Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89495.t1 | ADK11431.1 | 98.4 | 379 | 6 | 0 | 1 | 379 | 1 | 379 | 2.90E-214 | 754.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89495.t1 | Q9C9S4 | 60.3 | 383 | 125 | 6 | 1 | 371 | 1 | 368 | 2.1e-120 | 433.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89495.t1 | D9ILX3 | 98.4 | 379 | 6 | 0 | 1 | 379 | 1 | 379 | 2.1e-214 | 754.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene89495 | -0.820393 | 7.02E-53 | -1.69E-46 |
| MS.gene049217 | MS.gene89495 | -0.809786 | 1.59E-50 | -1.69E-46 |
| MS.gene049222 | MS.gene89495 | -0.82279 | 1.96E-53 | -1.69E-46 |
| MS.gene049232 | MS.gene89495 | -0.800772 | 1.23E-48 | -1.69E-46 |
| MS.gene049259 | MS.gene89495 | 0.812479 | 4.15E-51 | -1.69E-46 |
| MS.gene049285 | MS.gene89495 | -0.805666 | 1.20E-49 | -1.69E-46 |
| MS.gene049320 | MS.gene89495 | -0.832295 | 1.03E-55 | -1.69E-46 |
| MS.gene049483 | MS.gene89495 | 0.803318 | 3.69E-49 | -1.69E-46 |
| MS.gene049611 | MS.gene89495 | 0.823483 | 1.35E-53 | -1.69E-46 |
| MS.gene049633 | MS.gene89495 | -0.800996 | 1.11E-48 | -1.69E-46 |
| MS.gene049634 | MS.gene89495 | 0.835186 | 1.94E-56 | -1.69E-46 |
| MS.gene050095 | MS.gene89495 | 0.803484 | 3.41E-49 | -1.69E-46 |
| MS.gene05010 | MS.gene89495 | -0.818261 | 2.15E-52 | -1.69E-46 |
| MS.gene050163 | MS.gene89495 | -0.807253 | 5.53E-50 | -1.69E-46 |
| MS.gene050165 | MS.gene89495 | -0.814273 | 1.68E-51 | -1.69E-46 |
| MS.gene050170 | MS.gene89495 | -0.804099 | 2.54E-49 | -1.69E-46 |
| MS.gene050323 | MS.gene89495 | -0.81744 | 3.29E-52 | -1.69E-46 |
| MS.gene050381 | MS.gene89495 | 0.861884 | 7.50E-64 | -1.69E-46 |
| MS.gene050496 | MS.gene89495 | -0.801167 | 1.02E-48 | -1.69E-46 |
| MS.gene050504 | MS.gene89495 | -0.855499 | 6.06E-62 | -1.69E-46 |
| MS.gene050577 | MS.gene89495 | -0.801487 | 8.80E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene89495 | -0.85141 | 9.04E-61 | -1.69E-46 |
| MS.gene050675 | MS.gene89495 | -0.811884 | 5.60E-51 | -1.69E-46 |
| MS.gene050699 | MS.gene89495 | -0.807674 | 4.50E-50 | -1.69E-46 |
| MS.gene05080 | MS.gene89495 | -0.802095 | 6.60E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene89495 | -0.871533 | 6.36E-67 | -1.69E-46 |
| MS.gene050871 | MS.gene89495 | -0.869754 | 2.44E-66 | -1.69E-46 |
| MS.gene050883 | MS.gene89495 | 0.840984 | 6.26E-58 | -1.69E-46 |
| MS.gene050986 | MS.gene89495 | -0.832538 | 8.93E-56 | -1.69E-46 |
| MS.gene051044 | MS.gene89495 | 0.844429 | 7.60E-59 | -1.69E-46 |
| MS.gene05104 | MS.gene89495 | 0.818573 | 1.83E-52 | -1.69E-46 |
| MS.gene051127 | MS.gene89495 | 0.846688 | 1.86E-59 | -1.69E-46 |
| MS.gene051138 | MS.gene89495 | 0.864193 | 1.45E-64 | -1.69E-46 |
| MS.gene051364 | MS.gene89495 | 0.804841 | 1.78E-49 | -1.69E-46 |
| MS.gene05141 | MS.gene89495 | 0.842037 | 3.30E-58 | -1.69E-46 |
| MS.gene051651 | MS.gene89495 | 0.810988 | 8.76E-51 | -1.69E-46 |
| MS.gene051863 | MS.gene89495 | 0.809245 | 2.08E-50 | -1.69E-46 |
| MS.gene051946 | MS.gene89495 | 0.835096 | 2.05E-56 | -1.69E-46 |
| MS.gene052164 | MS.gene89495 | -0.819859 | 9.31E-53 | -1.69E-46 |
| MS.gene052211 | MS.gene89495 | 0.803945 | 2.74E-49 | -1.69E-46 |
| MS.gene052482 | MS.gene89495 | -0.810934 | 9.01E-51 | -1.69E-46 |
| MS.gene052486 | MS.gene89495 | -0.815859 | 7.45E-52 | -1.69E-46 |
| MS.gene052802 | MS.gene89495 | 0.821567 | 3.77E-53 | -1.69E-46 |
| MS.gene052966 | MS.gene89495 | -0.836622 | 8.40E-57 | -1.69E-46 |
| MS.gene053203 | MS.gene89495 | -0.832237 | 1.06E-55 | -1.69E-46 |
| MS.gene053420 | MS.gene89495 | 0.851267 | 9.92E-61 | -1.69E-46 |
| MS.gene053488 | MS.gene89495 | 0.847028 | 1.50E-59 | -1.69E-46 |
| MS.gene053549 | MS.gene89495 | 0.812378 | 4.37E-51 | -1.69E-46 |
| MS.gene053561 | MS.gene89495 | 0.847232 | 1.32E-59 | -1.69E-46 |
| MS.gene053887 | MS.gene89495 | 0.80942 | 1.91E-50 | -1.69E-46 |
| MS.gene054054 | MS.gene89495 | 0.843261 | 1.56E-58 | -1.69E-46 |
| MS.gene054056 | MS.gene89495 | 0.813833 | 2.10E-51 | -1.69E-46 |
| MS.gene054595 | MS.gene89495 | -0.813239 | 2.83E-51 | -1.69E-46 |
| MS.gene054616 | MS.gene89495 | 0.810364 | 1.20E-50 | -1.69E-46 |
