Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43413.t1 | XP_003610592.2 | 96.9 | 351 | 11 | 0 | 1 | 351 | 1 | 351 | 3.60E-182 | 647.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43413.t1 | Q8LBL1 | 51.7 | 352 | 165 | 1 | 1 | 347 | 1 | 352 | 6.1e-90 | 332.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43413.t1 | G7JMW6 | 96.9 | 351 | 11 | 0 | 1 | 351 | 1 | 351 | 2.6e-182 | 647.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene43413 | 0.834163 | 3.51E-56 | -1.69E-46 |
| MS.gene049171 | MS.gene43413 | 0.804906 | 1.73E-49 | -1.69E-46 |
| MS.gene049217 | MS.gene43413 | 0.813814 | 2.12E-51 | -1.69E-46 |
| MS.gene049222 | MS.gene43413 | 0.812549 | 4.01E-51 | -1.69E-46 |
| MS.gene049356 | MS.gene43413 | 0.81969 | 1.02E-52 | -1.69E-46 |
| MS.gene049369 | MS.gene43413 | 0.81145 | 6.96E-51 | -1.69E-46 |
| MS.gene049396 | MS.gene43413 | 0.822174 | 2.73E-53 | -1.69E-46 |
| MS.gene049427 | MS.gene43413 | 0.815992 | 6.96E-52 | -1.69E-46 |
| MS.gene049488 | MS.gene43413 | 0.821686 | 3.54E-53 | -1.69E-46 |
| MS.gene049609 | MS.gene43413 | 0.889354 | 2.61E-73 | -1.69E-46 |
| MS.gene049633 | MS.gene43413 | 0.824678 | 7.09E-54 | -1.69E-46 |
| MS.gene049661 | MS.gene43413 | 0.822718 | 2.04E-53 | -1.69E-46 |
| MS.gene049662 | MS.gene43413 | 0.819597 | 1.07E-52 | -1.69E-46 |
| MS.gene049805 | MS.gene43413 | 0.854475 | 1.20E-61 | -1.69E-46 |
| MS.gene050397 | MS.gene43413 | 0.828681 | 7.85E-55 | -1.69E-46 |
| MS.gene050464 | MS.gene43413 | 0.80546 | 1.32E-49 | -1.69E-46 |
| MS.gene050529 | MS.gene43413 | 0.815159 | 1.07E-51 | -1.69E-46 |
| MS.gene050538 | MS.gene43413 | 0.807648 | 4.56E-50 | -1.69E-46 |
| MS.gene050593 | MS.gene43413 | 0.891063 | 5.59E-74 | -1.69E-46 |
| MS.gene050670 | MS.gene43413 | 0.877237 | 7.38E-69 | -1.69E-46 |
| MS.gene050747 | MS.gene43413 | 0.848285 | 6.76E-60 | -1.69E-46 |
| MS.gene050772 | MS.gene43413 | 0.867696 | 1.13E-65 | -1.69E-46 |
| MS.gene05080 | MS.gene43413 | 0.832198 | 1.08E-55 | -1.69E-46 |
| MS.gene05081 | MS.gene43413 | 0.821816 | 3.30E-53 | -1.69E-46 |
| MS.gene050950 | MS.gene43413 | 0.842471 | 2.53E-58 | -1.69E-46 |
| MS.gene05105 | MS.gene43413 | 0.897372 | 1.50E-76 | -1.69E-46 |
| MS.gene051387 | MS.gene43413 | 0.826894 | 2.11E-54 | -1.69E-46 |
| MS.gene051525 | MS.gene43413 | 0.840204 | 1.00E-57 | -1.69E-46 |
| MS.gene051666 | MS.gene43413 | 0.833956 | 3.96E-56 | -1.69E-46 |
| MS.gene051694 | MS.gene43413 | 0.801766 | 7.71E-49 | -1.69E-46 |
| MS.gene051734 | MS.gene43413 | 0.81347 | 2.52E-51 | -1.69E-46 |
| MS.gene051838 | MS.gene43413 | 0.845239 | 4.60E-59 | -1.69E-46 |
| MS.gene051858 | MS.gene43413 | 0.863857 | 1.85E-64 | -1.69E-46 |
| MS.gene051874 | MS.gene43413 | 0.822381 | 2.44E-53 | -1.69E-46 |
| MS.gene052011 | MS.gene43413 | -0.80684 | 6.77E-50 | -1.69E-46 |
| MS.gene052134 | MS.gene43413 | 0.824462 | 7.97E-54 | -1.69E-46 |
| MS.gene052135 | MS.gene43413 | 0.816182 | 6.31E-52 | -1.69E-46 |
| MS.gene052136 | MS.gene43413 | 0.832218 | 1.07E-55 | -1.69E-46 |
| MS.gene052188 | MS.gene43413 | 0.831784 | 1.37E-55 | -1.69E-46 |
| MS.gene052253 | MS.gene43413 | 0.827553 | 1.47E-54 | -1.69E-46 |
| MS.gene052310 | MS.gene43413 | 0.833244 | 5.96E-56 | -1.69E-46 |
| MS.gene052322 | MS.gene43413 | 0.80827 | 3.36E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene43413 | 0.804687 | 1.92E-49 | -1.69E-46 |
| MS.gene052346 | MS.gene43413 | 0.851378 | 9.23E-61 | -1.69E-46 |
| MS.gene05240 | MS.gene43413 | -0.823891 | 1.08E-53 | -1.69E-46 |
| MS.gene052414 | MS.gene43413 | 0.844146 | 9.06E-59 | -1.69E-46 |
| MS.gene052421 | MS.gene43413 | 0.855804 | 4.94E-62 | -1.69E-46 |
| MS.gene052481 | MS.gene43413 | 0.861261 | 1.16E-63 | -1.69E-46 |
| MS.gene052484 | MS.gene43413 | 0.851006 | 1.18E-60 | -1.69E-46 |
| MS.gene052485 | MS.gene43413 | 0.823884 | 1.09E-53 | -1.69E-46 |
| MS.gene052501 | MS.gene43413 | 0.860684 | 1.74E-63 | -1.69E-46 |
| MS.gene052503 | MS.gene43413 | 0.825404 | 4.77E-54 | -1.69E-46 |
| MS.gene052505 | MS.gene43413 | 0.872808 | 2.39E-67 | -1.69E-46 |
| MS.gene052506 | MS.gene43413 | 0.802636 | 5.11E-49 | -1.69E-46 |
| MS.gene052615 | MS.gene43413 | 0.839103 | 1.94E-57 | -1.69E-46 |
| MS.gene052822 | MS.gene43413 | 0.80216 | 6.40E-49 | -1.69E-46 |
| MS.gene052823 | MS.gene43413 | 0.8181 | 2.34E-52 | -1.69E-46 |
| MS.gene052825 | MS.gene43413 | 0.812921 | 3.32E-51 | -1.69E-46 |
| MS.gene052870 | MS.gene43413 | 0.801307 | 9.58E-49 | -1.69E-46 |
