene34843 | 0.814632 | 1.40E-51 | -1.69E-46 |
| MS.gene052340 | MS.gene34843 | 0.890519 | 9.15E-74 | -1.69E-46 |
| MS.gene052421 | MS.gene34843 | 0.814407 | 1.56E-51 | -1.69E-46 |
| MS.gene052481 | MS.gene34843 | 0.812932 | 3.30E-51 | -1.69E-46 |
| MS.gene052485 | MS.gene34843 | 0.841135 | 5.71E-58 | -1.69E-46 |
| MS.gene053073 | MS.gene34843 | 0.841681 | 4.10E-58 | -1.69E-46 |
| MS.gene053103 | MS.gene34843 | 0.809104 | 2.23E-50 | -1.69E-46 |
| MS.gene05316 | MS.gene34843 | 0.84673 | 1.81E-59 | -1.69E-46 |
| MS.gene053209 | MS.gene34843 | 0.85214 | 5.61E-61 | -1.69E-46 |
| MS.gene053557 | MS.gene34843 | 0.859409 | 4.22E-63 | -1.69E-46 |
| MS.gene053758 | MS.gene34843 | 0.818267 | 2.14E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene34843 | 0.877472 | 6.12E-69 | -1.69E-46 |
| MS.gene053912 | MS.gene34843 | 0.800968 | 1.12E-48 | -1.69E-46 |
| MS.gene053928 | MS.gene34843 | 0.834457 | 2.96E-56 | -1.69E-46 |
| MS.gene054010 | MS.gene34843 | 0.819694 | 1.02E-52 | -1.69E-46 |
| MS.gene054011 | MS.gene34843 | 0.82049 | 6.67E-53 | -1.69E-46 |
| MS.gene054012 | MS.gene34843 | 0.81232 | 4.50E-51 | -1.69E-46 |
| MS.gene054013 | MS.gene34843 | 0.806068 | 9.84E-50 | -1.69E-46 |
| MS.gene054123 | MS.gene34843 | 0.82011 | 8.15E-53 | -1.69E-46 |
| MS.gene054183 | MS.gene34843 | 0.83371 | 4.56E-56 | -1.69E-46 |
| MS.gene054349 | MS.gene34843 | 0.858716 | 6.81E-63 | -1.69E-46 |
| MS.gene054473 | MS.gene34843 | 0.823141 | 1.63E-53 | -1.69E-46 |
| MS.gene054542 | MS.gene34843 | 0.802154 | 6.42E-49 | -1.69E-46 |
| MS.gene054918 | MS.gene34843 | 0.847173 | 1.37E-59 | -1.69E-46 |
| MS.gene054930 | MS.gene34843 | 0.843191 | 1.63E-58 | -1.69E-46 |
| MS.gene054983 | MS.gene34843 | 0.818197 | 2.22E-52 | -1.69E-46 |
| MS.gene055116 | MS.gene34843 | 0.906942 | 8.64E-81 | -1.69E-46 |
| MS.gene055277 | MS.gene34843 | 0.864465 | 1.19E-64 | -1.69E-46 |
| MS.gene055369 | MS.gene34843 | 0.802155 | 6.42E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene34843 | 0.861131 | 1.27E-63 | -1.69E-46 |
| MS.gene055428 | MS.gene34843 | 0.862919 | 3.60E-64 | -1.69E-46 |
| MS.gene05553 | MS.gene34843 | 0.870122 | 1.85E-66 | -1.69E-46 |
| MS.gene055604 | MS.gene34843 | 0.838423 | 2.90E-57 | -1.69E-46 |
| MS.gene055712 | MS.gene34843 | 0.812411 | 4.30E-51 | -1.69E-46 |
| MS.gene055859 | MS.gene34843 | 0.811999 | 5.28E-51 | -1.69E-46 |
| MS.gene056191 | MS.gene34843 | 0.845598 | 3.68E-59 | -1.69E-46 |
| MS.gene056407 | MS.gene34843 | 0.847438 | 1.16E-59 | -1.69E-46 |
| MS.gene056511 | MS.gene34843 | 0.833934 | 4.01E-56 | -1.69E-46 |
| MS.gene056609 | MS.gene34843 | 0.811122 | 8.20E-51 | -1.69E-46 |
