Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1436640 | AES95614.2 | 94.245 | 278 | 15 | 1 | 1 | 277 | 1 | 278 | 0.0 | 540 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1436640 | sp|C0SVS4|PHLB_ARATH | 50.174 | 287 | 121 | 11 | 2 | 274 | 1 | 279 | 5.83e-75 | 233 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1436640 | G7K874 | 94.245 | 278 | 15 | 1 | 1 | 277 | 1 | 278 | 0.0 | 540 |
Gene ID | Type | Classification |
---|---|---|
Msa1436640 | TF | GARP-G2-like |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0007810 | Msa1436640 | -0.806350 | 8.584917e-50 | -8.615850e-47 |
Msa0021400 | Msa1436640 | 0.827290 | 1.697186e-54 | -8.615850e-47 |
Msa0026250 | Msa1436640 | 0.817733 | 2.829445e-52 | -8.615850e-47 |
Msa0036550 | Msa1436640 | 0.816506 | 5.339739e-52 | -8.615850e-47 |
Msa0038010 | Msa1436640 | 0.806126 | 9.570051e-50 | -8.615850e-47 |
Msa0038150 | Msa1436640 | -0.820434 | 6.872346e-53 | -8.615850e-47 |
Msa0039750 | Msa1436640 | 0.801422 | 9.071654e-49 | -8.615850e-47 |
Msa0047560 | Msa1436640 | -0.812764 | 3.598006e-51 | -8.615850e-47 |
Msa0050310 | Msa1436640 | -0.808582 | 2.885750e-50 | -8.615850e-47 |
Msa0056230 | Msa1436640 | -0.817486 | 3.216436e-52 | -8.615850e-47 |
Msa0061130 | Msa1436640 | -0.805171 | 1.518701e-49 | -8.615850e-47 |
Msa0070580 | Msa1436640 | -0.800598 | 1.337115e-48 | -8.615850e-47 |
Msa0074060 | Msa1436640 | 0.802292 | 6.011752e-49 | -8.615850e-47 |
Msa0077570 | Msa1436640 | -0.833537 | 5.039430e-56 | -8.615850e-47 |
Msa0078160 | Msa1436640 | -0.822819 | 1.931390e-53 | -8.615850e-47 |
Msa0078170 | Msa1436640 | -0.802271 | 6.071088e-49 | -8.615850e-47 |
Msa0080820 | Msa1436640 | 0.806156 | 9.429759e-50 | -8.615850e-47 |
Msa0084190 | Msa1436640 | 0.809153 | 2.178320e-50 | -8.615850e-47 |
Msa0085690 | Msa1436640 | -0.805239 | 1.469491e-49 | -8.615850e-47 |
Msa0086620 | Msa1436640 | -0.800866 | 1.178819e-48 | -8.615850e-47 |
Msa0094560 | Msa1436640 | 0.803005 | 4.284806e-49 | -8.615850e-47 |
Msa0105680 | Msa1436640 | -0.811351 | 7.311141e-51 | -8.615850e-47 |
Msa1352600 | Msa1436640 | -0.807854 | 4.124575e-50 | -8.615850e-47 |
Msa1356450 | Msa1436640 | 0.810801 | 9.619242e-51 | -8.615850e-47 |
Msa1361580 | Msa1436640 | -0.803166 | 3.968603e-49 | -8.615850e-47 |
Msa1362520 | Msa1436640 | 0.801468 | 8.877058e-49 | -8.615850e-47 |
Msa1365130 | Msa1436640 | -0.804599 | 1.999283e-49 | -8.615850e-47 |
Msa1366140 | Msa1436640 | -0.835581 | 1.544269e-56 | -8.615850e-47 |
Msa1367900 | Msa1436640 | -0.806404 | 8.363136e-50 | -8.615850e-47 |
Msa1371270 | Msa1436640 | 0.812391 | 4.341484e-51 | -8.615850e-47 |
Msa1379270 | Msa1436640 | -0.801781 | 7.657109e-49 | -8.615850e-47 |
Msa1387100 | Msa1436640 | -0.809198 | 2.130246e-50 | -8.615850e-47 |
Msa1387450 | Msa1436640 | -0.840770 | 7.116676e-58 | -8.615850e-47 |
Msa1395720 | Msa1436640 | 0.810244 | 1.269225e-50 | -8.615850e-47 |
Msa1400290 | Msa1436640 | -0.814849 | 1.249546e-51 | -8.615850e-47 |
Msa1401300 | Msa1436640 | 0.802810 | 4.700830e-49 | -8.615850e-47 |
Msa1417220 | Msa1436640 | 0.807404 | 5.138845e-50 | -8.615850e-47 |
Msa1427600 | Msa1436640 | -0.811197 | 7.895452e-51 | -8.615850e-47 |
Msa1434300 | Msa1436640 | 0.833094 | 6.494792e-56 | -8.615850e-47 |
Msa1434700 | Msa1436640 | 0.825730 | 3.996805e-54 | -8.615850e-47 |
Msa1436640 | Msa1438510 | 0.820357 | 7.158321e-53 | -8.615850e-47 |
Msa1436640 | Msa1445530 | 0.812777 | 3.574246e-51 | -8.615850e-47 |
Msa1436640 | Msa1450290 | 0.817423 | 3.323126e-52 | -8.615850e-47 |
Msa1436640 | Msa1456040 | 0.818023 | 2.433228e-52 | -8.615850e-47 |
Msa1436640 | Msa1462210 | -0.803142 | 4.013526e-49 | -8.615850e-47 |
Msa0603310 | Msa1436640 | 0.801203 | 1.005719e-48 | -8.615850e-47 |
Msa0619530 | Msa1436640 | -0.803523 | 3.347347e-49 | -8.615850e-47 |
Msa0619690 | Msa1436640 | -0.803663 | 3.131071e-49 | -8.615850e-47 |
Msa0620900 | Msa1436640 | 0.805959 | 1.037556e-49 | -8.615850e-47 |
Msa0638300 | Msa1436640 | -0.804199 | 2.421960e-49 | -8.615850e-47 |
Msa0644340 | Msa1436640 | 0.808709 | 2.710893e-50 | -8.615850e-47 |
Msa0659230 | Msa1436640 | 0.802600 | 5.194466e-49 | -8.615850e-47 |
Msa0662230 | Msa1436640 | -0.802434 | 5.620064e-49 | -8.615850e-47 |
Msa0667680 | Msa1436640 | -0.800758 | 1.240161e-48 | -8.615850e-47 |
Msa0680460 | Msa1436640 | 0.803865 | 2.842113e-49 | -8.615850e-47 |
Msa0685390 | Msa1436640 | -0.837227 | 5.886820e-57 | -8.615850e-47 |
Msa0685610 | Msa1436640 | 0.854298 | 1.350668e-61 | -8.615850e-47 |
Msa0706690 | Msa1436640 | 0.814228 | 1.714162e-51 | -8.615850e-47 |
Msa0714230 | Msa1436640 | -0.835033 | 2.123427e-56 | -8.615850e-47 |
Msa0717030 | Msa1436640 | 0.800860 | 1.182166e-48 | -8.615850e-47 |
Msa0742370 | Msa1436640 | -0.805836 | 1.101334e-49 | -8.615850e-47 |
Msa0755480 | Msa1436640 | -0.829044 | 6.414364e-55 | -8.615850e-47 |
Msa0756670 | Msa1436640 | -0.802815 | 4.690683e-49 | -8.615850e-47 |
Msa0769910 | Msa1436640 | -0.802628 | 5.125306e-49 | -8.615850e-47 |
Msa0770540 | Msa1436640 | -0.802524 | 5.386718e-49 | -8.615850e-47 |
Msa0790650 | Msa1436640 | -0.811012 | 8.659993e-51 | -8.615850e-47 |
Msa0795910 | Msa1436640 | -0.801116 | 1.047967e-48 | -8.615850e-47 |
Msa0800120 | Msa1436640 | 0.802167 | 6.378046e-49 | -8.615850e-47 |
Msa0800150 | Msa1436640 | 0.816892 | 4.374439e-52 | -8.615850e-47 |
Msa0801920 | Msa1436640 | -0.804167 | 2.460317e-49 | -8.615850e-47 |
Msa0823480 | Msa1436640 | -0.806955 | 6.398145e-50 | -8.615850e-47 |
Msa0827340 | Msa1436640 | -0.823764 | 1.161651e-53 | -8.615850e-47 |
Msa0829250 | Msa1436640 | -0.802280 | 6.045569e-49 | -8.615850e-47 |
