Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87271.t1 | XP_003596614.1 | 94.4 | 341 | 19 | 0 | 1 | 341 | 1 | 341 | 1.50E-174 | 622.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87271.t1 | G7IHE1 | 94.4 | 341 | 19 | 0 | 1 | 341 | 1 | 341 | 1.1e-174 | 622.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049137 | MS.gene87271 | 0.884352 | 2.06E-71 | -1.69E-46 |
MS.gene049217 | MS.gene87271 | 0.809082 | 2.26E-50 | -1.69E-46 |
MS.gene049351 | MS.gene87271 | 0.839549 | 1.48E-57 | -1.69E-46 |
MS.gene049427 | MS.gene87271 | 0.822522 | 2.26E-53 | -1.69E-46 |
MS.gene049609 | MS.gene87271 | 0.831102 | 2.02E-55 | -1.69E-46 |
MS.gene049661 | MS.gene87271 | 0.806431 | 8.25E-50 | -1.69E-46 |
MS.gene049805 | MS.gene87271 | 0.872201 | 3.81E-67 | -1.69E-46 |
MS.gene050076 | MS.gene87271 | 0.828595 | 8.24E-55 | -1.69E-46 |
MS.gene050231 | MS.gene87271 | 0.82566 | 4.15E-54 | -1.69E-46 |
MS.gene050301 | MS.gene87271 | 0.805319 | 1.41E-49 | -1.69E-46 |
MS.gene050432 | MS.gene87271 | 0.815866 | 7.42E-52 | -1.69E-46 |
MS.gene050464 | MS.gene87271 | 0.80756 | 4.76E-50 | -1.69E-46 |
MS.gene050529 | MS.gene87271 | 0.81123 | 7.77E-51 | -1.69E-46 |
MS.gene050593 | MS.gene87271 | 0.83199 | 1.22E-55 | -1.69E-46 |
MS.gene050670 | MS.gene87271 | 0.866623 | 2.49E-65 | -1.69E-46 |
MS.gene050747 | MS.gene87271 | 0.846937 | 1.59E-59 | -1.69E-46 |
MS.gene050772 | MS.gene87271 | 0.822168 | 2.74E-53 | -1.69E-46 |
MS.gene050783 | MS.gene87271 | 0.802116 | 6.54E-49 | -1.69E-46 |
MS.gene050812 | MS.gene87271 | 0.828068 | 1.10E-54 | -1.69E-46 |
MS.gene050950 | MS.gene87271 | 0.830004 | 3.75E-55 | -1.69E-46 |
MS.gene05101 | MS.gene87271 | 0.807413 | 5.12E-50 | -1.69E-46 |
MS.gene05105 | MS.gene87271 | 0.856483 | 3.12E-62 | -1.69E-46 |
MS.gene051167 | MS.gene87271 | -0.81856 | 1.84E-52 | -1.69E-46 |
MS.gene051387 | MS.gene87271 | 0.881738 | 1.87E-70 | -1.69E-46 |
MS.gene051525 | MS.gene87271 | 0.84361 | 1.26E-58 | -1.69E-46 |
MS.gene051582 | MS.gene87271 | 0.879724 | 9.86E-70 | -1.69E-46 |
MS.gene051666 | MS.gene87271 | 0.841434 | 4.76E-58 | -1.69E-46 |
MS.gene051694 | MS.gene87271 | 0.814136 | 1.80E-51 | -1.69E-46 |
MS.gene051858 | MS.gene87271 | 0.805073 | 1.59E-49 | -1.69E-46 |
MS.gene051877 | MS.gene87271 | 0.824387 | 8.30E-54 | -1.69E-46 |
MS.gene052011 | MS.gene87271 | -0.808252 | 3.39E-50 | -1.69E-46 |
MS.gene052078 | MS.gene87271 | 0.809691 | 1.67E-50 | -1.69E-46 |
MS.gene052188 | MS.gene87271 | 0.811506 | 6.77E-51 | -1.69E-46 |
MS.gene052253 | MS.gene87271 | 0.813221 | 2.86E-51 | -1.69E-46 |
MS.gene052310 | MS.gene87271 | 0.849759 | 2.63E-60 | -1.69E-46 |
MS.gene052322 | MS.gene87271 | 0.840321 | 9.33E-58 | -1.69E-46 |
MS.gene052379 | MS.gene87271 | 0.816027 | 6.83E-52 | -1.69E-46 |
MS.gene052421 | MS.gene87271 | 0.883561 | 4.04E-71 | -1.69E-46 |
MS.gene052481 | MS.gene87271 | 0.835286 | 1.83E-56 | -1.69E-46 |
MS.gene052484 | MS.gene87271 | 0.812683 | 3.75E-51 | -1.69E-46 |
MS.gene052485 | MS.gene87271 | 0.842884 | 1.97E-58 | -1.69E-46 |
