AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0173580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0173580 MtrunA17_Chr1g0191941 89.303 402 41 1 79 480 7 406 0.0 731
Msa0173580 MtrunA17_Chr7g0272711 54.176 467 200 6 25 480 22 485 2.90e-162 468
Msa0173580 MtrunA17_Chr2g0296331 47.122 469 231 4 28 479 16 484 1.91e-147 430
Msa0173580 MtrunA17_Chr4g0066981 47.752 467 220 4 28 479 23 480 1.49e-142 417
Msa0173580 MtrunA17_Chr1g0191951 94.872 78 4 0 1 78 1 78 3.51e-47 158
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0173580 AT1G09020.1 49.087 493 231 4 1 480 1 486 3.65e-157 455

Find 136 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTCCTCACTTGTTTGTT+TGG 0.213376 1_4:+58901962 Msa0173580:CDS
TGGCTCCTGTGTGGGATTCT+AGG 0.216648 1_4:+58904919 Msa0173580:CDS
GTTTAATGGTCACTTTCTTT+AGG 0.241162 1_4:+58907993 Msa0173580:three_prime_UTR
GTTCATATTTATATTAATTT+AGG 0.248545 1_4:-58901752 None:intergenic
CACTTGTTTGTTTGGCCTCA+TGG 0.250434 1_4:+58901970 Msa0173580:CDS
CACTTTCTTTAGGATGAAAT+TGG 0.252484 1_4:+58908003 Msa0173580:three_prime_UTR
ATACCAATTGTGGATGATTC+TGG 0.255262 1_4:+58906995 Msa0173580:CDS
CGTTGCAATTGGCTGTTTAT+TGG 0.259307 1_4:-58906752 None:intergenic
GTTCAATACCTTTGGGTAGA+TGG 0.263569 1_4:+58906710 Msa0173580:CDS
ATGCTTTCAGGAAGTATCTT+TGG 0.275765 1_4:+58904899 Msa0173580:intron
AACTCAAGTTTCTTGTTGTT+TGG 0.276317 1_4:-58901514 None:intergenic
AAGCGTTTCAAGAACGATTA+TGG 0.296514 1_4:+58906658 Msa0173580:CDS
ATTGTTGGGTTAGTTTAGTT+TGG 0.300163 1_4:+58907931 Msa0173580:exon
ATGGAACGCTTTGCTAATTC+TGG 0.300906 1_4:+58907664 Msa0173580:CDS
ACCGATTGGTTCAATACCTT+TGG 0.309132 1_4:+58906702 Msa0173580:CDS
GCATTGAATTTGAGACAAAT+TGG 0.317046 1_4:+58907580 Msa0173580:CDS
GAAAAGCGCTTAACCGTATA+TGG 0.324882 1_4:-58901562 None:intergenic
TACTGCTTCTCATTTGCTTC+CGG 0.327253 1_4:+58904567 Msa0173580:CDS
TCTCATTTGCTTCCGGAGTC+TGG 0.337135 1_4:+58904574 Msa0173580:CDS
AACAAGTGAGGAATGGAAAA+AGG 0.342501 1_4:-58901955 None:intergenic
GAATGGGAGGAAAACTGTTT+TGG 0.348653 1_4:+58907953 Msa0173580:three_prime_UTR
ATTAAGAAATAAATTAATCT+TGG 0.356672 1_4:+58908070 Msa0173580:three_prime_UTR
GGCATCCCATGTAACATATA+TGG 0.360054 1_4:-58903842 None:intergenic
TGGGTTAGTTTAGTTTGGAA+TGG 0.379983 1_4:+58907936 Msa0173580:exon
CAGTAGCATGCATCCATATA+CGG 0.387731 1_4:+58901549 Msa0173580:five_prime_UTR
GAACGATTATGGTTCTTTGC+CGG 0.389922 1_4:+58906669 Msa0173580:CDS
CGCCACAGTGAACACTATTT+CGG 0.390725 1_4:+58903811 Msa0173580:CDS
TTTCTATGCGGTTCTTTCAC+AGG 0.392143 1_4:+58902006 Msa0173580:CDS
GGGTTAGTTTAGTTTGGAAT+GGG 0.404174 1_4:+58907937 Msa0173580:exon
CCGATTGGTTCAATACCTTT+GGG 0.410101 1_4:+58906703 Msa0173580:CDS
GAGCAGCAGCCATTTATAAA+CGG 0.418064 1_4:+58903782 Msa0173580:CDS
AGCAGCAGCCATTTATAAAC+GGG 0.425365 1_4:+58903783 Msa0173580:CDS
CGAATTGAAGGCCGCCCGAC+TGG 0.426158 1_4:+58902462 Msa0173580:CDS
GCTGCAGGTAGAGGAGGAAA+TGG 0.428068 1_4:+58901898 Msa0173580:CDS
CCAATCGGTATTTGAAGAAC+CGG 0.430303 1_4:-58906688 None:intergenic