| MS.gene052872 | MS.gene43413 | 0.803882 | 2.82E-49 | -1.69E-46 |
| MS.gene052982 | MS.gene43413 | 0.8422 | 2.99E-58 | -1.69E-46 |
| MS.gene053009 | MS.gene43413 | 0.800239 | 1.58E-48 | -1.69E-46 |
| MS.gene053103 | MS.gene43413 | 0.806439 | 8.22E-50 | -1.69E-46 |
| MS.gene053104 | MS.gene43413 | 0.810075 | 1.38E-50 | -1.69E-46 |
| MS.gene053203 | MS.gene43413 | 0.804892 | 1.74E-49 | -1.69E-46 |
| MS.gene053207 | MS.gene43413 | 0.835405 | 1.71E-56 | -1.69E-46 |
| MS.gene053209 | MS.gene43413 | 0.837787 | 4.23E-57 | -1.69E-46 |
| MS.gene053213 | MS.gene43413 | 0.823801 | 1.14E-53 | -1.69E-46 |
| MS.gene053286 | MS.gene43413 | 0.804855 | 1.77E-49 | -1.69E-46 |
| MS.gene053449 | MS.gene43413 | 0.846375 | 2.26E-59 | -1.69E-46 |
| MS.gene053574 | MS.gene43413 | 0.867208 | 1.62E-65 | -1.69E-46 |
| MS.gene053632 | MS.gene43413 | 0.81312 | 3.01E-51 | -1.69E-46 |
| MS.gene053758 | MS.gene43413 | 0.826692 | 2.36E-54 | -1.69E-46 |
| MS.gene053824 | MS.gene43413 | 0.827738 | 1.33E-54 | -1.69E-46 |
| MS.gene053912 | MS.gene43413 | 0.865085 | 7.62E-65 | -1.69E-46 |
| MS.gene053916 | MS.gene43413 | 0.813374 | 2.64E-51 | -1.69E-46 |
| MS.gene054642 | MS.gene43413 | 0.804587 | 2.01E-49 | -1.69E-46 |
| MS.gene054884 | MS.gene43413 | -0.82464 | 7.23E-54 | -1.69E-46 |
| MS.gene054927 | MS.gene43413 | 0.849475 | 3.16E-60 | -1.69E-46 |
| MS.gene05494 | MS.gene43413 | 0.810416 | 1.17E-50 | -1.69E-46 |
| MS.gene05505 | MS.gene43413 | 0.862184 | 6.07E-64 | -1.69E-46 |
| MS.gene055116 | MS.gene43413 | 0.868476 | 6.35E-66 | -1.69E-46 |
| MS.gene055206 | MS.gene43413 | 0.852348 | 4.90E-61 | -1.69E-46 |
| MS.gene055224 | MS.gene43413 | 0.801272 | 9.74E-49 | -1.69E-46 |
| MS.gene055289 | MS.gene43413 | 0.870553 | 1.34E-66 | -1.69E-46 |
| MS.gene055502 | MS.gene43413 | 0.801003 | 1.11E-48 | -1.69E-46 |
| MS.gene055577 | MS.gene43413 | 0.811767 | 5.94E-51 | -1.69E-46 |
| MS.gene055722 | MS.gene43413 | 0.874282 | 7.63E-68 | -1.69E-46 |
| MS.gene055741 | MS.gene43413 | 0.817145 | 3.84E-52 | -1.69E-46 |
| MS.gene055744 | MS.gene43413 | 0.81986 | 9.30E-53 | -1.69E-46 |
| MS.gene055909 | MS.gene43413 | 0.806727 | 7.15E-50 | -1.69E-46 |
| MS.gene055911 | MS.gene43413 | 0.805969 | 1.03E-49 | -1.69E-46 |
| MS.gene05592 | MS.gene43413 | 0.833108 | 6.44E-56 | -1.69E-46 |
| MS.gene055941 | MS.gene43413 | 0.820797 | 5.67E-53 | -1.69E-46 |
| MS.gene056083 | MS.gene43413 | 0.801258 | 9.80E-49 | -1.69E-46 |
| MS.gene056166 | MS.gene43413 | 0.824724 | 6.91E-54 | -1.69E-46 |
| MS.gene056191 | MS.gene43413 | 0.801774 | 7.68E-49 | -1.69E-46 |
| MS.gene056422 | MS.gene43413 | 0.822788 | 1.96E-53 | -1.69E-46 |
| MS.gene056448 | MS.gene43413 | 0.835415 | 1.70E-56 | -1.69E-46 |
| MS.gene056511 | MS.gene43413 | 0.902387 | 1.02E-78 | -1.69E-46 |
| MS.gene056877 | MS.gene43413 | 0.8149 | 1.22E-51 | -1.69E-46 |
| MS.gene056946 | MS.gene43413 | 0.804026 | 2.63E-49 | -1.69E-46 |
| MS.gene057048 | MS.gene43413 | 0.804344 | 2.26E-49 | -1.69E-46 |
| MS.gene057076 | MS.gene43413 | 0.879807 | 9.22E-70 | -1.69E-46 |
| MS.gene057124 | MS.gene43413 | 0.862264 | 5.73E-64 | -1.69E-46 |
| MS.gene057129 | MS.gene43413 | 0.804629 | 1.97E-49 | -1.69E-46 |
| MS.gene057146 | MS.gene43413 | 0.847636 | 1.02E-59 | -1.69E-46 |
| MS.gene057310 | MS.gene43413 | 0.824288 | 8.75E-54 | -1.69E-46 |
| MS.gene057331 | MS.gene43413 | 0.843615 | 1.26E-58 | -1.69E-46 |
| MS.gene057416 | MS.gene43413 | 0.845234 | 4.61E-59 | -1.69E-46 |
| MS.gene057658 | MS.gene43413 | 0.802901 | 4.50E-49 | -1.69E-46 |
| MS.gene057734 | MS.gene43413 | 0.843501 | 1.35E-58 | -1.69E-46 |
| MS.gene057749 | MS.gene43413 | 0.830192 | 3.37E-55 | -1.69E-46 |
| MS.gene057823 | MS.gene43413 | 0.832941 | 7.09E-56 | -1.69E-46 |
| MS.gene057856 | MS.gene43413 | 0.831382 | 1.72E-55 | -1.69E-46 |
| MS.gene058006 | MS.gene43413 | 0.809559 | 1.78E-50 | -1.69E-46 |
| MS.gene058007 | MS.gene43413 | 0.814433 | 1.54E-51 | -1.69E-46 |
| MS.gene058019 | MS.gene43413 | 0.819814 | 9.53E-53 | -1.69E-46 |
| MS.gene058120 | MS.gene43413 | 0.801355 | 9.36E-49 | -1.69E-46 |
| MS.gene058130 | MS.gene43413 | 0.830997 | 2.14E-55 | -1.69E-46 |
| MS.gene058233 | MS.gene43413 | 0.801714 | 7.90E-49 | -1.69E-46 |
| MS.gene058338 | MS.gene43413 | 0.833437 | 5.34E-56 | -1.69E-46 |
| MS.gene058376 | MS.gene43413 | 0.827557 | 1.47E-54 | -1.69E-46 |
| MS.gene05837 | MS.gene43413 | 0.819907 | 9.08E-53 | -1.69E-46 |