| MS.gene054706 | MS.gene89495 | 0.814047 | 1.88E-51 | -1.69E-46 |
| MS.gene054707 | MS.gene89495 | 0.804345 | 2.26E-49 | -1.69E-46 |
| MS.gene054708 | MS.gene89495 | 0.817017 | 4.10E-52 | -1.69E-46 |
| MS.gene05470 | MS.gene89495 | -0.826077 | 3.31E-54 | -1.69E-46 |
| MS.gene054954 | MS.gene89495 | -0.815034 | 1.14E-51 | -1.69E-46 |
| MS.gene055124 | MS.gene89495 | 0.833751 | 4.45E-56 | -1.69E-46 |
| MS.gene055139 | MS.gene89495 | 0.807615 | 4.64E-50 | -1.69E-46 |
| MS.gene055154 | MS.gene89495 | 0.839757 | 1.31E-57 | -1.69E-46 |
| MS.gene055202 | MS.gene89495 | 0.843261 | 1.56E-58 | -1.69E-46 |
| MS.gene055362 | MS.gene89495 | -0.836137 | 1.12E-56 | -1.69E-46 |
| MS.gene055502 | MS.gene89495 | -0.843757 | 1.15E-58 | -1.69E-46 |
| MS.gene055577 | MS.gene89495 | -0.836187 | 1.08E-56 | -1.69E-46 |
| MS.gene055748 | MS.gene89495 | -0.81811 | 2.33E-52 | -1.69E-46 |
| MS.gene055750 | MS.gene89495 | -0.820571 | 6.39E-53 | -1.69E-46 |
| MS.gene055751 | MS.gene89495 | -0.827684 | 1.37E-54 | -1.69E-46 |
| MS.gene055776 | MS.gene89495 | -0.805919 | 1.06E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene89495 | -0.841101 | 5.83E-58 | -1.69E-46 |
| MS.gene055942 | MS.gene89495 | 0.809787 | 1.59E-50 | -1.69E-46 |
| MS.gene056224 | MS.gene89495 | 0.83008 | 3.59E-55 | -1.69E-46 |
| MS.gene056310 | MS.gene89495 | 0.816356 | 5.77E-52 | -1.69E-46 |
| MS.gene056311 | MS.gene89495 | 0.835102 | 2.04E-56 | -1.69E-46 |
| MS.gene056313 | MS.gene89495 | 0.8254 | 4.79E-54 | -1.69E-46 |
| MS.gene056504 | MS.gene89495 | -0.858682 | 6.97E-63 | -1.69E-46 |
| MS.gene056510 | MS.gene89495 | -0.825565 | 4.37E-54 | -1.69E-46 |
| MS.gene056550 | MS.gene89495 | 0.81516 | 1.07E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene89495 | -0.812403 | 4.32E-51 | -1.69E-46 |
| MS.gene056856 | MS.gene89495 | 0.804792 | 1.82E-49 | -1.69E-46 |
| MS.gene057014 | MS.gene89495 | 0.857391 | 1.69E-62 | -1.69E-46 |
| MS.gene057768 | MS.gene89495 | 0.80845 | 3.08E-50 | -1.69E-46 |
| MS.gene058068 | MS.gene89495 | 0.829952 | 3.86E-55 | -1.69E-46 |
| MS.gene058099 | MS.gene89495 | 0.832679 | 8.24E-56 | -1.69E-46 |
| MS.gene058108 | MS.gene89495 | 0.8249 | 6.28E-54 | -1.69E-46 |
| MS.gene058109 | MS.gene89495 | 0.839848 | 1.24E-57 | -1.69E-46 |
| MS.gene058111 | MS.gene89495 | 0.830389 | 3.02E-55 | -1.69E-46 |
| MS.gene058117 | MS.gene89495 | 0.823782 | 1.15E-53 | -1.69E-46 |
| MS.gene058171 | MS.gene89495 | 0.877165 | 7.82E-69 | -1.69E-46 |
| MS.gene058173 | MS.gene89495 | 0.865599 | 5.25E-65 | -1.69E-46 |
| MS.gene058175 | MS.gene89495 | 0.882228 | 1.24E-70 | -1.69E-46 |
| MS.gene058334 | MS.gene89495 | 0.810728 | 9.98E-51 | -1.69E-46 |
| MS.gene05837 | MS.gene89495 | -0.817875 | 2.63E-52 | -1.69E-46 |
| MS.gene058419 | MS.gene89495 | -0.802305 | 5.97E-49 | -1.69E-46 |
| MS.gene058493 | MS.gene89495 | 0.816208 | 6.23E-52 | -1.69E-46 |
| MS.gene058494 | MS.gene89495 | 0.808294 | 3.32E-50 | -1.69E-46 |
| MS.gene058544 | MS.gene89495 | -0.808515 | 2.98E-50 | -1.69E-46 |
| MS.gene058603 | MS.gene89495 | 0.8401 | 1.07E-57 | -1.69E-46 |
| MS.gene058773 | MS.gene89495 | -0.824706 | 6.98E-54 | -1.69E-46 |
| MS.gene058840 | MS.gene89495 | 0.802111 | 6.55E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene89495 | -0.851881 | 6.65E-61 | -1.69E-46 |
| MS.gene059023 | MS.gene89495 | -0.810477 | 1.13E-50 | -1.69E-46 |
| MS.gene059045 | MS.gene89495 | 0.842764 | 2.12E-58 | -1.69E-46 |
| MS.gene059223 | MS.gene89495 | 0.825048 | 5.80E-54 | -1.69E-46 |
| MS.gene059677 | MS.gene89495 | -0.820228 | 7.66E-53 | -1.69E-46 |
| MS.gene059690 | MS.gene89495 | 0.849343 | 3.44E-60 | -1.69E-46 |
| MS.gene059691 | MS.gene89495 | 0.840172 | 1.02E-57 | -1.69E-46 |
| MS.gene059694 | MS.gene89495 | 0.855125 | 7.78E-62 | -1.69E-46 |
| MS.gene059697 | MS.gene89495 | 0.85205 | 5.95E-61 | -1.69E-46 |
| MS.gene059718 | MS.gene89495 | -0.811563 | 6.58E-51 | -1.69E-46 |
| MS.gene059865 | MS.gene89495 | -0.852271 | 5.15E-61 | -1.69E-46 |
| MS.gene059916 | MS.gene89495 | 0.829713 | 4.41E-55 | -1.69E-46 |
| MS.gene060595 | MS.gene89495 | 0.81308 | 3.07E-51 | -1.69E-46 |