TTTGGCCTTAGCGTTGCAAT+TGG 0.432792 1_4:-58906763 None:intergenic
ATTGCATATTCTATATGAAC+AGG 0.444363 1_4:+58904735 Msa0173580:CDS
TCTAGGAAGTGCAAGTTTGT+TGG 0.444547 1_4:+58904936 Msa0173580:CDS
AATGTGGAACTGATAGTAAT+GGG 0.445752 1_4:+58906259 Msa0173580:CDS
GGTTCATCAGCTGCAGGTAG+AGG 0.446142 1_4:+58901889 Msa0173580:CDS
TGATGTGTTCAAATTATTGT+TGG 0.453571 1_4:+58907916 Msa0173580:CDS
TTCAATACCTTTGGGTAGAT+GGG 0.455387 1_4:+58906711 Msa0173580:CDS
TTATACTTCCAACGTGTTTG+AGG 0.461890 1_4:+58907620 Msa0173580:CDS
TTACCAATGTCTCGAATTGA+AGG 0.465371 1_4:+58902450 Msa0173580:CDS
GCGGTGAACCCGTTTATAAA+TGG 0.465452 1_4:-58903791 None:intergenic
AGAATAATACAAATGAATAC+AGG 0.476525 1_4:-58901584 None:intergenic
GGGTAGATGGGCGCCAAAAG+TGG 0.478271 1_4:+58906723 Msa0173580:CDS
AAGTCCTTCATCAGTAAAAG+TGG 0.478439 1_4:-58906193 None:intergenic
GAACCAGAATCATCCACAAT+TGG 0.479679 1_4:-58906998 None:intergenic
TTCAGTGCTTGAATAATGTC+CGG 0.484827 1_4:-58904972 None:intergenic
AGAGCAAACTCTGGTGTCCT+AGG 0.487042 1_4:-58904502 None:intergenic
TCACAGTGATCTTACTGCAT+TGG 0.488595 1_4:+58907122 Msa0173580:intron
GATCCCTTGCACACTCCTGC+AGG 0.489091 1_4:-58907882 None:intergenic
TAATTTGAACACATCACCTA+TGG 0.489576 1_4:-58907909 None:intergenic
GTTGTTTGCTACTTGACTCC+AGG 0.490524 1_4:+58902492 Msa0173580:CDS
CCAAATACCGTATGAAATCC+TGG 0.491664 1_4:-58902510 None:intergenic
GGTAGATGGGCGCCAAAAGT+GGG 0.495369 1_4:+58906724 Msa0173580:CDS
AGTATCTTTGGCTCCTGTGT+GGG 0.498993 1_4:+58904911 Msa0173580:CDS
CGATCCATTGCATGTGGTGA+TGG 0.505024 1_4:+58907645 Msa0173580:CDS
TATATGATGTATATTCAAGA+AGG 0.507403 1_4:+58907023 Msa0173580:CDS
ATGCATTCTTCTTCCGAGGA+CGG 0.508228 1_4:+58906509 Msa0173580:CDS
CATTATTCAAGCACTGAAAG+AGG 0.510834 1_4:+58904977 Msa0173580:CDS
GATGTGTTCAAATTATTGTT+GGG 0.510954 1_4:+58907917 Msa0173580:CDS
ATATTTATATTAATTTAGGC+AGG 0.512186 1_4:-58901748 None:intergenic
GAGAGATACTAAAATTATCC+AGG 0.512926 1_4:-58907173 None:intergenic
CAAATTGGAAAATGTCCTTA+CGG 0.513581 1_4:+58907595 Msa0173580:CDS
CCGGTTCTTCAAATACCGAT+TGG 0.514318 1_4:+58906688 Msa0173580:CDS
GCAGCACTAAGAGAAGCATT+TGG 0.515122 1_4:-58906781 None:intergenic
GTAATGGGAAAGCATATCCT+TGG 0.515149 1_4:+58906274 Msa0173580:CDS
CAATGTGGAACTGATAGTAA+TGG 0.515165 1_4:+58906258 Msa0173580:CDS
TGGTGGTGAAGTCTGCCTGC+AGG 0.517145 1_4:+58907867 Msa0173580:CDS
CGTTCCATCACCACATGCAA+TGG 0.521140 1_4:-58907649 None:intergenic
AAAGTGGATCGATGACTCTC+CGG 0.522520 1_4:-58906177 None:intergenic
TTAGTTTAGTTTGGAATGGG+AGG 0.524609 1_4:+58907940 Msa0173580:exon
TTTGCTTCCGGAGTCTGGCA+AGG 0.526888 1_4:+58904579 Msa0173580:CDS
TGATTTGAGATTGAAATGTC+AGG 0.532626 1_4:+58901868 Msa0173580:exon
TTCTATGCGGTTCTTTCACA+GGG 0.532666 1_4:+58902007 Msa0173580:CDS
AGCTGCAGATGGGATCTACT+AGG 0.536186 1_4:-58903863 None:intergenic
CTGAGGAGTTGAGCCGTCCT+CGG 0.536297 1_4:-58906522 None:intergenic
TGCTACTAGCTAGTAATCAA+AGG 0.541349 1_4:+58901821 Msa0173580:five_prime_UTR
TGTTGGAGTGCTTAGTGCAC+CGG 0.541788 1_4:+58904953 Msa0173580:CDS
CCCAAAGGTATTGAACCAAT+CGG 0.545010 1_4:-58906703 None:intergenic
