AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1436640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1436640 MtrunA17_Chr5g0409731 94.182 275 15 1 1 274 1 275 0.0 533
Msa1436640 MtrunA17_Chr8g0356501 46.860 207 86 6 1 195 13 207 1.04e-52 175
Msa1436640 MtrunA17_Chr2g0321461 51.075 186 81 4 18 193 38 223 1.07e-50 171
Msa1436640 MtrunA17_Chr6g0461641 50.777 193 85 4 18 204 35 223 7.52e-50 169
Msa1436640 MtrunA17_Chr2g0310011 49.718 177 74 4 10 184 22 185 8.44e-49 165
Msa1436640 MtrunA17_Chr7g0254981 55.245 143 55 2 25 167 50 183 2.56e-47 159
Msa1436640 MtrunA17_Chr4g0042451 51.592 157 69 3 18 171 10 162 7.13e-46 157
Msa1436640 MtrunA17_Chr2g0291021 39.526 253 127 5 25 270 49 282 1.40e-44 153
Msa1436640 MtrunA17_Chr5g0417521 51.282 156 70 4 19 171 9 161 3.23e-44 153
Msa1436640 MtrunA17_Chr2g0290991 50.588 170 74 5 7 171 20 184 2.04e-43 150
Msa1436640 MtrunA17_Chr1g0197171 51.923 156 67 4 18 171 37 186 2.98e-43 149
Msa1436640 MtrunA17_Chr7g0274471 46.012 163 76 3 25 187 218 368 3.64e-36 134
Msa1436640 MtrunA17_Chr7g0261911 49.645 141 59 2 25 165 262 390 5.12e-36 134
Msa1436640 MtrunA17_Chr1g0190301 46.622 148 67 3 18 165 168 303 5.05e-34 127
Msa1436640 MtrunA17_Chr1g0175091 44.755 143 65 2 25 167 258 386 1.11e-33 127
Msa1436640 MtrunA17_Chr7g0258551 41.497 147 73 4 25 171 212 345 2.35e-30 117
Msa1436640 MtrunA17_Chr7g0242521 38.732 142 69 3 25 162 13 140 2.75e-25 100
Msa1436640 MtrunA17_Chr1g0175071 34.286 175 91 4 12 178 159 317 1.84e-20 89.4
Msa1436640 MtrunA17_Chr1g0175081 46.377 69 37 0 27 95 24 92 5.10e-19 80.1
Msa1436640 MtrunA17_Chr1g0210911 47.059 102 42 3 1 97 1 95 1.17e-18 84.3
Msa1436640 MtrunA17_Chr7g0243081 62.069 58 22 0 21 78 67 124 1.92e-18 84.0
Msa1436640 MtrunA17_Chr1g0162931 58.209 67 28 0 12 78 5 71 2.61e-18 82.4
Msa1436640 MtrunA17_Chr6g0479431 61.667 60 23 0 26 85 203 262 1.22e-17 81.6
Msa1436640 MtrunA17_Chr8g0366281 69.811 53 16 0 26 78 174 226 1.70e-17 81.3
Msa1436640 MtrunA17_Chr2g0288601 70.000 50 15 0 26 75 72 121 1.75e-17 77.0
Msa1436640 MtrunA17_Chr5g0410741 69.811 53 16 0 26 78 220 272 5.61e-17 80.1
Msa1436640 MtrunA17_Chr1g0154261 67.925 53 17 0 26 78 127 179 5.96e-17 79.0
Msa1436640 MtrunA17_Chr8g0379121 51.389 72 28 1 7 78 100 164 8.78e-17 79.7
Msa1436640 MtrunA17_Chr2g0320231 51.316 76 31 1 3 78 81 150 9.26e-17 79.3
Msa1436640 MtrunA17_Chr3g0095611 48.611 72 30 1 7 78 8 72 1.49e-16 76.3
Msa1436640 MtrunA17_Chr3g0109981 67.925 53 17 0 26 78 275 327 1.52e-16 79.0
Msa1436640 MtrunA17_Chr7g0258531 36.913 149 72 5 25 168 213 344 7.28e-16 76.6
Msa1436640 MtrunA17_Chr2g0283951 48.611 72 37 0 4 75 68 139 2.91e-14 72.0
Msa1436640 MtrunA17_Chr7g0275401 40.000 90 43 3 25 114 192 270 4.36e-12 65.1
Msa1436640 MtrunA17_Chr7g0255711 56.364 55 23 1 25 79 91 144 4.69e-12 65.1
Msa1436640 MtrunA17_Chr4g0067981 56.364 55 23 1 25 79 215 268 5.71e-12 65.9
Msa1436640 MtrunA17_Chr4g0062921 54.098 61 26 1 25 85 235 293 5.77e-12 65.5
Msa1436640 MtrunA17_Chr5g0402631 45.946 74 38 1 25 98 214 285 6.11e-12 65.1
Msa1436640 MtrunA17_Chr2g0304841 52.727 55 25 1 25 79 213 266 6.24e-12 65.5
Msa1436640 MtrunA17_Chr1g0198601 50.820 61 28 1 25 85 211 269 7.56e-12 65.1
Msa1436640 MtrunA17_Chr4g0031961 54.545 55 24 1 25 79 131 184 1.05e-11 64.3
Msa1436640 MtrunA17_Chr1g0161431 52.727 55 25 1 25 79 200 253 1.33e-11 64.7