Msa0838120 | Msa1436640 | -0.804706 | 1.898976e-49 | -8.615850e-47 |
Msa0840540 | Msa1436640 | 0.954349 | 3.611017e-112 | -8.615850e-47 |
Msa0130360 | Msa1436640 | 0.833705 | 4.573038e-56 | -8.615850e-47 |
Msa0136180 | Msa1436640 | -0.804978 | 1.666549e-49 | -8.615850e-47 |
Msa0137010 | Msa1436640 | -0.804411 | 2.188716e-49 | -8.615850e-47 |
Msa0145990 | Msa1436640 | -0.804016 | 2.644116e-49 | -8.615850e-47 |
Msa0152190 | Msa1436640 | -0.836030 | 1.188416e-56 | -8.615850e-47 |
Msa0173380 | Msa1436640 | 0.818067 | 2.378566e-52 | -8.615850e-47 |
Msa0192830 | Msa1436640 | 0.805688 | 1.182981e-49 | -8.615850e-47 |
Msa0206370 | Msa1436640 | 0.809485 | 1.848285e-50 | -8.615850e-47 |
Msa0211460 | Msa1436640 | 0.801049 | 1.081764e-48 | -8.615850e-47 |
Msa0212950 | Msa1436640 | -0.809338 | 1.988132e-50 | -8.615850e-47 |
Msa0227790 | Msa1436640 | 0.814240 | 1.703753e-51 | -8.615850e-47 |
Msa0230920 | Msa1436640 | 0.805110 | 1.563829e-49 | -8.615850e-47 |
Msa1231440 | Msa1436640 | 0.839412 | 1.609805e-57 | -8.615850e-47 |
Msa1242160 | Msa1436640 | 0.817300 | 3.541416e-52 | -8.615850e-47 |
Msa1255030 | Msa1436640 | -0.806572 | 7.709090e-50 | -8.615850e-47 |
Msa1256490 | Msa1436640 | -0.806410 | 8.338394e-50 | -8.615850e-47 |
Msa1263370 | Msa1436640 | 0.804930 | 1.705259e-49 | -8.615850e-47 |
Msa1265570 | Msa1436640 | 0.802463 | 5.543342e-49 | -8.615850e-47 |
Msa1266120 | Msa1436640 | -0.819186 | 1.325600e-52 | -8.615850e-47 |
Msa1268360 | Msa1436640 | 0.806329 | 8.673357e-50 | -8.615850e-47 |
Msa1270860 | Msa1436640 | -0.803399 | 3.551335e-49 | -8.615850e-47 |
Msa1273320 | Msa1436640 | 0.829873 | 4.033899e-55 | -8.615850e-47 |
Msa1278000 | Msa1436640 | 0.834050 | 3.749042e-56 | -8.615850e-47 |
Msa1279200 | Msa1436640 | -0.810151 | 1.329245e-50 | -8.615850e-47 |
Msa1283930 | Msa1436640 | 0.807304 | 5.396922e-50 | -8.615850e-47 |
Msa1286860 | Msa1436640 | -0.817975 | 2.495471e-52 | -8.615850e-47 |
Msa1287100 | Msa1436640 | -0.815653 | 8.281028e-52 | -8.615850e-47 |
Msa1290090 | Msa1436640 | -0.813134 | 2.985591e-51 | -8.615850e-47 |
Msa1295210 | Msa1436640 | -0.827567 | 1.456994e-54 | -8.615850e-47 |
Msa1295480 | Msa1436640 | -0.815071 | 1.115462e-51 | -8.615850e-47 |
Msa1296810 | Msa1436640 | -0.810031 | 1.410996e-50 | -8.615850e-47 |
Msa1302630 | Msa1436640 | 0.820641 | 6.160594e-53 | -8.615850e-47 |
Msa1322960 | Msa1436640 | 0.810689 | 1.017339e-50 | -8.615850e-47 |
Msa1328680 | Msa1436640 | -0.802304 | 5.979327e-49 | -8.615850e-47 |
Msa1331570 | Msa1436640 | -0.811956 | 5.401018e-51 | -8.615850e-47 |
Msa1343460 | Msa1436640 | 0.813383 | 2.631533e-51 | -8.615850e-47 |
Msa0369580 | Msa1436640 | -0.813934 | 1.990274e-51 | -8.615850e-47 |
Msa0371350 | Msa1436640 | -0.820638 | 6.171275e-53 | -8.615850e-47 |
Msa0372100 | Msa1436640 | 0.838800 | 2.319177e-57 | -8.615850e-47 |
Msa0384590 | Msa1436640 | 0.823511 | 1.331528e-53 | -8.615850e-47 |
Msa0419420 | Msa1436640 | -0.811541 | 6.650802e-51 | -8.615850e-47 |
Msa0432200 | Msa1436640 | 0.801469 | 8.874770e-49 | -8.615850e-47 |
Msa0434660 | Msa1436640 | 0.819755 | 9.834293e-53 | -8.615850e-47 |
Msa0450890 | Msa1436640 | -0.812049 | 5.153667e-51 | -8.615850e-47 |
Msa0463820 | Msa1436640 | -0.825694 | 4.077276e-54 | -8.615850e-47 |
Msa0469770 | Msa1436640 | -0.802179 | 6.344365e-49 | -8.615850e-47 |
Msa0471130 | Msa1436640 | -0.803403 | 3.545517e-49 | -8.615850e-47 |
Msa0480900 | Msa1436640 | -0.828143 | 1.058910e-54 | -8.615850e-47 |
Msa1038860 | Msa1436640 | 0.805216 | 1.485874e-49 | -8.615850e-47 |
Msa1039440 | Msa1436640 | -0.809732 | 1.635678e-50 | -8.615850e-47 |
Msa1047300 | Msa1436640 | 0.804364 | 2.238703e-49 | -8.615850e-47 |
Msa1047340 | Msa1436640 | 0.802694 | 4.968043e-49 | -8.615850e-47 |
Msa1057620 | Msa1436640 | -0.810430 | 1.157350e-50 | -8.615850e-47 |
Msa1078590 | Msa1436640 | -0.801849 | 7.416424e-49 | -8.615850e-47 |
Msa1078760 | Msa1436640 | -0.801418 | 9.088064e-49 | -8.615850e-47 |
Msa1085560 | Msa1436640 | 0.822283 | 2.573225e-53 | -8.615850e-47 |
Msa1088740 | Msa1436640 | -0.805557 | 1.260409e-49 | -8.615850e-47 |
Msa0253230 | Msa1436640 | -0.812225 | 4.717582e-51 | -8.615850e-47 |
Msa0258910 | Msa1436640 | 0.812307 | 4.528219e-51 | -8.615850e-47 |
Msa0261020 | Msa1436640 | -0.800644 | 1.308139e-48 | -8.615850e-47 |
Msa0267450 | Msa1436640 | -0.817753 | 2.800222e-52 | -8.615850e-47 |
Msa0267510 | Msa1436640 | -0.818840 | 1.588988e-52 | -8.615850e-47 |
Msa0269220 | Msa1436640 | -0.829977 | 3.805285e-55 | -8.615850e-47 |
Msa0270830 | Msa1436640 | -0.802207 | 6.259677e-49 | -8.615850e-47 |
Msa0279090 | Msa1436640 | -0.807111 | 5.928327e-50 | -8.615850e-47 |
Msa0279810 | Msa1436640 | 0.809002 | 2.346330e-50 | -8.615850e-47 |
Msa0292060 | Msa1436640 | -0.800660 | 1.298799e-48 | -8.615850e-47 |
Msa0300470 | Msa1436640 | 0.810402 | 1.173254e-50 | -8.615850e-47 |
Msa0305630 | Msa1436640 | -0.804511 | 2.085880e-49 | -8.615850e-47 |
Msa0319220 | Msa1436640 | 0.802755 | 4.826109e-49 | -8.615850e-47 |
Msa0336430 | Msa1436640 | 0.826405 | 2.762253e-54 | -8.615850e-47 |
Msa0336460 | Msa1436640 | 0.829815 | 4.167049e-55 | -8.615850e-47 |
Msa0336520 | Msa1436640 | 0.816826 | 4.526258e-52 | -8.615850e-47 |
Msa0337970 | Msa1436640 | 0.814807 | 1.276300e-51 | -8.615850e-47 |
Msa1111910 | Msa1436640 | 0.830730 | 2.491049e-55 | -8.615850e-47 |
Msa1129880 | Msa1436640 | -0.808112 | 3.634818e-50 | -8.615850e-47 |
Msa1132880 | Msa1436640 | -0.802100 | 6.586171e-49 | -8.615850e-47 |
Msa1133750 | Msa1436640 | 0.828653 | 7.975101e-55 | -8.615850e-47 |