MS.gene052501 | MS.gene87271 | 0.836063 | 1.17E-56 | -1.69E-46 |
MS.gene052505 | MS.gene87271 | 0.84427 | 8.39E-59 | -1.69E-46 |
MS.gene052615 | MS.gene87271 | 0.851169 | 1.06E-60 | -1.69E-46 |
MS.gene052767 | MS.gene87271 | 0.844172 | 8.91E-59 | -1.69E-46 |
MS.gene052982 | MS.gene87271 | 0.843999 | 9.92E-59 | -1.69E-46 |
MS.gene053103 | MS.gene87271 | 0.864743 | 9.76E-65 | -1.69E-46 |
MS.gene053104 | MS.gene87271 | 0.812955 | 3.27E-51 | -1.69E-46 |
MS.gene053107 | MS.gene87271 | 0.803398 | 3.55E-49 | -1.69E-46 |
MS.gene053207 | MS.gene87271 | 0.83137 | 1.73E-55 | -1.69E-46 |
MS.gene053213 | MS.gene87271 | 0.82184 | 3.26E-53 | -1.69E-46 |
MS.gene053286 | MS.gene87271 | 0.806527 | 7.88E-50 | -1.69E-46 |
MS.gene053322 | MS.gene87271 | 0.845969 | 2.92E-59 | -1.69E-46 |
MS.gene053436 | MS.gene87271 | 0.800976 | 1.12E-48 | -1.69E-46 |
MS.gene053579 | MS.gene87271 | 0.849635 | 2.85E-60 | -1.69E-46 |
MS.gene053632 | MS.gene87271 | 0.829035 | 6.45E-55 | -1.69E-46 |
MS.gene053873 | MS.gene87271 | 0.803732 | 3.03E-49 | -1.69E-46 |
MS.gene053915 | MS.gene87271 | 0.827302 | 1.69E-54 | -1.69E-46 |
MS.gene054123 | MS.gene87271 | 0.80403 | 2.63E-49 | -1.69E-46 |
MS.gene054408 | MS.gene87271 | 0.825146 | 5.50E-54 | -1.69E-46 |
MS.gene054595 | MS.gene87271 | 0.80142 | 9.08E-49 | -1.69E-46 |
MS.gene054719 | MS.gene87271 | 0.818893 | 1.55E-52 | -1.69E-46 |
MS.gene054802 | MS.gene87271 | 0.829521 | 4.92E-55 | -1.69E-46 |
MS.gene054803 | MS.gene87271 | 0.824488 | 7.86E-54 | -1.69E-46 |
MS.gene054804 | MS.gene87271 | 0.82773 | 1.33E-54 | -1.69E-46 |
MS.gene054917 | MS.gene87271 | 0.815671 | 8.20E-52 | -1.69E-46 |
MS.gene054927 | MS.gene87271 | 0.822166 | 2.74E-53 | -1.69E-46 |
MS.gene05505 | MS.gene87271 | 0.844985 | 5.39E-59 | -1.69E-46 |
MS.gene055116 | MS.gene87271 | 0.817076 | 3.98E-52 | -1.69E-46 |
MS.gene055206 | MS.gene87271 | 0.840607 | 7.85E-58 | -1.69E-46 |
MS.gene055277 | MS.gene87271 | 0.818197 | 2.22E-52 | -1.69E-46 |
MS.gene055289 | MS.gene87271 | 0.821387 | 4.15E-53 | -1.69E-46 |
MS.gene055369 | MS.gene87271 | 0.804356 | 2.25E-49 | -1.69E-46 |
MS.gene055370 | MS.gene87271 | 0.837002 | 6.72E-57 | -1.69E-46 |
MS.gene055412 | MS.gene87271 | 0.843726 | 1.17E-58 | -1.69E-46 |
MS.gene055428 | MS.gene87271 | 0.823705 | 1.20E-53 | -1.69E-46 |
MS.gene055499 | MS.gene87271 | 0.800907 | 1.16E-48 | -1.69E-46 |
MS.gene05553 | MS.gene87271 | 0.81751 | 3.18E-52 | -1.69E-46 |
MS.gene055647 | MS.gene87271 | 0.800628 | 1.32E-48 | -1.69E-46 |
MS.gene05592 | MS.gene87271 | 0.81846 | 1.94E-52 | -1.69E-46 |
MS.gene055941 | MS.gene87271 | 0.803282 | 3.75E-49 | -1.69E-46 |
MS.gene05594 | MS.gene87271 | 0.816336 | 5.83E-52 | -1.69E-46 |
MS.gene056040 | MS.gene87271 | 0.802892 | 4.52E-49 | -1.69E-46 |
MS.gene056407 | MS.gene87271 | 0.875508 | 2.92E-68 | -1.69E-46 |
MS.gene056497 | MS.gene87271 | 0.817881 | 2.62E-52 | -1.69E-46 |
MS.gene056511 | MS.gene87271 | 0.820784 | 5.71E-53 | -1.69E-46 |
MS.gene056514 | MS.gene87271 | 0.802162 | 6.40E-49 | -1.69E-46 |
MS.gene056796 | MS.gene87271 | 0.804965 | 1.68E-49 | -1.69E-46 |