Msa1436640 MtrunA17_Chr4g0045361 54.098 61 26 1 25 85 274 332 1.42e-11 64.3
Msa1436640 MtrunA17_Chr4g0009901 46.154 65 32 2 25 89 168 229 1.99e-11 63.2
Msa1436640 MtrunA17_Chr1g0149841 54.237 59 26 1 21 79 187 244 2.19e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1436640 AT5G45580.2 50.174 287 121 11 2 274 1 279 5.92e-76 233
Msa1436640 AT5G45580.1 50.929 269 111 10 20 274 2 263 4.72e-74 227
Msa1436640 AT3G24120.1 52.747 182 82 3 16 194 32 212 2.53e-58 188
Msa1436640 AT4G13640.1 50.286 175 85 1 16 188 28 202 1.46e-57 186
Msa1436640 AT3G24120.2 51.892 185 82 4 16 194 32 215 3.92e-56 182
Msa1436640 AT4G13640.2 49.438 178 85 2 16 188 28 205 2.23e-55 181
Msa1436640 AT3G04030.3 48.241 199 82 4 7 193 29 218 1.71e-51 173
Msa1436640 AT5G18240.1 48.205 195 88 4 7 193 29 218 5.02e-51 172
Msa1436640 AT5G18240.4 48.205 195 88 4 7 193 29 218 5.02e-51 172
Msa1436640 AT1G79430.2 51.829 164 64 4 10 171 21 171 1.32e-48 165
Msa1436640 AT3G04030.2 47.236 199 83 5 7 193 29 217 2.04e-48 165
Msa1436640 AT3G12730.1 47.273 165 69 4 18 173 16 171 9.40e-48 159
Msa1436640 AT5G18240.5 47.179 195 88 5 7 193 29 216 1.45e-47 163
Msa1436640 AT3G04030.1 46.231 199 80 5 7 193 29 212 1.16e-46 160
Msa1436640 AT5G18240.2 46.154 195 86 5 7 193 29 212 6.24e-46 159
Msa1436640 AT5G18240.3 46.154 195 86 5 7 193 29 212 6.24e-46 159
Msa1436640 AT1G69580.1 49.398 166 79 2 18 178 27 192 1.21e-45 157
Msa1436640 AT1G69580.2 48.503 167 80 2 18 178 27 193 5.97e-45 155
Msa1436640 AT2G01060.1 54.545 143 54 2 25 167 15 146 1.18e-43 150
Msa1436640 AT3G13040.3 46.250 160 76 2 25 181 241 393 7.09e-38 139
Msa1436640 AT3G13040.1 46.250 160 76 2 25 181 241 393 7.09e-38 139
Msa1436640 AT3G13040.2 46.250 160 76 2 25 181 241 393 7.09e-38 139
Msa1436640 AT4G28610.1 45.000 160 76 3 25 184 225 372 1.15e-34 129
Msa1436640 AT5G06800.1 45.455 143 65 3 25 167 192 321 4.88e-33 124
Msa1436640 AT5G06800.2 44.056 143 72 3 25 167 192 326 9.86e-33 124
Msa1436640 AT5G29000.1 44.828 145 67 2 25 167 188 321 2.63e-32 122
Msa1436640 AT5G29000.3 44.828 145 67 2 25 167 188 321 2.63e-32 122
Msa1436640 AT3G04450.4 44.521 146 66 2 25 167 198 331 3.92e-32 122
Msa1436640 AT3G04450.2 44.521 146 66 2 25 167 198 331 3.92e-32 122
Msa1436640 AT5G29000.2 44.828 145 67 2 25 167 231 364 4.84e-32 122
Msa1436640 AT3G04450.1 44.521 146 66 2 25 167 238 371 5.33e-32 122
Msa1436640 AT5G45580.3 39.815 216 109 10 73 274 16 224 5.37e-31 115
Msa1436640 AT3G04030.5 46.309 149 61 3 57 193 1 142 8.23e-29 112
Msa1436640 AT2G20400.2 43.885 139 67 2 27 165 233 360 2.23e-27 109
Msa1436640 AT2G20400.1 43.165 139 67 2 27 165 233 359 1.13e-26 107
Msa1436640 AT5G18240.6 42.759 145 66 4 57 193 1 136 2.78e-24 100
Msa1436640 AT3G04030.4 43.624 149 59 4 57 193 1 136 4.49e-24 99.4
Msa1436640 AT2G06020.1 46.296 108 38 3 21 113 82 184 5.08e-23 96.3
Msa1436640 AT1G79430.1 47.009 117 49 3 57 171 1 106 1.29e-22 95.1
Msa1436640 AT2G01060.2 48.148 108 45 2 60 167 1 97 4.63e-22 92.4
Msa1436640 AT3G12730.2 38.889 126 59 4 57 173 1 117 4.77e-21 88.2
Msa1436640 AT5G06800.3 54.688 64 29 0 25 88 192 255 6.76e-20 87.4
Msa1436640 AT2G42660.1 69.811 53 16 0 26 78 51 103 2.90e-19 85.1
Msa1436640 AT4G04605.1 55.556 63 28 0 16 78 5 67 6.07e-19 83.6
Msa1436640 AT2G02060.2 51.765 85 37 1 1 81 1 85 8.45e-19 84.0
Msa1436640 AT2G02060.1 51.765 85 37 1 1 81 1 85 8.45e-19 84.0