| MS.gene058419 | MS.gene43413 | 0.821103 | 4.82E-53 | -1.69E-46 |
| MS.gene058444 | MS.gene43413 | 0.839777 | 1.29E-57 | -1.69E-46 |
| MS.gene058544 | MS.gene43413 | 0.801581 | 8.42E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene43413 | 0.810717 | 1.00E-50 | -1.69E-46 |
| MS.gene058700 | MS.gene43413 | 0.833773 | 4.40E-56 | -1.69E-46 |
| MS.gene058723 | MS.gene43413 | 0.808765 | 2.64E-50 | -1.69E-46 |
| MS.gene058838 | MS.gene43413 | 0.831517 | 1.60E-55 | -1.69E-46 |
| MS.gene05883 | MS.gene43413 | 0.852589 | 4.18E-61 | -1.69E-46 |
| MS.gene05886 | MS.gene43413 | 0.808966 | 2.39E-50 | -1.69E-46 |
| MS.gene058928 | MS.gene43413 | 0.836637 | 8.33E-57 | -1.69E-46 |
| MS.gene059023 | MS.gene43413 | 0.816696 | 4.84E-52 | -1.69E-46 |
| MS.gene05913 | MS.gene43413 | 0.808168 | 3.54E-50 | -1.69E-46 |
| MS.gene059141 | MS.gene43413 | 0.81245 | 4.21E-51 | -1.69E-46 |
| MS.gene05934 | MS.gene43413 | 0.837786 | 4.23E-57 | -1.69E-46 |
| MS.gene059366 | MS.gene43413 | 0.826367 | 2.82E-54 | -1.69E-46 |
| MS.gene059420 | MS.gene43413 | 0.82802 | 1.13E-54 | -1.69E-46 |
| MS.gene059455 | MS.gene43413 | 0.826328 | 2.88E-54 | -1.69E-46 |
| MS.gene059536 | MS.gene43413 | 0.845529 | 3.84E-59 | -1.69E-46 |
| MS.gene059676 | MS.gene43413 | 0.8116 | 6.46E-51 | -1.69E-46 |
| MS.gene059688 | MS.gene43413 | 0.866166 | 3.48E-65 | -1.69E-46 |
| MS.gene059692 | MS.gene43413 | 0.843383 | 1.45E-58 | -1.69E-46 |
| MS.gene059695 | MS.gene43413 | 0.842924 | 1.92E-58 | -1.69E-46 |
| MS.gene059711 | MS.gene43413 | 0.809172 | 2.16E-50 | -1.69E-46 |
| MS.gene059718 | MS.gene43413 | 0.825706 | 4.05E-54 | -1.69E-46 |
| MS.gene059807 | MS.gene43413 | 0.808763 | 2.64E-50 | -1.69E-46 |
| MS.gene059902 | MS.gene43413 | 0.865945 | 4.09E-65 | -1.69E-46 |
| MS.gene060403 | MS.gene43413 | 0.849811 | 2.54E-60 | -1.69E-46 |
| MS.gene060469 | MS.gene43413 | 0.803467 | 3.44E-49 | -1.69E-46 |
| MS.gene060804 | MS.gene43413 | 0.849965 | 2.30E-60 | -1.69E-46 |
| MS.gene060818 | MS.gene43413 | 0.847478 | 1.13E-59 | -1.69E-46 |
| MS.gene060835 | MS.gene43413 | 0.873232 | 1.72E-67 | -1.69E-46 |
| MS.gene060837 | MS.gene43413 | 0.864661 | 1.04E-64 | -1.69E-46 |
| MS.gene06092 | MS.gene43413 | 0.831865 | 1.31E-55 | -1.69E-46 |
| MS.gene061041 | MS.gene43413 | 0.82397 | 1.04E-53 | -1.69E-46 |
| MS.gene061154 | MS.gene43413 | 0.861324 | 1.11E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43413.t1 | MTR_4g133870 | 96.591 | 352 | 12 | 0 | 1 | 352 | 1 | 352 | 0.0 | 689 |
| MS.gene43413.t1 | MTR_5g095650 | 56.772 | 347 | 146 | 2 | 1 | 347 | 1 | 343 | 1.36e-126 | 367 |
| MS.gene43413.t1 | MTR_7g110600 | 35.836 | 293 | 184 | 2 | 55 | 343 | 81 | 373 | 6.72e-65 | 210 |
| MS.gene43413.t1 | MTR_4g094582 | 36.462 | 277 | 168 | 4 | 76 | 347 | 140 | 413 | 1.54e-61 | 202 |
| MS.gene43413.t1 | MTR_5g091565 | 33.053 | 357 | 213 | 7 | 3 | 347 | 37 | 379 | 6.00e-59 | 195 |
| MS.gene43413.t1 | MTR_4g133820 | 84.615 | 39 | 6 | 0 | 122 | 160 | 71 | 109 | 2.49e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43413.t1 | AT5G55630 | 57.627 | 295 | 125 | 0 | 53 | 347 | 58 | 352 | 1.19e-118 | 347 |
| MS.gene43413.t1 | AT5G55630 | 57.627 | 295 | 125 | 0 | 53 | 347 | 58 | 352 | 1.19e-118 | 347 |
| MS.gene43413.t1 | AT4G18160 | 38.571 | 280 | 167 | 3 | 72 | 347 | 151 | 429 | 4.37e-60 | 199 |
| MS.gene43413.t1 | AT4G01840 | 35.315 | 286 | 175 | 2 | 72 | 347 | 118 | 403 | 4.12e-57 | 191 |
| MS.gene43413.t1 | AT5G46370 | 36.429 | 280 | 165 | 5 | 78 | 347 | 153 | 429 | 5.91e-57 | 191 |
| MS.gene43413.t1 | AT1G02510 | 33.216 | 283 | 167 | 3 | 53 | 335 | 17 | 277 | 8.36e-46 | 158 |
| MS.gene43413.t1 | AT5G46360 | 38.554 | 166 | 101 | 1 | 183 | 347 | 89 | 254 | 7.24e-31 | 118 |
| MS.gene43413.t1 | AT5G46360 | 38.732 | 142 | 86 | 1 | 183 | 323 | 89 | 230 | 8.63e-26 | 104 |
Find 54 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCCACGGTCACTACTTT+AGG | 0.301171 | 8.4:-1013326 | MS.gene43413:CDS |
| GTTATACATTGTGGAGATAA+AGG | 0.305350 | 8.4:+1013839 | None:intergenic |
| ATGTGCAAGGCTGAAAATTT+TGG | 0.309852 | 8.4:-1013500 | MS.gene43413:CDS |
| TGTATACAAGTTGAAGGAAA+TGG | 0.323817 | 8.4:-1011949 | MS.gene43413:CDS |
| CGGTCACTACTTTAGGTTAT+GGG | 0.344172 | 8.4:-1013319 | MS.gene43413:CDS |
| TCACTGCTGAAATATCTTCT+TGG | 0.344460 | 8.4:+1011916 | None:intergenic |
| TTGTCACAACACAGAAATAA+AGG | 0.357592 | 8.4:+1013681 | None:intergenic |
