Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59948.t1 | RHN63961.1 | 86.4 | 345 | 43 | 1 | 1 | 345 | 1 | 341 | 1.50E-100 | 376.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59948.t1 | Q9XI36 | 62.8 | 86 | 31 | 1 | 21 | 105 | 5 | 90 | 8.8e-25 | 115.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59948.t1 | A0A396IGL6 | 86.4 | 345 | 43 | 1 | 1 | 345 | 1 | 341 | 1.1e-100 | 376.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene59948 | 0.808647 | 2.80E-50 | -1.69E-46 |
| MS.gene049153 | MS.gene59948 | 0.801712 | 7.91E-49 | -1.69E-46 |
| MS.gene049159 | MS.gene59948 | 0.865324 | 6.41E-65 | -1.69E-46 |
| MS.gene049378 | MS.gene59948 | 0.811988 | 5.32E-51 | -1.69E-46 |
| MS.gene049435 | MS.gene59948 | 0.844947 | 5.51E-59 | -1.69E-46 |
| MS.gene049452 | MS.gene59948 | 0.819099 | 1.39E-52 | -1.69E-46 |
| MS.gene050226 | MS.gene59948 | 0.838542 | 2.70E-57 | -1.69E-46 |
| MS.gene050227 | MS.gene59948 | 0.824803 | 6.62E-54 | -1.69E-46 |
| MS.gene050228 | MS.gene59948 | 0.830158 | 3.44E-55 | -1.69E-46 |
| MS.gene050442 | MS.gene59948 | 0.878465 | 2.75E-69 | -1.69E-46 |
| MS.gene050605 | MS.gene59948 | 0.841073 | 5.93E-58 | -1.69E-46 |
| MS.gene050623 | MS.gene59948 | -0.864677 | 1.02E-64 | -1.69E-46 |
| MS.gene050642 | MS.gene59948 | 0.800056 | 1.72E-48 | -1.69E-46 |
| MS.gene050654 | MS.gene59948 | 0.800303 | 1.54E-48 | -1.69E-46 |
| MS.gene050680 | MS.gene59948 | 0.826731 | 2.31E-54 | -1.69E-46 |
| MS.gene050724 | MS.gene59948 | 0.800692 | 1.28E-48 | -1.69E-46 |
| MS.gene050750 | MS.gene59948 | 0.820297 | 7.39E-53 | -1.69E-46 |
| MS.gene050759 | MS.gene59948 | 0.848267 | 6.83E-60 | -1.69E-46 |
| MS.gene050762 | MS.gene59948 | 0.851127 | 1.09E-60 | -1.69E-46 |
| MS.gene050763 | MS.gene59948 | 0.85205 | 5.95E-61 | -1.69E-46 |
| MS.gene050815 | MS.gene59948 | 0.82458 | 7.47E-54 | -1.69E-46 |
| MS.gene050826 | MS.gene59948 | 0.854594 | 1.11E-61 | -1.69E-46 |
| MS.gene050941 | MS.gene59948 | 0.800464 | 1.42E-48 | -1.69E-46 |
| MS.gene050953 | MS.gene59948 | 0.820684 | 6.02E-53 | -1.69E-46 |
| MS.gene050962 | MS.gene59948 | 0.838378 | 2.98E-57 | -1.69E-46 |
| MS.gene051066 | MS.gene59948 | 0.817199 | 3.73E-52 | -1.69E-46 |
| MS.gene051147 | MS.gene59948 | 0.802628 | 5.13E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene59948 | 0.837351 | 5.47E-57 | -1.69E-46 |
| MS.gene051344 | MS.gene59948 | 0.801535 | 8.60E-49 | -1.69E-46 |
| MS.gene051368 | MS.gene59948 | 0.804596 | 2.00E-49 | -1.69E-46 |
| MS.gene051535 | MS.gene59948 | 0.816786 | 4.62E-52 | -1.69E-46 |
| MS.gene051800 | MS.gene59948 | 0.807085 | 6.01E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene59948 | 0.833039 | 6.70E-56 | -1.69E-46 |
| MS.gene051983 | MS.gene59948 | 0.810989 | 8.76E-51 | -1.69E-46 |
| MS.gene052012 | MS.gene59948 | 0.83687 | 7.26E-57 | -1.69E-46 |
| MS.gene05215 | MS.gene59948 | 0.814106 | 1.82E-51 | -1.69E-46 |
| MS.gene052426 | MS.gene59948 | 0.838421 | 2.91E-57 | -1.69E-46 |
| MS.gene052674 | MS.gene59948 | 0.81608 | 6.65E-52 | -1.69E-46 |
| MS.gene052675 | MS.gene59948 | 0.811479 | 6.86E-51 | -1.69E-46 |
| MS.gene052677 | MS.gene59948 | 0.821991 | 3.01E-53 | -1.69E-46 |
| MS.gene052863 | MS.gene59948 | 0.81494 | 1.19E-51 | -1.69E-46 |
| MS.gene05288 | MS.gene59948 | 0.826194 | 3.10E-54 | -1.69E-46 |
| MS.gene052896 | MS.gene59948 | 0.808326 | 3.27E-50 | -1.69E-46 |
| MS.gene05289 | MS.gene59948 | 0.812317 | 4.51E-51 | -1.69E-46 |
| MS.gene053008 | MS.gene59948 | 0.869212 | 3.67E-66 | -1.69E-46 |
| MS.gene053166 | MS.gene59948 | 0.824408 | 8.20E-54 | -1.69E-46 |
| MS.gene053494 | MS.gene59948 | 0.833729 | 4.51E-56 | -1.69E-46 |
| MS.gene054236 | MS.gene59948 | 0.815965 | 7.05E-52 | -1.69E-46 |
| MS.gene054291 | MS.gene59948 | -0.816772 | 4.66E-52 | -1.69E-46 |
| MS.gene054379 | MS.gene59948 | 0.847442 | 1.15E-59 | -1.69E-46 |
| MS.gene054405 | MS.gene59948 | 0.814833 | 1.26E-51 | -1.69E-46 |
| MS.gene054467 | MS.gene59948 | 0.808792 | 2.60E-50 | -1.69E-46 |
| MS.gene054468 | MS.gene59948 | 0.802592 | 5.22E-49 | -1.69E-46 |
| MS.gene054472 | MS.gene59948 | 0.806327 | 8.68E-50 | -1.69E-46 |
| MS.gene054559 | MS.gene59948 | 0.80165 | 8.15E-49 | -1.69E-46 |
| MS.gene054657 | MS.gene59948 | 0.818821 | 1.60E-52 | -1.69E-46 |
| MS.gene054658 | MS.gene59948 | 0.824943 | 6.14E-54 | -1.69E-46 |
| MS.gene05468 | MS.gene59948 | 0.804581 | 2.02E-49 | -1.69E-46 |
| MS.gene054713 | MS.gene59948 | 0.804469 | 2.13E-49 | -1.69E-46 |
| MS.gene054775 | MS.gene59948 | 0.816888 | 4.38E-52 | -1.69E-46 |
| MS.gene054930 | MS.gene59948 | 0.80989 | 1.51E-50 | -1.69E-46 |
| MS.gene05510 | MS.gene59948 | 0.858531 | 7.73E-63 | -1.69E-46 |
| MS.gene05517 | MS.gene59948 | 0.825521 | 4.48E-54 | -1.69E-46 |
| MS.gene055356 | MS.gene59948 | 0.804489 | 2.11E-49 | -1.69E-46 |
| MS.gene055358 | MS.gene59948 | 0.808283 | 3.34E-50 | -1.69E-46 |
| MS.gene055623 | MS.gene59948 | 0.805855 | 1.09E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene59948 | 0.879136 | 1.59E-69 | -1.69E-46 |
| MS.gene055818 | MS.gene59948 | 0.803084 | 4.13E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene59948 | 0.86507 | 7.71E-65 | -1.69E-46 |