| MS.gene060762 | MS.gene89495 | -0.84275 | 2.14E-58 | -1.69E-46 |
| MS.gene060778 | MS.gene89495 | -0.808357 | 3.22E-50 | -1.69E-46 |
| MS.gene06077 | MS.gene89495 | -0.843455 | 1.39E-58 | -1.69E-46 |
| MS.gene060982 | MS.gene89495 | -0.8232 | 1.57E-53 | -1.69E-46 |
| MS.gene061044 | MS.gene89495 | 0.803123 | 4.05E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89495.t1 | MTR_5g063080 | 95.251 | 379 | 18 | 0 | 1 | 379 | 1 | 379 | 0.0 | 756 |
| MS.gene89495.t1 | MTR_3g074180 | 72.254 | 346 | 86 | 4 | 30 | 373 | 24 | 361 | 0.0 | 515 |
| MS.gene89495.t1 | MTR_8g090330 | 65.373 | 335 | 110 | 3 | 44 | 376 | 32 | 362 | 1.70e-157 | 447 |
| MS.gene89495.t1 | MTR_4g101600 | 52.410 | 332 | 136 | 2 | 68 | 377 | 57 | 388 | 1.57e-124 | 364 |
| MS.gene89495.t1 | MTR_4g036090 | 54.878 | 328 | 126 | 2 | 72 | 377 | 59 | 386 | 7.62e-122 | 357 |
| MS.gene89495.t1 | MTR_3g008500 | 53.191 | 329 | 128 | 3 | 69 | 374 | 62 | 387 | 4.73e-119 | 350 |
| MS.gene89495.t1 | MTR_8g090330 | 65.019 | 263 | 86 | 3 | 44 | 304 | 32 | 290 | 1.50e-118 | 346 |
| MS.gene89495.t1 | MTR_4g036090 | 55.484 | 310 | 116 | 2 | 72 | 359 | 59 | 368 | 1.23e-113 | 339 |
| MS.gene89495.t1 | MTR_3g091010 | 51.568 | 287 | 128 | 1 | 97 | 372 | 69 | 355 | 9.48e-103 | 308 |
| MS.gene89495.t1 | MTR_8g027765 | 48.780 | 287 | 134 | 3 | 97 | 371 | 25 | 310 | 3.98e-97 | 292 |
| MS.gene89495.t1 | MTR_4g036685 | 42.231 | 251 | 103 | 7 | 89 | 314 | 22 | 255 | 7.53e-47 | 161 |
| MS.gene89495.t1 | MTR_4g128870 | 68.182 | 110 | 14 | 3 | 112 | 221 | 1 | 89 | 2.63e-40 | 138 |
| MS.gene89495.t1 | MTR_8g090155 | 89.796 | 49 | 5 | 0 | 52 | 100 | 13 | 61 | 9.28e-25 | 99.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89495.t1 | AT1G78090 | 60.000 | 385 | 127 | 6 | 1 | 373 | 1 | 370 | 4.61e-156 | 444 |
| MS.gene89495.t1 | AT5G10100 | 62.575 | 334 | 119 | 2 | 46 | 375 | 37 | 368 | 2.62e-151 | 432 |
| MS.gene89495.t1 | AT5G10100 | 62.575 | 334 | 119 | 2 | 46 | 375 | 48 | 379 | 3.15e-151 | 432 |
| MS.gene89495.t1 | AT5G65140 | 61.538 | 351 | 129 | 3 | 24 | 371 | 20 | 367 | 3.76e-151 | 431 |
| MS.gene89495.t1 | AT4G39770 | 63.863 | 321 | 111 | 2 | 56 | 374 | 30 | 347 | 1.08e-150 | 429 |
| MS.gene89495.t1 | AT2G22190 | 61.159 | 345 | 130 | 2 | 28 | 372 | 10 | 350 | 7.49e-150 | 427 |
| MS.gene89495.t1 | AT1G78090 | 60.377 | 371 | 120 | 6 | 1 | 359 | 1 | 356 | 9.28e-150 | 427 |
| MS.gene89495.t1 | AT1G35910 | 63.664 | 333 | 109 | 4 | 51 | 375 | 39 | 367 | 1.96e-149 | 427 |
| MS.gene89495.t1 | AT1G22210 | 63.462 | 312 | 104 | 3 | 69 | 373 | 9 | 317 | 2.31e-145 | 415 |
| MS.gene89495.t1 | AT4G39770 | 64.706 | 306 | 103 | 2 | 56 | 359 | 30 | 332 | 8.17e-145 | 414 |
| MS.gene89495.t1 | AT2G22190 | 61.747 | 332 | 123 | 2 | 28 | 359 | 10 | 337 | 9.18e-145 | 414 |
| MS.gene89495.t1 | AT5G10100 | 62.893 | 318 | 112 | 2 | 46 | 359 | 37 | 352 | 3.32e-144 | 413 |
| MS.gene89495.t1 | AT5G10100 | 57.784 | 334 | 115 | 3 | 46 | 375 | 48 | 359 | 5.34e-132 | 382 |
| MS.gene89495.t1 | AT5G65140 | 58.410 | 327 | 129 | 4 | 6 | 328 | 1 | 324 | 2.12e-129 | 375 |
| MS.gene89495.t1 | AT5G51460 | 55.452 | 321 | 126 | 4 | 69 | 372 | 62 | 382 | 1.17e-121 | 357 |
| MS.gene89495.t1 | AT5G51460 | 55.452 | 321 | 126 | 4 | 69 | 372 | 62 | 382 | 1.17e-121 | 357 |
| MS.gene89495.t1 | AT4G22590 | 54.180 | 323 | 129 | 3 | 71 | 374 | 50 | 372 | 9.72e-121 | 354 |
| MS.gene89495.t1 | AT5G51460 | 55.280 | 322 | 126 | 4 | 69 | 372 | 62 | 383 | 5.32e-120 | 353 |
| MS.gene89495.t1 | AT5G51460 | 55.280 | 322 | 126 | 4 | 69 | 372 | 62 | 383 | 5.32e-120 | 353 |
| MS.gene89495.t1 | AT5G51460 | 55.280 | 322 | 126 | 4 | 69 | 372 | 62 | 383 | 5.32e-120 | 353 |
| MS.gene89495.t1 | AT4G12430 | 54.037 | 322 | 135 | 2 | 68 | 376 | 44 | 365 | 2.18e-117 | 345 |
| MS.gene89495.t1 | AT5G65140 | 59.507 | 284 | 109 | 3 | 24 | 304 | 20 | 300 | 4.16e-113 | 333 |
Find 77 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTCGACCAACTATTAAA+TGG | 0.176566 | 5.4:-49212850 | MS.gene89495:CDS |
| AACTTCAGTGTCTGAATTAA+TGG | 0.186430 | 5.4:-49214389 | MS.gene89495:CDS |
| TTACTCATGTAGGCTTTATC+TGG | 0.261967 | 5.4:+49213886 | None:intergenic |