Msa1436640 AT5G29000.4 53.623 69 32 0 25 93 231 299 1.88e-18 84.0
Msa1436640 AT1G14600.1 56.000 75 31 1 6 78 2 76 2.71e-18 82.4
Msa1436640 AT3G04450.3 56.897 58 25 0 25 82 238 295 4.69e-18 82.8
Msa1436640 AT2G40260.1 57.812 64 27 0 15 78 72 135 4.95e-18 83.6
Msa1436640 AT4G04580.1 46.250 80 38 1 14 93 3 77 3.27e-17 77.4
Msa1436640 AT1G32240.2 69.811 53 16 0 26 78 214 266 4.55e-17 80.5
Msa1436640 AT1G32240.1 69.811 53 16 0 26 78 214 266 5.78e-17 80.5
Msa1436640 AT5G16560.1 67.925 53 17 0 26 78 220 272 7.48e-17 80.1
Msa1436640 AT5G42630.2 66.038 53 18 0 26 78 106 158 8.74e-17 77.8
Msa1436640 AT2G38300.1 61.404 57 22 0 22 78 51 107 1.44e-16 79.0
Msa1436640 AT5G42630.1 66.038 53 18 0 26 78 106 158 2.12e-16 77.4
Msa1436640 AT4G17695.1 66.038 53 18 0 26 78 165 217 3.58e-16 77.4
Msa1436640 AT4G37180.1 55.932 59 24 1 27 85 212 268 3.11e-13 69.3
Msa1436640 AT4G37180.2 55.932 59 24 1 27 85 219 275 3.15e-13 69.3
Msa1436640 AT3G25790.1 39.286 112 51 4 30 128 201 308 4.23e-13 68.9
Msa1436640 AT3G10760.1 51.351 74 31 3 6 79 90 158 7.70e-13 68.2
Msa1436640 AT1G49560.1 44.330 97 49 2 25 121 192 283 1.59e-12 67.0
Msa1436640 AT4G04555.1 46.032 63 34 0 16 78 5 67 1.82e-12 62.8
Msa1436640 AT5G05090.1 56.364 55 23 1 25 79 81 134 2.46e-12 65.9
Msa1436640 AT3G46640.2 54.545 55 24 1 25 79 144 197 5.20e-12 65.5
Msa1436640 AT3G46640.1 54.545 55 24 1 25 79 144 197 5.20e-12 65.5
Msa1436640 AT5G59570.2 54.545 55 24 1 25 79 141 194 5.26e-12 65.5
Msa1436640 AT5G59570.1 54.545 55 24 1 25 79 141 194 5.26e-12 65.5
Msa1436640 AT3G46640.3 54.545 55 24 1 25 79 144 197 5.80e-12 65.5
Msa1436640 AT5G58080.1 56.364 55 23 1 25 79 194 247 6.22e-12 65.9
Msa1436640 AT2G40970.1 56.364 55 23 1 25 79 105 158 9.29e-12 63.9
Msa1436640 AT2G03500.1 54.098 61 26 1 25 85 233 291 2.26e-11 63.9
Msa1436640 AT1G13300.1 50.820 61 28 1 25 85 181 239 3.42e-11 63.2
Msa1436640 AT3G16857.3 52.727 55 25 1 25 79 167 220 3.78e-11 63.5
Msa1436640 AT3G16857.2 52.727 55 25 1 25 79 237 290 4.20e-11 63.5
Msa1436640 AT3G16857.1 52.727 55 25 1 25 79 237 290 4.39e-11 63.5
Msa1436640 AT2G01760.3 52.727 55 25 1 25 79 135 188 6.46e-11 62.4

Find 74 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAGCATGATTCTTATTA+TGG 0.152516 tig0027985:-48631 None:intergenic
CTCAGCTTTGTCAAATTTCA+TGG 0.192891 tig0027985:+48559 Msa1436640:CDS
TGCCTTAGTGCTTCTCCTAT+TGG 0.203121 tig0027985:-47860 None:intergenic
ATTAACCTTAGAACAGATTT+AGG 0.207865 tig0027985:-46929 None:intergenic
TAAATCTGTTCTAAGGTTAA+TGG 0.217308 tig0027985:+46931 Msa1436640:CDS
GCCTTAGTGCTTCTCCTATT+GGG 0.237177 tig0027985:-47859 None:intergenic
CTAAGGTTAATGGGATTAAA+AGG 0.242641 tig0027985:+46941 Msa1436640:CDS
TGGAAGTTGAAGATAGAAAA+AGG 0.252301 tig0027985:+46384 Msa1436640:five_prime_UTR
GTCCACCTCAACCTCGGCTT+CGG 0.264907 tig0027985:-46486 None:intergenic
CAGCTAGACTTAAACATTAA+AGG 0.275731 tig0027985:+48728 Msa1436640:CDS
ATCAAATATGGTTTCATATA+GGG 0.282950 tig0027985:+48790 Msa1436640:CDS
AGAGGCTCAAGGGAAGTATT+TGG 0.284186 tig0027985:+48448 Msa1436640:CDS
TCATTTGAAGAGCCATTTAC+AGG 0.303807 tig0027985:+46976 Msa1436640:CDS
AATTTCAGTAACCATTCTTC+AGG 0.305474 tig0027985:+47573 Msa1436640:CDS
AAATCTGTTCTAAGGTTAAT+GGG 0.321195 tig0027985:+46932 Msa1436640:CDS
AGCTGAAATGGAATCAAATA+TGG 0.349100 tig0027985:+48778 Msa1436640:CDS