| MS.gene056480 | MS.gene59948 | 0.813233 | 2.84E-51 | -1.69E-46 |
| MS.gene056506 | MS.gene59948 | 0.821137 | 4.74E-53 | -1.69E-46 |
| MS.gene056873 | MS.gene59948 | 0.802435 | 5.62E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene59948 | 0.811837 | 5.73E-51 | -1.69E-46 |
| MS.gene05761 | MS.gene59948 | 0.857736 | 1.33E-62 | -1.69E-46 |
| MS.gene057693 | MS.gene59948 | 0.820424 | 6.91E-53 | -1.69E-46 |
| MS.gene057869 | MS.gene59948 | 0.811141 | 8.12E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene59948 | 0.802517 | 5.40E-49 | -1.69E-46 |
| MS.gene058081 | MS.gene59948 | 0.80987 | 1.53E-50 | -1.69E-46 |
| MS.gene058146 | MS.gene59948 | 0.865371 | 6.20E-65 | -1.69E-46 |
| MS.gene058399 | MS.gene59948 | 0.806257 | 8.98E-50 | -1.69E-46 |
| MS.gene058435 | MS.gene59948 | 0.818912 | 1.53E-52 | -1.69E-46 |
| MS.gene058503 | MS.gene59948 | 0.817621 | 3.00E-52 | -1.69E-46 |
| MS.gene058548 | MS.gene59948 | 0.828819 | 7.27E-55 | -1.69E-46 |
| MS.gene058549 | MS.gene59948 | 0.817155 | 3.82E-52 | -1.69E-46 |
| MS.gene058595 | MS.gene59948 | 0.829238 | 5.76E-55 | -1.69E-46 |
| MS.gene059128 | MS.gene59948 | 0.80548 | 1.31E-49 | -1.69E-46 |
| MS.gene059160 | MS.gene59948 | 0.801638 | 8.19E-49 | -1.69E-46 |
| MS.gene059161 | MS.gene59948 | 0.871975 | 4.53E-67 | -1.69E-46 |
| MS.gene059162 | MS.gene59948 | 0.819901 | 9.10E-53 | -1.69E-46 |
| MS.gene059283 | MS.gene59948 | 0.844753 | 6.22E-59 | -1.69E-46 |
| MS.gene059607 | MS.gene59948 | 0.805543 | 1.27E-49 | -1.69E-46 |
| MS.gene059609 | MS.gene59948 | 0.890612 | 8.41E-74 | -1.69E-46 |
| MS.gene059725 | MS.gene59948 | 0.803393 | 3.56E-49 | -1.69E-46 |
| MS.gene05979 | MS.gene59948 | 0.836479 | 9.14E-57 | -1.69E-46 |
| MS.gene059842 | MS.gene59948 | 0.84427 | 8.39E-59 | -1.69E-46 |
| MS.gene060011 | MS.gene59948 | 0.83629 | 1.02E-56 | -1.69E-46 |
| MS.gene060137 | MS.gene59948 | -0.835449 | 1.67E-56 | -1.69E-46 |
| MS.gene060296 | MS.gene59948 | 0.820826 | 5.59E-53 | -1.69E-46 |
| MS.gene060310 | MS.gene59948 | 0.808691 | 2.74E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene59948 | 0.863021 | 3.35E-64 | -1.69E-46 |
| MS.gene06052 | MS.gene59948 | 0.836927 | 7.02E-57 | -1.69E-46 |
| MS.gene060683 | MS.gene59948 | 0.86163 | 8.97E-64 | -1.69E-46 |
| MS.gene060685 | MS.gene59948 | 0.853615 | 2.13E-61 | -1.69E-46 |
| MS.gene060802 | MS.gene59948 | 0.99056 | 3.21E-183 | -1.69E-46 |
| MS.gene060803 | MS.gene59948 | 0.918688 | 1.14E-86 | -1.69E-46 |
| MS.gene060850 | MS.gene59948 | 0.802583 | 5.24E-49 | -1.69E-46 |
| MS.gene060851 | MS.gene59948 | 0.800311 | 1.53E-48 | -1.69E-46 |
| MS.gene060998 | MS.gene59948 | 0.842272 | 2.86E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59948.t1 | MTR_4g114770 | 88.268 | 358 | 25 | 2 | 1 | 345 | 1 | 354 | 0.0 | 577 |
| MS.gene59948.t1 | MTR_4g114770 | 87.267 | 322 | 24 | 2 | 37 | 345 | 15 | 332 | 0.0 | 533 |
| MS.gene59948.t1 | MTR_0339s0010 | 87.227 | 321 | 24 | 2 | 38 | 345 | 1 | 317 | 0.0 | 531 |
| MS.gene59948.t1 | MTR_0339s0020 | 92.593 | 324 | 19 | 2 | 1 | 324 | 1 | 319 | 0.0 | 512 |
| MS.gene59948.t1 | MTR_4g114785 | 90.291 | 206 | 16 | 1 | 1 | 206 | 1 | 202 | 5.12e-106 | 310 |
| MS.gene59948.t1 | MTR_6g060860 | 70.400 | 125 | 36 | 1 | 1 | 125 | 1 | 124 | 1.91e-56 | 181 |
| MS.gene59948.t1 | MTR_6g060860 | 70.400 | 125 | 36 | 1 | 1 | 125 | 42 | 165 | 7.31e-56 | 180 |
| MS.gene59948.t1 | MTR_6g060845 | 64.539 | 141 | 46 | 2 | 1 | 138 | 1 | 140 | 1.85e-55 | 178 |
| MS.gene59948.t1 | MTR_6g060685 | 69.600 | 125 | 37 | 1 | 1 | 125 | 42 | 165 | 2.68e-54 | 177 |
| MS.gene59948.t1 | MTR_6g060845 | 60.577 | 104 | 37 | 2 | 38 | 138 | 22 | 124 | 3.85e-37 | 130 |
| MS.gene59948.t1 | MTR_6g052050 | 65.169 | 89 | 29 | 1 | 37 | 125 | 27 | 113 | 2.42e-34 | 122 |
| MS.gene59948.t1 | MTR_4g010210 | 65.476 | 84 | 27 | 2 | 37 | 119 | 2 | 84 | 1.32e-29 | 117 |
| MS.gene59948.t1 | MTR_6g466310 | 55.405 | 74 | 29 | 1 | 67 | 136 | 1 | 74 | 1.93e-17 | 76.6 |
| MS.gene59948.t1 | MTR_6g465040 | 55.405 | 74 | 29 | 1 | 67 | 136 | 1 | 74 | 1.93e-17 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59948.t1 | AT1G15340 | 58.879 | 107 | 41 | 3 | 21 | 126 | 5 | 109 | 2.61e-35 | 132 |
| MS.gene59948.t1 | AT3G15790 | 58.929 | 112 | 42 | 3 | 18 | 127 | 2 | 111 | 2.16e-34 | 127 |
| MS.gene59948.t1 | AT3G15790 | 58.929 | 112 | 42 | 3 | 18 | 127 | 2 | 111 | 2.16e-34 | 127 |
| MS.gene59948.t1 | AT3G15790 | 58.929 | 112 | 42 | 3 | 18 | 127 | 2 | 111 | 2.16e-34 | 127 |
| MS.gene59948.t1 | AT1G15340 | 60.784 | 51 | 20 | 0 | 22 | 72 | 6 | 56 | 1.45e-17 | 82.8 |
Find 96 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTTTCTGCTACGTTTCTT+AGG | 0.205617 | 8.3:+12656109 | None:intergenic |
| ACAATTCTCGATGATCTTCT+TGG | 0.243354 | 8.3:+12656178 | None:intergenic |
| CAATCAAATTCCGATATGTT+TGG | 0.322423 | 8.3:+12656217 | None:intergenic |
| ATACTTCTCCAGATGCCTTT+TGG | 0.335850 | 8.3:+12656258 | None:intergenic |
| TCCATCTGGTTGGACCAAAA+AGG | 0.337926 | 8.3:-12658518 | MS.gene59948:intron |
| CGGAATTTGATTGGGGCACT+GGG | 0.341266 | 8.3:-12656207 | MS.gene59948:CDS |
| TCCTGCTTTGTATCCTCTGC+TGG | 0.352023 | 8.3:+12655725 | None:intergenic |