| AAGCCATGGGATGGATATTA+AGG | 0.269464 | 5.4:-49213541 | MS.gene89495:CDS |
| CCTTGTGTTAGCTTTAGTTT+TGG | 0.279314 | 5.4:+49212887 | None:intergenic |
| AATTCAGACACTGAAGTTCT+TGG | 0.288315 | 5.4:+49214394 | None:intergenic |
| TTAGTGCTTCTCCTATTTGT+TGG | 0.289846 | 5.4:+49213516 | None:intergenic |
| GTGACTTTCCCAACATATTC+TGG | 0.318648 | 5.4:+49214479 | None:intergenic |
| GAGAAAACGAAGTGTGTTCC+AGG | 0.327309 | 5.4:-49213203 | MS.gene89495:CDS |
| CGCAATAGGGGCCAAGGGTG+TGG | 0.335378 | 5.4:-49212447 | MS.gene89495:CDS |
| TAAAGCCTACATGAGTAAAA+AGG | 0.339761 | 5.4:-49213881 | MS.gene89495:intron |
| GGCTTACAGTCCAATGAGTT+TGG | 0.362955 | 5.4:+49214209 | None:intergenic |
| AAACAATCTCATTAAGCCTT+TGG | 0.363708 | 5.4:-49214335 | MS.gene89495:CDS |
| TTATCTGGATCTGCTACAAT+TGG | 0.368355 | 5.4:+49213901 | None:intergenic |
| CCTTTGTCCCATTTAATAGT+TGG | 0.368647 | 5.4:+49212842 | None:intergenic |
| CAAATAATGTACAATACAAA+TGG | 0.375691 | 5.4:-49213967 | MS.gene89495:CDS |
| TTTCCCACTGCCATTGTTAG+TGG | 0.375841 | 5.4:-49213731 | MS.gene89495:CDS |
| AATGTATTTCCAATCTATAT+TGG | 0.376405 | 5.4:-49212649 | MS.gene89495:CDS |
| CTTGAATTTCTTACCTCAGA+TGG | 0.386100 | 5.4:+49212369 | None:intergenic |
| TGTAGCTATTTAGCTTTGTA+AGG | 0.388676 | 5.4:-49213587 | MS.gene89495:intron |
| GCTATTTAGCTTTGTAAGGT+TGG | 0.390975 | 5.4:-49213583 | MS.gene89495:CDS |
| GATTGTGAATGAGAGGTTAA+TGG | 0.392429 | 5.4:-49214452 | MS.gene89495:CDS |
| GAATTAATGGCTTTGTTTGG+TGG | 0.404929 | 5.4:-49214376 | MS.gene89495:CDS |
| TCTGAATTAATGGCTTTGTT+TGG | 0.409233 | 5.4:-49214379 | MS.gene89495:CDS |
| AATTAATGGCTTTGTTTGGT+GGG | 0.420794 | 5.4:-49214375 | MS.gene89495:CDS |
| TATTTAGAGTTGGGCACCAT+TGG | 0.421897 | 5.4:-49212942 | MS.gene89495:intron |
| GGGTCAGGTTTATAAGATCT+TGG | 0.424468 | 5.4:-49213228 | MS.gene89495:intron |
| AATTCGACCAACTATTAAAT+GGG | 0.427587 | 5.4:-49212849 | MS.gene89495:CDS |
| TATCTGGATCTGCTACAATT+GGG | 0.442252 | 5.4:+49213902 | None:intergenic |
| GCAATAGGGGCCAAGGGTGT+GGG | 0.454198 | 5.4:-49212446 | MS.gene89495:CDS |
| ATATTAAGGGTCCAACAAAT+AGG | 0.455858 | 5.4:-49213527 | MS.gene89495:CDS |
| CGATCGTCACCAATATAGAT+TGG | 0.456578 | 5.4:+49212640 | None:intergenic |
| AACCGATGAAGATGCTTTCA+AGG | 0.459255 | 5.4:-49212617 | MS.gene89495:intron |
| AAAATCGTGACCAAACTCAT+TGG | 0.474132 | 5.4:-49214219 | MS.gene89495:CDS |
| GCTACGAACCTCATTGATCA+TGG | 0.476130 | 5.4:+49213353 | None:intergenic |
| CTATTAAATGGGACAAAGGA+AGG | 0.480218 | 5.4:-49212838 | MS.gene89495:CDS |
| ATGACTAACCAGAATATGTT+GGG | 0.482279 | 5.4:-49214487 | MS.gene89495:CDS |
| TTATACTATGCTGGAAGCCA+TGG | 0.484718 | 5.4:-49213555 | MS.gene89495:CDS |
| AATGACTAACCAGAATATGT+TGG | 0.502586 | 5.4:-49214488 | MS.gene89495:CDS |
| TTGGCTGAATTATACTATGC+TGG | 0.505769 | 5.4:-49213564 | MS.gene89495:CDS |
| AAATAATGTACAATACAAAT+GGG | 0.510120 | 5.4:-49213966 | MS.gene89495:CDS |
| TTAGATGAGAGTGACATTGA+AGG | 0.514001 | 5.4:-49213768 | MS.gene89495:intron |
| GAAGTGTGTTCCAGGGGCTA+TGG | 0.519970 | 5.4:-49213195 | MS.gene89495:CDS |
| AGCCATGGGATGGATATTAA+GGG | 0.535930 | 5.4:-49213540 | MS.gene89495:CDS |
| TACCTTGAAAGCATCTTCAT+CGG | 0.538497 | 5.4:+49212615 | None:intergenic |
| AACACAAGGGAGAAAAGTGT+TGG | 0.542726 | 5.4:-49212873 | MS.gene89495:CDS |
| AGTAGGAGAAGAAGCTCTCA+TGG | 0.543615 | 5.4:+49214261 | None:intergenic |
| TTGAACATGTTCAAAGCAGA+AGG | 0.546219 | 5.4:+49213991 | None:intergenic |
| GACCCTTAATATCCATCCCA+TGG | 0.547681 | 5.4:+49213538 | None:intergenic |
| GTGTGTTCCAGGGGCTATGG+TGG | 0.549508 | 5.4:-49213192 | MS.gene89495:CDS |
| ATACAAGAATCCCACACCCT+TGG | 0.561032 | 5.4:+49212436 | None:intergenic |
| ATCTGGATCTGCTACAATTG+GGG | 0.562431 | 5.4:+49213903 | None:intergenic |
| AAGCTTACTTGTTCAGCCAA+TGG | 0.567677 | 5.4:+49212926 | None:intergenic |
| TCTTCCACTAACAATGGCAG+TGG | 0.568746 | 5.4:+49213727 | None:intergenic |
| ACATGTTCAAAGCAGAAGGA+TGG | 0.573560 | 5.4:+49213995 | None:intergenic |
| TGATCATTATCATCTTCCAA+AGG | 0.579315 | 5.4:+49214319 | None:intergenic |
| ATGGGCAAGAATTCACTAGC+AGG | 0.580507 | 5.4:+49213372 | None:intergenic |