TTCAAATGAATCTCACTTGA+AGG 0.353014 tig0027985:-46352 None:intergenic
AATCAAATATGGTTTCATAT+AGG 0.356297 tig0027985:+48789 Msa1436640:CDS
GGAGGGAGAGGAGGAATTGA+AGG 0.362824 tig0027985:+46429 Msa1436640:CDS
ACTAGGGACAGAAGAAAATA+AGG 0.364063 tig0027985:+48673 Msa1436640:CDS
TAGAAGTTGTTACCTGTAAA+TGG 0.368392 tig0027985:-46988 None:intergenic
AATTGAAGTTCAAAAGAGAT+TGG 0.388648 tig0027985:+47886 Msa1436640:CDS
TAATGCATCAAAAGCTCAAC+TGG 0.394563 tig0027985:+48526 Msa1436640:CDS
ATGATGGAAAGTGGAGGGAG+AGG 0.397519 tig0027985:+46417 Msa1436640:CDS
CGACTCCTAAATCTGTTCTA+AGG 0.397762 tig0027985:+46924 Msa1436640:CDS
TCCACCTCAACCTCGGCTTC+GGG 0.399137 tig0027985:-46485 None:intergenic
TCAGGGACTAATACCAACTA+TGG 0.403640 tig0027985:+47591 Msa1436640:CDS
TTCTATCTTCAACTTCCAAA+TGG 0.426561 tig0027985:-46379 None:intergenic
TTCATTATCACCTCCATAGT+TGG 0.436053 tig0027985:-47604 None:intergenic
ATCTGTAGATGGAGCTGAAA+TGG 0.439210 tig0027985:+48766 Msa1436640:CDS
TGCTCTGTCCATCTTGAGAA+AGG 0.439571 tig0027985:-48499 None:intergenic
TTCAATTATCAAGAAGTACT+AGG 0.442529 tig0027985:+48656 Msa1436640:CDS
GGAGAAGGTATGATGGAAAG+TGG 0.459223 tig0027985:+46408 Msa1436640:exon
GGAGGAATTGAAGGGTATGA+TGG 0.463626 tig0027985:+46438 Msa1436640:CDS
GAACTAAAGCCTCAAGTTGA+AGG 0.464648 tig0027985:+48695 Msa1436640:CDS
TAAATTGCAAATGAGAATAG+AGG 0.480939 tig0027985:+48430 Msa1436640:CDS
AAAAGGAGGAGAAGGTATGA+TGG 0.487029 tig0027985:+46401 Msa1436640:exon
TGGTATTAGTCCCTGAAGAA+TGG 0.487795 tig0027985:-47584 None:intergenic
AACAAAGCGGTCGTGAAGAT+CGG 0.492450 tig0027985:-46511 None:intergenic
ATTCACAGAGAAATCCCAAT+AGG 0.498124 tig0027985:+47845 Msa1436640:intron
GTTGACGCTGTCACAAAGCT+TGG 0.498295 tig0027985:+46531 Msa1436640:CDS
ATTTCAGTAACCATTCTTCA+GGG 0.498736 tig0027985:+47574 Msa1436640:CDS
AATGAACTTGTATCTGTAGA+TGG 0.501826 tig0027985:+48755 Msa1436640:CDS
ATGGAAAGTGGAGGGAGAGG+AGG 0.521924 tig0027985:+46420 Msa1436640:CDS
ATGGTTACTGAAATTTACAT+AGG 0.523278 tig0027985:-47565 None:intergenic
AACTATGGAGGTGATAATGA+AGG 0.530299 tig0027985:+47606 Msa1436640:CDS
GATAGTAAAGAAAACATACT+AGG 0.533466 tig0027985:+48596 Msa1436640:CDS
GAGGGAGAGGAGGAATTGAA+GGG 0.537312 tig0027985:+46430 Msa1436640:CDS
ACCCGAAGCCGAGGTTGAGG+TGG 0.538160 tig0027985:+46484 Msa1436640:CDS
GAGACCCGAAGCCGAGGTTG+AGG 0.538216 tig0027985:+46481 Msa1436640:CDS
AACTAAAGCCTCAAGTTGAA+GGG 0.540564 tig0027985:+48696 Msa1436640:CDS
TCAATTATCAAGAAGTACTA+GGG 0.553916 tig0027985:+48657 Msa1436640:CDS
ACTAAAGCCTCAAGTTGAAG+GGG 0.554788 tig0027985:+48697 Msa1436640:CDS
TCCCAATAGGAGAAGCACTA+AGG 0.559258 tig0027985:+47858 Msa1436640:CDS
CAAACAAGCCTTTCTCAAGA+TGG 0.560229 tig0027985:+48491 Msa1436640:CDS
AAGGTATGATGGAAAGTGGA+GGG 0.560716 tig0027985:+46412 Msa1436640:exon
ACTATGGAGGTGATAATGAA+GGG 0.578144 tig0027985:+47607 Msa1436640:CDS
GGCTCAAGGGAAGTATTTGG+AGG 0.583375 tig0027985:+48451 Msa1436640:CDS
AACTTGCAGAAGTATAGACT+TGG 0.584376 tig0027985:+47289 Msa1436640:intron
GAAGGTATGATGGAAAGTGG+AGG 0.584543 tig0027985:+46411 Msa1436640:exon
GACGCTGTCACAAAGCTTGG+TGG 0.598228 tig0027985:+46534 Msa1436640:CDS
AAATGAGAATAGAGGCTCAA+GGG 0.615268 tig0027985:+48438 Msa1436640:CDS
CAAATGAGAATAGAGGCTCA+AGG 0.629250 tig0027985:+48437 Msa1436640:CDS
TGACGAGAGACCCGAAGCCG+AGG 0.631016 tig0027985:+46475 Msa1436640:CDS
AGAAGAGGTACATACTGTCA+GGG 0.640171 tig0027985:-46557 None:intergenic