| MS.gene056612 | MS.gene34843 | 0.840144 | 1.04E-57 | -1.69E-46 |
| MS.gene056659 | MS.gene34843 | 0.867306 | 1.51E-65 | -1.69E-46 |
| MS.gene056723 | MS.gene34843 | 0.821406 | 4.11E-53 | -1.69E-46 |
| MS.gene056899 | MS.gene34843 | -0.839258 | 1.76E-57 | -1.69E-46 |
| MS.gene056979 | MS.gene34843 | 0.821054 | 4.95E-53 | -1.69E-46 |
| MS.gene05702 | MS.gene34843 | 0.933512 | 1.68E-95 | -1.69E-46 |
| MS.gene057121 | MS.gene34843 | 0.810501 | 1.12E-50 | -1.69E-46 |
| MS.gene057124 | MS.gene34843 | 0.835285 | 1.83E-56 | -1.69E-46 |
| MS.gene057245 | MS.gene34843 | 0.807773 | 4.29E-50 | -1.69E-46 |
| MS.gene05733 | MS.gene34843 | 0.819499 | 1.12E-52 | -1.69E-46 |
| MS.gene057396 | MS.gene34843 | 0.837863 | 4.04E-57 | -1.69E-46 |
| MS.gene057448 | MS.gene34843 | 0.848017 | 8.01E-60 | -1.69E-46 |
| MS.gene057449 | MS.gene34843 | 0.845557 | 3.77E-59 | -1.69E-46 |
| MS.gene057450 | MS.gene34843 | 0.85234 | 4.92E-61 | -1.69E-46 |
| MS.gene057749 | MS.gene34843 | 0.855279 | 7.02E-62 | -1.69E-46 |
| MS.gene057754 | MS.gene34843 | 0.813467 | 2.52E-51 | -1.69E-46 |
| MS.gene057782 | MS.gene34843 | 0.828058 | 1.11E-54 | -1.69E-46 |
| MS.gene057796 | MS.gene34843 | 0.808632 | 2.82E-50 | -1.69E-46 |
| MS.gene057823 | MS.gene34843 | 0.8405 | 8.38E-58 | -1.69E-46 |
| MS.gene057825 | MS.gene34843 | 0.854069 | 1.57E-61 | -1.69E-46 |
| MS.gene058002 | MS.gene34843 | 0.870421 | 1.48E-66 | -1.69E-46 |
| MS.gene058007 | MS.gene34843 | 0.825583 | 4.33E-54 | -1.69E-46 |
| MS.gene058082 | MS.gene34843 | 0.816718 | 4.79E-52 | -1.69E-46 |
| MS.gene05811 | MS.gene34843 | 0.841837 | 3.73E-58 | -1.69E-46 |
| MS.gene058142 | MS.gene34843 | 0.858882 | 6.07E-63 | -1.69E-46 |
| MS.gene058233 | MS.gene34843 | 0.83957 | 1.46E-57 | -1.69E-46 |
| MS.gene058276 | MS.gene34843 | 0.817954 | 2.52E-52 | -1.69E-46 |
| MS.gene058293 | MS.gene34843 | 0.800307 | 1.53E-48 | -1.69E-46 |
| MS.gene058365 | MS.gene34843 | 0.823013 | 1.74E-53 | -1.69E-46 |
| MS.gene058660 | MS.gene34843 | 0.849877 | 2.44E-60 | -1.69E-46 |
| MS.gene058710 | MS.gene34843 | 0.843223 | 1.60E-58 | -1.69E-46 |
| MS.gene058749 | MS.gene34843 | 0.810721 | 1.00E-50 | -1.69E-46 |
| MS.gene058787 | MS.gene34843 | 0.80013 | 1.66E-48 | -1.69E-46 |
| MS.gene058845 | MS.gene34843 | 0.817114 | 3.90E-52 | -1.69E-46 |
| MS.gene05886 | MS.gene34843 | 0.863493 | 2.39E-64 | -1.69E-46 |
| MS.gene058928 | MS.gene34843 | 0.860774 | 1.63E-63 | -1.69E-46 |
| MS.gene058949 | MS.gene34843 | 0.827295 | 1.69E-54 | -1.69E-46 |
| MS.gene059011 | MS.gene34843 | 0.851642 | 7.77E-61 | -1.69E-46 |