| ACGAAGCAAGATGGTGGATC+TGG | 0.352435 | 8.3:-12655635 | MS.gene59948:CDS |
| CAAACATATCGGAATTTGAT+TGG | 0.360294 | 8.3:-12656216 | MS.gene59948:CDS |
| GTCTGGAGTTGTTCAGAATA+AGG | 0.361170 | 8.3:-12655807 | MS.gene59948:CDS |
| TCGGAATTTGATTGGGGCAC+TGG | 0.370091 | 8.3:-12656208 | MS.gene59948:CDS |
| GGTGCTGTCGGTGCAGCTGC+AGG | 0.374683 | 8.3:-12658577 | MS.gene59948:CDS |
| TCCAACGAAACAGGCTCTTC+TGG | 0.378309 | 8.3:+12658550 | None:intergenic |
| ACTTTCTGCTACGTTTCTTA+GGG | 0.378522 | 8.3:+12656110 | None:intergenic |
| TCTTGCTTTGTCTCCTCTGC+TGG | 0.384252 | 8.3:+12655764 | None:intergenic |
| AATCAAATTCCGATATGTTT+GGG | 0.391168 | 8.3:+12656218 | None:intergenic |
| AAACATATCGGAATTTGATT+GGG | 0.399027 | 8.3:-12656215 | MS.gene59948:CDS |
| TCTTGTTTCGTCTCCTCCAC+TGG | 0.409874 | 8.3:+12655686 | None:intergenic |
| TCAGTTGAGAAGGAAGGTTC+TGG | 0.420268 | 8.3:-12658598 | MS.gene59948:CDS |
| TCTTGTCGCGTCTTTCTCCT+TGG | 0.423678 | 8.3:+12655505 | None:intergenic |
| AACAGGATCACCCGCGAGGC+TGG | 0.430826 | 8.3:-12655536 | MS.gene59948:CDS |
| AATAAGGATGTAGAAAAGAT+TGG | 0.432064 | 8.3:-12655791 | MS.gene59948:CDS |
| GACAAAGGAGCTGAGGGGTC+TGG | 0.432101 | 8.3:-12655824 | MS.gene59948:CDS |
| ATTGTGTTCACTTCACCAAC+AGG | 0.434194 | 8.3:-12656295 | MS.gene59948:CDS |
| GCAGGTAGCTCCAACGAAAC+AGG | 0.435285 | 8.3:+12658541 | None:intergenic |
| AAAATAAAGAGGAAGATAAC+AGG | 0.438541 | 8.3:-12655553 | MS.gene59948:CDS |
| CGAAGCAAGATGGTGGATCT+GGG | 0.446842 | 8.3:-12655634 | MS.gene59948:CDS |
| TTGGAGCTACCTGCTCCATC+TGG | 0.447780 | 8.3:-12658532 | MS.gene59948:CDS |
| TCTTGCTTCGTCTCCTCCAC+TGG | 0.448961 | 8.3:+12655647 | None:intergenic |
| ACAAAGCAAGAAGAAAAGAT+TGG | 0.458501 | 8.3:-12655752 | MS.gene59948:CDS |
| TAACGGTGGCCCAAACATAT+CGG | 0.461224 | 8.3:-12656227 | MS.gene59948:CDS |
| GATCCGTACCAAAAGGCATC+TGG | 0.466902 | 8.3:-12656266 | MS.gene59948:CDS |
| GCAAGAAGCTGGTGAAACTA+AGG | 0.470297 | 8.3:-12656026 | MS.gene59948:CDS |
| GGTTTCACCTCCAGCCTCGC+GGG | 0.474470 | 8.3:+12655526 | None:intergenic |
| TAACGAAAATGAAGATAAGA+AGG | 0.479634 | 8.3:-12655969 | MS.gene59948:CDS |
| GAATCAGAGGTGACTGTGAA+TGG | 0.479774 | 8.3:-12655437 | MS.gene59948:CDS |
| CAAGTCTCCATCAGCAGTGT+TGG | 0.480380 | 8.3:+12655871 | None:intergenic |
| GCAATATAAGTAGTTTCTCC+AGG | 0.485009 | 8.3:+12655911 | None:intergenic |
| GGGAAATCCAACACTGCTGA+TGG | 0.499797 | 8.3:-12655878 | MS.gene59948:CDS |
| TGCTGAGAAAACGGCTGAAG+TGG | 0.506220 | 8.3:-12655582 | MS.gene59948:CDS |
| AGCTACCTGCTCCATCTGGT+TGG | 0.512073 | 8.3:-12658528 | MS.gene59948:CDS |
| CAAGGATTTAGAGCCGGAAA+AGG | 0.515807 | 8.3:-12655999 | MS.gene59948:CDS |
| TACTTATATTGCAAAGGATG+AGG | 0.518178 | 8.3:-12655900 | MS.gene59948:CDS |
| GCCAGCAGAGGATACAAAGC+AGG | 0.518269 | 8.3:-12655726 | MS.gene59948:CDS |
| TGCCCCTACTGCTGAGAAAA+CGG | 0.519959 | 8.3:-12655591 | MS.gene59948:CDS |
| TTGGTCCAACCAGATGGAGC+AGG | 0.524315 | 8.3:+12658523 | None:intergenic |
| GTACGGATCTCGTCTCCTGT+TGG | 0.530266 | 8.3:+12656280 | None:intergenic |
| TGAAGATAAGAAGGGAGCAG+AGG | 0.540299 | 8.3:-12655960 | MS.gene59948:CDS |
| ACTTATATTGCAAAGGATGA+GGG | 0.544601 | 8.3:-12655899 | MS.gene59948:CDS |
| GACGTGGAAATGCAAGAAGC+TGG | 0.545188 | 8.3:-12656037 | MS.gene59948:CDS |
| GAGACGAGATCCGTACCAAA+AGG | 0.546382 | 8.3:-12656273 | MS.gene59948:CDS |
| CTTTCTGCTACGTTTCTTAG+GGG | 0.561874 | 8.3:+12656111 | None:intergenic |
| ACCAGAAGAGCCTGTTTCGT+TGG | 0.564563 | 8.3:-12658551 | MS.gene59948:CDS |
| AGTAGTTTCTCCAGGTCGAA+TGG | 0.564767 | 8.3:+12655919 | None:intergenic |
| GGATGACAAGGATTTAGAGC+CGG | 0.567635 | 8.3:-12656005 | MS.gene59948:CDS |
| GAGAAGTATTTGAAAACTAA+CGG | 0.568076 | 8.3:-12656244 | MS.gene59948:CDS |
| AGAAAAGATCGGACAGCCAG+TGG | 0.571358 | 8.3:-12655663 | MS.gene59948:CDS |
| TTCAAAGAAAGAAGCTTCTG+AGG | 0.575578 | 8.3:-12656080 | MS.gene59948:CDS |
| AGCTTCTGAGGACGAAGCAG+AGG | 0.581963 | 8.3:-12656068 | MS.gene59948:CDS |
| TGGTTTCACCTCCAGCCTCG+CGG | 0.583893 | 8.3:+12655525 | None:intergenic |
| ATCATCGAGAATTGTTGAGA+AGG | 0.584060 | 8.3:-12656170 | MS.gene59948:CDS |
| AGAAACTACTTATATTGCAA+AGG | 0.585396 | 8.3:-12655906 | MS.gene59948:CDS |
| TTTCTGCTACGTTTCTTAGG+GGG | 0.591296 | 8.3:+12656112 | None:intergenic |
| AACATATCGGAATTTGATTG+GGG | 0.594084 | 8.3:-12656214 | MS.gene59948:CDS |
| GCGAGTTCAGTTGAGAAGGA+AGG | 0.595479 | 8.3:-12658604 | MS.gene59948:CDS |
| ACGAAACAAGAAGAAAAGAT+CGG | 0.598053 | 8.3:-12655674 | MS.gene59948:CDS |
| ATTGACGACAAAGGAGCTGA+GGG | 0.598436 | 8.3:-12655830 | MS.gene59948:CDS |
| AGAAAAGATTGAACAGCCAG+TGG | 0.600966 | 8.3:-12655702 | MS.gene59948:CDS |
| GTGGAGGAGACGAAGCAAGA+TGG | 0.601635 | 8.3:-12655644 | MS.gene59948:CDS |
| AACGAAAATGAAGATAAGAA+GGG | 0.604794 | 8.3:-12655968 | MS.gene59948:CDS |
| GAGGAGACGAAGCAAGATGG+TGG | 0.606090 | 8.3:-12655641 | MS.gene59948:CDS |
| CTTATATTGCAAAGGATGAG+GGG | 0.609242 | 8.3:-12655898 | MS.gene59948:CDS |
| AAGGAAGGTTCTGGTGCTGT+CGG | 0.610581 | 8.3:-12658589 | MS.gene59948:CDS |
| AAAGAGAATATTGACGACAA+AGG | 0.610881 | 8.3:-12655839 | MS.gene59948:CDS |
| GCATGATGAAGCAAACTACA+AGG | 0.614302 | 8.3:-12655480 | MS.gene59948:CDS |