CTATGGAGGTGATAATGAAG+GGG 0.661113 tig0027985:+47608 Msa1436640:CDS
GGGACTAATACCAACTATGG+AGG 0.669862 tig0027985:+47594 Msa1436640:CDS
CTAGACTTAAACATTAAAGG+TGG 0.670077 tig0027985:+48731 Msa1436640:CDS
ATGGAGGTGATAATGAAGGG+GGG 0.671828 tig0027985:+47610 Msa1436640:CDS
TATGGAGGTGATAATGAAGG+GGG 0.676383 tig0027985:+47609 Msa1436640:CDS
TCGGTTGTCCACCTCAACCT+CGG 0.676640 tig0027985:-46492 None:intergenic
GAGATTGGAAGAACAACTTG+AGG 0.683401 tig0027985:+47901 Msa1436640:CDS
TTGTGACAGCGTCAACAAAG+CGG 0.705022 tig0027985:-46524 None:intergenic
CTAAAGCCTCAAGTTGAAGG+GGG 0.707595 tig0027985:+48698 Msa1436640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTAAATATTTTCTTATTAA+TGG + tig0027985:46813-46832 Msa1436640:intron 10.0%
!!! ATTTTATTTTTTGACTAAAA+AGG - tig0027985:47017-47036 None:intergenic 10.0%
!!! ATGATATATTTAATTTATGA+AGG + tig0027985:47076-47095 Msa1436640:intron 10.0%
!!! AACACTAGAATTTTAAATAA+AGG - tig0027985:46686-46705 None:intergenic 15.0%
!! ATAAACTAGTAGTTAATAAT+AGG + tig0027985:47100-47119 Msa1436640:intron 15.0%
!! TATTATCATTAATTAGAGAA+TGG + tig0027985:47165-47184 Msa1436640:intron 15.0%
!! AATTAAAATGCTAATTACAT+AGG - tig0027985:47779-47798 None:intergenic 15.0%
!!! ATTCATTTGAATTTTCCATT+TGG + tig0027985:46364-46383 Msa1436640:five_prime_UTR 20.0%
!!! TTATTTTTTGACTAAAAAGG+TGG - tig0027985:47014-47033 None:intergenic 20.0%
!! TATATCATCACTATGTAAAA+AGG - tig0027985:47064-47083 None:intergenic 20.0%
!!! GCAATTATTTCTATTACATT+TGG + tig0027985:47508-47527 Msa1436640:intron 20.0%
!!! TTTTTGTCTTTCATCTTTTT+AGG + tig0027985:47537-47556 Msa1436640:intron 20.0%
!! AATCAAATATGGTTTCATAT+AGG + tig0027985:48789-48808 Msa1436640:CDS 20.0%
!! ATCAAATATGGTTTCATATA+GGG + tig0027985:48790-48809 Msa1436640:CDS 20.0%
!! ACATTCAAGTTAACTTGAAA+GGG + tig0027985:46712-46731 Msa1436640:intron 25.0%
! ATTAACCTTAGAACAGATTT+AGG - tig0027985:46932-46951 None:intergenic 25.0%
!!! TAAATCTGTTCTAAGGTTAA+TGG + tig0027985:46931-46950 Msa1436640:CDS 25.0%
!!! AAATCTGTTCTAAGGTTAAT+GGG + tig0027985:46932-46951 Msa1436640:CDS 25.0%
! ATGTAAAAAGGCAAAAGAAA+AGG - tig0027985:47052-47071 None:intergenic 25.0%
! ATGGTTACTGAAATTTACAT+AGG - tig0027985:47568-47587 None:intergenic 25.0%
!!! TTTTGAAAGAGATGAGAATT+TGG - tig0027985:47713-47732 None:intergenic 25.0%
!!! AGAAGTTTTAGATGAGAATT+TGG - tig0027985:47754-47773 None:intergenic 25.0%
! AATTGAAGTTCAAAAGAGAT+TGG + tig0027985:47886-47905 Msa1436640:CDS 25.0%
! TTCTCAATTGTCAATTACAT+AGG - tig0027985:48012-48031 None:intergenic 25.0%
! TAAGGATATATATACTCCTT+AGG - tig0027985:48243-48262 None:intergenic 25.0%
! TAAGGATATATATACTCCTT+AGG - tig0027985:48243-48262 None:intergenic 25.0%
! TAAATTGCAAATGAGAATAG+AGG + tig0027985:48430-48449 Msa1436640:CDS 25.0%
! GATAGTAAAGAAAACATACT+AGG + tig0027985:48596-48615 Msa1436640:CDS 25.0%
!!! TTCAATTATCAAGAAGTACT+AGG + tig0027985:48656-48675 Msa1436640:CDS 25.0%
!!! TCAATTATCAAGAAGTACTA+GGG + tig0027985:48657-48676 Msa1436640:CDS 25.0%
TTCAAATGAATCTCACTTGA+AGG - tig0027985:46355-46374 None:intergenic 30.0%
TTCTATCTTCAACTTCCAAA+TGG - tig0027985:46382-46401 None:intergenic 30.0%
TGGAAGTTGAAGATAGAAAA+AGG + tig0027985:46384-46403 Msa1436640:five_prime_UTR 30.0%
AAGTTGAAGATAGAAAAAGG+AGG + tig0027985:46387-46406 Msa1436640:five_prime_UTR 30.0%