| MS.gene05907 | MS.gene34843 | 0.868582 | 5.87E-66 | -1.69E-46 |
| MS.gene059141 | MS.gene34843 | 0.819139 | 1.36E-52 | -1.69E-46 |
| MS.gene059285 | MS.gene34843 | 0.874848 | 4.90E-68 | -1.69E-46 |
| MS.gene059294 | MS.gene34843 | 0.847001 | 1.52E-59 | -1.69E-46 |
| MS.gene059366 | MS.gene34843 | 0.819144 | 1.36E-52 | -1.69E-46 |
| MS.gene059420 | MS.gene34843 | 0.857017 | 2.17E-62 | -1.69E-46 |
| MS.gene059462 | MS.gene34843 | 0.816962 | 4.22E-52 | -1.69E-46 |
| MS.gene059518 | MS.gene34843 | 0.827194 | 1.79E-54 | -1.69E-46 |
| MS.gene059597 | MS.gene34843 | 0.856214 | 3.74E-62 | -1.69E-46 |
| MS.gene059676 | MS.gene34843 | 0.839875 | 1.22E-57 | -1.69E-46 |
| MS.gene059688 | MS.gene34843 | 0.887815 | 1.02E-72 | -1.69E-46 |
| MS.gene059692 | MS.gene34843 | 0.88836 | 6.33E-73 | -1.69E-46 |
| MS.gene059695 | MS.gene34843 | 0.887826 | 1.01E-72 | -1.69E-46 |
| MS.gene059807 | MS.gene34843 | 0.827724 | 1.34E-54 | -1.69E-46 |
| MS.gene05984 | MS.gene34843 | 0.854382 | 1.28E-61 | -1.69E-46 |
| MS.gene059894 | MS.gene34843 | 0.881192 | 2.94E-70 | -1.69E-46 |
| MS.gene059974 | MS.gene34843 | 0.803412 | 3.53E-49 | -1.69E-46 |
| MS.gene060247 | MS.gene34843 | 0.81606 | 6.72E-52 | -1.69E-46 |
| MS.gene06037 | MS.gene34843 | 0.871333 | 7.40E-67 | -1.69E-46 |
| MS.gene060403 | MS.gene34843 | 0.845671 | 3.51E-59 | -1.69E-46 |
| MS.gene060407 | MS.gene34843 | 0.826533 | 2.57E-54 | -1.69E-46 |
| MS.gene060495 | MS.gene34843 | 0.827207 | 1.78E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene34843 | 0.919964 | 2.33E-87 | -1.69E-46 |
| MS.gene061051 | MS.gene34843 | -0.842127 | 3.13E-58 | -1.69E-46 |
| MS.gene061112 | MS.gene34843 | 0.80709 | 5.99E-50 | -1.69E-46 |
| MS.gene061154 | MS.gene34843 | 0.82064 | 6.16E-53 | -1.69E-46 |
| MS.gene061159 | MS.gene34843 | 0.883975 | 2.85E-71 | -1.69E-46 |
| MS.gene061265 | MS.gene34843 | 0.811055 | 8.48E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34843.t1 | MTR_0004s0440 | 85.841 | 226 | 13 | 3 | 1 | 221 | 1 | 212 | 1.87e-133 | 374 |
| MS.gene34843.t1 | MTR_1g021995 | 32.000 | 225 | 138 | 5 | 11 | 221 | 37 | 260 | 9.28e-32 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34843.t1 | AT3G47430 | 73.661 | 224 | 54 | 1 | 3 | 221 | 4 | 227 | 1.74e-116 | 331 |
| MS.gene34843.t1 | AT1G47750 | 29.915 | 234 | 147 | 6 | 3 | 221 | 16 | 247 | 5.24e-24 | 96.3 |
Find 40 sgRNAs with CRISPR-Local
Find 50 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAACCTCTTGGATATATC+AGG | 0.230932 | 4.4:+60881527 | None:intergenic |
| CTAGCAGTGCTTTCTAATTC+AGG | 0.262558 | 4.4:-60881392 | MS.gene34843:CDS |