AAAGGTTGAGGATCAGGTAC+TGG 0.545680 1_4:-58901937 None:intergenic
AGTTAGCTCAATACCAATTG+TGG 0.548842 1_4:+58906985 Msa0173580:CDS
ATGTCTTCTAGTCTCTCAAA+AGG 0.548979 1_4:-58906443 None:intergenic
TATTATGCATTCTTCTTCCG+AGG 0.549168 1_4:+58906505 Msa0173580:CDS
TATCAAACCTTGCCAGACTC+CGG 0.549980 1_4:-58904586 None:intergenic
TTAGGATGAAATTGGAAGGA+GGG 0.550294 1_4:+58908011 Msa0173580:three_prime_UTR
AATGTATGCTAGGATAAGCC+TGG 0.551088 1_4:+58907155 Msa0173580:CDS
AAGTATCTTTGGCTCCTGTG+TGG 0.554132 1_4:+58904910 Msa0173580:CDS
ATGTCAGGTTCATCAGCTGC+AGG 0.555266 1_4:+58901883 Msa0173580:CDS
GCAGAACCATATATGTTACA+TGG 0.555752 1_4:+58903836 Msa0173580:CDS
AACAGCCAATTGCAACGCTA+AGG 0.557100 1_4:+58906758 Msa0173580:CDS
TTCTTTAGGATGAAATTGGA+AGG 0.559424 1_4:+58908007 Msa0173580:three_prime_UTR
TCTGCCTGCAGGAGTGTGCA+AGG 0.559432 1_4:+58907878 Msa0173580:CDS
GCTATCGCTCTAATGAATCA+AGG 0.560125 1_4:+58906802 Msa0173580:CDS
CCAAACAAACAAGTGAGGAA+TGG 0.562084 1_4:-58901962 None:intergenic
TTTAGGATGAAATTGGAAGG+AGG 0.565109 1_4:+58908010 Msa0173580:three_prime_UTR
AAACAACTTGAAATCCAGTC+GGG 0.566738 1_4:-58902476 None:intergenic
GAATGCATAATAGCAACTAC+TGG 0.570220 1_4:-58906494 None:intergenic
CGGCCTTCAATTCGAGACAT+TGG 0.573549 1_4:-58902453 None:intergenic
TCATCAGCTGCAGGTAGAGG+AGG 0.573943 1_4:+58901892 Msa0173580:CDS
CTTGACTCCAGGATTTCATA+CGG 0.581995 1_4:+58902503 Msa0173580:CDS
TACAGGTGTTGGAGAAGTTG+TGG 0.586664 1_4:+58907847 Msa0173580:intron
AGAAACATACTTTAGCAGCA+TGG 0.589951 1_4:+58906217 Msa0173580:CDS
GAGACATGCAGAGCAAACTC+TGG 0.590289 1_4:-58904511 None:intergenic
GTAGATGGGCGCCAAAAGTG+GGG 0.591294 1_4:+58906725 Msa0173580:CDS
CTAGATGTGAAATGTATGCT+AGG 0.597927 1_4:+58907145 Msa0173580:CDS
CACAGTGAACACTATTTCGG+TGG 0.598731 1_4:+58903814 Msa0173580:CDS
GAAGTCATATGTAGCAGCTG+AGG 0.600897 1_4:-58906539 None:intergenic
TTGCATTGTGAACTGTGCTA+TGG 0.602161 1_4:-58901698 None:intergenic
GTGCAAGGGATCATTTCCAT+AGG 0.609204 1_4:+58907893 Msa0173580:CDS
CAGAACCATATATGTTACAT+GGG 0.619520 1_4:+58903837 Msa0173580:CDS
CATCACCACATGCAATGGAT+CGG 0.619982 1_4:-58907644 None:intergenic
TAGATGGGCGCCAAAAGTGG+GGG 0.625100 1_4:+58906726 Msa0173580:CDS
GTTGGAAGTATAAGTCCGTA+AGG 0.626388 1_4:-58907610 None:intergenic
CTGCCTGCAGGAGTGTGCAA+GGG 0.626861 1_4:+58907879 Msa0173580:CDS
CAAACAACTTGAAATCCAGT+CGG 0.630864 1_4:-58902477 None:intergenic
CGAAATAGTGTTCACTGTGG+CGG 0.638369 1_4:-58903810 None:intergenic
GAGAGAAAATTACAGCAATG+TGG 0.643369 1_4:+58906243 Msa0173580:CDS
AGTGAATGAAAATGAGACGT+AGG 0.645002 1_4:-58901651 None:intergenic
CTTACATCAACAAAACTCCA+AGG 0.646824 1_4:-58906291 None:intergenic
GAGGTCCGATCCATTGCATG+TGG 0.652746 1_4:+58907639 Msa0173580:CDS
TTTGGCGCCCATCTACCCAA+AGG 0.652925 1_4:-58906718 None:intergenic
TTTGTGTGGATGGTGTGTGG+CGG 0.661221 1_4:+58903753 Msa0173580:CDS
TATTAATGTCACTAGACACA+TGG 0.669317 1_4:+58903892 Msa0173580:CDS
CAACTTGAAATCCAGTCGGG+CGG 0.674400 1_4:-58902473 None:intergenic
GGTGAAACCGCGTTTCTATG+CGG 0.677368 1_4:+58901994 Msa0173580:CDS