| GATTCGTGTCTGGTTCGAGT+AGG | 0.581250 | 5.4:+49214244 | None:intergenic |
| CTATGCTGGAAGCCATGGGA+TGG | 0.581523 | 5.4:-49213550 | MS.gene89495:CDS |
| CCAAAACTAAAGCTAACACA+AGG | 0.588195 | 5.4:-49212887 | MS.gene89495:CDS |
| CTACGAACCTCATTGATCAT+GGG | 0.600560 | 5.4:+49213354 | None:intergenic |
| TCAGGTTTATAAGATCTTGG+TGG | 0.601263 | 5.4:-49213225 | MS.gene89495:intron |
| CCAACTATTAAATGGGACAA+AGG | 0.601344 | 5.4:-49212842 | MS.gene89495:CDS |
| TATTAAATGGGACAAAGGAA+GGG | 0.609414 | 5.4:-49212837 | MS.gene89495:CDS |
| TATACTATGCTGGAAGCCAT+GGG | 0.609558 | 5.4:-49213554 | MS.gene89495:CDS |
| CACTTTGCAAGATCCATCTG+AGG | 0.628755 | 5.4:-49212382 | MS.gene89495:intron |
| AGAAAACGAAGTGTGTTCCA+GGG | 0.637437 | 5.4:-49213202 | MS.gene89495:CDS |
| ATTTCAGGGTAATAATGATG+AGG | 0.638286 | 5.4:-49213406 | MS.gene89495:intron |
| TAAGCATCTTCCACTAACAA+TGG | 0.641229 | 5.4:+49213721 | None:intergenic |
| ATTCTTGCCCATGATCAATG+AGG | 0.645083 | 5.4:-49213361 | MS.gene89495:intron |
| GAAGATGATAATGATCACAA+AGG | 0.653543 | 5.4:-49214313 | MS.gene89495:CDS |
| CACGTGTGATTGTGAATGAG+AGG | 0.660978 | 5.4:-49214459 | MS.gene89495:CDS |
| GAGCAACTAAAGTTAACGCG+TGG | 0.664842 | 5.4:-49214291 | MS.gene89495:CDS |
| CTTCCACTAACAATGGCAGT+GGG | 0.666780 | 5.4:+49213728 | None:intergenic |
| GAAAACGAAGTGTGTTCCAG+GGG | 0.667596 | 5.4:-49213201 | MS.gene89495:CDS |
| CAAAACTAAAGCTAACACAA+GGG | 0.690741 | 5.4:-49212886 | MS.gene89495:CDS |
| TAGTGGAAGATGCTTAGACA+AGG | 0.695626 | 5.4:-49213714 | MS.gene89495:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAATAAAATAAATT+AGG | + | chr5.4:49213458-49213477 | None:intergenic | 0.0% |
| !!! | TTTATTTTATTTTTATATTT+GGG | - | chr5.4:49213465-49213484 | MS.gene89495:intron | 0.0% |
| !!! | TTTTATTTTATTTTTATATT+TGG | - | chr5.4:49213464-49213483 | MS.gene89495:intron | 0.0% |
| !! | AATAAAAATGTTAATATATG+TGG | + | chr5.4:49214173-49214192 | None:intergenic | 10.0% |
| !! | AATTAATTCCATTAATAAAT+TGG | - | chr5.4:49213965-49213984 | MS.gene89495:CDS | 10.0% |
| !!! | TAATTTTTATAAAGTTAGTA+AGG | + | chr5.4:49214135-49214154 | None:intergenic | 10.0% |
| !!! | TTCATTTAAATTTTGTATAT+AGG | - | chr5.4:49214422-49214441 | MS.gene89495:CDS | 10.0% |
| !! | AAATAATGTACAATACAAAT+GGG | - | chr5.4:49212747-49212766 | MS.gene89495:intron | 15.0% |
| !! | AATTTGGATATGAATAATAT+AGG | - | chr5.4:49214238-49214257 | MS.gene89495:CDS | 15.0% |
| !! | TATTTGTACCAATTTATTAA+TGG | + | chr5.4:49213976-49213995 | None:intergenic | 15.0% |
| !!! | ATAACAAAGTTTTTAAAACA+TGG | - | chr5.4:49213735-49213754 | MS.gene89495:CDS | 15.0% |
| !!! | ATTTTGTTTTATTTAGAGTT+GGG | - | chr5.4:49213762-49213781 | MS.gene89495:CDS | 15.0% |
| !!! | TTTAAAGTATTTCTATACTT+AGG | - | chr5.4:49213631-49213650 | MS.gene89495:intron | 15.0% |
| !!! | TTTAAATTTTGTATATAGGT+TGG | - | chr5.4:49214426-49214445 | MS.gene89495:CDS | 15.0% |
| !! | AAATAAAATAAATTAGGCAC+AGG | + | chr5.4:49213452-49213471 | None:intergenic | 20.0% |
| !! | AATGTATTTCCAATCTATAT+TGG | - | chr5.4:49214064-49214083 | MS.gene89495:intron | 20.0% |
| !! | ATGGTGTAACTAAAAAAATT+TGG | + | chr5.4:49213407-49213426 | None:intergenic | 20.0% |
| !! | ATTTCATCCATTATTATTTC+AGG | - | chr5.4:49213292-49213311 | MS.gene89495:intron | 20.0% |
| !! | CAAATAATGTACAATACAAA+TGG | - | chr5.4:49212746-49212765 | MS.gene89495:intron | 20.0% |
| !! | GTTATGATTCTAAATTATGT+TGG | - | chr5.4:49212563-49212582 | MS.gene89495:intron | 20.0% |
| !! | TTATTACCCTGAAATAATAA+TGG | + | chr5.4:49213302-49213321 | None:intergenic | 20.0% |
| !! | TTTCATCCATTATTATTTCA+GGG | - | chr5.4:49213293-49213312 | MS.gene89495:intron | 20.0% |
| !!! | CATTTTGTTTTATTTAGAGT+TGG | - | chr5.4:49213761-49213780 | MS.gene89495:CDS | 20.0% |
| !!! | TTTATTTTTATATTTGGGTC+AGG | - | chr5.4:49213470-49213489 | MS.gene89495:intron | 20.0% |
| ! | AAATTCGACCAACTATTAAA+TGG | - | chr5.4:49213863-49213882 | MS.gene89495:intron | 25.0% |
| ! | AATTCGACCAACTATTAAAT+GGG | - | chr5.4:49213864-49213883 | MS.gene89495:intron | 25.0% |
| ! | ATAAAACACGTTAATGATGA+TGG | - | chr5.4:49213679-49213698 | MS.gene89495:intron | 25.0% |