| AGTGGATGGCGAAAATAAAG+AGG | 0.614877 | 8.3:-12655564 | MS.gene59948:CDS |
| AGGATCACCCGCGAGGCTGG+AGG | 0.615049 | 8.3:-12655533 | MS.gene59948:CDS |
| TATGAACAAGGCTGAATCAG+AGG | 0.619422 | 8.3:-12655450 | MS.gene59948:CDS |
| GTTAAAGAGTCCATTCGACC+TGG | 0.624144 | 8.3:-12655929 | MS.gene59948:CDS |
| AATGGCGAGTTCAGTTGAGA+AGG | 0.627741 | 8.3:-12658608 | MS.gene59948:CDS |
| TATTGACGACAAAGGAGCTG+AGG | 0.627859 | 8.3:-12655831 | MS.gene59948:CDS |
| CAAGGTTCATGATATGAACA+AGG | 0.632417 | 8.3:-12655462 | MS.gene59948:CDS |
| GAGAAAACGGCTGAAGTGGA+TGG | 0.633447 | 8.3:-12655578 | MS.gene59948:CDS |
| TGGTGAAACTAAGGATGACA+AGG | 0.634779 | 8.3:-12656017 | MS.gene59948:CDS |
| GAAGCAAGATGGTGGATCTG+GGG | 0.642765 | 8.3:-12655633 | MS.gene59948:CDS |
| AAAGATTGAACAGCCAGTGG+AGG | 0.643021 | 8.3:-12655699 | MS.gene59948:CDS |
| AGCAGAGGAGACAAAAGACG+TGG | 0.647050 | 8.3:-12656053 | MS.gene59948:CDS |
| AAAGATCGGACAGCCAGTGG+AGG | 0.654588 | 8.3:-12655660 | MS.gene59948:CDS |
| GAGAATTGTTGAGAAGGTCA+AGG | 0.659236 | 8.3:-12656164 | MS.gene59948:CDS |
| AAAGATTGGACTGCCAGCAG+AGG | 0.662242 | 8.3:-12655777 | MS.gene59948:CDS |
| AAAGATTGGACAGCCAGCAG+AGG | 0.666945 | 8.3:-12655738 | MS.gene59948:CDS |
| CGAGGCTGGAGGTGAAACCA+AGG | 0.671676 | 8.3:-12655522 | MS.gene59948:CDS |
| GGAATTTGATTGGGGCACTG+GGG | 0.689173 | 8.3:-12656206 | MS.gene59948:CDS |
| TTGACGACAAAGGAGCTGAG+GGG | 0.744956 | 8.3:-12655829 | MS.gene59948:CDS |
| AGATAACAGGATCACCCGCG+AGG | 0.747714 | 8.3:-12655540 | MS.gene59948:CDS |
| AAGTATTTGAAAACTAACGG+TGG | 0.749054 | 8.3:-12656241 | MS.gene59948:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAGAAAAAAAAATCAT+TGG | + | chr8.3:12656785-12656804 | None:intergenic | 10.0% |
| !!! | GTTTTGTAATTTTAAATATT+TGG | - | chr8.3:12656030-12656049 | MS.gene59948:CDS | 10.0% |
| !! | TTTACTTCAAGTATTAAAAA+AGG | + | chr8.3:12656721-12656740 | None:intergenic | 15.0% |
| !!! | ATTTTAAATATTTGGTGAAA+TGG | - | chr8.3:12656038-12656057 | MS.gene59948:CDS | 15.0% |
| !!! | TTGTTTGAATTTTCAATTTT+AGG | - | chr8.3:12655554-12655573 | MS.gene59948:CDS | 15.0% |
| !!! | TTTTAAATATTTGGTGAAAT+GGG | - | chr8.3:12656039-12656058 | MS.gene59948:CDS | 15.0% |
| !!! | TTTTTTTTACAATGATAGAT+GGG | - | chr8.3:12656296-12656315 | MS.gene59948:CDS | 15.0% |
| !! | AAAAATGTAATAGTTAGACT+TGG | + | chr8.3:12656386-12656405 | None:intergenic | 20.0% |
| !! | ATAGTTATTACACATTTACA+TGG | + | chr8.3:12656617-12656636 | None:intergenic | 20.0% |
| !! | ATTGTATAATACATAACTAG+AGG | - | chr8.3:12656910-12656929 | MS.gene59948:intron | 20.0% |
| !! | CATCTATCATTGTAAAAAAA+AGG | + | chr8.3:12656297-12656316 | None:intergenic | 20.0% |
| !! | GTCAGGAAATATTATAATAA+TGG | + | chr8.3:12656666-12656685 | None:intergenic | 20.0% |
| !! | TAAAATTACAAAACCAAAGT+AGG | + | chr8.3:12656024-12656043 | None:intergenic | 20.0% |
| !! | TTGTATAATACATAACTAGA+GGG | - | chr8.3:12656911-12656930 | MS.gene59948:intron | 20.0% |
| !!! | AAAAATTAGAACAACCTTTT+TGG | + | chr8.3:12655536-12655555 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTACAATGATAGA+TGG | - | chr8.3:12656295-12656314 | MS.gene59948:CDS | 20.0% |
| !!! | GATTTTGGTTTTCATAATTA+GGG | - | chr8.3:12655673-12655692 | MS.gene59948:CDS | 20.0% |
| !!! | TGATTTTGGTTTTCATAATT+AGG | - | chr8.3:12655672-12655691 | MS.gene59948:CDS | 20.0% |
| !!! | TTTATAACATGCTTTGATTT+TGG | - | chr8.3:12655658-12655677 | MS.gene59948:CDS | 20.0% |
| !!! | TTTTAATTGAGTATTCTCAA+GGG | - | chr8.3:12657509-12657528 | MS.gene59948:intron | 20.0% |
| !!! | TTTTTAATTGAGTATTCTCA+AGG | - | chr8.3:12657508-12657527 | MS.gene59948:intron | 20.0% |
| ! | AAAAAAGGTTGTTACATAGT+GGG | + | chr8.3:12656706-12656725 | None:intergenic | 25.0% |
| ! | AAAATAAAGAGGAAGATAAC+AGG | - | chr8.3:12658484-12658503 | MS.gene59948:intron | 25.0% |
| ! | AAACATATCGGAATTTGATT+GGG | - | chr8.3:12657822-12657841 | MS.gene59948:intron | 25.0% |
| ! | AACGAAAATGAAGATAAGAA+GGG | - | chr8.3:12658069-12658088 | MS.gene59948:intron | 25.0% |
| ! | AATAAGGATGTAGAAAAGAT+TGG | - | chr8.3:12658246-12658265 | MS.gene59948:intron | 25.0% |
| ! | AATCAAATTCCGATATGTTT+GGG | + | chr8.3:12657822-12657841 | None:intergenic | 25.0% |
| ! | AGAAACTACTTATATTGCAA+AGG | - | chr8.3:12658131-12658150 | MS.gene59948:intron | 25.0% |
| ! | GAAAAAATAGTGAGTTTGTA+TGG | + | chr8.3:12656867-12656886 | None:intergenic | 25.0% |
| ! | GTGTTTATTTGTTTGTTCTA+GGG | - | chr8.3:12656232-12656251 | MS.gene59948:CDS | 25.0% |
| ! | TAAAAAAGGTTGTTACATAG+TGG | + | chr8.3:12656707-12656726 | None:intergenic | 25.0% |
| ! | TAACGAAAATGAAGATAAGA+AGG | - | chr8.3:12658068-12658087 | MS.gene59948:intron | 25.0% |
| ! | TCTTGTAAAAGTTAACAACT+TGG | - | chr8.3:12657599-12657618 | MS.gene59948:intron | 25.0% |
| ! | TGTATAATACATAACTAGAG+GGG | - | chr8.3:12656912-12656931 | MS.gene59948:intron | 25.0% |
| ! | TGTGTTTATTTGTTTGTTCT+AGG | - | chr8.3:12656231-12656250 | MS.gene59948:CDS | 25.0% |
| !! | AAGATTCATGTCTAAGATTT+AGG | - | chr8.3:12655764-12655783 | MS.gene59948:CDS | 25.0% |
| !! | TATTTTGTTCTCTGAATTTG+AGG | - | chr8.3:12655787-12655806 | MS.gene59948:CDS | 25.0% |
| !! | TGTTAACTTTTACAAGACTT+TGG | + | chr8.3:12657596-12657615 | None:intergenic | 25.0% |