MS.gene057011 | MS.gene87271 | 0.862963 | 3.49E-64 | -1.69E-46 |
MS.gene05702 | MS.gene87271 | 0.823091 | 1.67E-53 | -1.69E-46 |
MS.gene057048 | MS.gene87271 | 0.815407 | 9.39E-52 | -1.69E-46 |
MS.gene057123 | MS.gene87271 | 0.834599 | 2.73E-56 | -1.69E-46 |
MS.gene057124 | MS.gene87271 | 0.832322 | 1.01E-55 | -1.69E-46 |
MS.gene057129 | MS.gene87271 | 0.832061 | 1.17E-55 | -1.69E-46 |
MS.gene057146 | MS.gene87271 | 0.87757 | 5.65E-69 | -1.69E-46 |
MS.gene057310 | MS.gene87271 | 0.807821 | 4.19E-50 | -1.69E-46 |
MS.gene057416 | MS.gene87271 | 0.869081 | 4.04E-66 | -1.69E-46 |
MS.gene057749 | MS.gene87271 | 0.83169 | 1.45E-55 | -1.69E-46 |
MS.gene057823 | MS.gene87271 | 0.854659 | 1.06E-61 | -1.69E-46 |
MS.gene057825 | MS.gene87271 | 0.800129 | 1.67E-48 | -1.69E-46 |
MS.gene058006 | MS.gene87271 | 0.831927 | 1.26E-55 | -1.69E-46 |
MS.gene058019 | MS.gene87271 | 0.847306 | 1.26E-59 | -1.69E-46 |
MS.gene058130 | MS.gene87271 | 0.812498 | 4.11E-51 | -1.69E-46 |
MS.gene058233 | MS.gene87271 | 0.838471 | 2.82E-57 | -1.69E-46 |
MS.gene058293 | MS.gene87271 | 0.851157 | 1.07E-60 | -1.69E-46 |
MS.gene058323 | MS.gene87271 | 0.813397 | 2.61E-51 | -1.69E-46 |
MS.gene058376 | MS.gene87271 | 0.80252 | 5.40E-49 | -1.69E-46 |
MS.gene05837 | MS.gene87271 | 0.800008 | 1.76E-48 | -1.69E-46 |
MS.gene058419 | MS.gene87271 | 0.811959 | 5.39E-51 | -1.69E-46 |
MS.gene058444 | MS.gene87271 | 0.800089 | 1.70E-48 | -1.69E-46 |
MS.gene058544 | MS.gene87271 | 0.807329 | 5.33E-50 | -1.69E-46 |
MS.gene058660 | MS.gene87271 | 0.847105 | 1.43E-59 | -1.69E-46 |
MS.gene058700 | MS.gene87271 | 0.824353 | 8.45E-54 | -1.69E-46 |
MS.gene05883 | MS.gene87271 | 0.801168 | 1.02E-48 | -1.69E-46 |
MS.gene05886 | MS.gene87271 | 0.823987 | 1.03E-53 | -1.69E-46 |
MS.gene05907 | MS.gene87271 | 0.804474 | 2.12E-49 | -1.69E-46 |
MS.gene059141 | MS.gene87271 | 0.851268 | 9.91E-61 | -1.69E-46 |
MS.gene05934 | MS.gene87271 | 0.82219 | 2.70E-53 | -1.69E-46 |
MS.gene059420 | MS.gene87271 | 0.839805 | 1.27E-57 | -1.69E-46 |
MS.gene059455 | MS.gene87271 | 0.800681 | 1.29E-48 | -1.69E-46 |
MS.gene059536 | MS.gene87271 | 0.824498 | 7.81E-54 | -1.69E-46 |
MS.gene059597 | MS.gene87271 | 0.808295 | 3.32E-50 | -1.69E-46 |
MS.gene059676 | MS.gene87271 | 0.841126 | 5.74E-58 | -1.69E-46 |
MS.gene059688 | MS.gene87271 | 0.85269 | 3.91E-61 | -1.69E-46 |
MS.gene059692 | MS.gene87271 | 0.835883 | 1.29E-56 | -1.69E-46 |
MS.gene059695 | MS.gene87271 | 0.842155 | 3.07E-58 | -1.69E-46 |
MS.gene059718 | MS.gene87271 | 0.812749 | 3.62E-51 | -1.69E-46 |
MS.gene059902 | MS.gene87271 | 0.805947 | 1.04E-49 | -1.69E-46 |
MS.gene059960 | MS.gene87271 | 0.843726 | 1.17E-58 | -1.69E-46 |
MS.gene060403 | MS.gene87271 | 0.854878 | 9.18E-62 | -1.69E-46 |
MS.gene060675 | MS.gene87271 | 0.813446 | 2.55E-51 | -1.69E-46 |
MS.gene060835 | MS.gene87271 | 0.806274 | 8.91E-50 | -1.69E-46 |
MS.gene060837 | MS.gene87271 | 0.804748 | 1.86E-49 | -1.69E-46 |
MS.gene06092 | MS.gene87271 | 0.857506 | 1.56E-62 | -1.69E-46 |