GGATCGGACCTCAAACACGT+TGG 0.679462 1_4:-58907628 None:intergenic
TGAGGCCAAACAAACAAGTG+AGG 0.681158 1_4:-58901967 None:intergenic
TTGTTTGTTTGGCCTCATGG+AGG 0.688091 1_4:+58901973 Msa0173580:CDS
AGGTGTTGGAGAAGTTGTGG+TGG 0.695836 1_4:+58907850 Msa0173580:intron
CACTTCCTAGAATCCCACAC+AGG 0.698640 1_4:-58904924 None:intergenic
GAAAGAACCGCATAGAAACG+CGG 0.718422 1_4:-58902001 None:intergenic
AACGCGGTTTCACCTCCATG+AGG 0.729601 1_4:-58901985 None:intergenic
CACCGAAATAGTGTTCACTG+TGG 0.763286 1_4:-58903813 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTCATATTTATATTAATTT+AGG - chr1_4:58901755-58901774 None:intergenic 10.0%
!!! GATTTTAAAAATTCATATAA+AGG - chr1_4:58902536-58902555 None:intergenic 10.0%
!! AAGAACTAAAAAATATATAT+AGG + chr1_4:58904135-58904154 Msa0173580:intron 10.0%
!! AGAACTAAAAAATATATATA+GGG + chr1_4:58904136-58904155 Msa0173580:intron 10.0%
!!! AATTCTATTATCATTATTTT+AGG + chr1_4:58905229-58905248 Msa0173580:intron 10.0%
!! AAATATTAGAGATATTTATT+TGG + chr1_4:58905308-58905327 Msa0173580:intron 10.0%
!! AATATTAGAGATATTTATTT+GGG + chr1_4:58905309-58905328 Msa0173580:intron 10.0%
!! ATATAAATAAATATCCAAAA+TGG - chr1_4:58905412-58905431 None:intergenic 10.0%
!!! ATTTTGGATATTTATTTATA+TGG + chr1_4:58905411-58905430 Msa0173580:intron 10.0%
!!! AGATTATTTTAATATAATAC+GGG - chr1_4:58905651-58905670 None:intergenic 10.0%
!!! GAGATTATTTTAATATAATA+CGG - chr1_4:58905652-58905671 None:intergenic 10.0%
!!! TAAATTTTCTACTTAAAATT+GGG - chr1_4:58906361-58906380 None:intergenic 10.0%
!! ATACATTAAAATTAAAATAC+AGG + chr1_4:58907830-58907849 Msa0173580:intron 10.0%
!! ATTAAGAAATAAATTAATCT+TGG + chr1_4:58908070-58908089 Msa0173580:three_prime_UTR 10.0%
!! ATATTTATATTAATTTAGGC+AGG - chr1_4:58901751-58901770 None:intergenic 15.0%
!!! ATATGAATTTTTAAAATCTG+AGG + chr1_4:58902538-58902557 Msa0173580:intron 15.0%
!! AGATAAATGTTAATACAAAT+CGG + chr1_4:58902800-58902819 Msa0173580:intron 15.0%
!! AATGAAAGTTTATTTACAAT+AGG - chr1_4:58903422-58903441 None:intergenic 15.0%
!!! TCAATAAAAGAAGAATTTTT+AGG - chr1_4:58904292-58904311 None:intergenic 15.0%
!! TAAAATATATATTGAACACA+AGG - chr1_4:58904870-58904889 None:intergenic 15.0%
!!! CTAAATATTTTTTACCATTT+AGG + chr1_4:58905154-58905173 Msa0173580:intron 15.0%
!! ATAATGATAATAGAATTCAA+TGG - chr1_4:58905226-58905245 None:intergenic 15.0%
!!! ATAGATTTTGTAAAAACAAA+TGG + chr1_4:58905685-58905704 Msa0173580:intron 15.0%
!!! GTAAATTTTCTACTTAAAAT+TGG - chr1_4:58906362-58906381 None:intergenic 15.0%
!!! TATATTTATTTTTAATCTGC+AGG + chr1_4:58906415-58906434 Msa0173580:intron 15.0%
!! ATGTATAAATTTAATGCTAT+TGG - chr1_4:58907250-58907269 None:intergenic 15.0%
!! TTAAATTGAATATAAAGTGA+AGG + chr1_4:58907388-58907407 Msa0173580:intron 15.0%
!! GTTAAATTTCAATTAGTATA+AGG + chr1_4:58907421-58907440 Msa0173580:intron 15.0%
!! TATTGTTAGACTATATTTAT+CGG + chr1_4:58907497-58907516 Msa0173580:intron 15.0%
!! AGAATAATACAAATGAATAC+AGG - chr1_4:58901587-58901606 None:intergenic 20.0%