| !!! | AACACAATCTCATTTTTCTT+GGG | + | chr8.3:12657730-12657749 | None:intergenic | 25.0% |
| !!! | AATTTTTTGATCAAGAGAAG+AGG | - | chr8.3:12657477-12657496 | MS.gene59948:intron | 25.0% |
| !!! | ACAAACTCACTATTTTTTCT+AGG | - | chr8.3:12656868-12656887 | MS.gene59948:intron | 25.0% |
| !!! | GAGAAGTATTTGAAAACTAA+CGG | - | chr8.3:12657793-12657812 | MS.gene59948:intron | 25.0% |
| !!! | TAATTCTTTGATTTTCGTGT+TGG | - | chr8.3:12655611-12655630 | MS.gene59948:CDS | 25.0% |
| !!! | TTTTTGGTACATAGAAGAAA+TGG | - | chr8.3:12657287-12657306 | MS.gene59948:intron | 25.0% |
| AAAATATACTTGAGCCAGTA+GGG | + | chr8.3:12656450-12656469 | None:intergenic | 30.0% | |
| AAAGAGAATATTGACGACAA+AGG | - | chr8.3:12658198-12658217 | MS.gene59948:intron | 30.0% | |
| AACACAAAAATGGACACATA+TGG | + | chr8.3:12657074-12657093 | None:intergenic | 30.0% | |
| AACATATCGGAATTTGATTG+GGG | - | chr8.3:12657823-12657842 | MS.gene59948:intron | 30.0% | |
| AAGTATTTGAAAACTAACGG+TGG | - | chr8.3:12657796-12657815 | MS.gene59948:intron | 30.0% | |
| AATAGTTAGACTTGGATAAC+AGG | + | chr8.3:12656378-12656397 | None:intergenic | 30.0% | |
| ACAAAGCAAGAAGAAAAGAT+TGG | - | chr8.3:12658285-12658304 | MS.gene59948:intron | 30.0% | |
| ACGAAACAAGAAGAAAAGAT+CGG | - | chr8.3:12658363-12658382 | MS.gene59948:intron | 30.0% | |
| ACGGTATTTCTTAAATTGTG+AGG | - | chr8.3:12655882-12655901 | MS.gene59948:CDS | 30.0% | |
| ACTTATATTGCAAAGGATGA+GGG | - | chr8.3:12658138-12658157 | MS.gene59948:intron | 30.0% | |
| AGTGAGTTTGTATGGAAATT+GGG | + | chr8.3:12656859-12656878 | None:intergenic | 30.0% | |
| ATGACCAAGAAACACAAAAA+TGG | + | chr8.3:12657084-12657103 | None:intergenic | 30.0% | |
| CAAACATATCGGAATTTGAT+TGG | - | chr8.3:12657821-12657840 | MS.gene59948:intron | 30.0% | |
| CAATCAAATTCCGATATGTT+TGG | + | chr8.3:12657823-12657842 | None:intergenic | 30.0% | |
| CCAAAAACAAAAAACACCAT+AGG | + | chr8.3:12657274-12657293 | None:intergenic | 30.0% | |
| GAAAGAAAATATACTAAGCC+TGG | + | chr8.3:12656417-12656436 | None:intergenic | 30.0% | |
| GTATTATACAATAACCCAGA+GGG | + | chr8.3:12656902-12656921 | None:intergenic | 30.0% | |
| TACTTATATTGCAAAGGATG+AGG | - | chr8.3:12658137-12658156 | MS.gene59948:intron | 30.0% | |
| TAGTGAGTTTGTATGGAAAT+TGG | + | chr8.3:12656860-12656879 | None:intergenic | 30.0% | |
| TGAGGAATTGTATAGTTTCT+GGG | - | chr8.3:12655805-12655824 | MS.gene59948:CDS | 30.0% | |
| TGTATTATACAATAACCCAG+AGG | + | chr8.3:12656903-12656922 | None:intergenic | 30.0% | |
| TTGAGGAATTGTATAGTTTC+TGG | - | chr8.3:12655804-12655823 | MS.gene59948:CDS | 30.0% | |
| TTTGCTTAAAGTGTACATTG+TGG | - | chr8.3:12655980-12655999 | MS.gene59948:CDS | 30.0% | |
| ! | ACGACTTTTGTGCATTTTAT+AGG | - | chr8.3:12656158-12656177 | MS.gene59948:CDS | 30.0% |
| ! | ATTTTCTTGAGACAAACAGT+TGG | - | chr8.3:12656973-12656992 | MS.gene59948:intron | 30.0% |
| ! | GGTTTTCATAATTAGGGATT+TGG | - | chr8.3:12655679-12655698 | MS.gene59948:CDS | 30.0% |
| ! | TATATTTTCTTTCACACACC+AGG | - | chr8.3:12656462-12656481 | MS.gene59948:intron | 30.0% |
| ! | TCATTGATCTTCTTTTCACT+TGG | - | chr8.3:12656106-12656125 | MS.gene59948:CDS | 30.0% |
| ! | TTTGTGCATTTTATAGGTCT+TGG | - | chr8.3:12656164-12656183 | MS.gene59948:CDS | 30.0% |
| !! | GAACACAATCTCATTTTTCT+TGG | + | chr8.3:12657731-12657750 | None:intergenic | 30.0% |
| !! | GTGTTTGTTTTCTAAACGAT+AGG | - | chr8.3:12656333-12656352 | MS.gene59948:CDS | 30.0% |
| !! | TTACATTTTTGTTTAGCACC+AGG | - | chr8.3:12656396-12656415 | MS.gene59948:intron | 30.0% |
| !!! | CCTATGGTGTTTTTTGTTTT+TGG | - | chr8.3:12657271-12657290 | MS.gene59948:intron | 30.0% |
| !!! | CTATTACTGCAGTTTTAGAT+TGG | - | chr8.3:12657029-12657048 | MS.gene59948:intron | 30.0% |
| AAAAATCATTGGCGATTGCA+TGG | + | chr8.3:12656774-12656793 | None:intergenic | 35.0% | |
| AAAATCATTGGCGATTGCAT+GGG | + | chr8.3:12656773-12656792 | None:intergenic | 35.0% | |
| AAGAAATCATTACCATCCCA+TGG | + | chr8.3:12656195-12656214 | None:intergenic | 35.0% | |
| ACAATTCTCGATGATCTTCT+TGG | + | chr8.3:12657862-12657881 | None:intergenic | 35.0% | |
| ACTTTCTGCTACGTTTCTTA+GGG | + | chr8.3:12657930-12657949 | None:intergenic | 35.0% | |
| AGAAATACCGTCACGAAAAT+AGG | + | chr8.3:12655873-12655892 | None:intergenic | 35.0% | |
| ATACCCACATATAAGTCAGT+AGG | - | chr8.3:12656568-12656587 | MS.gene59948:intron | 35.0% | |
| ATAGGTCTTGGATTTACCAT+GGG | - | chr8.3:12656176-12656195 | MS.gene59948:CDS | 35.0% | |
| ATCATCGAGAATTGTTGAGA+AGG | - | chr8.3:12657867-12657886 | MS.gene59948:intron | 35.0% | |
| ATGATACAAACAACTAGCTC+AGG | + | chr8.3:12656090-12656109 | None:intergenic | 35.0% | |
| ATTAACCTTGTTCAGTCTGA+AGG | + | chr8.3:12657190-12657209 | None:intergenic | 35.0% | |
| CAAGGTTCATGATATGAACA+AGG | - | chr8.3:12658575-12658594 | MS.gene59948:CDS | 35.0% | |
| CAGACTGAACAAGGTTAATT+TGG | - | chr8.3:12657191-12657210 | MS.gene59948:intron | 35.0% | |
| CAGTTCTTTCCAAAAAAGTC+AGG | - | chr8.3:12657700-12657719 | MS.gene59948:intron | 35.0% | |
| CATTTACATGGTAAGAAACG+TGG | + | chr8.3:12656605-12656624 | None:intergenic | 35.0% | |
| CTGAATGGAAGGATTAAAGA+GGG | - | chr8.3:12657155-12657174 | MS.gene59948:intron | 35.0% | |