MS.gene061049 | MS.gene87271 | 0.818451 | 1.95E-52 | -1.69E-46 |
MS.gene061150 | MS.gene87271 | 0.819795 | 9.63E-53 | -1.69E-46 |
MS.gene061154 | MS.gene87271 | 0.805012 | 1.64E-49 | -1.69E-46 |
MS.gene061200 | MS.gene87271 | 0.838739 | 2.40E-57 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87271.t1 | MTR_2g082660 | 94.428 | 341 | 19 | 0 | 1 | 341 | 1 | 341 | 0.0 | 609 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87271.t1 | AT3G20680 | 57.051 | 312 | 122 | 6 | 37 | 341 | 32 | 338 | 1.18e-109 | 323 |
Find 76 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTCCTCAAATGCCCATTT+TGG | 0.158216 | 2.2:+14421315 | None:intergenic |
CAAATGATTAAGATCTTAAT+TGG | 0.241018 | 2.2:+14421555 | None:intergenic |
TGATGATGGATTGGAAATTT+TGG | 0.242376 | 2.2:+14421953 | None:intergenic |
AAATGGTATTGATGTAAATT+TGG | 0.260338 | 2.2:+14421908 | None:intergenic |
TCCTTTGAGATGGGTGGGTT+AGG | 0.269222 | 2.2:+14421780 | None:intergenic |
TCAGAAGAATTCAAGATTCT+TGG | 0.275876 | 2.2:+14421432 | None:intergenic |
CCTTTGAGATGGGTGGGTTA+GGG | 0.279888 | 2.2:+14421781 | None:intergenic |
TGGTTATGTTGAATCCAAAA+TGG | 0.282635 | 2.2:-14421329 | MS.gene87271:CDS |
TTTGAGGGATGCATGATATA+TGG | 0.301206 | 2.2:+14421859 | None:intergenic |
CTCAATAACCCTAAACTAAT+AGG | 0.316549 | 2.2:-14421705 | MS.gene87271:CDS |
CAATTAAGATCTTAATCATT+TGG | 0.318601 | 2.2:-14421554 | MS.gene87271:CDS |
TTCAACATAACCACTGGCTT+TGG | 0.323775 | 2.2:+14421339 | None:intergenic |
ACTGAAACAACCAAGATTTC+AGG | 0.329879 | 2.2:-14421670 | MS.gene87271:CDS |
GGTTGTTGAAAGGGATGTTT+TGG | 0.337358 | 2.2:+14421740 | None:intergenic |
AACTTCGCAGACTTCGTTAT+CGG | 0.363743 | 2.2:+14421033 | None:intergenic |
TAAATTGTCAGTGGTGAAAA+TGG | 0.381839 | 2.2:-14421379 | MS.gene87271:CDS |
TTCAAGGTTAGGCCAACTAT+TGG | 0.384714 | 2.2:-14421099 | MS.gene87271:CDS |
GGGATTTCAACCTGAAATCT+TGG | 0.394312 | 2.2:+14421660 | None:intergenic |
TGGGTTAGGGGAAGGGAGTG+AGG | 0.398727 | 2.2:+14421794 | None:intergenic |
GTTATTGAGAGGCTTCTCTA+AGG | 0.403019 | 2.2:+14421719 | None:intergenic |
TAGGGGAAGGGAGTGAGGAC+TGG | 0.410462 | 2.2:+14421799 | None:intergenic |
TATTGATGTAAATTTGGTAT+TGG | 0.415020 | 2.2:+14421914 | None:intergenic |
GCCGGATTCAGTTTGTAAAC+TGG | 0.416927 | 2.2:-14421622 | MS.gene87271:CDS |
CAGAAGAATTCAAGATTCTT+GGG | 0.420343 | 2.2:+14421433 | None:intergenic |
TGGTTTCTTCATTCAAGGTT+AGG | 0.422073 | 2.2:-14421110 | MS.gene87271:CDS |
AGATGGGTGGGTTAGGGGAA+GGG | 0.431709 | 2.2:+14421787 | None:intergenic |
GAAGGTGGTTTCTTCATTCA+AGG | 0.435414 | 2.2:-14421115 | MS.gene87271:CDS |
TTTATGGGATTGGAGGTAAG+AGG | 0.435981 | 2.2:-14421237 | MS.gene87271:CDS |
GGGTTGTGAGTGCAGAGAAA+TGG | 0.450689 | 2.2:-14421167 | MS.gene87271:CDS |
TTTGAGGAAGAGAGTAACTT+TGG | 0.461704 | 2.2:-14421303 | MS.gene87271:CDS |
GAATCCAAAATGGGCATTTG+AGG | 0.461750 | 2.2:-14421319 | MS.gene87271:CDS |
GGATGTGGATGTAGCTTTGA+GGG | 0.462607 | 2.2:+14421824 | None:intergenic |
GAGATGGGTGGGTTAGGGGA+AGG | 0.465818 | 2.2:+14421786 | None:intergenic |
CTTTGAGATGGGTGGGTTAG+GGG | 0.469018 | 2.2:+14421782 | None:intergenic |