| AGATTACATTGTTGAGAAAC+AGG | 0.387285 | 8.4:-1013543 | MS.gene43413:CDS |
| ACGGTCACTACTTTAGGTTA+TGG | 0.387375 | 8.4:-1013320 | MS.gene43413:CDS |
| TTATACATTGTGGAGATAAA+GGG | 0.395633 | 8.4:+1013840 | None:intergenic |
| ATTGTGGAGATAAAGGGGTT+TGG | 0.406546 | 8.4:+1013846 | None:intergenic |
| GTATACAAGTTGAAGGAAAT+GGG | 0.421596 | 8.4:-1011948 | MS.gene43413:CDS |
| CTTGAGGCAGCAGATCTTGA+TGG | 0.425392 | 8.4:-1013128 | MS.gene43413:CDS |
| GTCTTCACTGGCATGGCTCT+CGG | 0.434853 | 8.4:-1013590 | MS.gene43413:CDS |
| ACAATGACTACTGTTGGATA+TGG | 0.435922 | 8.4:-1013662 | MS.gene43413:CDS |
| GTTTGTTGTATACAAGTTGA+AGG | 0.439684 | 8.4:-1011955 | MS.gene43413:CDS |
| GCATGCATTTATGTCTTCAC+TGG | 0.440926 | 8.4:-1013602 | MS.gene43413:CDS |
| TCTAACAAGTTACCAAATTG+AGG | 0.463818 | 8.4:-1013732 | MS.gene43413:CDS |
| TGTCACAACACAGAAATAAA+GGG | 0.481987 | 8.4:+1013682 | None:intergenic |
| ATTGAGCAGCACCATTTGCT+TGG | 0.490697 | 8.4:-1013246 | MS.gene43413:CDS |
| AGCTATTGCTTTCAGAGTCA+AGG | 0.495133 | 8.4:-1013979 | MS.gene43413:CDS |
| GTGGAGATAAAGGGGTTTGG+AGG | 0.501419 | 8.4:+1013849 | None:intergenic |
| AAACTAGACTGTGATCAATC+AGG | 0.508619 | 8.4:-1011879 | MS.gene43413:CDS |
| CATTTATGTCTTCACTGGCA+TGG | 0.510032 | 8.4:-1013597 | MS.gene43413:CDS |
| AGAAGATATTTCAGCAGTGA+TGG | 0.521751 | 8.4:-1011913 | MS.gene43413:CDS |
| AAGAGCTTCTCGACTGCTGC+CGG | 0.529816 | 8.4:-1013293 | MS.gene43413:CDS |
| CTAACAAGTTACCAAATTGA+GGG | 0.530492 | 8.4:-1013731 | MS.gene43413:CDS |
| AAGAAGCAGAATTCAAGTTC+AGG | 0.531566 | 8.4:-1013808 | MS.gene43413:CDS |
| AAAAGACTGAGCCAAGCAAA+TGG | 0.534462 | 8.4:+1013235 | None:intergenic |
| GCGGTCTTCTTCTCTGAAGA+AGG | 0.536019 | 8.4:+1013927 | None:intergenic |
| ACTCTATTGTGTTTGTTCCA+CGG | 0.539533 | 8.4:-1013339 | MS.gene43413:CDS |
| TGTTTATCAGTTATACATTG+TGG | 0.539721 | 8.4:+1013830 | None:intergenic |
| TTGATGGAGACAAAGTTGTC+AGG | 0.546814 | 8.4:-1013112 | MS.gene43413:intron |
| GCTATTGCTTTCAGAGTCAA+GGG | 0.570375 | 8.4:-1013978 | MS.gene43413:CDS |
| TCTTGCTGAGTCCATGTGCA+AGG | 0.575638 | 8.4:-1013513 | MS.gene43413:CDS |
| ACTTGTTAGATAGAAACATA+AGG | 0.578014 | 8.4:+1013745 | None:intergenic |
| ATTATCACTAAGTGATCTTG+AGG | 0.579141 | 8.4:-1013144 | MS.gene43413:CDS |
| TATACATTGTGGAGATAAAG+GGG | 0.579592 | 8.4:+1013841 | None:intergenic |
| TGAAGACATAAATGCATGCA+AGG | 0.589047 | 8.4:+1013606 | None:intergenic |
| TTGTGTTTAGCAGCATACCT+AGG | 0.589326 | 8.4:-1013776 | MS.gene43413:CDS |
| GTTGTGACAATGACTACTGT+TGG | 0.595895 | 8.4:-1013668 | MS.gene43413:CDS |
| GGTCACTACTTTAGGTTATG+GGG | 0.598779 | 8.4:-1013318 | MS.gene43413:CDS |
| TGAAGATAGACAAAGATCAC+TGG | 0.601013 | 8.4:-1013189 | MS.gene43413:CDS |
| AACATAAGGTACCTGTGCCT+AGG | 0.617422 | 8.4:+1013759 | None:intergenic |
| AGAAGAAGACCGCGGCGTGG+CGG | 0.622978 | 8.4:-1013917 | MS.gene43413:CDS |
| GCTTCTCGACTGCTGCCGGT+AGG | 0.626037 | 8.4:-1013289 | MS.gene43413:CDS |
| TTAGCAGCATACCTAGGCAC+AGG | 0.645513 | 8.4:-1013770 | MS.gene43413:CDS |
| TTCACTGGCATGGCTCTCGG+TGG | 0.647484 | 8.4:-1013587 | MS.gene43413:CDS |
| TCTGAAGTTCCGCCACGCCG+CGG | 0.651177 | 8.4:+1013908 | None:intergenic |
| AATCTGCAGCAAGAACAGAA+TGG | 0.667031 | 8.4:-1013875 | MS.gene43413:CDS |
| CAGAGAAGAAGACCGCGGCG+TGG | 0.691942 | 8.4:-1013920 | MS.gene43413:CDS |
| GCTGCTCAATATCCAAAACA+CGG | 0.699934 | 8.4:+1013259 | None:intergenic |
| ATAACCTAAAGTAGTGACCG+TGG | 0.717695 | 8.4:+1013322 | None:intergenic |
| TTCTTCAGAGAAGAAGACCG+CGG | 0.758085 | 8.4:-1013925 | MS.gene43413:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAATAAAATAAAA+TGG | - | chr8.4:1013511-1013530 | MS.gene43413:CDS | 0.0% |
| !!! | ATTTTTTAATTATTTTTTTT+TGG | - | chr8.4:1013622-1013641 | MS.gene43413:CDS | 0.0% |
| !! | ATAAAATGGAAATTAAAATA+AGG | - | chr8.4:1013525-1013544 | MS.gene43413:CDS | 10.0% |
| !! | ATTAAAAAAATTATTCAATG+CGG | - | chr8.4:1013287-1013306 | MS.gene43413:CDS | 10.0% |
| !!! | ATAAAGTAATATTTTACATT+TGG | + | chr8.4:1013098-1013117 | None:intergenic | 10.0% |
| !!! | TAAAGTAATATTTTACATTT+GGG | + | chr8.4:1013097-1013116 | None:intergenic | 10.0% |
| !! | TTAAAAAAATTATTCAATGC+GGG | - | chr8.4:1013288-1013307 | MS.gene43413:CDS | 15.0% |
| !! | AAAATTGTTGATCAATATTG+AGG | + | chr8.4:1013849-1013868 | None:intergenic | 20.0% |
| !! | TAAAAAAATTATTCAATGCG+GGG | - | chr8.4:1013289-1013308 | MS.gene43413:CDS | 20.0% |
| !! | TTATGAGTGAATTTGTAAAT+TGG | + | chr8.4:1012870-1012889 | None:intergenic | 20.0% |