ACAAAACTAGATGAAAGAAG+AGG - tig0027985:46575-46594 None:intergenic 30.0%
! CACATTCAAGTTAACTTGAA+AGG + tig0027985:46711-46730 Msa1436640:intron 30.0%
!!! AACTTGAAAGGGAAGTTTTT+TGG + tig0027985:46723-46742 Msa1436640:intron 30.0%
TGGTTAGATTTGACATTGAA+AGG + tig0027985:46743-46762 Msa1436640:intron 30.0%
GAATCATAAGCTTTCACAAT+TGG - tig0027985:46795-46814 None:intergenic 30.0%
!! TTGTTTGCTTTTGTGTTTAG+AGG + tig0027985:46901-46920 Msa1436640:intron 30.0%
CTAAGGTTAATGGGATTAAA+AGG + tig0027985:46941-46960 Msa1436640:CDS 30.0%
TAGAAGTTGTTACCTGTAAA+TGG - tig0027985:46991-47010 None:intergenic 30.0%
AAAGAGTCTCAAATAAGTGA+AGG + tig0027985:47380-47399 Msa1436640:intron 30.0%
AAGAGTCTCAAATAAGTGAA+GGG + tig0027985:47381-47400 Msa1436640:intron 30.0%
AATTTCAGTAACCATTCTTC+AGG + tig0027985:47573-47592 Msa1436640:CDS 30.0%
ATTTCAGTAACCATTCTTCA+GGG + tig0027985:47574-47593 Msa1436640:CDS 30.0%
GAATTGTCGTTAAACTAGTT+AGG - tig0027985:47829-47848 None:intergenic 30.0%
! GACTCACATACTAATTTTAG+TGG - tig0027985:48207-48226 None:intergenic 30.0%
GTCTTATAATAAGAGACCTA+AGG + tig0027985:48224-48243 Msa1436640:intron 30.0%
GGTTAGAAATTCACTAGTTA+GGG - tig0027985:48267-48286 None:intergenic 30.0%
TGGTTAGAAATTCACTAGTT+AGG - tig0027985:48268-48287 None:intergenic 30.0%
CTAGTGAATTTCTAACCAAT+TGG + tig0027985:48270-48289 Msa1436640:intron 30.0%
CTAGAATTAAACAGTCCAAT+TGG - tig0027985:48288-48307 None:intergenic 30.0%
CAATTGGACTGTTTAATTCT+AGG + tig0027985:48286-48305 Msa1436640:intron 30.0%
GTCTTATAATAAGAGACCTA+AGG + tig0027985:48224-48243 Msa1436640:intron 30.0%
GGTTAGAAATTCACTAGTTA+GGG - tig0027985:48267-48286 None:intergenic 30.0%
TGGTTAGAAATTCACTAGTT+AGG - tig0027985:48268-48287 None:intergenic 30.0%
CTAGTGAATTTCTAACCAAT+TGG + tig0027985:48270-48289 Msa1436640:intron 30.0%
CTAGAATTAAACAGTCCAAT+TGG - tig0027985:48288-48307 None:intergenic 30.0%
CAATTGGACTGTTTAATTCT+AGG + tig0027985:48286-48305 Msa1436640:intron 30.0%
CTTGAGCATGATTCTTATTA+TGG - tig0027985:48634-48653 None:intergenic 30.0%
CAGCTAGACTTAAACATTAA+AGG + tig0027985:48728-48747 Msa1436640:CDS 30.0%
CTAGACTTAAACATTAAAGG+TGG + tig0027985:48731-48750 Msa1436640:CDS 30.0%
AATGAACTTGTATCTGTAGA+TGG + tig0027985:48755-48774 Msa1436640:CDS 30.0%
AGCTGAAATGGAATCAAATA+TGG + tig0027985:48778-48797 Msa1436640:CDS 30.0%
AAGATAGAAAAAGGAGGAGA+AGG + tig0027985:46393-46412 Msa1436640:five_prime_UTR 35.0%
TCATTTGAAGAGCCATTTAC+AGG + tig0027985:46976-46995 Msa1436640:CDS 35.0%
TAGAGAATGGTGCACTTTAA+AGG + tig0027985:47178-47197 Msa1436640:intron 35.0%
AGAGAATGGTGCACTTTAAA+GGG + tig0027985:47179-47198 Msa1436640:intron 35.0%
! AACTTGCAGAAGTATAGACT+TGG + tig0027985:47289-47308 Msa1436640:intron 35.0%
TTCATTATCACCTCCATAGT+TGG - tig0027985:47607-47626 None:intergenic 35.0%
! AACTATGGAGGTGATAATGA+AGG + tig0027985:47606-47625 Msa1436640:CDS 35.0%
! ACTATGGAGGTGATAATGAA+GGG + tig0027985:47607-47626 Msa1436640:CDS 35.0%
ATTCACAGAGAAATCCCAAT+AGG + tig0027985:47845-47864 Msa1436640:intron 35.0%
TCTAGAAGAGTCCTATTGTA+TGG - tig0027985:48125-48144 None:intergenic 35.0%
AAATTCACTAGTTAGGGCTA+AGG - tig0027985:48261-48280 None:intergenic 35.0%
AAATTCACTAGTTAGGGCTA+AGG - tig0027985:48261-48280 None:intergenic 35.0%
AAATGAGAATAGAGGCTCAA+GGG + tig0027985:48438-48457 Msa1436640:CDS 35.0%
TAATGCATCAAAAGCTCAAC+TGG + tig0027985:48526-48545 Msa1436640:CDS 35.0%