Msa1154060 | Msa1436640 | 0.804011 | 2.651173e-49 | -8.615850e-47 |
Msa1154320 | Msa1436640 | 0.845705 | 3.437302e-59 | -8.615850e-47 |
Msa1169600 | Msa1436640 | -0.800959 | 1.128244e-48 | -8.615850e-47 |
Msa1184680 | Msa1436640 | 0.804759 | 1.851516e-49 | -8.615850e-47 |
Msa1191530 | Msa1436640 | -0.818129 | 2.303072e-52 | -8.615850e-47 |
Msa1194480 | Msa1436640 | -0.808715 | 2.703238e-50 | -8.615850e-47 |
Msa1197720 | Msa1436640 | 0.820436 | 6.866773e-53 | -8.615850e-47 |
Msa1199540 | Msa1436640 | -0.806688 | 7.285640e-50 | -8.615850e-47 |
Msa1200360 | Msa1436640 | 0.819093 | 1.391973e-52 | -8.615850e-47 |
Msa1202220 | Msa1436640 | -0.812830 | 3.480648e-51 | -8.615850e-47 |
Msa1203650 | Msa1436640 | 0.810904 | 9.138768e-51 | -8.615850e-47 |
Msa1204870 | Msa1436640 | -0.807650 | 4.556875e-50 | -8.615850e-47 |
Msa1204900 | Msa1436640 | -0.811238 | 7.735928e-51 | -8.615850e-47 |
Msa1223710 | Msa1436640 | 0.836185 | 1.085292e-56 | -8.615850e-47 |
Msa0521060 | Msa1436640 | 0.805566 | 1.254644e-49 | -8.615850e-47 |
Msa0522540 | Msa1436640 | 0.821030 | 5.015282e-53 | -8.615850e-47 |
Msa0525180 | Msa1436640 | -0.803782 | 2.957962e-49 | -8.615850e-47 |
Msa0526150 | Msa1436640 | 0.801234 | 9.914159e-49 | -8.615850e-47 |
Msa0540640 | Msa1436640 | 0.806598 | 7.609788e-50 | -8.615850e-47 |
Msa0541880 | Msa1436640 | 0.855745 | 5.132890e-62 | -8.615850e-47 |
Msa0541940 | Msa1436640 | 0.846321 | 2.337457e-59 | -8.615850e-47 |
Msa0548420 | Msa1436640 | 0.803748 | 3.005988e-49 | -8.615850e-47 |
Msa0566090 | Msa1436640 | -0.803774 | 2.969294e-49 | -8.615850e-47 |
Msa0566280 | Msa1436640 | 0.802956 | 4.385628e-49 | -8.615850e-47 |
Msa0568460 | Msa1436640 | -0.813206 | 2.877761e-51 | -8.615850e-47 |
Msa0568920 | Msa1436640 | 0.815553 | 8.713551e-52 | -8.615850e-47 |
Msa0575950 | Msa1436640 | 0.836280 | 1.026502e-56 | -8.615850e-47 |
Msa0580410 | Msa1436640 | -0.800553 | 1.365529e-48 | -8.615850e-47 |
Msa0590620 | Msa1436640 | -0.811146 | 8.099434e-51 | -8.615850e-47 |
Msa0598470 | Msa1436640 | -0.802010 | 6.871555e-49 | -8.615850e-47 |
Msa0847140 | Msa1436640 | 0.811143 | 8.112636e-51 | -8.615850e-47 |
Msa0848670 | Msa1436640 | -0.805267 | 1.449715e-49 | -8.615850e-47 |
Msa0904590 | Msa1436640 | 0.812452 | 4.208735e-51 | -8.615850e-47 |
Msa0909260 | Msa1436640 | 0.815152 | 1.069949e-51 | -8.615850e-47 |
Msa0921860 | Msa1436640 | 0.833194 | 6.135775e-56 | -8.615850e-47 |
Msa0936630 | Msa1436640 | 0.801076 | 1.068041e-48 | -8.615850e-47 |
Msa0941150 | Msa1436640 | -0.816790 | 4.612576e-52 | -8.615850e-47 |
Msa0958830 | Msa1436640 | 0.832089 | 1.153080e-55 | -8.615850e-47 |
Msa0970040 | Msa1436640 | 0.820745 | 5.830269e-53 | -8.615850e-47 |
Msa0973850 | Msa1436640 | 0.810632 | 1.046549e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1436640 | MtrunA17_Chr5g0409731 | 94.182 | 275 | 15 | 1 | 1 | 274 | 1 | 275 | 0.0 | 533 |
Msa1436640 | MtrunA17_Chr8g0356501 | 46.860 | 207 | 86 | 6 | 1 | 195 | 13 | 207 | 1.04e-52 | 175 |
Msa1436640 | MtrunA17_Chr2g0321461 | 51.075 | 186 | 81 | 4 | 18 | 193 | 38 | 223 | 1.07e-50 | 171 |
Msa1436640 | MtrunA17_Chr6g0461641 | 50.777 | 193 | 85 | 4 | 18 | 204 | 35 | 223 | 7.52e-50 | 169 |
Msa1436640 | MtrunA17_Chr2g0310011 | 49.718 | 177 | 74 | 4 | 10 | 184 | 22 | 185 | 8.44e-49 | 165 |
Msa1436640 | MtrunA17_Chr7g0254981 | 55.245 | 143 | 55 | 2 | 25 | 167 | 50 | 183 | 2.56e-47 | 159 |
Msa1436640 | MtrunA17_Chr4g0042451 | 51.592 | 157 | 69 | 3 | 18 | 171 | 10 | 162 | 7.13e-46 | 157 |
Msa1436640 | MtrunA17_Chr2g0291021 | 39.526 | 253 | 127 | 5 | 25 | 270 | 49 | 282 | 1.40e-44 | 153 |
Msa1436640 | MtrunA17_Chr5g0417521 | 51.282 | 156 | 70 | 4 | 19 | 171 | 9 | 161 | 3.23e-44 | 153 |
Msa1436640 | MtrunA17_Chr2g0290991 | 50.588 | 170 | 74 | 5 | 7 | 171 | 20 | 184 | 2.04e-43 | 150 |
Msa1436640 | MtrunA17_Chr1g0197171 | 51.923 | 156 | 67 | 4 | 18 | 171 | 37 | 186 | 2.98e-43 | 149 |
Msa1436640 | MtrunA17_Chr7g0274471 | 46.012 | 163 | 76 | 3 | 25 | 187 | 218 | 368 | 3.64e-36 | 134 |
Msa1436640 | MtrunA17_Chr7g0261911 | 49.645 | 141 | 59 | 2 | 25 | 165 | 262 | 390 | 5.12e-36 | 134 |
Msa1436640 | MtrunA17_Chr1g0190301 | 46.622 | 148 | 67 | 3 | 18 | 165 | 168 | 303 | 5.05e-34 | 127 |
Msa1436640 | MtrunA17_Chr1g0175091 | 44.755 | 143 | 65 | 2 | 25 | 167 | 258 | 386 | 1.11e-33 | 127 |
Msa1436640 | MtrunA17_Chr7g0258551 | 41.497 | 147 | 73 | 4 | 25 | 171 | 212 | 345 | 2.35e-30 | 117 |
Msa1436640 | MtrunA17_Chr7g0242521 | 38.732 | 142 | 69 | 3 | 25 | 162 | 13 | 140 | 2.75e-25 | 100 |
Msa1436640 | MtrunA17_Chr1g0175071 | 34.286 | 175 | 91 | 4 | 12 | 178 | 159 | 317 | 1.84e-20 | 89.4 |
Msa1436640 | MtrunA17_Chr1g0175081 | 46.377 | 69 | 37 | 0 | 27 | 95 | 24 | 92 | 5.10e-19 | 80.1 |
Msa1436640 | MtrunA17_Chr1g0210911 | 47.059 | 102 | 42 | 3 | 1 | 97 | 1 | 95 | 1.17e-18 | 84.3 |
Msa1436640 | MtrunA17_Chr7g0243081 | 62.069 | 58 | 22 | 0 | 21 | 78 | 67 | 124 | 1.92e-18 | 84.0 |
Msa1436640 | MtrunA17_Chr1g0162931 | 58.209 | 67 | 28 | 0 | 12 | 78 | 5 | 71 | 2.61e-18 | 82.4 |
Msa1436640 | MtrunA17_Chr6g0479431 | 61.667 | 60 | 23 | 0 | 26 | 85 | 203 | 262 | 1.22e-17 | 81.6 |
Msa1436640 | MtrunA17_Chr8g0366281 | 69.811 | 53 | 16 | 0 | 26 | 78 | 174 | 226 | 1.70e-17 | 81.3 |
Msa1436640 | MtrunA17_Chr2g0288601 | 70.000 | 50 | 15 | 0 | 26 | 75 | 72 | 121 | 1.75e-17 | 77.0 |
Msa1436640 | MtrunA17_Chr5g0410741 | 69.811 | 53 | 16 | 0 | 26 | 78 | 220 | 272 | 5.61e-17 | 80.1 |
Msa1436640 | MtrunA17_Chr1g0154261 | 67.925 | 53 | 17 | 0 | 26 | 78 | 127 | 179 | 5.96e-17 | 79.0 |
Msa1436640 | MtrunA17_Chr8g0379121 | 51.389 | 72 | 28 | 1 | 7 | 78 | 100 | 164 | 8.78e-17 | 79.7 |