GCATCTTCCTTTGAGATGGG+TGG | 0.470249 | 2.2:+14421774 | None:intergenic |
CAATGTCAATGTGTTCAACT+TGG | 0.470733 | 2.2:+14421475 | None:intergenic |
GCCAGTTTACAAACTGAATC+CGG | 0.472712 | 2.2:+14421621 | None:intergenic |
GGAAGGGAGTGAGGACTGGA+TGG | 0.475177 | 2.2:+14421803 | None:intergenic |
GGTTATGTTGAATCCAAAAT+GGG | 0.478277 | 2.2:-14421328 | MS.gene87271:CDS |
CATCTTCCTTTGAGATGGGT+GGG | 0.484840 | 2.2:+14421775 | None:intergenic |
GACATACCAATCAAAAGAAA+AGG | 0.487141 | 2.2:-14421582 | MS.gene87271:CDS |
TGGATGTGGATGTAGCTTTG+AGG | 0.491782 | 2.2:+14421823 | None:intergenic |
CATTGATAATGAGTATGAAA+TGG | 0.494629 | 2.2:+14421891 | None:intergenic |
CTTCTCTAAGGTTGTTGAAA+GGG | 0.495706 | 2.2:+14421731 | None:intergenic |
GGGATATTGAGCAAAAGAAA+AGG | 0.497454 | 2.2:-14421216 | MS.gene87271:CDS |
ATCTCAACTTCGCCAATAGT+TGG | 0.501904 | 2.2:+14421087 | None:intergenic |
TTTGGATTCAACATAACCAC+TGG | 0.509160 | 2.2:+14421333 | None:intergenic |
TGGAATGTTCTTGTTGAAGA+AGG | 0.509369 | 2.2:-14421147 | MS.gene87271:CDS |
TATGGCATCTTCCTTTGAGA+TGG | 0.518876 | 2.2:+14421770 | None:intergenic |
CCCGGTCATCGATGACTCGC+CGG | 0.521804 | 2.2:-14421640 | MS.gene87271:CDS |
GAGTGAGGACTGGATGGATG+TGG | 0.521865 | 2.2:+14421809 | None:intergenic |
TGCGAAGTTCATCAAGGGAT+TGG | 0.522471 | 2.2:-14421019 | MS.gene87271:CDS |
GGATTGGTGTCGAATGTGAC+AGG | 0.523214 | 2.2:-14421003 | MS.gene87271:CDS |
TTATGGGATTGGAGGTAAGA+GGG | 0.524110 | 2.2:-14421236 | MS.gene87271:CDS |
AAGATTTCAGGTTGAAATCC+CGG | 0.526976 | 2.2:-14421658 | MS.gene87271:CDS |
TCCGGCGAGTCATCGATGAC+CGG | 0.527988 | 2.2:+14421639 | None:intergenic |
AATCTTGAATTCTTCTGATG+TGG | 0.534326 | 2.2:-14421427 | MS.gene87271:CDS |
ACTGACAATTTAGAACTCTC+TGG | 0.544169 | 2.2:+14421390 | None:intergenic |
CCGGCGAGTCATCGATGACC+GGG | 0.544538 | 2.2:+14421640 | None:intergenic |
ATGGCATCTTCCTTTGAGAT+GGG | 0.551979 | 2.2:+14421771 | None:intergenic |
AGTAACTTTGGTGATCTAAG+TGG | 0.553292 | 2.2:-14421291 | MS.gene87271:CDS |
GCTTCTCTAAGGTTGTTGAA+AGG | 0.554793 | 2.2:+14421730 | None:intergenic |
TGTGCATGTATGCATGATGA+TGG | 0.556364 | 2.2:+14421939 | None:intergenic |
GTAGCTTTGAGGGGAACAGT+AGG | 0.560271 | 2.2:+14421834 | None:intergenic |
CCCTAACCCACCCATCTCAA+AGG | 0.566184 | 2.2:-14421781 | MS.gene87271:CDS |
TAGCTTTGAGGGGAACAGTA+GGG | 0.574005 | 2.2:+14421835 | None:intergenic |
GAAGTCTGCGAAGTTCATCA+AGG | 0.586654 | 2.2:-14421025 | MS.gene87271:CDS |
TGTTCTTGTTGAAGAAGGTG+AGG | 0.596063 | 2.2:-14421142 | MS.gene87271:CDS |
ATTAGTTTAGGGTTATTGAG+AGG | 0.602575 | 2.2:+14421708 | None:intergenic |
AGAAGGTGAGGAAATGAAGG+TGG | 0.605802 | 2.2:-14421130 | MS.gene87271:CDS |
TGAAGAAGGTGAGGAAATGA+AGG | 0.617329 | 2.2:-14421133 | MS.gene87271:CDS |
ATGTATGCATGATGATGGAT+TGG | 0.618691 | 2.2:+14421944 | None:intergenic |
AAGTCTGCGAAGTTCATCAA+GGG | 0.623822 | 2.2:-14421024 | MS.gene87271:CDS |
AATGTCAATGTGTTCAACTT+GGG | 0.659171 | 2.2:+14421476 | None:intergenic |
AGAGAGTTCTAAATTGTCAG+TGG | 0.670269 | 2.2:-14421388 | MS.gene87271:CDS |