| !! | TTTATTTATATCATTTGCAC+CGG | - | chr8.4:1013732-1013751 | MS.gene43413:CDS | 20.0% |
| ! | AAACTACCTTTGATACTTAA+AGG | - | chr8.4:1013163-1013182 | MS.gene43413:CDS | 25.0% |
| ! | TGTTTATCAGTTATACATTG+TGG | + | chr8.4:1012013-1012032 | None:intergenic | 25.0% |
| ! | TTATACATTGTGGAGATAAA+GGG | + | chr8.4:1012003-1012022 | None:intergenic | 25.0% |
| ! | TTATTTATATCATTTGCACC+GGG | - | chr8.4:1013733-1013752 | MS.gene43413:CDS | 25.0% |
| !! | ACTTGTTAGATAGAAACATA+AGG | + | chr8.4:1012098-1012117 | None:intergenic | 25.0% |
| !! | ATCACTTAGTGATAATTTTC+GGG | + | chr8.4:1012692-1012711 | None:intergenic | 25.0% |
| !! | GATCACTTAGTGATAATTTT+CGG | + | chr8.4:1012693-1012712 | None:intergenic | 25.0% |
| !! | GTAATATTTTACATTTGGGA+CGG | + | chr8.4:1013093-1013112 | None:intergenic | 25.0% |
| !! | TATTGAGAATCTAGATTTTG+TGG | - | chr8.4:1012474-1012493 | MS.gene43413:intron | 25.0% |
| !!! | GTATTACAATGTTGCTTTTA+GGG | - | chr8.4:1013241-1013260 | MS.gene43413:CDS | 25.0% |
| !!! | TAATATTTTACATTTGGGAC+GGG | + | chr8.4:1013092-1013111 | None:intergenic | 25.0% |
| !!! | TGTATTACAATGTTGCTTTT+AGG | - | chr8.4:1013240-1013259 | MS.gene43413:CDS | 25.0% |
| AATCATGAGCACAAAAAAAG+TGG | + | chr8.4:1012431-1012450 | None:intergenic | 30.0% | |
| AATCTCTGATTATTGCGAAT+TGG | + | chr8.4:1012818-1012837 | None:intergenic | 30.0% | |
| AGATTACATTGTTGAGAAAC+AGG | - | chr8.4:1012297-1012316 | MS.gene43413:intron | 30.0% | |
| ATTATCACTAAGTGATCTTG+AGG | - | chr8.4:1012696-1012715 | MS.gene43413:intron | 30.0% | |
| CTAACAAGTTACCAAATTGA+GGG | - | chr8.4:1012109-1012128 | MS.gene43413:intron | 30.0% | |
| GCTTAGTGTAGCTAAATTAT+TGG | + | chr8.4:1013818-1013837 | None:intergenic | 30.0% | |
| GTAGATCCTTTAAGTATCAA+AGG | + | chr8.4:1013172-1013191 | None:intergenic | 30.0% | |
| GTTATACATTGTGGAGATAA+AGG | + | chr8.4:1012004-1012023 | None:intergenic | 30.0% | |
| TATACATTGTGGAGATAAAG+GGG | + | chr8.4:1012002-1012021 | None:intergenic | 30.0% | |
| TCTAACAAGTTACCAAATTG+AGG | - | chr8.4:1012108-1012127 | MS.gene43413:intron | 30.0% | |
| TGTCACAACACAGAAATAAA+GGG | + | chr8.4:1012161-1012180 | None:intergenic | 30.0% | |
| TTGTCACAACACAGAAATAA+AGG | + | chr8.4:1012162-1012181 | None:intergenic | 30.0% | |
| ! | GTATACAAGTTGAAGGAAAT+GGG | - | chr8.4:1013892-1013911 | MS.gene43413:CDS | 30.0% |
| ! | TGTATACAAGTTGAAGGAAA+TGG | - | chr8.4:1013891-1013910 | MS.gene43413:CDS | 30.0% |
| ! | TTTTCCCCGATTTCAAAATA+CGG | - | chr8.4:1013014-1013033 | MS.gene43413:intron | 30.0% |
| !! | AGTTTTGCTATAGTGCTATT+TGG | + | chr8.4:1012214-1012233 | None:intergenic | 30.0% |
| !! | GTTTGTTGTATACAAGTTGA+AGG | - | chr8.4:1013885-1013904 | MS.gene43413:CDS | 30.0% |
| !! | TGAAAATTTTGGTCTACAAG+AGG | - | chr8.4:1012351-1012370 | MS.gene43413:intron | 30.0% |
| !!! | TTGTTTTTATGCCCTCAATT+TGG | + | chr8.4:1012123-1012142 | None:intergenic | 30.0% |
| AAAATTATTCAATGCGGGGA+CGG | - | chr8.4:1013293-1013312 | MS.gene43413:CDS | 35.0% | |
| AAACTAGACTGTGATCAATC+AGG | - | chr8.4:1013961-1013980 | MS.gene43413:CDS | 35.0% | |
| ACAAAGATCACTGGCAAAAA+TGG | - | chr8.4:1012660-1012679 | MS.gene43413:intron | 35.0% | |
| ACAATGACTACTGTTGGATA+TGG | - | chr8.4:1012178-1012197 | MS.gene43413:intron | 35.0% | |
| ACTCCTTTGATATGTATCGA+CGG | - | chr8.4:1013647-1013666 | MS.gene43413:CDS | 35.0% | |
| ACTCTATTGTGTTTGTTCCA+CGG | - | chr8.4:1012501-1012520 | MS.gene43413:intron | 35.0% | |
| AGAAGATATTTCAGCAGTGA+TGG | - | chr8.4:1013927-1013946 | MS.gene43413:CDS | 35.0% | |
| ATCGTATCAGATACACGTAT+AGG | + | chr8.4:1013473-1013492 | None:intergenic | 35.0% | |
| CACTCATAAGTTATGAAGCA+CGG | - | chr8.4:1012881-1012900 | MS.gene43413:intron | 35.0% | |
| CGATTTCAAAATACGGGTAT+GGG | - | chr8.4:1013021-1013040 | MS.gene43413:intron | 35.0% | |
| TAAACAATCACACGTATCTG+AGG | - | chr8.4:1013555-1013574 | MS.gene43413:CDS | 35.0% | |
| TCACTGCTGAAATATCTTCT+TGG | + | chr8.4:1013927-1013946 | None:intergenic | 35.0% | |
| TCGGGTAAGTATATGAGAAT+CGG | - | chr8.4:1013396-1013415 | MS.gene43413:CDS | 35.0% | |
| TGAAGACATAAATGCATGCA+AGG | + | chr8.4:1012237-1012256 | None:intergenic | 35.0% | |
| TGAAGATAGACAAAGATCAC+TGG | - | chr8.4:1012651-1012670 | MS.gene43413:intron | 35.0% | |
| TGTTAAAGTGAGCGTATTGT+TGG | - | chr8.4:1013213-1013232 | MS.gene43413:CDS | 35.0% | |
| TTTCCCCGATTTCAAAATAC+GGG | - | chr8.4:1013015-1013034 | MS.gene43413:intron | 35.0% | |