Msa1436640 | MtrunA17_Chr2g0320231 | 51.316 | 76 | 31 | 1 | 3 | 78 | 81 | 150 | 9.26e-17 | 79.3 |
Msa1436640 | MtrunA17_Chr3g0095611 | 48.611 | 72 | 30 | 1 | 7 | 78 | 8 | 72 | 1.49e-16 | 76.3 |
Msa1436640 | MtrunA17_Chr3g0109981 | 67.925 | 53 | 17 | 0 | 26 | 78 | 275 | 327 | 1.52e-16 | 79.0 |
Msa1436640 | MtrunA17_Chr7g0258531 | 36.913 | 149 | 72 | 5 | 25 | 168 | 213 | 344 | 7.28e-16 | 76.6 |
Msa1436640 | MtrunA17_Chr2g0283951 | 48.611 | 72 | 37 | 0 | 4 | 75 | 68 | 139 | 2.91e-14 | 72.0 |
Msa1436640 | MtrunA17_Chr7g0275401 | 40.000 | 90 | 43 | 3 | 25 | 114 | 192 | 270 | 4.36e-12 | 65.1 |
Msa1436640 | MtrunA17_Chr7g0255711 | 56.364 | 55 | 23 | 1 | 25 | 79 | 91 | 144 | 4.69e-12 | 65.1 |
Msa1436640 | MtrunA17_Chr4g0067981 | 56.364 | 55 | 23 | 1 | 25 | 79 | 215 | 268 | 5.71e-12 | 65.9 |
Msa1436640 | MtrunA17_Chr4g0062921 | 54.098 | 61 | 26 | 1 | 25 | 85 | 235 | 293 | 5.77e-12 | 65.5 |
Msa1436640 | MtrunA17_Chr5g0402631 | 45.946 | 74 | 38 | 1 | 25 | 98 | 214 | 285 | 6.11e-12 | 65.1 |
Msa1436640 | MtrunA17_Chr2g0304841 | 52.727 | 55 | 25 | 1 | 25 | 79 | 213 | 266 | 6.24e-12 | 65.5 |
Msa1436640 | MtrunA17_Chr1g0198601 | 50.820 | 61 | 28 | 1 | 25 | 85 | 211 | 269 | 7.56e-12 | 65.1 |
Msa1436640 | MtrunA17_Chr4g0031961 | 54.545 | 55 | 24 | 1 | 25 | 79 | 131 | 184 | 1.05e-11 | 64.3 |
Msa1436640 | MtrunA17_Chr1g0161431 | 52.727 | 55 | 25 | 1 | 25 | 79 | 200 | 253 | 1.33e-11 | 64.7 |
Msa1436640 | MtrunA17_Chr4g0045361 | 54.098 | 61 | 26 | 1 | 25 | 85 | 274 | 332 | 1.42e-11 | 64.3 |
Msa1436640 | MtrunA17_Chr4g0009901 | 46.154 | 65 | 32 | 2 | 25 | 89 | 168 | 229 | 1.99e-11 | 63.2 |
Msa1436640 | MtrunA17_Chr1g0149841 | 54.237 | 59 | 26 | 1 | 21 | 79 | 187 | 244 | 2.19e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1436640 | AT5G45580.2 | 50.174 | 287 | 121 | 11 | 2 | 274 | 1 | 279 | 5.92e-76 | 233 |
Msa1436640 | AT5G45580.1 | 50.929 | 269 | 111 | 10 | 20 | 274 | 2 | 263 | 4.72e-74 | 227 |
Msa1436640 | AT3G24120.1 | 52.747 | 182 | 82 | 3 | 16 | 194 | 32 | 212 | 2.53e-58 | 188 |
Msa1436640 | AT4G13640.1 | 50.286 | 175 | 85 | 1 | 16 | 188 | 28 | 202 | 1.46e-57 | 186 |
Msa1436640 | AT3G24120.2 | 51.892 | 185 | 82 | 4 | 16 | 194 | 32 | 215 | 3.92e-56 | 182 |
Msa1436640 | AT4G13640.2 | 49.438 | 178 | 85 | 2 | 16 | 188 | 28 | 205 | 2.23e-55 | 181 |
Msa1436640 | AT3G04030.3 | 48.241 | 199 | 82 | 4 | 7 | 193 | 29 | 218 | 1.71e-51 | 173 |
Msa1436640 | AT5G18240.1 | 48.205 | 195 | 88 | 4 | 7 | 193 | 29 | 218 | 5.02e-51 | 172 |
Msa1436640 | AT5G18240.4 | 48.205 | 195 | 88 | 4 | 7 | 193 | 29 | 218 | 5.02e-51 | 172 |
Msa1436640 | AT1G79430.2 | 51.829 | 164 | 64 | 4 | 10 | 171 | 21 | 171 | 1.32e-48 | 165 |
Msa1436640 | AT3G04030.2 | 47.236 | 199 | 83 | 5 | 7 | 193 | 29 | 217 | 2.04e-48 | 165 |
Msa1436640 | AT3G12730.1 | 47.273 | 165 | 69 | 4 | 18 | 173 | 16 | 171 | 9.40e-48 | 159 |
Msa1436640 | AT5G18240.5 | 47.179 | 195 | 88 | 5 | 7 | 193 | 29 | 216 | 1.45e-47 | 163 |
Msa1436640 | AT3G04030.1 | 46.231 | 199 | 80 | 5 | 7 | 193 | 29 | 212 | 1.16e-46 | 160 |
Msa1436640 | AT5G18240.2 | 46.154 | 195 | 86 | 5 | 7 | 193 | 29 | 212 | 6.24e-46 | 159 |
Msa1436640 | AT5G18240.3 | 46.154 | 195 | 86 | 5 | 7 | 193 | 29 | 212 | 6.24e-46 | 159 |
Msa1436640 | AT1G69580.1 | 49.398 | 166 | 79 | 2 | 18 | 178 | 27 | 192 | 1.21e-45 | 157 |
Msa1436640 | AT1G69580.2 | 48.503 | 167 | 80 | 2 | 18 | 178 | 27 | 193 | 5.97e-45 | 155 |
Msa1436640 | AT2G01060.1 | 54.545 | 143 | 54 | 2 | 25 | 167 | 15 | 146 | 1.18e-43 | 150 |
Msa1436640 | AT3G13040.3 | 46.250 | 160 | 76 | 2 | 25 | 181 | 241 | 393 | 7.09e-38 | 139 |
Msa1436640 | AT3G13040.1 | 46.250 | 160 | 76 | 2 | 25 | 181 | 241 | 393 | 7.09e-38 | 139 |
Msa1436640 | AT3G13040.2 | 46.250 | 160 | 76 | 2 | 25 | 181 | 241 | 393 | 7.09e-38 | 139 |
Msa1436640 | AT4G28610.1 | 45.000 | 160 | 76 | 3 | 25 | 184 | 225 | 372 | 1.15e-34 | 129 |
Msa1436640 | AT5G06800.1 | 45.455 | 143 | 65 | 3 | 25 | 167 | 192 | 321 | 4.88e-33 | 124 |
Msa1436640 | AT5G06800.2 | 44.056 | 143 | 72 | 3 | 25 | 167 | 192 | 326 | 9.86e-33 | 124 |
Msa1436640 | AT5G29000.1 | 44.828 | 145 | 67 | 2 | 25 | 167 | 188 | 321 | 2.63e-32 | 122 |
Msa1436640 | AT5G29000.3 | 44.828 | 145 | 67 | 2 | 25 | 167 | 188 | 321 | 2.63e-32 | 122 |
Msa1436640 | AT3G04450.4 | 44.521 | 146 | 66 | 2 | 25 | 167 | 198 | 331 | 3.92e-32 | 122 |
Msa1436640 | AT3G04450.2 | 44.521 | 146 | 66 | 2 | 25 | 167 | 198 | 331 | 3.92e-32 | 122 |
Msa1436640 | AT5G29000.2 | 44.828 | 145 | 67 | 2 | 25 | 167 | 231 | 364 | 4.84e-32 | 122 |
Msa1436640 | AT3G04450.1 | 44.521 | 146 | 66 | 2 | 25 | 167 | 238 | 371 | 5.33e-32 | 122 |
Msa1436640 | AT5G45580.3 | 39.815 | 216 | 109 | 10 | 73 | 274 | 16 | 224 | 5.37e-31 | 115 |
Msa1436640 | AT3G04030.5 | 46.309 | 149 | 61 | 3 | 57 | 193 | 1 | 142 | 8.23e-29 | 112 |
Msa1436640 | AT2G20400.2 | 43.885 | 139 | 67 | 2 | 27 | 165 | 233 | 360 | 2.23e-27 | 109 |
Msa1436640 | AT2G20400.1 | 43.165 | 139 | 67 | 2 | 27 | 165 | 233 | 359 | 1.13e-26 | 107 |
Msa1436640 | AT5G18240.6 | 42.759 | 145 | 66 | 4 | 57 | 193 | 1 | 136 | 2.78e-24 | 100 |
Msa1436640 | AT3G04030.4 | 43.624 | 149 | 59 | 4 | 57 | 193 | 1 | 136 | 4.49e-24 | 99.4 |
Msa1436640 | AT2G06020.1 | 46.296 | 108 | 38 | 3 | 21 | 113 | 82 | 184 | 5.08e-23 | 96.3 |
Msa1436640 | AT1G79430.1 | 47.009 | 117 | 49 | 3 | 57 | 171 | 1 | 106 | 1.29e-22 | 95.1 |
Msa1436640 | AT2G01060.2 | 48.148 | 108 | 45 | 2 | 60 | 167 | 1 | 97 | 4.63e-22 | 92.4 |
Msa1436640 | AT3G12730.2 | 38.889 | 126 | 59 | 4 | 57 | 173 | 1 | 117 | 4.77e-21 | 88.2 |