| ! | CAAACGTTAGTGAAAAAAAA+AGG | + | chr5.4:49212862-49212881 | None:intergenic | 25.0% |
| ! | GCAAGTTAGAATTATGATTA+CGG | - | chr5.4:49212640-49212659 | MS.gene89495:CDS | 25.0% |
| ! | GTGTAACTAAAAAAATTTGG+TGG | + | chr5.4:49213404-49213423 | None:intergenic | 25.0% |
| ! | TAAAACACGTTAATGATGAT+GGG | - | chr5.4:49213680-49213699 | MS.gene89495:intron | 25.0% |
| !!! | TTTTTGGTGTGTAAGTAATA+AGG | + | chr5.4:49212528-49212547 | None:intergenic | 25.0% |
| AAACAATCTCATTAAGCCTT+TGG | - | chr5.4:49212378-49212397 | MS.gene89495:intron | 30.0% | |
| AACTTCAGTGTCTGAATTAA+TGG | - | chr5.4:49212324-49212343 | MS.gene89495:intron | 30.0% | |
| ATATTAAGGGTCCAACAAAT+AGG | - | chr5.4:49213186-49213205 | MS.gene89495:CDS | 30.0% | |
| ATGACTAACCAGAATATGTT+GGG | - | chr5.4:49212226-49212245 | MS.gene89495:CDS | 30.0% | |
| ATTTCAGGGTAATAATGATG+AGG | - | chr5.4:49213307-49213326 | MS.gene89495:intron | 30.0% | |
| CAAAACTAAAGCTAACACAA+GGG | - | chr5.4:49213827-49213846 | MS.gene89495:intron | 30.0% | |
| GTTAGAATTATGATTACGGT+TGG | - | chr5.4:49212644-49212663 | MS.gene89495:CDS | 30.0% | |
| TAAAGCCTACATGAGTAAAA+AGG | - | chr5.4:49212832-49212851 | MS.gene89495:CDS | 30.0% | |
| TATTAAATGGGACAAAGGAA+GGG | - | chr5.4:49213876-49213895 | MS.gene89495:intron | 30.0% | |
| TGATCATTATCATCTTCCAA+AGG | + | chr5.4:49212397-49212416 | None:intergenic | 30.0% | |
| TGCTATATTACAGACAAATG+TGG | + | chr5.4:49212589-49212608 | None:intergenic | 30.0% | |
| ! | AATATAGGTTTTGCGCAATA+GGG | - | chr5.4:49214253-49214272 | MS.gene89495:CDS | 30.0% |
| ! | GAAGATGATAATGATCACAA+AGG | - | chr5.4:49212400-49212419 | MS.gene89495:CDS | 30.0% |
| ! | GTAGTTTTTCTTGACTATGA+TGG | - | chr5.4:49212779-49212798 | MS.gene89495:intron | 30.0% |
| ! | TAATATAGGTTTTGCGCAAT+AGG | - | chr5.4:49214252-49214271 | MS.gene89495:CDS | 30.0% |
| ! | TTTTCACTAACGTTTGATTC+TGG | - | chr5.4:49212866-49212885 | MS.gene89495:CDS | 30.0% |
| !! | AATTAATGGCTTTGTTTGGT+GGG | - | chr5.4:49212338-49212357 | MS.gene89495:intron | 30.0% |
| !! | TATAGGTTGGACAATTTTTG+CGG | - | chr5.4:49214439-49214458 | MS.gene89495:CDS | 30.0% |
| !! | TCTGAATTAATGGCTTTGTT+TGG | - | chr5.4:49212334-49212353 | MS.gene89495:intron | 30.0% |
| !! | TGTAGCTATTTAGCTTTGTA+AGG | - | chr5.4:49213126-49213145 | MS.gene89495:intron | 30.0% |
| !!! | CTAGTCAAACAGTCTTTTTT+TGG | + | chr5.4:49212544-49212563 | None:intergenic | 30.0% |
| !!! | CTTGTGTTAGCTTTAGTTTT+GGG | + | chr5.4:49213828-49213847 | None:intergenic | 30.0% |
| !!! | TAATGAGATTGTTTTTGTGC+TGG | + | chr5.4:49212372-49212391 | None:intergenic | 30.0% |
| AAAATCGTGACCAAACTCAT+TGG | - | chr5.4:49212494-49212513 | MS.gene89495:intron | 35.0% | |
| AATTCAGACACTGAAGTTCT+TGG | + | chr5.4:49212322-49212341 | None:intergenic | 35.0% | |
| AGGTAAAATCCCATACCTAA+TGG | + | chr5.4:49213432-49213451 | None:intergenic | 35.0% | |
| CCAAAACTAAAGCTAACACA+AGG | - | chr5.4:49213826-49213845 | MS.gene89495:intron | 35.0% | |
| CCAACTATTAAATGGGACAA+AGG | - | chr5.4:49213871-49213890 | MS.gene89495:intron | 35.0% | |
| CCTTTGTCCCATTTAATAGT+TGG | + | chr5.4:49213874-49213893 | None:intergenic | 35.0% | |
| CTATTAAATGGGACAAAGGA+AGG | - | chr5.4:49213875-49213894 | MS.gene89495:intron | 35.0% | |
| CTCTATCCAAATTATTGCGA+CGG | - | chr5.4:49213238-49213257 | MS.gene89495:intron | 35.0% | |
| CTTGAATTTCTTACCTCAGA+TGG | + | chr5.4:49214347-49214366 | None:intergenic | 35.0% | |
| GATTGTGAATGAGAGGTTAA+TGG | - | chr5.4:49212261-49212280 | MS.gene89495:CDS | 35.0% | |
| GGTAAAATCCCATACCTAAT+GGG | + | chr5.4:49213431-49213450 | None:intergenic | 35.0% | |
| TAAGCATCTTCCACTAACAA+TGG | + | chr5.4:49212995-49213014 | None:intergenic | 35.0% | |
| TAATCTCCGTCGCAATAATT+TGG | + | chr5.4:49213247-49213266 | None:intergenic | 35.0% | |
| TATCTGGATCTGCTACAATT+GGG | + | chr5.4:49212814-49212833 | None:intergenic | 35.0% | |
| TCAGGTTTATAAGATCTTGG+TGG | - | chr5.4:49213488-49213507 | MS.gene89495:intron | 35.0% | |
| TTAGATGAGAGTGACATTGA+AGG | - | chr5.4:49212945-49212964 | MS.gene89495:intron | 35.0% | |
| TTAGTGCTTCTCCTATTTGT+TGG | + | chr5.4:49213200-49213219 | None:intergenic | 35.0% | |