| ! | AAAATTTTCAGCCTTGCACA+TGG | + | chr8.4:1012341-1012360 | None:intergenic | 35.0% |
| ! | AAGAAGCAGAATTCAAGTTC+AGG | - | chr8.4:1012032-1012051 | MS.gene43413:intron | 35.0% |
| ! | ATGTGCAAGGCTGAAAATTT+TGG | - | chr8.4:1012340-1012359 | MS.gene43413:intron | 35.0% |
| !!! | ATACCCGTATTTTGAAATCG+GGG | + | chr8.4:1013021-1013040 | None:intergenic | 35.0% |
| !!! | CATACCCGTATTTTGAAATC+GGG | + | chr8.4:1013022-1013041 | None:intergenic | 35.0% |
| !!! | CCATACCCGTATTTTGAAAT+CGG | + | chr8.4:1013023-1013042 | None:intergenic | 35.0% |
| !!! | TTTTTTGTGCTCATGATTGC+AGG | - | chr8.4:1012433-1012452 | MS.gene43413:intron | 35.0% |
| AAAACCCGTCAAATTGGGTT+TGG | + | chr8.4:1012960-1012979 | None:intergenic | 40.0% | |
| AAAAGACTGAGCCAAGCAAA+TGG | + | chr8.4:1012608-1012627 | None:intergenic | 40.0% | |
| AAACACGGCAAAAATCCTAC+CGG | + | chr8.4:1012569-1012588 | None:intergenic | 40.0% | |
| AAATTATTCAATGCGGGGAC+GGG | - | chr8.4:1013294-1013313 | MS.gene43413:CDS | 40.0% | |
| AATCTGCAGCAAGAACAGAA+TGG | - | chr8.4:1011965-1011984 | MS.gene43413:CDS | 40.0% | |
| AGCTATTGCTTTCAGAGTCA+AGG | - | chr8.4:1011861-1011880 | MS.gene43413:CDS | 40.0% | |
| ATAACCTAAAGTAGTGACCG+TGG | + | chr8.4:1012521-1012540 | None:intergenic | 40.0% | |
| ATACCCAAACCCAGTCAAAA+CGG | + | chr8.4:1012985-1013004 | None:intergenic | 40.0% | |
| ATCAGATACACGTATAGGCA+TGG | + | chr8.4:1013468-1013487 | None:intergenic | 40.0% | |
| ATTCAATTTCTCATCCCCGT+TGG | - | chr8.4:1013359-1013378 | MS.gene43413:CDS | 40.0% | |
| ATTGTGGAGATAAAGGGGTT+TGG | + | chr8.4:1011997-1012016 | None:intergenic | 40.0% | |
| CATTTATGTCTTCACTGGCA+TGG | - | chr8.4:1012243-1012262 | MS.gene43413:intron | 40.0% | |
| CCGATTTCAAAATACGGGTA+TGG | - | chr8.4:1013020-1013039 | MS.gene43413:intron | 40.0% | |
| CGGGTAAGTATATGAGAATC+GGG | - | chr8.4:1013397-1013416 | MS.gene43413:CDS | 40.0% | |
| GCATGCATTTATGTCTTCAC+TGG | - | chr8.4:1012238-1012257 | MS.gene43413:intron | 40.0% | |
| GCTATTGCTTTCAGAGTCAA+GGG | - | chr8.4:1011862-1011881 | MS.gene43413:CDS | 40.0% | |
| GCTGCTCAATATCCAAAACA+CGG | + | chr8.4:1012584-1012603 | None:intergenic | 40.0% | |
| GTATATGAGAATCGGGTATG+TGG | - | chr8.4:1013404-1013423 | MS.gene43413:CDS | 40.0% | |
| GTTGTGACAATGACTACTGT+TGG | - | chr8.4:1012172-1012191 | MS.gene43413:intron | 40.0% | |
| TATGATCTTACTGCATCTCC+CGG | + | chr8.4:1013754-1013773 | None:intergenic | 40.0% | |
| TCAACGCAATACTAGTGATG+AGG | + | chr8.4:1013786-1013805 | None:intergenic | 40.0% | |
| TTCAAAATACGGGTATGGGA+CGG | - | chr8.4:1013025-1013044 | MS.gene43413:intron | 40.0% | |
| TTCAATTTCTCATCCCCGTT+GGG | - | chr8.4:1013360-1013379 | MS.gene43413:CDS | 40.0% | |
| TTGATGGAGACAAAGTTGTC+AGG | - | chr8.4:1012728-1012747 | MS.gene43413:intron | 40.0% | |
| TTGTGTTTAGCAGCATACCT+AGG | - | chr8.4:1012064-1012083 | MS.gene43413:intron | 40.0% | |
| ! | ACGGTCACTACTTTAGGTTA+TGG | - | chr8.4:1012520-1012539 | MS.gene43413:intron | 40.0% |
| ! | CGGTCACTACTTTAGGTTAT+GGG | - | chr8.4:1012521-1012540 | MS.gene43413:intron | 40.0% |
| ! | GGTCACTACTTTAGGTTATG+GGG | - | chr8.4:1012522-1012541 | MS.gene43413:intron | 40.0% |
| ! | GTAGGATTTTTGCCGTGTTT+TGG | - | chr8.4:1012569-1012588 | MS.gene43413:intron | 40.0% |
| ! | TTTACATTTGGGACGGGTTT+GGG | + | chr8.4:1013086-1013105 | None:intergenic | 40.0% |
| !! | TTTTACATTTGGGACGGGTT+TGG | + | chr8.4:1013087-1013106 | None:intergenic | 40.0% |
| !! | TTTTGACTGGGTTTGGGTAT+GGG | - | chr8.4:1012985-1013004 | MS.gene43413:intron | 40.0% |
| AATTATTCAATGCGGGGACG+GGG | - | chr8.4:1013295-1013314 | MS.gene43413:CDS | 45.0% | |
| ACAACAAACTCTGCAGCACT+GGG | + | chr8.4:1013874-1013893 | None:intergenic | 45.0% | |
| ACACGTATAGGCATGGCAAT+GGG | + | chr8.4:1013461-1013480 | None:intergenic | 45.0% | |
| ACGCCGTCGATACATATCAA+AGG | + | chr8.4:1013653-1013672 | None:intergenic | 45.0% | |
| AGCAGACACTTCACAATTGC+AGG | - | chr8.4:1012782-1012801 | MS.gene43413:intron | 45.0% | |
| ATGAGAATCGGGTATGTGGA+TGG | - | chr8.4:1013408-1013427 | MS.gene43413:CDS | 45.0% | |
| ATTGAGCAGCACCATTTGCT+TGG | - | chr8.4:1012594-1012613 | MS.gene43413:intron | 45.0% | |
| CCGAACCAAACCCAATTTGA+CGG | - | chr8.4:1012952-1012971 | MS.gene43413:intron | 45.0% | |
| CGAACCAAACCCAATTTGAC+GGG | - | chr8.4:1012953-1012972 | MS.gene43413:intron | 45.0% | |
| GCAGACACTTCACAATTGCA+GGG | - | chr8.4:1012783-1012802 | MS.gene43413:intron | 45.0% | |