! CTCAGCTTTGTCAAATTTCA+TGG + tig0027985:48559-48578 Msa1436640:CDS 35.0%
ACTAGGGACAGAAGAAAATA+AGG + tig0027985:48673-48692 Msa1436640:CDS 35.0%
!! AACTAAAGCCTCAAGTTGAA+GGG + tig0027985:48696-48715 Msa1436640:CDS 35.0%
! AAAAGGAGGAGAAGGTATGA+TGG + tig0027985:46401-46420 Msa1436640:exon 40.0%
! AAGGTATGATGGAAAGTGGA+GGG + tig0027985:46412-46431 Msa1436640:exon 40.0%
! AGAAGAGGTACATACTGTCA+GGG - tig0027985:46560-46579 None:intergenic 40.0%
! AAGAAGAGGTACATACTGTC+AGG - tig0027985:46561-46580 None:intergenic 40.0%
! GACATTGAAAGGAAGTGTGA+TGG + tig0027985:46754-46773 Msa1436640:intron 40.0%
! AGGAAGTGTGATGGAGAATT+TGG + tig0027985:46763-46782 Msa1436640:intron 40.0%
! GGAAGTGTGATGGAGAATTT+GGG + tig0027985:46764-46783 Msa1436640:intron 40.0%
! GAAGTGTGATGGAGAATTTG+GGG + tig0027985:46765-46784 Msa1436640:intron 40.0%
CGACTCCTAAATCTGTTCTA+AGG + tig0027985:46924-46943 Msa1436640:CDS 40.0%
TGGTATTAGTCCCTGAAGAA+TGG - tig0027985:47587-47606 None:intergenic 40.0%
TCAGGGACTAATACCAACTA+TGG + tig0027985:47591-47610 Msa1436640:CDS 40.0%
! CTATGGAGGTGATAATGAAG+GGG + tig0027985:47608-47627 Msa1436640:CDS 40.0%
! TATGGAGGTGATAATGAAGG+GGG + tig0027985:47609-47628 Msa1436640:CDS 40.0%
GAGATTGGAAGAACAACTTG+AGG + tig0027985:47901-47920 Msa1436640:CDS 40.0%
TGCCTATAATGTATCATGCC+CGG + tig0027985:48078-48097 Msa1436640:intron 40.0%
CAAATGAGAATAGAGGCTCA+AGG + tig0027985:48437-48456 Msa1436640:CDS 40.0%
CAAACAAGCCTTTCTCAAGA+TGG + tig0027985:48491-48510 Msa1436640:CDS 40.0%
!! GAACTAAAGCCTCAAGTTGA+AGG + tig0027985:48695-48714 Msa1436640:CDS 40.0%
!! ACTAAAGCCTCAAGTTGAAG+GGG + tig0027985:48697-48716 Msa1436640:CDS 40.0%
ATCTGTAGATGGAGCTGAAA+TGG + tig0027985:48766-48785 Msa1436640:CDS 40.0%
! GGAGAAGGTATGATGGAAAG+TGG + tig0027985:46408-46427 Msa1436640:exon 45.0%
! GAAGGTATGATGGAAAGTGG+AGG + tig0027985:46411-46430 Msa1436640:exon 45.0%
! GGAGGAATTGAAGGGTATGA+TGG + tig0027985:46438-46457 Msa1436640:CDS 45.0%
AACAAAGCGGTCGTGAAGAT+CGG - tig0027985:46514-46533 None:intergenic 45.0%
TTGTGACAGCGTCAACAAAG+CGG - tig0027985:46527-46546 None:intergenic 45.0%
GGGACTAATACCAACTATGG+AGG + tig0027985:47594-47613 Msa1436640:CDS 45.0%
! ATGGAGGTGATAATGAAGGG+GGG + tig0027985:47610-47629 Msa1436640:CDS 45.0%
!! TCCCAATAGGAGAAGCACTA+AGG + tig0027985:47858-47877 Msa1436640:CDS 45.0%
GCCTTAGTGCTTCTCCTATT+GGG - tig0027985:47862-47881 None:intergenic 45.0%
TGCCTTAGTGCTTCTCCTAT+TGG - tig0027985:47863-47882 None:intergenic 45.0%
GACCGGGCATGATACATTAT+AGG - tig0027985:48083-48102 None:intergenic 45.0%
TGTCCTTCGCACCATACAAT+AGG + tig0027985:48111-48130 Msa1436640:intron 45.0%
AGTCCTATTGTATGGTGCGA+AGG - tig0027985:48117-48136 None:intergenic 45.0%
!! AGAGGCTCAAGGGAAGTATT+TGG + tig0027985:48448-48467 Msa1436640:CDS 45.0%
TGCTCTGTCCATCTTGAGAA+AGG - tig0027985:48502-48521 None:intergenic 45.0%
!! CTAAAGCCTCAAGTTGAAGG+GGG + tig0027985:48698-48717 Msa1436640:CDS 45.0%
! ATGATGGAAAGTGGAGGGAG+AGG + tig0027985:46417-46436 Msa1436640:CDS 50.0%
GAGGGAGAGGAGGAATTGAA+GGG + tig0027985:46430-46449 Msa1436640:CDS 50.0%
GTTGACGCTGTCACAAAGCT+TGG + tig0027985:46531-46550 Msa1436640:CDS 50.0%
!! GGCTCAAGGGAAGTATTTGG+AGG + tig0027985:48451-48470 Msa1436640:CDS 50.0%
ATTGCACCCCCTTCAACTTG+AGG - tig0027985:48707-48726 None:intergenic 50.0%
ATGGAAAGTGGAGGGAGAGG+AGG + tig0027985:46420-46439 Msa1436640:CDS 55.0%