| CTTATATTGCAAAGGATGAG+GGG | - | chr8.3:12658139-12658158 | MS.gene59948:intron | 35.0% | |
| GAAAATATACTTGAGCCAGT+AGG | + | chr8.3:12656451-12656470 | None:intergenic | 35.0% | |
| GAAATACCGTCACGAAAATA+GGG | + | chr8.3:12655872-12655891 | None:intergenic | 35.0% | |
| GCAAAAATGCCGAAATTGTT+AGG | + | chr8.3:12657380-12657399 | None:intergenic | 35.0% | |
| GCAATATAAGTAGTTTCTCC+AGG | + | chr8.3:12658129-12658148 | None:intergenic | 35.0% | |
| TACATTGTGGCTTACTCTTT+GGG | - | chr8.3:12655993-12656012 | MS.gene59948:CDS | 35.0% | |
| TACCCACATATAAGTCAGTA+GGG | - | chr8.3:12656569-12656588 | MS.gene59948:intron | 35.0% | |
| TATAGGTCTTGGATTTACCA+TGG | - | chr8.3:12656175-12656194 | MS.gene59948:CDS | 35.0% | |
| TTCAAAGAAAGAAGCTTCTG+AGG | - | chr8.3:12657957-12657976 | MS.gene59948:intron | 35.0% | |
| TTCACTTGGACTGTTAAACA+TGG | - | chr8.3:12656120-12656139 | MS.gene59948:CDS | 35.0% | |
| ! | AAGATCACATCAGGTTAGTT+AGG | + | chr8.3:12656831-12656850 | None:intergenic | 35.0% |
| ! | AGATCACATCAGGTTAGTTA+GGG | + | chr8.3:12656830-12656849 | None:intergenic | 35.0% |
| ! | TCGTTAACAACTTCCTTTTC+CGG | + | chr8.3:12658054-12658073 | None:intergenic | 35.0% |
| ! | TCTTTGGGAATTTCCTACTT+TGG | - | chr8.3:12656008-12656027 | MS.gene59948:CDS | 35.0% |
| !! | GTGTCCATTTTTGTGTTTCT+TGG | - | chr8.3:12657077-12657096 | MS.gene59948:intron | 35.0% |
| !!! | CTGCAGTTTTAGATTGGAAA+TGG | - | chr8.3:12657035-12657054 | MS.gene59948:intron | 35.0% |
| AAAAGCCTTCAGACTGAACA+AGG | - | chr8.3:12657182-12657201 | MS.gene59948:intron | 40.0% | |
| AAATGCCGAAATTGTTAGGC+CGG | + | chr8.3:12657376-12657395 | None:intergenic | 40.0% | |
| AACAAACACTATACCCCATG+AGG | + | chr8.3:12656322-12656341 | None:intergenic | 40.0% | |
| ACTGCCTATGGTGTTTAACT+AGG | - | chr8.3:12657422-12657441 | MS.gene59948:intron | 40.0% | |
| ACTGTGTTCAACATACGATG+TGG | + | chr8.3:12656530-12656549 | None:intergenic | 40.0% | |
| AGAAAAGATTGAACAGCCAG+TGG | - | chr8.3:12658335-12658354 | MS.gene59948:intron | 40.0% | |
| AGAATCTTGAAAACCCTAGC+AGG | + | chr8.3:12655841-12655860 | None:intergenic | 40.0% | |
| AGTGCCTAGTTAAACACCAT+AGG | + | chr8.3:12657429-12657448 | None:intergenic | 40.0% | |
| AGTGGATGGCGAAAATAAAG+AGG | - | chr8.3:12658473-12658492 | MS.gene59948:intron | 40.0% | |
| ATTGTGTTCACTTCACCAAC+AGG | - | chr8.3:12657742-12657761 | MS.gene59948:intron | 40.0% | |
| CCTCTTTAATCCTTCCATTC+AGG | + | chr8.3:12657157-12657176 | None:intergenic | 40.0% | |
| CCTGAATGGAAGGATTAAAG+AGG | - | chr8.3:12657154-12657173 | MS.gene59948:intron | 40.0% | |
| CTTTCTGCTACGTTTCTTAG+GGG | + | chr8.3:12657929-12657948 | None:intergenic | 40.0% | |
| GACTTTCTGCTACGTTTCTT+AGG | + | chr8.3:12657931-12657950 | None:intergenic | 40.0% | |
| GAGAATTGTTGAGAAGGTCA+AGG | - | chr8.3:12657873-12657892 | MS.gene59948:intron | 40.0% | |
| GCATGATGAAGCAAACTACA+AGG | - | chr8.3:12658557-12658576 | MS.gene59948:CDS | 40.0% | |
| GCATGGGTTTGTAAAACTCA+GGG | + | chr8.3:12656757-12656776 | None:intergenic | 40.0% | |
| GTACATTGTGGCTTACTCTT+TGG | - | chr8.3:12655992-12656011 | MS.gene59948:CDS | 40.0% | |
| TATGAACAAGGCTGAATCAG+AGG | - | chr8.3:12658587-12658606 | MS.gene59948:CDS | 40.0% | |
| TATTTCCTGACATAGTGCAC+TGG | - | chr8.3:12656675-12656694 | MS.gene59948:intron | 40.0% | |
| TCATAAACTCACACACCAAG+TGG | - | chr8.3:12657318-12657337 | MS.gene59948:intron | 40.0% | |
| TGCATGGGTTTGTAAAACTC+AGG | + | chr8.3:12656758-12656777 | None:intergenic | 40.0% | |
| TGGTGAAACTAAGGATGACA+AGG | - | chr8.3:12658020-12658039 | MS.gene59948:intron | 40.0% | |
| TTCTTGGTCATTATGAGCCA+TGG | - | chr8.3:12657093-12657112 | MS.gene59948:intron | 40.0% | |
| TTTATCCAGTGCACTATGTC+AGG | + | chr8.3:12656683-12656702 | None:intergenic | 40.0% | |
| TTTCTGCTACGTTTCTTAGG+GGG | + | chr8.3:12657928-12657947 | None:intergenic | 40.0% | |
| ! | ATACTTCTCCAGATGCCTTT+TGG | + | chr8.3:12657782-12657801 | None:intergenic | 40.0% |
| ! | CTTGGTGTGTGAGTTTATGA+TGG | + | chr8.3:12657318-12657337 | None:intergenic | 40.0% |
| ! | GATCACATCAGGTTAGTTAG+GGG | + | chr8.3:12656829-12656848 | None:intergenic | 40.0% |
| ! | GTCTGGAGTTGTTCAGAATA+AGG | - | chr8.3:12658230-12658249 | MS.gene59948:intron | 40.0% |
| !! | AACTAGAGGGGCATCTATAT+TGG | - | chr8.3:12656924-12656943 | MS.gene59948:intron | 40.0% |
| !! | ATCAGTAAGAGAGTACTAGC+AGG | + | chr8.3:12657220-12657239 | None:intergenic | 40.0% |
| !! | CTCCCTACTGACTTATATGT+GGG | + | chr8.3:12656574-12656593 | None:intergenic | 40.0% |
| !! | TCAGTAAGAGAGTACTAGCA+GGG | + | chr8.3:12657219-12657238 | None:intergenic | 40.0% |
| !!! | TTGGGTGTTCCTGACTTTTT+TGG | + | chr8.3:12657712-12657731 | None:intergenic | 40.0% |
| AAAGATTGAACAGCCAGTGG+AGG | - | chr8.3:12658338-12658357 | MS.gene59948:intron | 45.0% | |
| AATGATAGATGGGCCTCATG+GGG | - | chr8.3:12656306-12656325 | MS.gene59948:CDS | 45.0% | |
| ACAATGATAGATGGGCCTCA+TGG | - | chr8.3:12656304-12656323 | MS.gene59948:CDS | 45.0% | |
| AGTAGTTTCTCCAGGTCGAA+TGG | + | chr8.3:12658121-12658140 | None:intergenic | 45.0% | |
| ATTGACGACAAAGGAGCTGA+GGG | - | chr8.3:12658207-12658226 | MS.gene59948:intron | 45.0% | |