| TACAACAAACTCTGCAGCAC+TGG | + | chr8.4:1013875-1013894 | None:intergenic | 45.0% | |
| TACACGTATAGGCATGGCAA+TGG | + | chr8.4:1013462-1013481 | None:intergenic | 45.0% | |
| TACCCAAACCCAGTCAAAAC+GGG | + | chr8.4:1012984-1013003 | None:intergenic | 45.0% | |
| TCAAAATACGGGTATGGGAC+GGG | - | chr8.4:1013026-1013045 | MS.gene43413:intron | 45.0% | |
| TGAGAATCGGGTATGTGGAT+GGG | - | chr8.4:1013409-1013428 | MS.gene43413:CDS | 45.0% | |
| TGTTCCACGGTCACTACTTT+AGG | - | chr8.4:1012514-1012533 | MS.gene43413:intron | 45.0% | |
| TTCTTCAGAGAAGAAGACCG+CGG | - | chr8.4:1011915-1011934 | MS.gene43413:CDS | 45.0% | |
| ! | AACATAAGGTACCTGTGCCT+AGG | + | chr8.4:1012084-1012103 | None:intergenic | 45.0% |
| ! | CCGTCAAATTGGGTTTGGTT+CGG | + | chr8.4:1012955-1012974 | None:intergenic | 45.0% |
| ! | CGTCAAATTGGGTTTGGTTC+GGG | + | chr8.4:1012954-1012973 | None:intergenic | 45.0% |
| !! | AAATTGGGTTTGGTTCGGGT+GGG | + | chr8.4:1012950-1012969 | None:intergenic | 45.0% |
| !!! | GTTTTGACTGGGTTTGGGTA+TGG | - | chr8.4:1012984-1013003 | MS.gene43413:intron | 45.0% |
| ACCCAAACCCAGTCAAAACG+GGG | + | chr8.4:1012983-1013002 | None:intergenic | 50.0% | |
| ACGGGGAAAACCCGTCAAAT+TGG | + | chr8.4:1012966-1012985 | None:intergenic | 50.0% | |
| ACTGGGTTTGGGTATGGGTA+TGG | - | chr8.4:1012990-1013009 | MS.gene43413:intron | 50.0% | |
| ATACCCTACCCATACCCAAC+GGG | + | chr8.4:1013377-1013396 | None:intergenic | 50.0% | |
| CACGTATAGGCATGGCAATG+GGG | + | chr8.4:1013460-1013479 | None:intergenic | 50.0% | |
| CGGGGAAAACCCGTCAAATT+GGG | + | chr8.4:1012965-1012984 | None:intergenic | 50.0% | |
| CTGGGTTTGGGTATGGGTAT+GGG | - | chr8.4:1012991-1013010 | MS.gene43413:intron | 50.0% | |
| CTTGAGGCAGCAGATCTTGA+TGG | - | chr8.4:1012712-1012731 | MS.gene43413:intron | 50.0% | |
| GAGAATCGGGTATGTGGATG+GGG | - | chr8.4:1013410-1013429 | MS.gene43413:CDS | 50.0% | |
| GATACCCTACCCATACCCAA+CGG | + | chr8.4:1013378-1013397 | None:intergenic | 50.0% | |
| GGCAACAAAACCCATACCCA+CGG | - | chr8.4:1012921-1012940 | MS.gene43413:intron | 50.0% | |
| GTGGAGATAAAGGGGTTTGG+AGG | + | chr8.4:1011994-1012013 | None:intergenic | 50.0% | |
| GTTGGGTATGGGTAGGGTAT+CGG | - | chr8.4:1013377-1013396 | MS.gene43413:CDS | 50.0% | |
| TCTTGCTGAGTCCATGTGCA+AGG | - | chr8.4:1012327-1012346 | MS.gene43413:intron | 50.0% | |
| TTAGCAGCATACCTAGGCAC+AGG | - | chr8.4:1012070-1012089 | MS.gene43413:intron | 50.0% | |
| TTCTCATCCCCGTTGGGTAT+GGG | - | chr8.4:1013366-1013385 | MS.gene43413:CDS | 50.0% | |
| TTTCTCATCCCCGTTGGGTA+TGG | - | chr8.4:1013365-1013384 | MS.gene43413:CDS | 50.0% | |
| ! | ATTTGGGACGGGTTTGGGTA+TGG | + | chr8.4:1013081-1013100 | None:intergenic | 50.0% |
| ! | GCGGTCTTCTTCTCTGAAGA+AGG | + | chr8.4:1011916-1011935 | None:intergenic | 50.0% |
| ! | TTGGGTATGGGTAGGGTATC+GGG | - | chr8.4:1013378-1013397 | MS.gene43413:CDS | 50.0% |
| ! | TTTGGGACGGGTTTGGGTAT+GGG | + | chr8.4:1013080-1013099 | None:intergenic | 50.0% |
| !! | CAAATTGGGTTTGGTTCGGG+TGG | + | chr8.4:1012951-1012970 | None:intergenic | 50.0% |
| !!! | GGGTTTTCCCCGTTTTGACT+GGG | - | chr8.4:1012973-1012992 | MS.gene43413:intron | 50.0% |
| !!! | TCCCCGTTTTGACTGGGTTT+GGG | - | chr8.4:1012979-1012998 | MS.gene43413:intron | 50.0% |
| !!! | TTCCCCGTTTTGACTGGGTT+TGG | - | chr8.4:1012978-1012997 | MS.gene43413:intron | 50.0% |
| AAGAGCTTCTCGACTGCTGC+CGG | - | chr8.4:1012547-1012566 | MS.gene43413:intron | 55.0% | |
| ACGGACACGATACGTAGGCA+TGG | - | chr8.4:1012900-1012919 | MS.gene43413:intron | 55.0% | |
| ACGGGTTTGGGTATGGGTTC+GGG | + | chr8.4:1013074-1013093 | None:intergenic | 55.0% | |
| ATCCCCGTTGGGTATGGGTA+GGG | - | chr8.4:1013371-1013390 | MS.gene43413:CDS | 55.0% | |
| ATCGGGTATGTGGATGGGGA+AGG | - | chr8.4:1013414-1013433 | MS.gene43413:CDS | 55.0% | |
| GAAGCACGGACACGATACGT+AGG | - | chr8.4:1012895-1012914 | MS.gene43413:intron | 55.0% | |
| GTATAGGCATGGCAATGGGG+CGG | + | chr8.4:1013457-1013476 | None:intergenic | 55.0% | |
| GTCTTCACTGGCATGGCTCT+CGG | - | chr8.4:1012250-1012269 | MS.gene43413:intron | 55.0% | |
| TACCCTACCCATACCCAACG+GGG | + | chr8.4:1013376-1013395 | None:intergenic | 55.0% | |
| TACGGGTATGGGACGGGTAA+CGG | - | chr8.4:1013032-1013051 | MS.gene43413:intron | 55.0% | |
| TATAGGCATGGCAATGGGGC+GGG | + | chr8.4:1013456-1013475 | None:intergenic | 55.0% | |
| TTTGGGTATGGGTTCGGGGT+GGG | + | chr8.4:1013069-1013088 | None:intergenic | 55.0% | |