| TTTCTTTGGTTGTCAAGAAT+TGG | 0.292472 | 4.4:-60881341 | MS.gene34843:CDS |
| CACACGCCAGTTTGCAAGCT+TGG | 0.301187 | 4.4:+60881562 | None:intergenic |
| ATGAGTTTCATATCTGCTTT+TGG | 0.310972 | 4.4:-60881290 | MS.gene34843:CDS |
| CTGGTTCTACTCTCACTTTA+AGG | 0.312353 | 4.4:-60881418 | MS.gene34843:CDS |
| TTGCAAGCTTGGAAACATAT+TGG | 0.323667 | 4.4:+60881573 | None:intergenic |
| ACTGTTTCTCTTGGTATTAG+TGG | 0.331245 | 4.4:-60881050 | MS.gene34843:CDS |
| AGAACTGGAAGGTTTCTTAC+TGG | 0.334576 | 4.4:-60881464 | MS.gene34843:CDS |
| TTTGTCCACTGTGTCATTCA+TGG | 0.336012 | 4.4:+60881649 | None:intergenic |
| GGGCTGGTTGGTATAGAAAT+TGG | 0.339600 | 4.4:-60881013 | MS.gene34843:CDS |
| TTCTCTTGGTATTAGTGGAT+TGG | 0.370396 | 4.4:-60881045 | MS.gene34843:CDS |
| TTCTTGACAACCAAAGAAAA+TGG | 0.378899 | 4.4:+60881345 | None:intergenic |
| TGCAATCACACTGTTTCTCT+TGG | 0.395141 | 4.4:-60881059 | MS.gene34843:CDS |
| GCTTTCTAATTCAGGAGAAA+TGG | 0.401761 | 4.4:-60881384 | MS.gene34843:CDS |
| GTGTGATTGCAGAAAGGGTT+TGG | 0.412924 | 4.4:+60881071 | None:intergenic |
| GAATGACACAGTGGACAAAT+TGG | 0.413926 | 4.4:-60881645 | MS.gene34843:CDS |
| AAACAGTGTGATTGCAGAAA+GGG | 0.428854 | 4.4:+60881066 | None:intergenic |
| TGATAGAATAATGAGGCTTA+TGG | 0.438357 | 4.4:-60881144 | MS.gene34843:CDS |
| ATGTTTCCAAGCTTGCAAAC+TGG | 0.447747 | 4.4:-60881568 | MS.gene34843:CDS |
| GGAATTAATTGACTTTATGA+AGG | 0.456415 | 4.4:+60880990 | None:intergenic |
| AGCAGAAAAGCATTCAGAAC+TGG | 0.460756 | 4.4:-60881479 | MS.gene34843:CDS |
| TGGTTTCTGCATGGGCTGGT+TGG | 0.463961 | 4.4:-60881025 | MS.gene34843:CDS |
| TAGTGGATTGGTTTCTGCAT+GGG | 0.486842 | 4.4:-60881033 | MS.gene34843:CDS |
| TGCAGATTTGATTATAGCAT+TGG | 0.487810 | 4.4:-60881105 | MS.gene34843:CDS |
| TGGAACTGTGGATTCAAACT+TGG | 0.495305 | 4.4:-60881321 | MS.gene34843:CDS |
| GGATTGGTTTCTGCATGGGC+TGG | 0.505965 | 4.4:-60881029 | MS.gene34843:CDS |
| TTAGTGGATTGGTTTCTGCA+TGG | 0.506709 | 4.4:-60881034 | MS.gene34843:CDS |
| TTTGTTGAATGAAGGGTTGA+AGG | 0.511768 | 4.4:-60881225 | MS.gene34843:CDS |
| TGAACCTCTTGGATATATCA+GGG | 0.540246 | 4.4:+60881528 | None:intergenic |
| GAAACAGTGTGATTGCAGAA+AGG | 0.556504 | 4.4:+60881065 | None:intergenic |
| CTTAAAGTGAGAGTAGAACC+AGG | 0.558345 | 4.4:+60881419 | None:intergenic |
| CAAGCTTGCAAACTGGCGTG+TGG | 0.589710 | 4.4:-60881561 | MS.gene34843:CDS |
| GAGAAAGCTTAGAAGTTCAG+AGG | 0.604684 | 4.4:-60881198 | MS.gene34843:CDS |
| GAAAAGCATTCAGAACTGGA+AGG | 0.628321 | 4.4:-60881475 | MS.gene34843:CDS |
| AATGCTCTTAGAAGAAACCC+TGG | 0.640685 | 4.4:-60881437 | MS.gene34843:CDS |
| TTAAAGTGAGAGTAGAACCA+GGG | 0.653037 | 4.4:+60881420 | None:intergenic |