GGAGGGAGAGGAGGAATTGA+AGG + tig0027985:46429-46448 Msa1436640:CDS 55.0%
TCGGTTGTCCACCTCAACCT+CGG - tig0027985:46495-46514 None:intergenic 55.0%
GACGCTGTCACAAAGCTTGG+TGG + tig0027985:46534-46553 Msa1436640:CDS 55.0%
GAAGGACACAACGAACGACC+GGG - tig0027985:48099-48118 None:intergenic 55.0%
CGAAGGACACAACGAACGAC+CGG - tig0027985:48100-48119 None:intergenic 55.0%
TCCACCTCAACCTCGGCTTC+GGG - tig0027985:46488-46507 None:intergenic 60.0%
GTCCACCTCAACCTCGGCTT+CGG - tig0027985:46489-46508 None:intergenic 60.0%
TGACGAGAGACCCGAAGCCG+AGG + tig0027985:46475-46494 Msa1436640:CDS 65.0%
GAGACCCGAAGCCGAGGTTG+AGG + tig0027985:46481-46500 Msa1436640:CDS 65.0%
ACCCGAAGCCGAGGTTGAGG+TGG + tig0027985:46484-46503 Msa1436640:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0027985 gene 46352 48826 46352 ID=Msa1436640;Name=Msa1436640
tig0027985 mRNA 46352 48826 46352 ID=Msa1436640-mRNA-1;Parent=Msa1436640;Name=Msa1436640-mRNA-1;_AED=0.02;_eAED=0.02;_QI=65|0.2|0.16|1|1|1|6|0|277
tig0027985 exon 46352 46564 46352 ID=Msa1436640-mRNA-1:exon:10302;Parent=Msa1436640-mRNA-1
tig0027985 exon 46921 46997 46921 ID=Msa1436640-mRNA-1:exon:10303;Parent=Msa1436640-mRNA-1
tig0027985 exon 47298 47358 47298 ID=Msa1436640-mRNA-1:exon:10304;Parent=Msa1436640-mRNA-1
tig0027985 exon 47559 47631 47559 ID=Msa1436640-mRNA-1:exon:10305;Parent=Msa1436640-mRNA-1
tig0027985 exon 47853 47922 47853 ID=Msa1436640-mRNA-1:exon:10306;Parent=Msa1436640-mRNA-1
tig0027985 exon 48422 48826 48422 ID=Msa1436640-mRNA-1:exon:10307;Parent=Msa1436640-mRNA-1
tig0027985 five_prime_UTR 46352 46416 46352 ID=Msa1436640-mRNA-1:five_prime_utr;Parent=Msa1436640-mRNA-1
tig0027985 CDS 46417 46564 46417 ID=Msa1436640-mRNA-1:cds;Parent=Msa1436640-mRNA-1
tig0027985 CDS 46921 46997 46921 ID=Msa1436640-mRNA-1:cds;Parent=Msa1436640-mRNA-1
tig0027985 CDS 47298 47358 47298 ID=Msa1436640-mRNA-1:cds;Parent=Msa1436640-mRNA-1
tig0027985 CDS 47559 47631 47559 ID=Msa1436640-mRNA-1:cds;Parent=Msa1436640-mRNA-1
tig0027985 CDS 47853 47922 47853 ID=Msa1436640-mRNA-1:cds;Parent=Msa1436640-mRNA-1
tig0027985 CDS 48422 48826 48422 ID=Msa1436640-mRNA-1:cds;Parent=Msa1436640-mRNA-1
Gene Sequence

>Msa1436640

ATGATGGAAAGTGGAGGGAGAGGAGGAATTGAAGGGTATGATGGAGTGATGATGACGATGACGAGAGACCCGAAGCCGAGGTTGAGGTGGACAACCGATCTTCACGACCGCTTTGTTGACGCTGTCACAAAGCTTGGTGGCCCTGACAAGGCGACTCCTAAATCTGTTCTAAGGTTAATGGGATTAAAAGGTTTGACATTATATCATTTGAAGAGCCATTTACAGAAGTATAGACTTGGACAACATGCTCGAAAACAAAATGAAGAACAATTCAAAGAGAATAATAGATGTTCCTATGTAAATTTCAGTAACCATTCTTCAGGGACTAATACCAACTATGGAGGTGATAATGAAGGGGGAGAAATCCCAATAGGAGAAGCACTAAGGCAACAAATTGAAGTTCAAAAGAGATTGGAAGAACAACTTGAGGTACAAAATAAATTGCAAATGAGAATAGAGGCTCAAGGGAAGTATTTGGAGGCAGTGTTAGAGAAAGCACAAACAAGCCTTTCTCAAGATGGACAGAGCAATCTTAATGCATCAAAAGCTCAACTGGTTGAGTTCAACTCAGCTTTGTCAAATTTCATGGAAAATATGAATAAAGATAGTAAAGAAAACATACTAGGCATGAATGAATTCCATAATAAGAATCATGCTCAAGCTTTCAATTATCAAGAAGTACTAGGGACAGAAGAAAATAAGGAACTAAAGCCTCAAGTTGAAGGGGGTGCAATACAGCTAGACTTAAACATTAAAGGTGGCAATGAACTTGTATCTGTAGATGGAGCTGAAATGGAATCAAATATGGTTTCATATAGGGTATACCGTTTTTGA

Protein sequence

>Msa1436640

MMESGGRGGIEGYDGVMMTMTRDPKPRLRWTTDLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQHARKQNEEQFKENNRCSYVNFSNHSSGTNTNYGGDNEGGEIPIGEALRQQIEVQKRLEEQLEVQNKLQMRIEAQGKYLEAVLEKAQTSLSQDGQSNLNASKAQLVEFNSALSNFMENMNKDSKENILGMNEFHNKNHAQAFNYQEVLGTEENKELKPQVEGGAIQLDLNIKGGNELVSVDGAEMESNMVSYRVYRF*