| ! | GACGGGTTTGGGTATGGGTT+CGG | + | chr8.4:1013075-1013094 | None:intergenic | 55.0% |
| !! | CGGGTTTTCCCCGTTTTGAC+TGG | - | chr8.4:1012972-1012991 | MS.gene43413:intron | 55.0% |
| !! | GGGACGGGTAACGGGTATAT+AGG | - | chr8.4:1013041-1013060 | MS.gene43413:intron | 55.0% |
| ACGGGTATGGGACGGGTAAC+GGG | - | chr8.4:1013033-1013052 | MS.gene43413:intron | 60.0% | |
| ATACCCAAACCCGTCGGGGA+CGG | - | chr8.4:1013329-1013348 | MS.gene43413:CDS | 60.0% | |
| ATAGGCATGGCAATGGGGCG+GGG | + | chr8.4:1013455-1013474 | None:intergenic | 60.0% | |
| ATTCAATGCGGGGACGGGGA+TGG | - | chr8.4:1013299-1013318 | MS.gene43413:CDS | 60.0% | |
| CATCCCCGTTGGGTATGGGT+AGG | - | chr8.4:1013370-1013389 | MS.gene43413:CDS | 60.0% | |
| CGGGTTTGGGTATGGGTTCG+GGG | + | chr8.4:1013073-1013092 | None:intergenic | 60.0% | |
| GGGTGGGTAACCGTGGGTAT+GGG | + | chr8.4:1012934-1012953 | None:intergenic | 60.0% | |
| GTTTGGGTATGGGTTCGGGG+TGG | + | chr8.4:1013070-1013089 | None:intergenic | 60.0% | |
| TTCAATGCGGGGACGGGGAT+GGG | - | chr8.4:1013300-1013319 | MS.gene43413:CDS | 60.0% | |
| TTCACTGGCATGGCTCTCGG+TGG | - | chr8.4:1012253-1012272 | MS.gene43413:intron | 60.0% | |
| ! | CACACGTATCTGAGGCGTGC+TGG | - | chr8.4:1013563-1013582 | MS.gene43413:CDS | 60.0% |
| ! | GAGACGTGTCGACGGCGTAT+CGG | - | chr8.4:1013585-1013604 | MS.gene43413:CDS | 60.0% |
| ! | TGGTTCGGGTGGGTAACCGT+GGG | + | chr8.4:1012940-1012959 | None:intergenic | 60.0% |
| !! | TTGGTTCGGGTGGGTAACCG+TGG | + | chr8.4:1012941-1012960 | None:intergenic | 60.0% |
| AATCCCATCCCCGTCCCCGA+CGG | + | chr8.4:1013342-1013361 | None:intergenic | 65.0% | |
| AGAAGAAGACCGCGGCGTGG+CGG | - | chr8.4:1011923-1011942 | MS.gene43413:CDS | 65.0% | |
| CAGAGAAGAAGACCGCGGCG+TGG | - | chr8.4:1011920-1011939 | MS.gene43413:CDS | 65.0% | |
| CGGGGATACCCAAACCCGTC+GGG | - | chr8.4:1013324-1013343 | MS.gene43413:CDS | 65.0% | |
| CGGGTGGGTAACCGTGGGTA+TGG | + | chr8.4:1012935-1012954 | None:intergenic | 65.0% | |
| GCGGGGATACCCAAACCCGT+CGG | - | chr8.4:1013323-1013342 | MS.gene43413:CDS | 65.0% | |
| GCGTGCTGGAGACGTGTCGA+CGG | - | chr8.4:1013577-1013596 | MS.gene43413:CDS | 65.0% | |
| GCTTCTCGACTGCTGCCGGT+AGG | - | chr8.4:1012551-1012570 | MS.gene43413:intron | 65.0% | |
| GGGGATACCCAAACCCGTCG+GGG | - | chr8.4:1013325-1013344 | MS.gene43413:CDS | 65.0% | |
| TACCCAAACCCGTCGGGGAC+GGG | - | chr8.4:1013330-1013349 | MS.gene43413:CDS | 65.0% | |
| TCAATGCGGGGACGGGGATG+GGG | - | chr8.4:1013301-1013320 | MS.gene43413:CDS | 65.0% | |
| ! | TCTGAAGTTCCGCCACGCCG+CGG | + | chr8.4:1011935-1011954 | None:intergenic | 65.0% |
| AAACCCGTCGGGGACGGGGA+TGG | - | chr8.4:1013335-1013354 | MS.gene43413:CDS | 70.0% | |
| AACCCGTCGGGGACGGGGAT+GGG | - | chr8.4:1013336-1013355 | MS.gene43413:CDS | 70.0% | |
| ACCCAAACCCGTCGGGGACG+GGG | - | chr8.4:1013331-1013350 | MS.gene43413:CDS | 70.0% | |
| ATCCCATCCCCGTCCCCGAC+GGG | + | chr8.4:1013341-1013360 | None:intergenic | 70.0% | |
| CAATGGGGCGGGGTGGGGAT+GGG | + | chr8.4:1013445-1013464 | None:intergenic | 70.0% | |
| CATGGCAATGGGGCGGGGTG+GGG | + | chr8.4:1013450-1013469 | None:intergenic | 70.0% | |
| GCATGGCAATGGGGCGGGGT+GGG | + | chr8.4:1013451-1013470 | None:intergenic | 70.0% | |
| ! | ATCCCCGTCCCCGACGGGTT+TGG | + | chr8.4:1013336-1013355 | None:intergenic | 70.0% |
| ! | TCCCCGTCCCCGACGGGTTT+GGG | + | chr8.4:1013335-1013354 | None:intergenic | 70.0% |
| ATGCGGGGACGGGGATGGGG+CGG | - | chr8.4:1013304-1013323 | MS.gene43413:CDS | 75.0% | |
| GCAATGGGGCGGGGTGGGGA+TGG | + | chr8.4:1013446-1013465 | None:intergenic | 75.0% | |
| GGCATGGCAATGGGGCGGGG+TGG | + | chr8.4:1013452-1013471 | None:intergenic | 75.0% | |
| ! | TGCGGGGACGGGGATGGGGC+GGG | - | chr8.4:1013305-1013324 | MS.gene43413:CDS | 80.0% |
| ! | GCGGGGACGGGGATGGGGCG+GGG | - | chr8.4:1013306-1013325 | MS.gene43413:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 1011839 | 1014023 | 1011839 | ID=MS.gene43413 |
| chr8.4 | mRNA | 1011839 | 1014023 | 1011839 | ID=MS.gene43413.t1;Parent=MS.gene43413 |
| chr8.4 | exon | 1013113 | 1014023 | 1013113 | ID=MS.gene43413.t1.exon1;Parent=MS.gene43413.t1 |
| chr8.4 | CDS | 1013113 | 1014023 | 1013113 | ID=cds.MS.gene43413.t1;Parent=MS.gene43413.t1 |
| chr8.4 | exon | 1011839 | 1011986 | 1011839 | ID=MS.gene43413.t1.exon2;Parent=MS.gene43413.t1 |
| chr8.4 | CDS | 1011839 | 1011986 | 1011839 | ID=cds.MS.gene43413.t1;Parent=MS.gene43413.t1 |
| Gene Sequence |
| Protein sequence |