| GTTGTCAAGAATTGGAACTG+TGG | 0.656125 | 4.4:-60881333 | MS.gene34843:CDS |
| CTCACCCTGATATATCCAAG+AGG | 0.704550 | 4.4:-60881532 | MS.gene34843:CDS |
| TTCTACCATGAATGACACAG+TGG | 0.746124 | 4.4:-60881654 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAGTGATAGAATAATG+AGG | - | chr4.4:60881500-60881519 | MS.gene34843:CDS | 20.0% |
| !!! | ATTTCATTTTGTTGAATGAA+GGG | - | chr4.4:60881419-60881438 | MS.gene34843:CDS | 20.0% |
| !! | GATTTCATTTTGTTGAATGA+AGG | - | chr4.4:60881418-60881437 | MS.gene34843:CDS | 25.0% |
| ATCCAAGAGGTTCAAAAATT+GGG | - | chr4.4:60881132-60881151 | MS.gene34843:CDS | 30.0% | |
| TATCCAAGAGGTTCAAAAAT+TGG | - | chr4.4:60881131-60881150 | MS.gene34843:CDS | 30.0% | |
| TGATAGAATAATGAGGCTTA+TGG | - | chr4.4:60881507-60881526 | MS.gene34843:CDS | 30.0% | |
| TGCAGATTTGATTATAGCAT+TGG | - | chr4.4:60881546-60881565 | MS.gene34843:CDS | 30.0% | |
| TTCTTGACAACCAAAGAAAA+TGG | + | chr4.4:60881309-60881328 | None:intergenic | 30.0% | |
| TTTCTTTGGTTGTCAAGAAT+TGG | - | chr4.4:60881310-60881329 | MS.gene34843:CDS | 30.0% | |
| ! | ATGAGTTTCATATCTGCTTT+TGG | - | chr4.4:60881361-60881380 | MS.gene34843:CDS | 30.0% |
| ! | TCTTCTTTGACCATTTTCTT+TGG | - | chr4.4:60881296-60881315 | MS.gene34843:CDS | 30.0% |
| AAAAATTGGGAAGTAGCTTC+TGG | - | chr4.4:60881145-60881164 | MS.gene34843:CDS | 35.0% | |
| AAACAGTGTGATTGCAGAAA+GGG | + | chr4.4:60881588-60881607 | None:intergenic | 35.0% | |
| ATCTTCCTAGCAAAAAGAGA+TGG | - | chr4.4:60881031-60881050 | MS.gene34843:CDS | 35.0% | |
| GCTTTCTAATTCAGGAGAAA+TGG | - | chr4.4:60881267-60881286 | MS.gene34843:CDS | 35.0% | |
| TGAACCTCTTGGATATATCA+GGG | + | chr4.4:60881126-60881145 | None:intergenic | 35.0% | |
| TTAAAGTGAGAGTAGAACCA+GGG | + | chr4.4:60881234-60881253 | None:intergenic | 35.0% | |
| TTGAACCTCTTGGATATATC+AGG | + | chr4.4:60881127-60881146 | None:intergenic | 35.0% | |
| TTGCAAGCTTGGAAACATAT+TGG | + | chr4.4:60881081-60881100 | None:intergenic | 35.0% | |
| TTTGTTGAATGAAGGGTTGA+AGG | - | chr4.4:60881426-60881445 | MS.gene34843:CDS | 35.0% | |
| ! | ACTGTTTCTCTTGGTATTAG+TGG | - | chr4.4:60881601-60881620 | MS.gene34843:CDS | 35.0% |
| ! | TTCCCAATTTTTGAACCTCT+TGG | + | chr4.4:60881137-60881156 | None:intergenic | 35.0% |
| ! | TTCTCTTGGTATTAGTGGAT+TGG | - | chr4.4:60881606-60881625 | MS.gene34843:CDS | 35.0% |
| !! | TTTCATATCTGCTTTTGGTG+AGG | - | chr4.4:60881366-60881385 | MS.gene34843:CDS | 35.0% |
| AATGCTCTTAGAAGAAACCC+TGG | - | chr4.4:60881214-60881233 | MS.gene34843:CDS | 40.0% | |
| AGAACTGGAAGGTTTCTTAC+TGG | - | chr4.4:60881187-60881206 | MS.gene34843:CDS | 40.0% | |