!! TCTAGAAAATTATTTGAGTA+TGG + chr1_4:58902156-58902175 Msa0173580:intron 20.0%
!! AAACAAAAAAACTTACCAAA+AGG - chr1_4:58902229-58902248 None:intergenic 20.0%
!!! TGTTTTTGTACTATAATTTC+TGG + chr1_4:58903059-58903078 Msa0173580:intron 20.0%
!! TAAATTTGAATCTACTCATT+TGG + chr1_4:58903631-58903650 Msa0173580:intron 20.0%
!! TAAAAATTGCATAATATGAG+AGG + chr1_4:58903693-58903712 Msa0173580:intron 20.0%
!! AAAAATTGCATAATATGAGA+GGG + chr1_4:58903694-58903713 Msa0173580:intron 20.0%
!! AAAATATATGCAACAAACAA+GGG - chr1_4:58903947-58903966 None:intergenic 20.0%
!! CTTAAGTGTGTTATATATAT+AGG + chr1_4:58903981-58904000 Msa0173580:intron 20.0%
!! AAAATATATATAGGGAGTTT+CGG + chr1_4:58904144-58904163 Msa0173580:intron 20.0%
!! TAAAAAAATTAATCGGTGAA+AGG + chr1_4:58904206-58904225 Msa0173580:intron 20.0%
!! AAAAAAATTAATCGGTGAAA+GGG + chr1_4:58904207-58904226 Msa0173580:intron 20.0%
!! AAACAATCATCAATTGAATA+AGG - chr1_4:58904242-58904261 None:intergenic 20.0%
!!! TATTCAATTGATGATTGTTT+TGG + chr1_4:58904242-58904261 Msa0173580:intron 20.0%
!!! TAAAAGAAGAATTTTTAGGA+GGG - chr1_4:58904288-58904307 None:intergenic 20.0%
!!! ATAAAAGAAGAATTTTTAGG+AGG - chr1_4:58904289-58904308 None:intergenic 20.0%
!! AAGAGAATATAAGAATAATC+AGG - chr1_4:58904376-58904395 None:intergenic 20.0%
!! GCATAAATTTCAATACTATA+AGG - chr1_4:58904434-58904453 None:intergenic 20.0%
!!! ATAGCAATTTATCTGATTTT+TGG + chr1_4:58904645-58904664 Msa0173580:intron 20.0%
!!! AATTTGCTTAAGATAATTTC+AGG + chr1_4:58904675-58904694 Msa0173580:intron 20.0%
!! TTAACTTAATATATGCTTTC+AGG + chr1_4:58904887-58904906 Msa0173580:intron 20.0%
!!! TAATTTCTTTTAACTTCACA+TGG - chr1_4:58905108-58905127 None:intergenic 20.0%
!! TGAAGTTAAAAGAAATTACA+AGG + chr1_4:58905110-58905129 Msa0173580:intron 20.0%
!! ATATTTAGCATAAATCAACT+TGG - chr1_4:58905142-58905161 None:intergenic 20.0%
!! ACTAATTAATTATGCCTAAA+TGG - chr1_4:58905171-58905190 None:intergenic 20.0%
!!! AATCAATCATTTTATGTAGT+AGG + chr1_4:58905257-58905276 Msa0173580:intron 20.0%
!! ATTTATTTATATGGTATGTC+TGG + chr1_4:58905420-58905439 Msa0173580:intron 20.0%
!! GTTATACTTCAATACATTAT+TGG + chr1_4:58905479-58905498 Msa0173580:intron 20.0%
!! GGAAAATAGAATAAAAGATA+AGG - chr1_4:58905881-58905900 None:intergenic 20.0%
!!! AATTTTTCTCATATGTGTTA+AGG - chr1_4:58906319-58906338 None:intergenic 20.0%
!!! TTTAAAATTTTTGCAATGCA+AGG + chr1_4:58906469-58906488 Msa0173580:CDS 20.0%
!! TATATGATGTATATTCAAGA+AGG + chr1_4:58907023-58907042 Msa0173580:CDS 20.0%
!!! TTTTTTTTTCTTTTTCCGTA+AGG + chr1_4:58907460-58907479 Msa0173580:intron 20.0%
!! ATTGTTAGACTATATTTATC+GGG + chr1_4:58907498-58907517 Msa0173580:intron 20.0%
!! TAAAATTAAAATACAGGTGT+TGG + chr1_4:58907836-58907855 Msa0173580:intron 20.0%
!!! CTTTGAAAAACTATGTTTAA+TGG + chr1_4:58907979-58907998 Msa0173580:three_prime_UTR 20.0%
!!! CTAGTTATCTATTTTATTTG+CGG + chr1_4:58908038-58908057 Msa0173580:three_prime_UTR 20.0%
!!! TGTTGTAGAGTTTTAGAAAA+CGG - chr1_4:58901623-58901642 None:intergenic 25.0%
!!! CTCAAATAATTTTCTAGAAC+AGG - chr1_4:58902154-58902173 None:intergenic 25.0%