GATGTGGATGTAGCTTTGAG+GGG | 0.707666 | 2.2:+14421825 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CAAATGATTAAGATCTTAAT+TGG | + | chr2.2:14421437-14421456 | None:intergenic | 20.0% |
!! | CAATTAAGATCTTAATCATT+TGG | - | chr2.2:14421435-14421454 | MS.gene87271:CDS | 20.0% |
!! | TATTGATGTAAATTTGGTAT+TGG | + | chr2.2:14421078-14421097 | None:intergenic | 20.0% |
!!! | AAATGGTATTGATGTAAATT+TGG | + | chr2.2:14421084-14421103 | None:intergenic | 20.0% |
!!! | GAAGTTGTTTATTCTTTTAT+GGG | - | chr2.2:14421737-14421756 | MS.gene87271:CDS | 20.0% |
!!! | GATTGTTTTGTATAATTTGA+TGG | - | chr2.2:14421922-14421941 | MS.gene87271:CDS | 20.0% |
!!! | TGAAGTTGTTTATTCTTTTA+TGG | - | chr2.2:14421736-14421755 | MS.gene87271:CDS | 20.0% |
!! | TGTTTATTCTTTTATGGGAT+TGG | - | chr2.2:14421742-14421761 | MS.gene87271:CDS | 25.0% |
!!! | CATTGATAATGAGTATGAAA+TGG | + | chr2.2:14421101-14421120 | None:intergenic | 25.0% |
!!! | TGATTTTGCCTATTAGTTTA+GGG | + | chr2.2:14421295-14421314 | None:intergenic | 25.0% |
!!! | TTGATTTTGCCTATTAGTTT+AGG | + | chr2.2:14421296-14421315 | None:intergenic | 25.0% |
AATCTTGAATTCTTCTGATG+TGG | - | chr2.2:14421562-14421581 | MS.gene87271:CDS | 30.0% | |
AATGTCAATGTGTTCAACTT+GGG | + | chr2.2:14421516-14421535 | None:intergenic | 30.0% | |
CAGAAGAATTCAAGATTCTT+GGG | + | chr2.2:14421559-14421578 | None:intergenic | 30.0% | |
CTCAATAACCCTAAACTAAT+AGG | - | chr2.2:14421284-14421303 | MS.gene87271:CDS | 30.0% | |
GACATACCAATCAAAAGAAA+AGG | - | chr2.2:14421407-14421426 | MS.gene87271:CDS | 30.0% | |
GGTTATGTTGAATCCAAAAT+GGG | - | chr2.2:14421661-14421680 | MS.gene87271:CDS | 30.0% | |
TAAATTGTCAGTGGTGAAAA+TGG | - | chr2.2:14421610-14421629 | MS.gene87271:CDS | 30.0% | |
TCAGAAGAATTCAAGATTCT+TGG | + | chr2.2:14421560-14421579 | None:intergenic | 30.0% | |
TGGTTATGTTGAATCCAAAA+TGG | - | chr2.2:14421660-14421679 | MS.gene87271:CDS | 30.0% | |
! | ATTAGTTTAGGGTTATTGAG+AGG | + | chr2.2:14421284-14421303 | None:intergenic | 30.0% |
! | TTATTCTTTTATGGGATTGG+AGG | - | chr2.2:14421745-14421764 | MS.gene87271:CDS | 30.0% |
!! | AAACTGGCTCTTGATATTTT+TGG | - | chr2.2:14421383-14421402 | MS.gene87271:CDS | 30.0% |
!! | AACTGGCTCTTGATATTTTT+GGG | - | chr2.2:14421384-14421403 | MS.gene87271:CDS | 30.0% |
!!! | ATTGCAGCTTTTTTTAAGCT+AGG | + | chr2.2:14421467-14421486 | None:intergenic | 30.0% |
!!! | ATTTTTAAGTGTGTGAGAGA+TGG | - | chr2.2:14421800-14421819 | MS.gene87271:CDS | 30.0% |
!!! | GCTTTTTTTAAGCTAGGATT+AGG | + | chr2.2:14421461-14421480 | None:intergenic | 30.0% |
!!! | TGATGATGGATTGGAAATTT+TGG | + | chr2.2:14421039-14421058 | None:intergenic | 30.0% |
!!! | TTTTTAAGTGTGTGAGAGAT+GGG | - | chr2.2:14421801-14421820 | MS.gene87271:CDS | 30.0% |
ACTGAAACAACCAAGATTTC+AGG | - | chr2.2:14421319-14421338 | MS.gene87271:CDS | 35.0% | |
CAATGTCAATGTGTTCAACT+TGG | + | chr2.2:14421517-14421536 | None:intergenic | 35.0% | |
GGGATATTGAGCAAAAGAAA+AGG | - | chr2.2:14421773-14421792 | MS.gene87271:CDS | 35.0% | |
TGGAATGTTCTTGTTGAAGA+AGG | - | chr2.2:14421842-14421861 | MS.gene87271:CDS | 35.0% | |