Msa1436640 | AT5G06800.3 | 54.688 | 64 | 29 | 0 | 25 | 88 | 192 | 255 | 6.76e-20 | 87.4 |
Msa1436640 | AT2G42660.1 | 69.811 | 53 | 16 | 0 | 26 | 78 | 51 | 103 | 2.90e-19 | 85.1 |
Msa1436640 | AT4G04605.1 | 55.556 | 63 | 28 | 0 | 16 | 78 | 5 | 67 | 6.07e-19 | 83.6 |
Msa1436640 | AT2G02060.2 | 51.765 | 85 | 37 | 1 | 1 | 81 | 1 | 85 | 8.45e-19 | 84.0 |
Msa1436640 | AT2G02060.1 | 51.765 | 85 | 37 | 1 | 1 | 81 | 1 | 85 | 8.45e-19 | 84.0 |
Msa1436640 | AT5G29000.4 | 53.623 | 69 | 32 | 0 | 25 | 93 | 231 | 299 | 1.88e-18 | 84.0 |
Msa1436640 | AT1G14600.1 | 56.000 | 75 | 31 | 1 | 6 | 78 | 2 | 76 | 2.71e-18 | 82.4 |
Msa1436640 | AT3G04450.3 | 56.897 | 58 | 25 | 0 | 25 | 82 | 238 | 295 | 4.69e-18 | 82.8 |
Msa1436640 | AT2G40260.1 | 57.812 | 64 | 27 | 0 | 15 | 78 | 72 | 135 | 4.95e-18 | 83.6 |
Msa1436640 | AT4G04580.1 | 46.250 | 80 | 38 | 1 | 14 | 93 | 3 | 77 | 3.27e-17 | 77.4 |
Msa1436640 | AT1G32240.2 | 69.811 | 53 | 16 | 0 | 26 | 78 | 214 | 266 | 4.55e-17 | 80.5 |
Msa1436640 | AT1G32240.1 | 69.811 | 53 | 16 | 0 | 26 | 78 | 214 | 266 | 5.78e-17 | 80.5 |
Msa1436640 | AT5G16560.1 | 67.925 | 53 | 17 | 0 | 26 | 78 | 220 | 272 | 7.48e-17 | 80.1 |
Msa1436640 | AT5G42630.2 | 66.038 | 53 | 18 | 0 | 26 | 78 | 106 | 158 | 8.74e-17 | 77.8 |
Msa1436640 | AT2G38300.1 | 61.404 | 57 | 22 | 0 | 22 | 78 | 51 | 107 | 1.44e-16 | 79.0 |
Msa1436640 | AT5G42630.1 | 66.038 | 53 | 18 | 0 | 26 | 78 | 106 | 158 | 2.12e-16 | 77.4 |
Msa1436640 | AT4G17695.1 | 66.038 | 53 | 18 | 0 | 26 | 78 | 165 | 217 | 3.58e-16 | 77.4 |
Msa1436640 | AT4G37180.1 | 55.932 | 59 | 24 | 1 | 27 | 85 | 212 | 268 | 3.11e-13 | 69.3 |
Msa1436640 | AT4G37180.2 | 55.932 | 59 | 24 | 1 | 27 | 85 | 219 | 275 | 3.15e-13 | 69.3 |
Msa1436640 | AT3G25790.1 | 39.286 | 112 | 51 | 4 | 30 | 128 | 201 | 308 | 4.23e-13 | 68.9 |
Msa1436640 | AT3G10760.1 | 51.351 | 74 | 31 | 3 | 6 | 79 | 90 | 158 | 7.70e-13 | 68.2 |
Msa1436640 | AT1G49560.1 | 44.330 | 97 | 49 | 2 | 25 | 121 | 192 | 283 | 1.59e-12 | 67.0 |
Msa1436640 | AT4G04555.1 | 46.032 | 63 | 34 | 0 | 16 | 78 | 5 | 67 | 1.82e-12 | 62.8 |
Msa1436640 | AT5G05090.1 | 56.364 | 55 | 23 | 1 | 25 | 79 | 81 | 134 | 2.46e-12 | 65.9 |
Msa1436640 | AT3G46640.2 | 54.545 | 55 | 24 | 1 | 25 | 79 | 144 | 197 | 5.20e-12 | 65.5 |
Msa1436640 | AT3G46640.1 | 54.545 | 55 | 24 | 1 | 25 | 79 | 144 | 197 | 5.20e-12 | 65.5 |
Msa1436640 | AT5G59570.2 | 54.545 | 55 | 24 | 1 | 25 | 79 | 141 | 194 | 5.26e-12 | 65.5 |
Msa1436640 | AT5G59570.1 | 54.545 | 55 | 24 | 1 | 25 | 79 | 141 | 194 | 5.26e-12 | 65.5 |
Msa1436640 | AT3G46640.3 | 54.545 | 55 | 24 | 1 | 25 | 79 | 144 | 197 | 5.80e-12 | 65.5 |
Msa1436640 | AT5G58080.1 | 56.364 | 55 | 23 | 1 | 25 | 79 | 194 | 247 | 6.22e-12 | 65.9 |
Msa1436640 | AT2G40970.1 | 56.364 | 55 | 23 | 1 | 25 | 79 | 105 | 158 | 9.29e-12 | 63.9 |
Msa1436640 | AT2G03500.1 | 54.098 | 61 | 26 | 1 | 25 | 85 | 233 | 291 | 2.26e-11 | 63.9 |
Msa1436640 | AT1G13300.1 | 50.820 | 61 | 28 | 1 | 25 | 85 | 181 | 239 | 3.42e-11 | 63.2 |
Msa1436640 | AT3G16857.3 | 52.727 | 55 | 25 | 1 | 25 | 79 | 167 | 220 | 3.78e-11 | 63.5 |
Msa1436640 | AT3G16857.2 | 52.727 | 55 | 25 | 1 | 25 | 79 | 237 | 290 | 4.20e-11 | 63.5 |
Msa1436640 | AT3G16857.1 | 52.727 | 55 | 25 | 1 | 25 | 79 | 237 | 290 | 4.39e-11 | 63.5 |
Msa1436640 | AT2G01760.3 | 52.727 | 55 | 25 | 1 | 25 | 79 | 135 | 188 | 6.46e-11 | 62.4 |
Find 74 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTGAGCATGATTCTTATTA+TGG | 0.152516 | tig0027985:-48631 | None:intergenic |
CTCAGCTTTGTCAAATTTCA+TGG | 0.192891 | tig0027985:+48559 | Msa1436640:CDS |
TGCCTTAGTGCTTCTCCTAT+TGG | 0.203121 | tig0027985:-47860 | None:intergenic |
ATTAACCTTAGAACAGATTT+AGG | 0.207865 | tig0027985:-46929 | None:intergenic |
TAAATCTGTTCTAAGGTTAA+TGG | 0.217308 | tig0027985:+46931 | Msa1436640:CDS |
GCCTTAGTGCTTCTCCTATT+GGG | 0.237177 | tig0027985:-47859 | None:intergenic |
CTAAGGTTAATGGGATTAAA+AGG | 0.242641 | tig0027985:+46941 | Msa1436640:CDS |
TGGAAGTTGAAGATAGAAAA+AGG | 0.252301 | tig0027985:+46384 | Msa1436640:five_prime_UTR |
GTCCACCTCAACCTCGGCTT+CGG | 0.264907 | tig0027985:-46486 | None:intergenic |
CAGCTAGACTTAAACATTAA+AGG | 0.275731 | tig0027985:+48728 | Msa1436640:CDS |
ATCAAATATGGTTTCATATA+GGG | 0.282950 | tig0027985:+48790 | Msa1436640:CDS |
AGAGGCTCAAGGGAAGTATT+TGG | 0.284186 | tig0027985:+48448 | Msa1436640:CDS |
TCATTTGAAGAGCCATTTAC+AGG | 0.303807 | tig0027985:+46976 | Msa1436640:CDS |
AATTTCAGTAACCATTCTTC+AGG | 0.305474 | tig0027985:+47573 | Msa1436640:CDS |
AAATCTGTTCTAAGGTTAAT+GGG | 0.321195 | tig0027985:+46932 | Msa1436640:CDS |
AGCTGAAATGGAATCAAATA+TGG | 0.349100 | tig0027985:+48778 | Msa1436640:CDS |
TTCAAATGAATCTCACTTGA+AGG | 0.353014 | tig0027985:-46352 | None:intergenic |
AATCAAATATGGTTTCATAT+AGG | 0.356297 | tig0027985:+48789 | Msa1436640:CDS |
GGAGGGAGAGGAGGAATTGA+AGG | 0.362824 | tig0027985:+46429 | Msa1436640:CDS |
ACTAGGGACAGAAGAAAATA+AGG | 0.364063 | tig0027985:+48673 | Msa1436640:CDS |
TAGAAGTTGTTACCTGTAAA+TGG | 0.368392 | tig0027985:-46988 | None:intergenic |
AATTGAAGTTCAAAAGAGAT+TGG | 0.388648 | tig0027985:+47886 | Msa1436640:CDS |
TAATGCATCAAAAGCTCAAC+TGG | 0.394563 | tig0027985:+48526 | Msa1436640:CDS |
ATGATGGAAAGTGGAGGGAG+AGG | 0.397519 | tig0027985:+46417 | Msa1436640:CDS |
CGACTCCTAAATCTGTTCTA+AGG | 0.397762 | tig0027985:+46924 | Msa1436640:CDS |
TCCACCTCAACCTCGGCTTC+GGG | 0.399137 | tig0027985:-46485 | None:intergenic |
TCAGGGACTAATACCAACTA+TGG | 0.403640 | tig0027985:+47591 | Msa1436640:CDS |
TTCTATCTTCAACTTCCAAA+TGG | 0.426561 | tig0027985:-46379 | None:intergenic |
TTCATTATCACCTCCATAGT+TGG | 0.436053 | tig0027985:-47604 | None:intergenic |