!!! GAATACCATTTTTCTTTCTT+TGG + chr1_4:58902641-58902660 Msa0173580:intron 25.0%
!!! TTTGTTTTCTCATATTTGCT+TGG + chr1_4:58902692-58902711 Msa0173580:intron 25.0%
!! TTGTTTTCTCATATTTGCTT+GGG + chr1_4:58902693-58902712 Msa0173580:intron 25.0%
!!! ATTGTTTTGATGTTGTTTCA+AGG + chr1_4:58902859-58902878 Msa0173580:intron 25.0%
! ATGTAATGAAAGAGTTGAAA+AGG - chr1_4:58903006-58903025 None:intergenic 25.0%
!!! GGTTTTTTTTTAAGAAGTGT+TGG + chr1_4:58903216-58903235 Msa0173580:intron 25.0%
!! TCTAAAGAGCAATTTTCAAA+GGG + chr1_4:58903368-58903387 Msa0173580:intron 25.0%
! TCTCACAGTTATTAATGTAT+CGG + chr1_4:58903604-58903623 Msa0173580:intron 25.0%
! AAATATATGCAACAAACAAG+GGG - chr1_4:58903946-58903965 None:intergenic 25.0%
! CAAAATATATGCAACAAACA+AGG - chr1_4:58903948-58903967 None:intergenic 25.0%
!! TTTGTTGCATATATTTTGCT+TGG + chr1_4:58903950-58903969 Msa0173580:intron 25.0%
! GATTAACATTATCGTCAAAA+TGG + chr1_4:58904021-58904040 Msa0173580:intron 25.0%
!!! TGCATTTATAGTCTTGTAAT+TGG + chr1_4:58904075-58904094 Msa0173580:intron 25.0%
!! TCAGATAAATTGCTATTGAT+TGG - chr1_4:58904641-58904660 None:intergenic 25.0%
! ATTGCATATTCTATATGAAC+AGG + chr1_4:58904735-58904754 Msa0173580:CDS 25.0%
! TCATGTAAATAGTGTAATGA+GGG - chr1_4:58904774-58904793 None:intergenic 25.0%
!! AAAGAGGTTTGTAGAAATTT+TGG + chr1_4:58904993-58905012 Msa0173580:intron 25.0%
! TTGAATGAAAACTGAACAAT+TGG + chr1_4:58905025-58905044 Msa0173580:intron 25.0%
!! TAGGTTCTAGTAAAACTATT+TGG + chr1_4:58905276-58905295 Msa0173580:intron 25.0%
!! AGGTTCTAGTAAAACTATTT+GGG + chr1_4:58905277-58905296 Msa0173580:intron 25.0%
!! GATTTATAGTTCTTCCATTT+TGG + chr1_4:58905395-58905414 Msa0173580:intron 25.0%
! TTCACTTATAGTAGAAGATA+TGG + chr1_4:58905506-58905525 Msa0173580:intron 25.0%
! TTGTAGTCAAGCTATAAATA+AGG + chr1_4:58905612-58905631 Msa0173580:intron 25.0%
! TGTAGTCAAGCTATAAATAA+GGG + chr1_4:58905613-58905632 Msa0173580:intron 25.0%
! TGTAAAAACAAATGGTATAC+AGG + chr1_4:58905693-58905712 Msa0173580:intron 25.0%
!! AATTTCCCTTATGATCTTTT+TGG + chr1_4:58905781-58905800 Msa0173580:intron 25.0%
!! TTAGATAAATTAGGGACTTT+TGG - chr1_4:58905854-58905873 None:intergenic 25.0%
! AAGGTCTGTTAGATAAATTA+GGG - chr1_4:58905862-58905881 None:intergenic 25.0%
! TAAGGTCTGTTAGATAAATT+AGG - chr1_4:58905863-58905882 None:intergenic 25.0%
!! CTTTTATTCTATTTTCCCAA+TGG + chr1_4:58905884-58905903 Msa0173580:intron 25.0%
! CATGCATATGTTTAAAAGTT+AGG - chr1_4:58906115-58906134 None:intergenic 25.0%
!! CTAACTTTTAAACATATGCA+TGG + chr1_4:58906113-58906132 Msa0173580:intron 25.0%
! ATGTAAGCTTTCACATTTAT+TGG + chr1_4:58906580-58906599 Msa0173580:intron 25.0%
!! AATACATTTTGCTTCTAACA+TGG - chr1_4:58906896-58906915 None:intergenic 25.0%
!! TCTACATTACTTGTTGATTA+AGG + chr1_4:58907215-58907234 Msa0173580:intron 25.0%
! CATGTTTCATTAGTTCATTA+TGG - chr1_4:58907301-58907320 None:intergenic 25.0%
! CATAATGAACTAATGAAACA+TGG + chr1_4:58907299-58907318 Msa0173580:intron 25.0%
! CTAACAATATTAGCATTGTT+AGG - chr1_4:58907486-58907505 None:intergenic 25.0%