| TTAGTTACACCATTCCCATT+AGG | - | chr5.4:49213414-49213433 | MS.gene89495:intron | 35.0% | |
| TTATCTGGATCTGCTACAAT+TGG | + | chr5.4:49212815-49212834 | None:intergenic | 35.0% | |
| TTGAACATGTTCAAAGCAGA+AGG | + | chr5.4:49212725-49212744 | None:intergenic | 35.0% | |
| TTGGCTGAATTATACTATGC+TGG | - | chr5.4:49213149-49213168 | MS.gene89495:CDS | 35.0% | |
| ! | ATATAGGTTTTGCGCAATAG+GGG | - | chr5.4:49214254-49214273 | MS.gene89495:CDS | 35.0% |
| ! | GAATTTTTGCTAGAGTCACT+TGG | - | chr5.4:49213904-49213923 | MS.gene89495:CDS | 35.0% |
| ! | GCAAACCTTTTTACTCATGT+AGG | + | chr5.4:49212840-49212859 | None:intergenic | 35.0% |
| ! | GCTATGCTAACTTGTCAATT+TGG | - | chr5.4:49214222-49214241 | MS.gene89495:CDS | 35.0% |
| ! | TTACTCATGTAGGCTTTATC+TGG | + | chr5.4:49212830-49212849 | None:intergenic | 35.0% |
| !! | GAATTAATGGCTTTGTTTGG+TGG | - | chr5.4:49212337-49212356 | MS.gene89495:intron | 35.0% |
| !! | GCTATTTAGCTTTGTAAGGT+TGG | - | chr5.4:49213130-49213149 | MS.gene89495:intron | 35.0% |
| !! | TACCTTGAAAGCATCTTCAT+CGG | + | chr5.4:49214101-49214120 | None:intergenic | 35.0% |
| !!! | CCTTGTGTTAGCTTTAGTTT+TGG | + | chr5.4:49213829-49213848 | None:intergenic | 35.0% |
| AACCGATGAAGATGCTTTCA+AGG | - | chr5.4:49214096-49214115 | MS.gene89495:intron | 40.0% | |
| AAGCCATGGGATGGATATTA+AGG | - | chr5.4:49213172-49213191 | MS.gene89495:CDS | 40.0% | |
| AAGCTTACTTGTTCAGCCAA+TGG | + | chr5.4:49213790-49213809 | None:intergenic | 40.0% | |
| AATCCCATACCTAATGGGAA+TGG | + | chr5.4:49213426-49213445 | None:intergenic | 40.0% | |
| ACACCATTCCCATTAGGTAT+GGG | - | chr5.4:49213420-49213439 | MS.gene89495:intron | 40.0% | |
| ACAGACAAATGTGACTGATG+AGG | - | chr5.4:49212611-49212630 | MS.gene89495:intron | 40.0% | |
| ACATGTTCAAAGCAGAAGGA+TGG | + | chr5.4:49212721-49212740 | None:intergenic | 40.0% | |
| AGAAAACGAAGTGTGTTCCA+GGG | - | chr5.4:49213511-49213530 | MS.gene89495:intron | 40.0% | |
| AGCCATGGGATGGATATTAA+GGG | - | chr5.4:49213173-49213192 | MS.gene89495:CDS | 40.0% | |
| ATCTGGATCTGCTACAATTG+GGG | + | chr5.4:49212813-49212832 | None:intergenic | 40.0% | |
| ATTCTTGCCCATGATCAATG+AGG | - | chr5.4:49213352-49213371 | MS.gene89495:intron | 40.0% | |
| CGATCGTCACCAATATAGAT+TGG | + | chr5.4:49214076-49214095 | None:intergenic | 40.0% | |
| CGTTGACGAAAAGGTAACAA+TGG | - | chr5.4:49213581-49213600 | MS.gene89495:CDS | 40.0% | |
| CTACGAACCTCATTGATCAT+GGG | + | chr5.4:49213362-49213381 | None:intergenic | 40.0% | |
| GGGTCAGGTTTATAAGATCT+TGG | - | chr5.4:49213485-49213504 | MS.gene89495:intron | 40.0% | |
| GTGACTTTCCCAACATATTC+TGG | + | chr5.4:49212237-49212256 | None:intergenic | 40.0% | |
| TACACCATTCCCATTAGGTA+TGG | - | chr5.4:49213419-49213438 | MS.gene89495:intron | 40.0% | |
| TAGTGGAAGATGCTTAGACA+AGG | - | chr5.4:49212999-49213018 | MS.gene89495:intron | 40.0% | |
| TATACTATGCTGGAAGCCAT+GGG | - | chr5.4:49213159-49213178 | MS.gene89495:CDS | 40.0% | |
| TTATACTATGCTGGAAGCCA+TGG | - | chr5.4:49213158-49213177 | MS.gene89495:CDS | 40.0% | |
| ! | AACACAAGGGAGAAAAGTGT+TGG | - | chr5.4:49213840-49213859 | MS.gene89495:intron | 40.0% |
| ! | ACAATTTTTGCGGCATTTGG+TGG | - | chr5.4:49214449-49214468 | MS.gene89495:CDS | 40.0% |
| ! | TATTTAGAGTTGGGCACCAT+TGG | - | chr5.4:49213771-49213790 | MS.gene89495:intron | 40.0% |
| ! | TGGACAATTTTTGCGGCATT+TGG | - | chr5.4:49214446-49214465 | MS.gene89495:CDS | 40.0% |
| ! | TTTTCGCAACGTTGACGAAA+AGG | - | chr5.4:49213572-49213591 | MS.gene89495:CDS | 40.0% |
| !! | ACGATTTTCTGATTCGTGTC+TGG | + | chr5.4:49212482-49212501 | None:intergenic | 40.0% |
| AGTAGGAGAAGAAGCTCTCA+TGG | + | chr5.4:49212455-49212474 | None:intergenic | 45.0% | |
| ATACAAGAATCCCACACCCT+TGG | + | chr5.4:49214280-49214299 | None:intergenic | 45.0% | |
| ATGGGCAAGAATTCACTAGC+AGG | + | chr5.4:49213344-49213363 | None:intergenic | 45.0% | |
| CACGTGTGATTGTGAATGAG+AGG | - | chr5.4:49212254-49212273 | MS.gene89495:CDS | 45.0% | |
| CACTTTGCAAGATCCATCTG+AGG | - | chr5.4:49214331-49214350 | MS.gene89495:CDS | 45.0% | |
| CTTCCACTAACAATGGCAGT+GGG | + | chr5.4:49212988-49213007 | None:intergenic | 45.0% | |