| CAATGATAGATGGGCCTCAT+GGG | - | chr8.3:12656305-12656324 | MS.gene59948:CDS | 45.0% | |
| CCACATATAAGTCAGTAGGG+AGG | - | chr8.3:12656572-12656591 | MS.gene59948:intron | 45.0% | |
| CCAGTTGAGCTAGGACTTAT+GGG | - | chr8.3:12657399-12657418 | MS.gene59948:intron | 45.0% | |
| CTTCCATTCAGGCTATACCT+GGG | + | chr8.3:12657146-12657165 | None:intergenic | 45.0% | |
| GAATCAGAGGTGACTGTGAA+TGG | - | chr8.3:12658600-12658619 | MS.gene59948:CDS | 45.0% | |
| GCAAGAAGCTGGTGAAACTA+AGG | - | chr8.3:12658011-12658030 | MS.gene59948:intron | 45.0% | |
| GCACTGAAGACAAGTATCCA+TGG | + | chr8.3:12657113-12657132 | None:intergenic | 45.0% | |
| GTCTTGGATTTACCATGGGA+TGG | - | chr8.3:12656180-12656199 | MS.gene59948:CDS | 45.0% | |
| GTTAAAGAGTCCATTCGACC+TGG | - | chr8.3:12658108-12658127 | MS.gene59948:intron | 45.0% | |
| TAAACTCACACACCAAGTGG+AGG | - | chr8.3:12657321-12657340 | MS.gene59948:intron | 45.0% | |
| TAACGGTGGCCCAAACATAT+CGG | - | chr8.3:12657810-12657829 | MS.gene59948:intron | 45.0% | |
| TATACTTGAGCCAGTAGGGA+TGG | + | chr8.3:12656446-12656465 | None:intergenic | 45.0% | |
| TATTGACGACAAAGGAGCTG+AGG | - | chr8.3:12658206-12658225 | MS.gene59948:intron | 45.0% | |
| TCAGTTGAGAAGGAAGGTTC+TGG | - | chr8.3:12655439-12655458 | MS.gene59948:CDS | 45.0% | |
| TCCATCTGGTTGGACCAAAA+AGG | - | chr8.3:12655519-12655538 | MS.gene59948:CDS | 45.0% | |
| TGAAGATAAGAAGGGAGCAG+AGG | - | chr8.3:12658077-12658096 | MS.gene59948:intron | 45.0% | |
| TGCTAGCTCATAACTGCCTA+TGG | - | chr8.3:12657255-12657274 | MS.gene59948:intron | 45.0% | |
| TGGGAACTGAAGATCACATC+AGG | + | chr8.3:12656840-12656859 | None:intergenic | 45.0% | |
| TTGCTAACCAACACTAAGCC+TGG | + | chr8.3:12656483-12656502 | None:intergenic | 45.0% | |
| ! | CAAGGATTTAGAGCCGGAAA+AGG | - | chr8.3:12658038-12658057 | MS.gene59948:intron | 45.0% |
| ! | CTGTGTCCCTATTTTCGTGA+CGG | - | chr8.3:12655863-12655882 | MS.gene59948:CDS | 45.0% |
| ! | GCATTTTTGCCAGTTGAGCT+AGG | - | chr8.3:12657390-12657409 | MS.gene59948:intron | 45.0% |
| ! | GGATGACAAGGATTTAGAGC+CGG | - | chr8.3:12658032-12658051 | MS.gene59948:intron | 45.0% |
| ! | TCTCCAGATGCCTTTTGGTA+CGG | + | chr8.3:12657777-12657796 | None:intergenic | 45.0% |
| !! | ACCTTTTTGGTCCAACCAGA+TGG | + | chr8.3:12655523-12655542 | None:intergenic | 45.0% |
| !! | CCTCCCTACTGACTTATATG+TGG | + | chr8.3:12656575-12656594 | None:intergenic | 45.0% |
| !! | TTCTTAGGGGGCTCACTTTT+TGG | + | chr8.3:12657916-12657935 | None:intergenic | 45.0% |
| !!! | GGGTTTTGAGTTACCTGCTA+GGG | - | chr8.3:12655825-12655844 | MS.gene59948:CDS | 45.0% |
| !!! | TCACTTTTTGGTTCTGCTGG+AGG | + | chr8.3:12657904-12657923 | None:intergenic | 45.0% |
| !!! | TGGGTTTTGAGTTACCTGCT+AGG | - | chr8.3:12655824-12655843 | MS.gene59948:CDS | 45.0% |
| AAAGATTGGACAGCCAGCAG+AGG | - | chr8.3:12658299-12658318 | MS.gene59948:intron | 50.0% | |
| AAAGATTGGACTGCCAGCAG+AGG | - | chr8.3:12658260-12658279 | MS.gene59948:intron | 50.0% | |
| ACCAGAAGAGCCTGTTTCGT+TGG | - | chr8.3:12655486-12655505 | MS.gene59948:CDS | 50.0% | |
| AGAAAAGATCGGACAGCCAG+TGG | - | chr8.3:12658374-12658393 | MS.gene59948:intron | 50.0% | |
| AGCAGAGGAGACAAAAGACG+TGG | - | chr8.3:12657984-12658003 | MS.gene59948:intron | 50.0% | |
| AGGACTTATGGGACTGCCTA+TGG | - | chr8.3:12657410-12657429 | MS.gene59948:intron | 50.0% | |
| ATTCAGGCTATACCTGGGAG+AGG | + | chr8.3:12657141-12657160 | None:intergenic | 50.0% | |
| CAAGTCTCCATCAGCAGTGT+TGG | + | chr8.3:12658169-12658188 | None:intergenic | 50.0% | |
| CCAGGTATAGCCTGAATGGA+AGG | - | chr8.3:12657144-12657163 | MS.gene59948:intron | 50.0% | |
| CCCATAAGTCCTAGCTCAAC+TGG | + | chr8.3:12657402-12657421 | None:intergenic | 50.0% | |
| CCTTCCATTCAGGCTATACC+TGG | + | chr8.3:12657147-12657166 | None:intergenic | 50.0% | |
| GACGTCCGGCCTAACAATTT+CGG | - | chr8.3:12657368-12657387 | MS.gene59948:intron | 50.0% | |
| GACGTGGAAATGCAAGAAGC+TGG | - | chr8.3:12658000-12658019 | MS.gene59948:intron | 50.0% | |
| GAGAAAACGGCTGAAGTGGA+TGG | - | chr8.3:12658459-12658478 | MS.gene59948:intron | 50.0% | |
| GAGACGAGATCCGTACCAAA+AGG | - | chr8.3:12657764-12657783 | MS.gene59948:intron | 50.0% | |
| GATGTGGCTCATGCTCTAGT+CGG | + | chr8.3:12656514-12656533 | None:intergenic | 50.0% | |
| GCCAGTTGAGCTAGGACTTA+TGG | - | chr8.3:12657398-12657417 | MS.gene59948:intron | 50.0% | |
| GCGAGTTCAGTTGAGAAGGA+AGG | - | chr8.3:12655433-12655452 | MS.gene59948:CDS | 50.0% | |
| GGGAAATCCAACACTGCTGA+TGG | - | chr8.3:12658159-12658178 | MS.gene59948:intron | 50.0% | |
| TCACACACCAGGCTTAGTGT+TGG | - | chr8.3:12656473-12656492 | MS.gene59948:intron | 50.0% | |
| TCCAACGAAACAGGCTCTTC+TGG | + | chr8.3:12655490-12655509 | None:intergenic | 50.0% | |
| TCCTGCTTTGTATCCTCTGC+TGG | + | chr8.3:12658315-12658334 | None:intergenic | 50.0% | |
| TCGGAATTTGATTGGGGCAC+TGG | - | chr8.3:12657829-12657848 | MS.gene59948:intron | 50.0% | |
| TCTAGGTACATACGCCCTCT+GGG | - | chr8.3:12656885-12656904 | MS.gene59948:intron | 50.0% | |
| TCTCCCAGGTATAGCCTGAA+TGG | - | chr8.3:12657140-12657159 | MS.gene59948:intron | 50.0% | |
| TCTTGCTTTGTCTCCTCTGC+TGG | + | chr8.3:12658276-12658295 | None:intergenic | 50.0% | |