ATCTGTAGATGGAGCTGAAA+TGG | 0.439210 | tig0027985:+48766 | Msa1436640:CDS |
TGCTCTGTCCATCTTGAGAA+AGG | 0.439571 | tig0027985:-48499 | None:intergenic |
TTCAATTATCAAGAAGTACT+AGG | 0.442529 | tig0027985:+48656 | Msa1436640:CDS |
GGAGAAGGTATGATGGAAAG+TGG | 0.459223 | tig0027985:+46408 | Msa1436640:exon |
GGAGGAATTGAAGGGTATGA+TGG | 0.463626 | tig0027985:+46438 | Msa1436640:CDS |
GAACTAAAGCCTCAAGTTGA+AGG | 0.464648 | tig0027985:+48695 | Msa1436640:CDS |
TAAATTGCAAATGAGAATAG+AGG | 0.480939 | tig0027985:+48430 | Msa1436640:CDS |
AAAAGGAGGAGAAGGTATGA+TGG | 0.487029 | tig0027985:+46401 | Msa1436640:exon |
TGGTATTAGTCCCTGAAGAA+TGG | 0.487795 | tig0027985:-47584 | None:intergenic |
AACAAAGCGGTCGTGAAGAT+CGG | 0.492450 | tig0027985:-46511 | None:intergenic |
ATTCACAGAGAAATCCCAAT+AGG | 0.498124 | tig0027985:+47845 | Msa1436640:intron |
GTTGACGCTGTCACAAAGCT+TGG | 0.498295 | tig0027985:+46531 | Msa1436640:CDS |
ATTTCAGTAACCATTCTTCA+GGG | 0.498736 | tig0027985:+47574 | Msa1436640:CDS |
AATGAACTTGTATCTGTAGA+TGG | 0.501826 | tig0027985:+48755 | Msa1436640:CDS |
ATGGAAAGTGGAGGGAGAGG+AGG | 0.521924 | tig0027985:+46420 | Msa1436640:CDS |
ATGGTTACTGAAATTTACAT+AGG | 0.523278 | tig0027985:-47565 | None:intergenic |
AACTATGGAGGTGATAATGA+AGG | 0.530299 | tig0027985:+47606 | Msa1436640:CDS |
GATAGTAAAGAAAACATACT+AGG | 0.533466 | tig0027985:+48596 | Msa1436640:CDS |
GAGGGAGAGGAGGAATTGAA+GGG | 0.537312 | tig0027985:+46430 | Msa1436640:CDS |
ACCCGAAGCCGAGGTTGAGG+TGG | 0.538160 | tig0027985:+46484 | Msa1436640:CDS |
GAGACCCGAAGCCGAGGTTG+AGG | 0.538216 | tig0027985:+46481 | Msa1436640:CDS |
AACTAAAGCCTCAAGTTGAA+GGG | 0.540564 | tig0027985:+48696 | Msa1436640:CDS |
TCAATTATCAAGAAGTACTA+GGG | 0.553916 | tig0027985:+48657 | Msa1436640:CDS |
ACTAAAGCCTCAAGTTGAAG+GGG | 0.554788 | tig0027985:+48697 | Msa1436640:CDS |
TCCCAATAGGAGAAGCACTA+AGG | 0.559258 | tig0027985:+47858 | Msa1436640:CDS |
CAAACAAGCCTTTCTCAAGA+TGG | 0.560229 | tig0027985:+48491 | Msa1436640:CDS |
AAGGTATGATGGAAAGTGGA+GGG | 0.560716 | tig0027985:+46412 | Msa1436640:exon |
ACTATGGAGGTGATAATGAA+GGG | 0.578144 | tig0027985:+47607 | Msa1436640:CDS |
GGCTCAAGGGAAGTATTTGG+AGG | 0.583375 | tig0027985:+48451 | Msa1436640:CDS |
AACTTGCAGAAGTATAGACT+TGG | 0.584376 | tig0027985:+47289 | Msa1436640:intron |
GAAGGTATGATGGAAAGTGG+AGG | 0.584543 | tig0027985:+46411 | Msa1436640:exon |
GACGCTGTCACAAAGCTTGG+TGG | 0.598228 | tig0027985:+46534 | Msa1436640:CDS |
AAATGAGAATAGAGGCTCAA+GGG | 0.615268 | tig0027985:+48438 | Msa1436640:CDS |
CAAATGAGAATAGAGGCTCA+AGG | 0.629250 | tig0027985:+48437 | Msa1436640:CDS |
TGACGAGAGACCCGAAGCCG+AGG | 0.631016 | tig0027985:+46475 | Msa1436640:CDS |
AGAAGAGGTACATACTGTCA+GGG | 0.640171 | tig0027985:-46557 | None:intergenic |
CTATGGAGGTGATAATGAAG+GGG | 0.661113 | tig0027985:+47608 | Msa1436640:CDS |
GGGACTAATACCAACTATGG+AGG | 0.669862 | tig0027985:+47594 | Msa1436640:CDS |
CTAGACTTAAACATTAAAGG+TGG | 0.670077 | tig0027985:+48731 | Msa1436640:CDS |
ATGGAGGTGATAATGAAGGG+GGG | 0.671828 | tig0027985:+47610 | Msa1436640:CDS |
TATGGAGGTGATAATGAAGG+GGG | 0.676383 | tig0027985:+47609 | Msa1436640:CDS |
TCGGTTGTCCACCTCAACCT+CGG | 0.676640 | tig0027985:-46492 | None:intergenic |
GAGATTGGAAGAACAACTTG+AGG | 0.683401 | tig0027985:+47901 | Msa1436640:CDS |
TTGTGACAGCGTCAACAAAG+CGG | 0.705022 | tig0027985:-46524 | None:intergenic |
CTAAAGCCTCAAGTTGAAGG+GGG | 0.707595 | tig0027985:+48698 | Msa1436640:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TCTAAATATTTTCTTATTAA+TGG | + | tig0027985:46813-46832 | Msa1436640:intron | 10.0% |
!!! | ATTTTATTTTTTGACTAAAA+AGG | - | tig0027985:47017-47036 | None:intergenic | 10.0% |
!!! | ATGATATATTTAATTTATGA+AGG | + | tig0027985:47076-47095 | Msa1436640:intron | 10.0% |
!!! | AACACTAGAATTTTAAATAA+AGG | - | tig0027985:46686-46705 | None:intergenic | 15.0% |
!! | ATAAACTAGTAGTTAATAAT+AGG | + | tig0027985:47100-47119 | Msa1436640:intron | 15.0% |
!! | TATTATCATTAATTAGAGAA+TGG | + | tig0027985:47165-47184 | Msa1436640:intron | 15.0% |
!! | AATTAAAATGCTAATTACAT+AGG | - | tig0027985:47779-47798 | None:intergenic | 15.0% |
!!! | ATTCATTTGAATTTTCCATT+TGG | + | tig0027985:46364-46383 | Msa1436640:five_prime_UTR | 20.0% |
!!! | TTATTTTTTGACTAAAAAGG+TGG | - | tig0027985:47014-47033 | None:intergenic | 20.0% |
!! | TATATCATCACTATGTAAAA+AGG | - | tig0027985:47064-47083 | None:intergenic | 20.0% |
!!! | GCAATTATTTCTATTACATT+TGG | + | tig0027985:47508-47527 | Msa1436640:intron | 20.0% |
!!! | TTTTTGTCTTTCATCTTTTT+AGG | + | tig0027985:47537-47556 | Msa1436640:intron | 20.0% |
!! | AATCAAATATGGTTTCATAT+AGG | + | tig0027985:48789-48808 | Msa1436640:CDS | 20.0% |
!! | ATCAAATATGGTTTCATATA+GGG | + | tig0027985:48790-48809 | Msa1436640:CDS | 20.0% |
!! | ACATTCAAGTTAACTTGAAA+GGG | + | tig0027985:46712-46731 | Msa1436640:intron | 25.0% |
! | ATTAACCTTAGAACAGATTT+AGG | - | tig0027985:46932-46951 | None:intergenic | 25.0% |
!!! | TAAATCTGTTCTAAGGTTAA+TGG | + | tig0027985:46931-46950 | Msa1436640:CDS | 25.0% |
!!! | AAATCTGTTCTAAGGTTAAT+GGG | + | tig0027985:46932-46951 | Msa1436640:CDS | 25.0% |
! | ATGTAAAAAGGCAAAAGAAA+AGG | - | tig0027985:47052-47071 | None:intergenic | 25.0% |
! | ATGGTTACTGAAATTTACAT+AGG | - | tig0027985:47568-47587 | None:intergenic | 25.0% |
!!! | TTTTGAAAGAGATGAGAATT+TGG | - | tig0027985:47713-47732 | None:intergenic | 25.0% |
!!! | AGAAGTTTTAGATGAGAATT+TGG | - | tig0027985:47754-47773 | None:intergenic | 25.0% |
! | AATTGAAGTTCAAAAGAGAT+TGG | + | tig0027985:47886-47905 | Msa1436640:CDS | 25.0% |