| GAAAACGAAGTGTGTTCCAG+GGG | - | chr5.4:49213512-49213531 | MS.gene89495:CDS | 45.0% | |
| GACCCTTAATATCCATCCCA+TGG | + | chr5.4:49213178-49213197 | None:intergenic | 45.0% | |
| GAGAAAACGAAGTGTGTTCC+AGG | - | chr5.4:49213510-49213529 | MS.gene89495:intron | 45.0% | |
| GAGCAACTAAAGTTAACGCG+TGG | - | chr5.4:49212422-49212441 | MS.gene89495:CDS | 45.0% | |
| GCTACGAACCTCATTGATCA+TGG | + | chr5.4:49213363-49213382 | None:intergenic | 45.0% | |
| GGCTTACAGTCCAATGAGTT+TGG | + | chr5.4:49212507-49212526 | None:intergenic | 45.0% | |
| TCTTCCACTAACAATGGCAG+TGG | + | chr5.4:49212989-49213008 | None:intergenic | 45.0% | |
| TTTCCCACTGCCATTGTTAG+TGG | - | chr5.4:49212982-49213001 | MS.gene89495:intron | 45.0% | |
| ! | TTATTTTCCACCATAGCCCC+TGG | + | chr5.4:49213531-49213550 | None:intergenic | 45.0% |
| !! | TTTTGCGGCATTTGGTGGAT+TGG | - | chr5.4:49214454-49214473 | MS.gene89495:CDS | 45.0% |
| !!! | GCTTTGTTTGGTGGGCTTTT+AGG | - | chr5.4:49212346-49212365 | MS.gene89495:intron | 45.0% |
| !!! | TATTTTATTTTTTAATTTCT+AGG | - | chr5.4:49214025-49214044 | MS.gene89495:intron | 5.0% |
| !!! | TTTTTTATATATAACTAATT+TGG | - | chr5.4:49213082-49213101 | MS.gene89495:intron | 5.0% |
| ! | GATTCGTGTCTGGTTCGAGT+AGG | + | chr5.4:49212472-49212491 | None:intergenic | 50.0% |
| ! | TTTTGCGCAATAGGGGCCAA+GGG | - | chr5.4:49214261-49214280 | MS.gene89495:CDS | 50.0% |
| CTATGCTGGAAGCCATGGGA+TGG | - | chr5.4:49213163-49213182 | MS.gene89495:CDS | 55.0% | |
| GAAGTGTGTTCCAGGGGCTA+TGG | - | chr5.4:49213518-49213537 | MS.gene89495:CDS | 55.0% | |
| ! | GTTTTGCGCAATAGGGGCCA+AGG | - | chr5.4:49214260-49214279 | MS.gene89495:CDS | 55.0% |
| GTGTGTTCCAGGGGCTATGG+TGG | - | chr5.4:49213521-49213540 | MS.gene89495:CDS | 60.0% | |
| ! | GCAATAGGGGCCAAGGGTGT+GGG | - | chr5.4:49214267-49214286 | MS.gene89495:CDS | 60.0% |
| CGCAATAGGGGCCAAGGGTG+TGG | - | chr5.4:49214266-49214285 | MS.gene89495:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 49212226 | 49214509 | 49212226 | ID=MS.gene89495 |
| chr5.4 | mRNA | 49212226 | 49214509 | 49212226 | ID=MS.gene89495.t1;Parent=MS.gene89495 |
| chr5.4 | exon | 49214216 | 49214509 | 49214216 | ID=MS.gene89495.t1.exon1;Parent=MS.gene89495.t1 |
| chr5.4 | CDS | 49214216 | 49214509 | 49214216 | ID=cds.MS.gene89495.t1;Parent=MS.gene89495.t1 |
| chr5.4 | exon | 49213882 | 49214022 | 49213882 | ID=MS.gene89495.t1.exon2;Parent=MS.gene89495.t1 |
| chr5.4 | CDS | 49213882 | 49214022 | 49213882 | ID=cds.MS.gene89495.t1;Parent=MS.gene89495.t1 |
| chr5.4 | exon | 49213715 | 49213786 | 49213715 | ID=MS.gene89495.t1.exon3;Parent=MS.gene89495.t1 |
| chr5.4 | CDS | 49213715 | 49213786 | 49213715 | ID=cds.MS.gene89495.t1;Parent=MS.gene89495.t1 |
| chr5.4 | exon | 49213512 | 49213604 | 49213512 | ID=MS.gene89495.t1.exon4;Parent=MS.gene89495.t1 |
| chr5.4 | CDS | 49213512 | 49213604 | 49213512 | ID=cds.MS.gene89495.t1;Parent=MS.gene89495.t1 |
| chr5.4 | exon | 49213362 | 49213421 | 49213362 | ID=MS.gene89495.t1.exon5;Parent=MS.gene89495.t1 |
| chr5.4 | CDS | 49213362 | 49213421 | 49213362 | ID=cds.MS.gene89495.t1;Parent=MS.gene89495.t1 |
| chr5.4 | exon | 49213142 | 49213243 | 49213142 | ID=MS.gene89495.t1.exon6;Parent=MS.gene89495.t1 |
| chr5.4 | CDS | 49213142 | 49213243 | 49213142 | ID=cds.MS.gene89495.t1;Parent=MS.gene89495.t1 |
| chr5.4 | exon | 49212810 | 49212957 | 49212810 | ID=MS.gene89495.t1.exon7;Parent=MS.gene89495.t1 |
| chr5.4 | CDS | 49212810 | 49212957 | 49212810 | ID=cds.MS.gene89495.t1;Parent=MS.gene89495.t1 |
| chr5.4 | exon | 49212618 | 49212688 | 49212618 | ID=MS.gene89495.t1.exon8;Parent=MS.gene89495.t1 |
| chr5.4 | CDS | 49212618 | 49212688 | 49212618 | ID=cds.MS.gene89495.t1;Parent=MS.gene89495.t1 |
| chr5.4 | exon | 49212383 | 49212475 | 49212383 | ID=MS.gene89495.t1.exon9;Parent=MS.gene89495.t1 |
| chr5.4 | CDS | 49212383 | 49212475 | 49212383 | ID=cds.MS.gene89495.t1;Parent=MS.gene89495.t1 |
| chr5.4 | exon | 49212226 | 49212291 | 49212226 | ID=MS.gene89495.t1.exon10;Parent=MS.gene89495.t1 |
| chr5.4 | CDS | 49212226 | 49212291 | 49212226 | ID=cds.MS.gene89495.t1;Parent=MS.gene89495.t1 |
| Gene Sequence |
| Protein sequence |