TGGTTTCTTCATTCAAGGTT+AGG | - | chr2.2:14421879-14421898 | MS.gene87271:CDS | 35.0% | |
TTTGAGGAAGAGAGTAACTT+TGG | - | chr2.2:14421686-14421705 | MS.gene87271:CDS | 35.0% | |
TTTGAGGGATGCATGATATA+TGG | + | chr2.2:14421133-14421152 | None:intergenic | 35.0% | |
TTTGGATTCAACATAACCAC+TGG | + | chr2.2:14421659-14421678 | None:intergenic | 35.0% | |
! | ACTGACAATTTAGAACTCTC+TGG | + | chr2.2:14421602-14421621 | None:intergenic | 35.0% |
! | AGTAACTTTGGTGATCTAAG+TGG | - | chr2.2:14421698-14421717 | MS.gene87271:CDS | 35.0% |
! | GGAGAACCTTTTCTTTTGAT+TGG | + | chr2.2:14421416-14421435 | None:intergenic | 35.0% |
!! | AAGATTTCAGGTTGAAATCC+CGG | - | chr2.2:14421331-14421350 | MS.gene87271:CDS | 35.0% |
!! | ACTGGCTCTTGATATTTTTG+GGG | - | chr2.2:14421385-14421404 | MS.gene87271:CDS | 35.0% |
!! | AGAGAGTTCTAAATTGTCAG+TGG | - | chr2.2:14421601-14421620 | MS.gene87271:CDS | 35.0% |
!! | ATGTATGCATGATGATGGAT+TGG | + | chr2.2:14421048-14421067 | None:intergenic | 35.0% |
!! | CTTCTCTAAGGTTGTTGAAA+GGG | + | chr2.2:14421261-14421280 | None:intergenic | 35.0% |
!! | TTTTAAGTGTGTGAGAGATG+GGG | - | chr2.2:14421802-14421821 | MS.gene87271:CDS | 35.0% |
AACTTCGCAGACTTCGTTAT+CGG | + | chr2.2:14421959-14421978 | None:intergenic | 40.0% | |
AAGTCTGCGAAGTTCATCAA+GGG | - | chr2.2:14421965-14421984 | MS.gene87271:CDS | 40.0% | |
ATCTCAACTTCGCCAATAGT+TGG | + | chr2.2:14421905-14421924 | None:intergenic | 40.0% | |
GAAGGTGGTTTCTTCATTCA+AGG | - | chr2.2:14421874-14421893 | MS.gene87271:CDS | 40.0% | |
GAATCCAAAATGGGCATTTG+AGG | - | chr2.2:14421670-14421689 | MS.gene87271:CDS | 40.0% | |
GCCAGTTTACAAACTGAATC+CGG | + | chr2.2:14421371-14421390 | None:intergenic | 40.0% | |
GGGATTTCAACCTGAAATCT+TGG | + | chr2.2:14421332-14421351 | None:intergenic | 40.0% | |
GTTATTGAGAGGCTTCTCTA+AGG | + | chr2.2:14421273-14421292 | None:intergenic | 40.0% | |
TGAAGAAGGTGAGGAAATGA+AGG | - | chr2.2:14421856-14421875 | MS.gene87271:CDS | 40.0% | |
TGTGCATGTATGCATGATGA+TGG | + | chr2.2:14421053-14421072 | None:intergenic | 40.0% | |
TGTTCTTGTTGAAGAAGGTG+AGG | - | chr2.2:14421847-14421866 | MS.gene87271:CDS | 40.0% | |
TTATGGGATTGGAGGTAAGA+GGG | - | chr2.2:14421753-14421772 | MS.gene87271:CDS | 40.0% | |
TTCAAGGTTAGGCCAACTAT+TGG | - | chr2.2:14421890-14421909 | MS.gene87271:CDS | 40.0% | |
TTTATGGGATTGGAGGTAAG+AGG | - | chr2.2:14421752-14421771 | MS.gene87271:CDS | 40.0% | |
! | GGTTGTTGAAAGGGATGTTT+TGG | + | chr2.2:14421252-14421271 | None:intergenic | 40.0% |
! | TATGGCATCTTCCTTTGAGA+TGG | + | chr2.2:14421222-14421241 | None:intergenic | 40.0% |
! | TCTTCCTCAAATGCCCATTT+TGG | + | chr2.2:14421677-14421696 | None:intergenic | 40.0% |
! | TGCTTTTAATCCAAAGCCAG+TGG | - | chr2.2:14421640-14421659 | MS.gene87271:CDS | 40.0% |
! | TTCTGATGTGGCAGTGTTTT+TGG | - | chr2.2:14421574-14421593 | MS.gene87271:CDS | 40.0% |
!! | ATGGCATCTTCCTTTGAGAT+GGG | + | chr2.2:14421221-14421240 | None:intergenic | 40.0% |
!! | GCTTCTCTAAGGTTGTTGAA+AGG | + | chr2.2:14421262-14421281 | None:intergenic | 40.0% |