| ATGTTTCCAAGCTTGCAAAC+TGG | - | chr4.4:60881083-60881102 | MS.gene34843:CDS | 40.0% | |
| CTAGCAGTGCTTTCTAATTC+AGG | - | chr4.4:60881259-60881278 | MS.gene34843:CDS | 40.0% | |
| CTTAAAGTGAGAGTAGAACC+AGG | + | chr4.4:60881235-60881254 | None:intergenic | 40.0% | |
| GAAACAGTGTGATTGCAGAA+AGG | + | chr4.4:60881589-60881608 | None:intergenic | 40.0% | |
| GAATGACACAGTGGACAAAT+TGG | - | chr4.4:60881006-60881025 | MS.gene34843:CDS | 40.0% | |
| GAGAAAGCTTAGAAGTTCAG+AGG | - | chr4.4:60881453-60881472 | MS.gene34843:CDS | 40.0% | |
| GTTGTCAAGAATTGGAACTG+TGG | - | chr4.4:60881318-60881337 | MS.gene34843:CDS | 40.0% | |
| TGGAACTGTGGATTCAAACT+TGG | - | chr4.4:60881330-60881349 | MS.gene34843:CDS | 40.0% | |
| ! | CTATGCCATCTCTTTTTGCT+AGG | + | chr4.4:60881039-60881058 | None:intergenic | 40.0% |
| ! | TGCAATCACACTGTTTCTCT+TGG | - | chr4.4:60881592-60881611 | MS.gene34843:CDS | 40.0% |
| !! | AGCAGAAAAGCATTCAGAAC+TGG | - | chr4.4:60881172-60881191 | MS.gene34843:CDS | 40.0% |
| !! | CTGGTTCTACTCTCACTTTA+AGG | - | chr4.4:60881233-60881252 | MS.gene34843:CDS | 40.0% |
| !! | GAAAAGCATTCAGAACTGGA+AGG | - | chr4.4:60881176-60881195 | MS.gene34843:CDS | 40.0% |
| !! | TAGTGGATTGGTTTCTGCAT+GGG | - | chr4.4:60881618-60881637 | MS.gene34843:CDS | 40.0% |
| !! | TTAGTGGATTGGTTTCTGCA+TGG | - | chr4.4:60881617-60881636 | MS.gene34843:CDS | 40.0% |
| CTCACCCTGATATATCCAAG+AGG | - | chr4.4:60881119-60881138 | MS.gene34843:CDS | 45.0% | |
| GTGTGATTGCAGAAAGGGTT+TGG | + | chr4.4:60881583-60881602 | None:intergenic | 45.0% | |
| !! | GGGCTGGTTGGTATAGAAAT+TGG | - | chr4.4:60881638-60881657 | MS.gene34843:CDS | 45.0% |
| !! | ATCTGCTTTTGGTGAGGCTG+TGG | - | chr4.4:60881372-60881391 | MS.gene34843:CDS | 50.0% |
| !! | TCTGCTTTTGGTGAGGCTGT+GGG | - | chr4.4:60881373-60881392 | MS.gene34843:CDS | 50.0% |
| CAAGCTTGCAAACTGGCGTG+TGG | - | chr4.4:60881090-60881109 | MS.gene34843:CDS | 55.0% | |
| CACACGCCAGTTTGCAAGCT+TGG | + | chr4.4:60881092-60881111 | None:intergenic | 55.0% | |
| !! | GGATTGGTTTCTGCATGGGC+TGG | - | chr4.4:60881622-60881641 | MS.gene34843:CDS | 55.0% |
| !! | TGGTTTCTGCATGGGCTGGT+TGG | - | chr4.4:60881626-60881645 | MS.gene34843:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 60881004 | 60881669 | 60881004 | ID=MS.gene34843 |
| chr4.4 | mRNA | 60881004 | 60881669 | 60881004 | ID=MS.gene34843.t1;Parent=MS.gene34843 |
| chr4.4 | exon | 60881004 | 60881669 | 60881004 | ID=MS.gene34843.t1.exon1;Parent=MS.gene34843.t1 |
| chr4.4 | CDS | 60881004 | 60881669 | 60881004 | ID=cds.MS.gene34843.t1;Parent=MS.gene34843.t1 |
| Gene Sequence |
| Protein sequence |