! TGATGTGTTCAAATTATTGT+TGG + chr1_4:58907916-58907935 Msa0173580:CDS 25.0%
! GATGTGTTCAAATTATTGTT+GGG + chr1_4:58907917-58907936 Msa0173580:CDS 25.0%
!! AACTCAAGTTTCTTGTTGTT+TGG - chr1_4:58901517-58901536 None:intergenic 30.0%
! TGATTTGAGATTGAAATGTC+AGG + chr1_4:58901868-58901887 Msa0173580:exon 30.0%
ATGCTATCAAAACGAATCAA+AGG - chr1_4:58902352-58902371 None:intergenic 30.0%
GAAAAATGGTATTCTGATCA+AGG - chr1_4:58902635-58902654 None:intergenic 30.0%
GATCTCCAAAGAAAGAAAAA+TGG - chr1_4:58902649-58902668 None:intergenic 30.0%
! TGTTTTCTCATATTTGCTTG+GGG + chr1_4:58902694-58902713 Msa0173580:intron 30.0%
TGCATGTAAAGCAATAGAAA+AGG - chr1_4:58903103-58903122 None:intergenic 30.0%
TACATGCAATGTTTGTATCT+TGG + chr1_4:58903115-58903134 Msa0173580:intron 30.0%
TTGTTGTGGTTTACAACAAA+TGG + chr1_4:58903147-58903166 Msa0173580:intron 30.0%
AGACTTCCAAAATTTCTCTA+GGG - chr1_4:58903351-58903370 None:intergenic 30.0%
TAGACTTCCAAAATTTCTCT+AGG - chr1_4:58903352-58903371 None:intergenic 30.0%
! GTCTAAAGAGCAATTTTCAA+AGG + chr1_4:58903367-58903386 Msa0173580:intron 30.0%
TTAATGATGCATTCACATTC+TGG + chr1_4:58903579-58903598 Msa0173580:intron 30.0%
GATACATTAATAACTGTGAG+AGG - chr1_4:58903605-58903624 None:intergenic 30.0%
GCACAATATCAAACATTTCA+TGG + chr1_4:58903653-58903672 Msa0173580:intron 30.0%
CAGAACCATATATGTTACAT+GGG + chr1_4:58903837-58903856 Msa0173580:CDS 30.0%
!! AATATTTTCAAGCTGCAGAT+GGG - chr1_4:58903876-58903895 None:intergenic 30.0%
!! TAATATTTTCAAGCTGCAGA+TGG - chr1_4:58903877-58903896 None:intergenic 30.0%
TATTAATGTCACTAGACACA+TGG + chr1_4:58903892-58903911 Msa0173580:CDS 30.0%
AATATATGCAACAAACAAGG+GGG - chr1_4:58903945-58903964 None:intergenic 30.0%
! TGCATATATTTTGCTTGGAA+AGG + chr1_4:58903955-58903974 Msa0173580:intron 30.0%
AAAAGAAAGTAGCTTAACCT+TGG + chr1_4:58904459-58904478 Msa0173580:intron 30.0%
TGGAAACATTGAAAAGACAA+AGG - chr1_4:58904621-58904640 None:intergenic 30.0%
!! GCAATTTATCTGATTTTTGG+TGG + chr1_4:58904648-58904667 Msa0173580:intron 30.0%
TAAATAGTGTAATGAGGGAA+GGG - chr1_4:58904769-58904788 None:intergenic 30.0%
CTCATGTAAATAGTGTAATG+AGG - chr1_4:58904775-58904794 None:intergenic 30.0%
CTCATTACACTATTTACATG+AGG + chr1_4:58904773-58904792 Msa0173580:intron 30.0%
AACTGAACAATTGGCAAAAA+TGG + chr1_4:58905034-58905053 Msa0173580:intron 30.0%
TTGGCAAAAATGGTTGAAAA+AGG + chr1_4:58905044-58905063 Msa0173580:intron 30.0%
!!! TTTTAACTTCACATGGACTT+AGG - chr1_4:58905101-58905120 None:intergenic 30.0%
! GCTAAAAGGTACATATTTCA+AGG - chr1_4:58905344-58905363 None:intergenic 30.0%
AAGCATCAATGATAGCTAAA+AGG - chr1_4:58905358-58905377 None:intergenic 30.0%
CTAAATGCTATCTAAGAATG+AGG - chr1_4:58905545-58905564 None:intergenic 30.0%
CTCATTCTTAGATAGCATTT+AGG + chr1_4:58905543-58905562 Msa0173580:intron 30.0%
GTAGTCAAGCTATAAATAAG+GGG + chr1_4:58905614-58905633 Msa0173580:intron 30.0%
AAAGAGAGGATACCAAATAA+AGG - chr1_4:58905729-58905748 None:intergenic 30.0%
! TATTTTCCTTTCCTCATTGT+AGG + chr1_4:58905748-58905767 Msa0173580:intron 30.0%