!! | TTCAACATAACCACTGGCTT+TGG | + | chr2.2:14421653-14421672 | None:intergenic | 40.0% |
!!! | GGATGTTTTGGCTTGAAGTA+TGG | + | chr2.2:14421240-14421259 | None:intergenic | 40.0% |
AGAAGGTGAGGAAATGAAGG+TGG | - | chr2.2:14421859-14421878 | MS.gene87271:CDS | 45.0% | |
GAAGTCTGCGAAGTTCATCA+AGG | - | chr2.2:14421964-14421983 | MS.gene87271:CDS | 45.0% | |
GCCGGATTCAGTTTGTAAAC+TGG | - | chr2.2:14421367-14421386 | MS.gene87271:CDS | 45.0% | |
TGCGAAGTTCATCAAGGGAT+TGG | - | chr2.2:14421970-14421989 | MS.gene87271:CDS | 45.0% | |
! | TGGATGTGGATGTAGCTTTG+AGG | + | chr2.2:14421169-14421188 | None:intergenic | 45.0% |
!! | CATCTTCCTTTGAGATGGGT+GGG | + | chr2.2:14421217-14421236 | None:intergenic | 45.0% |
!! | GATGTGGATGTAGCTTTGAG+GGG | + | chr2.2:14421167-14421186 | None:intergenic | 45.0% |
!! | GGATGTGGATGTAGCTTTGA+GGG | + | chr2.2:14421168-14421187 | None:intergenic | 45.0% |
!! | TAGCTTTGAGGGGAACAGTA+GGG | + | chr2.2:14421157-14421176 | None:intergenic | 45.0% |
GGGTTGTGAGTGCAGAGAAA+TGG | - | chr2.2:14421822-14421841 | MS.gene87271:CDS | 50.0% | |
! | AGGGGAACAGTAGGGTTTTG+AGG | + | chr2.2:14421149-14421168 | None:intergenic | 50.0% |
!! | CCTTTGAGATGGGTGGGTTA+GGG | + | chr2.2:14421211-14421230 | None:intergenic | 50.0% |
!! | CTTTGAGATGGGTGGGTTAG+GGG | + | chr2.2:14421210-14421229 | None:intergenic | 50.0% |
!! | GCATCTTCCTTTGAGATGGG+TGG | + | chr2.2:14421218-14421237 | None:intergenic | 50.0% |
!! | GGATTGGTGTCGAATGTGAC+AGG | - | chr2.2:14421986-14422005 | MS.gene87271:CDS | 50.0% |
!! | GGGGAACAGTAGGGTTTTGA+GGG | + | chr2.2:14421148-14421167 | None:intergenic | 50.0% |
!! | GTAGCTTTGAGGGGAACAGT+AGG | + | chr2.2:14421158-14421177 | None:intergenic | 50.0% |
!! | TCCTTTGAGATGGGTGGGTT+AGG | + | chr2.2:14421212-14421231 | None:intergenic | 50.0% |
CCCTAACCCACCCATCTCAA+AGG | - | chr2.2:14421208-14421227 | MS.gene87271:CDS | 55.0% | |
GAGTGAGGACTGGATGGATG+TGG | + | chr2.2:14421183-14421202 | None:intergenic | 55.0% | |
!! | AGATGGGTGGGTTAGGGGAA+GGG | + | chr2.2:14421205-14421224 | None:intergenic | 55.0% |
GGAAGGGAGTGAGGACTGGA+TGG | + | chr2.2:14421189-14421208 | None:intergenic | 60.0% | |
TAGGGGAAGGGAGTGAGGAC+TGG | + | chr2.2:14421193-14421212 | None:intergenic | 60.0% | |
TCCGGCGAGTCATCGATGAC+CGG | + | chr2.2:14421353-14421372 | None:intergenic | 60.0% | |
! | TGGGTTAGGGGAAGGGAGTG+AGG | + | chr2.2:14421198-14421217 | None:intergenic | 60.0% |
!! | GAGATGGGTGGGTTAGGGGA+AGG | + | chr2.2:14421206-14421225 | None:intergenic | 60.0% |
CCCGGTCATCGATGACTCGC+CGG | - | chr2.2:14421349-14421368 | MS.gene87271:CDS | 65.0% | |
CCGGCGAGTCATCGATGACC+GGG | + | chr2.2:14421352-14421371 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 14420993 | 14422018 | 14420993 | ID=MS.gene87271 |
chr2.2 | mRNA | 14420993 | 14422018 | 14420993 | ID=MS.gene87271.t1;Parent=MS.gene87271 |
chr2.2 | exon | 14420993 | 14422018 | 14420993 | ID=MS.gene87271.t1.exon1;Parent=MS.gene87271.t1 |
chr2.2 | CDS | 14420993 | 14422018 | 14420993 | ID=cds.MS.gene87271.t1;Parent=MS.gene87271.t1 |
Gene Sequence |
Protein sequence |