! | TTCTCAATTGTCAATTACAT+AGG | - | tig0027985:48012-48031 | None:intergenic | 25.0% |
! | TAAGGATATATATACTCCTT+AGG | - | tig0027985:48243-48262 | None:intergenic | 25.0% |
! | TAAGGATATATATACTCCTT+AGG | - | tig0027985:48243-48262 | None:intergenic | 25.0% |
! | TAAATTGCAAATGAGAATAG+AGG | + | tig0027985:48430-48449 | Msa1436640:CDS | 25.0% |
! | GATAGTAAAGAAAACATACT+AGG | + | tig0027985:48596-48615 | Msa1436640:CDS | 25.0% |
!!! | TTCAATTATCAAGAAGTACT+AGG | + | tig0027985:48656-48675 | Msa1436640:CDS | 25.0% |
!!! | TCAATTATCAAGAAGTACTA+GGG | + | tig0027985:48657-48676 | Msa1436640:CDS | 25.0% |
TTCAAATGAATCTCACTTGA+AGG | - | tig0027985:46355-46374 | None:intergenic | 30.0% | |
TTCTATCTTCAACTTCCAAA+TGG | - | tig0027985:46382-46401 | None:intergenic | 30.0% | |
TGGAAGTTGAAGATAGAAAA+AGG | + | tig0027985:46384-46403 | Msa1436640:five_prime_UTR | 30.0% | |
AAGTTGAAGATAGAAAAAGG+AGG | + | tig0027985:46387-46406 | Msa1436640:five_prime_UTR | 30.0% | |
ACAAAACTAGATGAAAGAAG+AGG | - | tig0027985:46575-46594 | None:intergenic | 30.0% | |
! | CACATTCAAGTTAACTTGAA+AGG | + | tig0027985:46711-46730 | Msa1436640:intron | 30.0% |
!!! | AACTTGAAAGGGAAGTTTTT+TGG | + | tig0027985:46723-46742 | Msa1436640:intron | 30.0% |
TGGTTAGATTTGACATTGAA+AGG | + | tig0027985:46743-46762 | Msa1436640:intron | 30.0% | |
GAATCATAAGCTTTCACAAT+TGG | - | tig0027985:46795-46814 | None:intergenic | 30.0% | |
!! | TTGTTTGCTTTTGTGTTTAG+AGG | + | tig0027985:46901-46920 | Msa1436640:intron | 30.0% |
CTAAGGTTAATGGGATTAAA+AGG | + | tig0027985:46941-46960 | Msa1436640:CDS | 30.0% | |
TAGAAGTTGTTACCTGTAAA+TGG | - | tig0027985:46991-47010 | None:intergenic | 30.0% | |
AAAGAGTCTCAAATAAGTGA+AGG | + | tig0027985:47380-47399 | Msa1436640:intron | 30.0% | |
AAGAGTCTCAAATAAGTGAA+GGG | + | tig0027985:47381-47400 | Msa1436640:intron | 30.0% | |
AATTTCAGTAACCATTCTTC+AGG | + | tig0027985:47573-47592 | Msa1436640:CDS | 30.0% | |
ATTTCAGTAACCATTCTTCA+GGG | + | tig0027985:47574-47593 | Msa1436640:CDS | 30.0% | |
GAATTGTCGTTAAACTAGTT+AGG | - | tig0027985:47829-47848 | None:intergenic | 30.0% | |
! | GACTCACATACTAATTTTAG+TGG | - | tig0027985:48207-48226 | None:intergenic | 30.0% |
GTCTTATAATAAGAGACCTA+AGG | + | tig0027985:48224-48243 | Msa1436640:intron | 30.0% | |
GGTTAGAAATTCACTAGTTA+GGG | - | tig0027985:48267-48286 | None:intergenic | 30.0% | |
TGGTTAGAAATTCACTAGTT+AGG | - | tig0027985:48268-48287 | None:intergenic | 30.0% | |
CTAGTGAATTTCTAACCAAT+TGG | + | tig0027985:48270-48289 | Msa1436640:intron | 30.0% | |
CTAGAATTAAACAGTCCAAT+TGG | - | tig0027985:48288-48307 | None:intergenic | 30.0% | |
CAATTGGACTGTTTAATTCT+AGG | + | tig0027985:48286-48305 | Msa1436640:intron | 30.0% | |
GTCTTATAATAAGAGACCTA+AGG | + | tig0027985:48224-48243 | Msa1436640:intron | 30.0% | |
GGTTAGAAATTCACTAGTTA+GGG | - | tig0027985:48267-48286 | None:intergenic | 30.0% | |
TGGTTAGAAATTCACTAGTT+AGG | - | tig0027985:48268-48287 | None:intergenic | 30.0% | |
CTAGTGAATTTCTAACCAAT+TGG | + | tig0027985:48270-48289 | Msa1436640:intron | 30.0% | |
CTAGAATTAAACAGTCCAAT+TGG | - | tig0027985:48288-48307 | None:intergenic | 30.0% | |
CAATTGGACTGTTTAATTCT+AGG | + | tig0027985:48286-48305 | Msa1436640:intron | 30.0% | |
CTTGAGCATGATTCTTATTA+TGG | - | tig0027985:48634-48653 | None:intergenic | 30.0% | |
CAGCTAGACTTAAACATTAA+AGG | + | tig0027985:48728-48747 | Msa1436640:CDS | 30.0% | |
CTAGACTTAAACATTAAAGG+TGG | + | tig0027985:48731-48750 | Msa1436640:CDS | 30.0% | |
AATGAACTTGTATCTGTAGA+TGG | + | tig0027985:48755-48774 | Msa1436640:CDS | 30.0% | |
AGCTGAAATGGAATCAAATA+TGG | + | tig0027985:48778-48797 | Msa1436640:CDS | 30.0% | |
AAGATAGAAAAAGGAGGAGA+AGG | + | tig0027985:46393-46412 | Msa1436640:five_prime_UTR | 35.0% | |
TCATTTGAAGAGCCATTTAC+AGG | + | tig0027985:46976-46995 | Msa1436640:CDS | 35.0% | |
TAGAGAATGGTGCACTTTAA+AGG | + | tig0027985:47178-47197 | Msa1436640:intron | 35.0% | |
AGAGAATGGTGCACTTTAAA+GGG | + | tig0027985:47179-47198 | Msa1436640:intron | 35.0% | |
! | AACTTGCAGAAGTATAGACT+TGG | + | tig0027985:47289-47308 | Msa1436640:intron | 35.0% |
TTCATTATCACCTCCATAGT+TGG | - | tig0027985:47607-47626 | None:intergenic | 35.0% | |
! | AACTATGGAGGTGATAATGA+AGG | + | tig0027985:47606-47625 | Msa1436640:CDS | 35.0% |
! | ACTATGGAGGTGATAATGAA+GGG | + | tig0027985:47607-47626 | Msa1436640:CDS | 35.0% |
ATTCACAGAGAAATCCCAAT+AGG | + | tig0027985:47845-47864 | Msa1436640:intron | 35.0% | |
TCTAGAAGAGTCCTATTGTA+TGG | - | tig0027985:48125-48144 | None:intergenic | 35.0% | |
AAATTCACTAGTTAGGGCTA+AGG | - | tig0027985:48261-48280 | None:intergenic | 35.0% | |
AAATTCACTAGTTAGGGCTA+AGG | - | tig0027985:48261-48280 | None:intergenic | 35.0% | |
AAATGAGAATAGAGGCTCAA+GGG | + | tig0027985:48438-48457 | Msa1436640:CDS | 35.0% | |
TAATGCATCAAAAGCTCAAC+TGG | + | tig0027985:48526-48545 | Msa1436640:CDS | 35.0% | |
! | CTCAGCTTTGTCAAATTTCA+TGG | + | tig0027985:48559-48578 | Msa1436640:CDS | 35.0% |
ACTAGGGACAGAAGAAAATA+AGG | + | tig0027985:48673-48692 | Msa1436640:CDS | 35.0% | |
!! | AACTAAAGCCTCAAGTTGAA+GGG | + | tig0027985:48696-48715 | Msa1436640:CDS | 35.0% |
! | AAAAGGAGGAGAAGGTATGA+TGG | + | tig0027985:46401-46420 | Msa1436640:exon | 40.0% |
! | AAGGTATGATGGAAAGTGGA+GGG | + | tig0027985:46412-46431 | Msa1436640:exon | 40.0% |
! | AGAAGAGGTACATACTGTCA+GGG | - | tig0027985:46560-46579 | None:intergenic | 40.0% |
! | AAGAAGAGGTACATACTGTC+AGG | - | tig0027985:46561-46580 | None:intergenic | 40.0% |
! | GACATTGAAAGGAAGTGTGA+TGG | + | tig0027985:46754-46773 | Msa1436640:intron | 40.0% |
! | AGGAAGTGTGATGGAGAATT+TGG | + | tig0027985:46763-46782 | Msa1436640:intron | 40.0% |