| TCTTGTCGCGTCTTTCTCCT+TGG | + | chr8.3:12658535-12658554 | None:intergenic | 50.0% | |
| TGCCCCTACTGCTGAGAAAA+CGG | - | chr8.3:12658446-12658465 | MS.gene59948:intron | 50.0% | |
| TGCTGAGAAAACGGCTGAAG+TGG | - | chr8.3:12658455-12658474 | MS.gene59948:intron | 50.0% | |
| TTCTAGGTACATACGCCCTC+TGG | - | chr8.3:12656884-12656903 | MS.gene59948:intron | 50.0% | |
| TTGACGACAAAGGAGCTGAG+GGG | - | chr8.3:12658208-12658227 | MS.gene59948:intron | 50.0% | |
| TTTCGACAGACCATCCCTAC+TGG | - | chr8.3:12656433-12656452 | MS.gene59948:intron | 50.0% | |
| ! | CGGAATTTGATTGGGGCACT+GGG | - | chr8.3:12657830-12657849 | MS.gene59948:intron | 50.0% |
| ! | TCTTGTTTCGTCTCCTCCAC+TGG | + | chr8.3:12658354-12658373 | None:intergenic | 50.0% |
| !! | AAGGAAGGTTCTGGTGCTGT+CGG | - | chr8.3:12655448-12655467 | MS.gene59948:CDS | 50.0% |
| !! | ACGAAGCAAGATGGTGGATC+TGG | - | chr8.3:12658402-12658421 | MS.gene59948:intron | 50.0% |
| !! | AGCCGTTTTCTCAGCAGTAG+GGG | + | chr8.3:12658451-12658470 | None:intergenic | 50.0% |
| !! | CAGCCGTTTTCTCAGCAGTA+GGG | + | chr8.3:12658452-12658471 | None:intergenic | 50.0% |
| !! | CGAAGCAAGATGGTGGATCT+GGG | - | chr8.3:12658403-12658422 | MS.gene59948:intron | 50.0% |
| !! | GAAGCAAGATGGTGGATCTG+GGG | - | chr8.3:12658404-12658423 | MS.gene59948:intron | 50.0% |
| !! | GATCCGTACCAAAAGGCATC+TGG | - | chr8.3:12657771-12657790 | MS.gene59948:intron | 50.0% |
| !! | GGAATTTGATTGGGGCACTG+GGG | - | chr8.3:12657831-12657850 | MS.gene59948:intron | 50.0% |
| !! | TCAGCCGTTTTCTCAGCAGT+AGG | + | chr8.3:12658453-12658472 | None:intergenic | 50.0% |
| !!! | GGCTCACTTTTTGGTTCTGC+TGG | + | chr8.3:12657907-12657926 | None:intergenic | 50.0% |
| AAAGATCGGACAGCCAGTGG+AGG | - | chr8.3:12658377-12658396 | MS.gene59948:intron | 55.0% | |
| AGATAACAGGATCACCCGCG+AGG | - | chr8.3:12658497-12658516 | MS.gene59948:intron | 55.0% | |
| AGCTACCTGCTCCATCTGGT+TGG | - | chr8.3:12655509-12655528 | MS.gene59948:CDS | 55.0% | |
| GAGGAGACGAAGCAAGATGG+TGG | - | chr8.3:12658396-12658415 | MS.gene59948:intron | 55.0% | |
| GCAGGTAGCTCCAACGAAAC+AGG | + | chr8.3:12655499-12655518 | None:intergenic | 55.0% | |
| GCCAGCAGAGGATACAAAGC+AGG | - | chr8.3:12658311-12658330 | MS.gene59948:intron | 55.0% | |
| GCTCATGCTCTAGTCGGCAT+TGG | + | chr8.3:12656508-12656527 | None:intergenic | 55.0% | |
| GTACGGATCTCGTCTCCTGT+TGG | + | chr8.3:12657760-12657779 | None:intergenic | 55.0% | |
| GTGGAGGAGACGAAGCAAGA+TGG | - | chr8.3:12658393-12658412 | MS.gene59948:intron | 55.0% | |
| TCTTGCTTCGTCTCCTCCAC+TGG | + | chr8.3:12658393-12658412 | None:intergenic | 55.0% | |
| TTGGAGCTACCTGCTCCATC+TGG | - | chr8.3:12655505-12655524 | MS.gene59948:CDS | 55.0% | |
| TTGGTCCAACCAGATGGAGC+AGG | + | chr8.3:12655517-12655536 | None:intergenic | 55.0% | |
| ! | AGCTTCTGAGGACGAAGCAG+AGG | - | chr8.3:12657969-12657988 | MS.gene59948:intron | 55.0% |
| CGAGGCTGGAGGTGAAACCA+AGG | - | chr8.3:12658515-12658534 | MS.gene59948:intron | 60.0% | |
| GACAAAGGAGCTGAGGGGTC+TGG | - | chr8.3:12658213-12658232 | MS.gene59948:intron | 60.0% | |
| GTTAGGCCGGACGTCTTGAC+CGG | + | chr8.3:12657363-12657382 | None:intergenic | 60.0% | |
| TCAGTGCTCACACCTCTCCC+AGG | - | chr8.3:12657126-12657145 | MS.gene59948:intron | 60.0% | |
| TGGTTTCACCTCCAGCCTCG+CGG | + | chr8.3:12658515-12658534 | None:intergenic | 60.0% | |
| TTAGGCCGGACGTCTTGACC+GGG | + | chr8.3:12657362-12657381 | None:intergenic | 60.0% | |
| ! | CACACACCAAGTGGAGGTGC+CGG | - | chr8.3:12657327-12657346 | MS.gene59948:intron | 60.0% |
| !! | ACACACCAAGTGGAGGTGCC+GGG | - | chr8.3:12657328-12657347 | MS.gene59948:intron | 60.0% |
| AACAGGATCACCCGCGAGGC+TGG | - | chr8.3:12658501-12658520 | MS.gene59948:intron | 65.0% | |
| CGAACCCCGGTCAAGACGTC+CGG | - | chr8.3:12657354-12657373 | MS.gene59948:intron | 65.0% | |
| CTTGACCGGGGTTCGAACCC+CGG | + | chr8.3:12657349-12657368 | None:intergenic | 65.0% | |
| GGTTTCACCTCCAGCCTCGC+GGG | + | chr8.3:12658514-12658533 | None:intergenic | 65.0% | |
| TAGGCCGGACGTCTTGACCG+GGG | + | chr8.3:12657361-12657380 | None:intergenic | 65.0% | |
| !! | CACACCAAGTGGAGGTGCCG+GGG | - | chr8.3:12657329-12657348 | MS.gene59948:intron | 65.0% |
| AGGATCACCCGCGAGGCTGG+AGG | - | chr8.3:12658504-12658523 | MS.gene59948:intron | 70.0% | |
| CGAACCCCGGCACCTCCACT+TGG | + | chr8.3:12657336-12657355 | None:intergenic | 70.0% | |
| ! | GGTGCTGTCGGTGCAGCTGC+AGG | - | chr8.3:12655460-12655479 | MS.gene59948:CDS | 70.0% |
| !! | AGGTGCCGGGGTTCGAACCC+CGG | - | chr8.3:12657341-12657360 | MS.gene59948:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 12655430 | 12658629 | 12655430 | ID=MS.gene59948 |
| chr8.3 | mRNA | 12655430 | 12658629 | 12655430 | ID=MS.gene59948.t1;Parent=MS.gene59948 |
| chr8.3 | exon | 12658519 | 12658629 | 12658519 | ID=MS.gene59948.t1.exon1;Parent=MS.gene59948.t1 |
| chr8.3 | CDS | 12658519 | 12658629 | 12658519 | ID=cds.MS.gene59948.t1;Parent=MS.gene59948.t1 |
| chr8.3 | exon | 12655430 | 12656356 | 12655430 | ID=MS.gene59948.t1.exon2;Parent=MS.gene59948.t1 |
| chr8.3 | CDS | 12655430 | 12656356 | 12655430 | ID=cds.MS.gene59948.t1;Parent=MS.gene59948.t1 |
| Gene Sequence |
| Protein sequence |