! | GGAAGTGTGATGGAGAATTT+GGG | + | tig0027985:46764-46783 | Msa1436640:intron | 40.0% |
! | GAAGTGTGATGGAGAATTTG+GGG | + | tig0027985:46765-46784 | Msa1436640:intron | 40.0% |
CGACTCCTAAATCTGTTCTA+AGG | + | tig0027985:46924-46943 | Msa1436640:CDS | 40.0% | |
TGGTATTAGTCCCTGAAGAA+TGG | - | tig0027985:47587-47606 | None:intergenic | 40.0% | |
TCAGGGACTAATACCAACTA+TGG | + | tig0027985:47591-47610 | Msa1436640:CDS | 40.0% | |
! | CTATGGAGGTGATAATGAAG+GGG | + | tig0027985:47608-47627 | Msa1436640:CDS | 40.0% |
! | TATGGAGGTGATAATGAAGG+GGG | + | tig0027985:47609-47628 | Msa1436640:CDS | 40.0% |
GAGATTGGAAGAACAACTTG+AGG | + | tig0027985:47901-47920 | Msa1436640:CDS | 40.0% | |
TGCCTATAATGTATCATGCC+CGG | + | tig0027985:48078-48097 | Msa1436640:intron | 40.0% | |
CAAATGAGAATAGAGGCTCA+AGG | + | tig0027985:48437-48456 | Msa1436640:CDS | 40.0% | |
CAAACAAGCCTTTCTCAAGA+TGG | + | tig0027985:48491-48510 | Msa1436640:CDS | 40.0% | |
!! | GAACTAAAGCCTCAAGTTGA+AGG | + | tig0027985:48695-48714 | Msa1436640:CDS | 40.0% |
!! | ACTAAAGCCTCAAGTTGAAG+GGG | + | tig0027985:48697-48716 | Msa1436640:CDS | 40.0% |
ATCTGTAGATGGAGCTGAAA+TGG | + | tig0027985:48766-48785 | Msa1436640:CDS | 40.0% | |
! | GGAGAAGGTATGATGGAAAG+TGG | + | tig0027985:46408-46427 | Msa1436640:exon | 45.0% |
! | GAAGGTATGATGGAAAGTGG+AGG | + | tig0027985:46411-46430 | Msa1436640:exon | 45.0% |
! | GGAGGAATTGAAGGGTATGA+TGG | + | tig0027985:46438-46457 | Msa1436640:CDS | 45.0% |
AACAAAGCGGTCGTGAAGAT+CGG | - | tig0027985:46514-46533 | None:intergenic | 45.0% | |
TTGTGACAGCGTCAACAAAG+CGG | - | tig0027985:46527-46546 | None:intergenic | 45.0% | |
GGGACTAATACCAACTATGG+AGG | + | tig0027985:47594-47613 | Msa1436640:CDS | 45.0% | |
! | ATGGAGGTGATAATGAAGGG+GGG | + | tig0027985:47610-47629 | Msa1436640:CDS | 45.0% |
!! | TCCCAATAGGAGAAGCACTA+AGG | + | tig0027985:47858-47877 | Msa1436640:CDS | 45.0% |
GCCTTAGTGCTTCTCCTATT+GGG | - | tig0027985:47862-47881 | None:intergenic | 45.0% | |
TGCCTTAGTGCTTCTCCTAT+TGG | - | tig0027985:47863-47882 | None:intergenic | 45.0% | |
GACCGGGCATGATACATTAT+AGG | - | tig0027985:48083-48102 | None:intergenic | 45.0% | |
TGTCCTTCGCACCATACAAT+AGG | + | tig0027985:48111-48130 | Msa1436640:intron | 45.0% | |
AGTCCTATTGTATGGTGCGA+AGG | - | tig0027985:48117-48136 | None:intergenic | 45.0% | |
!! | AGAGGCTCAAGGGAAGTATT+TGG | + | tig0027985:48448-48467 | Msa1436640:CDS | 45.0% |
TGCTCTGTCCATCTTGAGAA+AGG | - | tig0027985:48502-48521 | None:intergenic | 45.0% | |
!! | CTAAAGCCTCAAGTTGAAGG+GGG | + | tig0027985:48698-48717 | Msa1436640:CDS | 45.0% |
! | ATGATGGAAAGTGGAGGGAG+AGG | + | tig0027985:46417-46436 | Msa1436640:CDS | 50.0% |
GAGGGAGAGGAGGAATTGAA+GGG | + | tig0027985:46430-46449 | Msa1436640:CDS | 50.0% | |
GTTGACGCTGTCACAAAGCT+TGG | + | tig0027985:46531-46550 | Msa1436640:CDS | 50.0% | |
!! | GGCTCAAGGGAAGTATTTGG+AGG | + | tig0027985:48451-48470 | Msa1436640:CDS | 50.0% |
ATTGCACCCCCTTCAACTTG+AGG | - | tig0027985:48707-48726 | None:intergenic | 50.0% | |
ATGGAAAGTGGAGGGAGAGG+AGG | + | tig0027985:46420-46439 | Msa1436640:CDS | 55.0% | |
GGAGGGAGAGGAGGAATTGA+AGG | + | tig0027985:46429-46448 | Msa1436640:CDS | 55.0% | |
TCGGTTGTCCACCTCAACCT+CGG | - | tig0027985:46495-46514 | None:intergenic | 55.0% | |
GACGCTGTCACAAAGCTTGG+TGG | + | tig0027985:46534-46553 | Msa1436640:CDS | 55.0% | |
GAAGGACACAACGAACGACC+GGG | - | tig0027985:48099-48118 | None:intergenic | 55.0% | |
CGAAGGACACAACGAACGAC+CGG | - | tig0027985:48100-48119 | None:intergenic | 55.0% | |
TCCACCTCAACCTCGGCTTC+GGG | - | tig0027985:46488-46507 | None:intergenic | 60.0% | |
GTCCACCTCAACCTCGGCTT+CGG | - | tig0027985:46489-46508 | None:intergenic | 60.0% | |
TGACGAGAGACCCGAAGCCG+AGG | + | tig0027985:46475-46494 | Msa1436640:CDS | 65.0% | |
GAGACCCGAAGCCGAGGTTG+AGG | + | tig0027985:46481-46500 | Msa1436640:CDS | 65.0% | |
ACCCGAAGCCGAGGTTGAGG+TGG | + | tig0027985:46484-46503 | Msa1436640:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0027985 | gene | 46352 | 48826 | 46352 | ID=Msa1436640;Name=Msa1436640 |
tig0027985 | mRNA | 46352 | 48826 | 46352 | ID=Msa1436640-mRNA-1;Parent=Msa1436640;Name=Msa1436640-mRNA-1;_AED=0.02;_eAED=0.02;_QI=65|0.2|0.16|1|1|1|6|0|277 |
tig0027985 | exon | 46352 | 46564 | 46352 | ID=Msa1436640-mRNA-1:exon:10302;Parent=Msa1436640-mRNA-1 |
tig0027985 | exon | 46921 | 46997 | 46921 | ID=Msa1436640-mRNA-1:exon:10303;Parent=Msa1436640-mRNA-1 |
tig0027985 | exon | 47298 | 47358 | 47298 | ID=Msa1436640-mRNA-1:exon:10304;Parent=Msa1436640-mRNA-1 |
tig0027985 | exon | 47559 | 47631 | 47559 | ID=Msa1436640-mRNA-1:exon:10305;Parent=Msa1436640-mRNA-1 |
tig0027985 | exon | 47853 | 47922 | 47853 | ID=Msa1436640-mRNA-1:exon:10306;Parent=Msa1436640-mRNA-1 |
tig0027985 | exon | 48422 | 48826 | 48422 | ID=Msa1436640-mRNA-1:exon:10307;Parent=Msa1436640-mRNA-1 |
tig0027985 | five_prime_UTR | 46352 | 46416 | 46352 | ID=Msa1436640-mRNA-1:five_prime_utr;Parent=Msa1436640-mRNA-1 |
tig0027985 | CDS | 46417 | 46564 | 46417 | ID=Msa1436640-mRNA-1:cds;Parent=Msa1436640-mRNA-1 |
tig0027985 | CDS | 46921 | 46997 | 46921 | ID=Msa1436640-mRNA-1:cds;Parent=Msa1436640-mRNA-1 |
tig0027985 | CDS | 47298 | 47358 | 47298 | ID=Msa1436640-mRNA-1:cds;Parent=Msa1436640-mRNA-1 |
tig0027985 | CDS | 47559 | 47631 | 47559 | ID=Msa1436640-mRNA-1:cds;Parent=Msa1436640-mRNA-1 |
tig0027985 | CDS | 47853 | 47922 | 47853 | ID=Msa1436640-mRNA-1:cds;Parent=Msa1436640-mRNA-1 |
tig0027985 | CDS | 48422 | 48826 | 48422 | ID=Msa1436640-mRNA-1:cds;Parent=Msa1436640-mRNA-1 |
Gene Sequence |
Protein sequence |