GAAAGCCAAAAAGATCATAA+GGG - chr1_4:58905789-58905808 None:intergenic 30.0%
TGAAAGCCAAAAAGATCATA+AGG - chr1_4:58905790-58905809 None:intergenic 30.0%
TATAGGACAGAAATAACTAC+TGG - chr1_4:58905814-58905833 None:intergenic 30.0%
TCCTATATTTGACATTGCAT+AGG + chr1_4:58905827-58905846 Msa0173580:intron 30.0%
TCCTATGCAATGTCAAATAT+AGG - chr1_4:58905831-58905850 None:intergenic 30.0%
AAACAAAGAGATTTAGCATC+GGG - chr1_4:58905993-58906012 None:intergenic 30.0%
GAAACAAAGAGATTTAGCAT+CGG - chr1_4:58905994-58906013 None:intergenic 30.0%
TCTCTATTAACACCAATGAT+TGG + chr1_4:58906086-58906105 Msa0173580:intron 30.0%
AAAGTTAGGAAACCAATCAT+TGG - chr1_4:58906101-58906120 None:intergenic 30.0%
AATGTGGAACTGATAGTAAT+GGG + chr1_4:58906259-58906278 Msa0173580:CDS 30.0%
!!! TTATTTTTAATCTGCAGGCT+AGG + chr1_4:58906420-58906439 Msa0173580:intron 30.0%
! TTATTGGCTATGCGTATAAA+TGG + chr1_4:58906596-58906615 Msa0173580:intron 30.0%
! AATGGTTTGGAACTAATGTA+CGG + chr1_4:58906614-58906633 Msa0173580:intron 30.0%
! AATGTACGGAGTTAATTTTC+AGG + chr1_4:58906628-58906647 Msa0173580:intron 30.0%
GTCTAAACAAAAAAGAGACT+TGG - chr1_4:58906856-58906875 None:intergenic 30.0%
GAGAGATACTAAAATTATCC+AGG - chr1_4:58907176-58907195 None:intergenic 30.0%
!! GGATAATTTTAGTATCTCTC+AGG + chr1_4:58907176-58907195 Msa0173580:CDS 30.0%
AATCAACAAGTAATGTAGAG+AGG - chr1_4:58907214-58907233 None:intergenic 30.0%
! GCATTGAATTTGAGACAAAT+TGG + chr1_4:58907580-58907599 Msa0173580:CDS 30.0%
CAAATTGGAAAATGTCCTTA+CGG + chr1_4:58907595-58907614 Msa0173580:CDS 30.0%
ATACAGCAACATTTGGATAA+AGG - chr1_4:58907712-58907731 None:intergenic 30.0%
CTTATAGATACAGCAACATT+TGG - chr1_4:58907719-58907738 None:intergenic 30.0%
! ATATATTGTTGTTCTTGCTC+AGG - chr1_4:58907779-58907798 None:intergenic 30.0%
TAATTTGAACACATCACCTA+TGG - chr1_4:58907912-58907931 None:intergenic 30.0%
!! ATTGTTGGGTTAGTTTAGTT+TGG + chr1_4:58907931-58907950 Msa0173580:exon 30.0%
! GTTTAATGGTCACTTTCTTT+AGG + chr1_4:58907993-58908012 Msa0173580:three_prime_UTR 30.0%
!! CACTTTCTTTAGGATGAAAT+TGG + chr1_4:58908003-58908022 Msa0173580:three_prime_UTR 30.0%
!! TTCTTTAGGATGAAATTGGA+AGG + chr1_4:58908007-58908026 Msa0173580:three_prime_UTR 30.0%
AGTGAATGAAAATGAGACGT+AGG - chr1_4:58901654-58901673 None:intergenic 35.0%
TGCTACTAGCTAGTAATCAA+AGG + chr1_4:58901821-58901840 Msa0173580:five_prime_UTR 35.0%
AACAAGTGAGGAATGGAAAA+AGG - chr1_4:58901958-58901977 None:intergenic 35.0%
! TGAGTATGGATTATTCAGCA+TGG + chr1_4:58902170-58902189 Msa0173580:intron 35.0%
TGGATTATTCAGCATGGTAT+TGG + chr1_4:58902176-58902195 Msa0173580:intron 35.0%
!! GTTGACACTTTGTTTCCTTT+TGG + chr1_4:58902211-58902230 Msa0173580:intron 35.0%
GTTATTTGTGTATGCACAGA+TGG + chr1_4:58902418-58902437 Msa0173580:intron 35.0%
TTACCAATGTCTCGAATTGA+AGG + chr1_4:58902450-58902469 Msa0173580:CDS 35.0%
AAACAACTTGAAATCCAGTC+GGG - chr1_4:58902479-58902498 None:intergenic 35.0%
CAAACAACTTGAAATCCAGT+CGG - chr1_4:58902480-58902499 None:intergenic 35.0%
! TCTTTCTTTGGAGATCATAG+AGG + chr1_4:58902653-58902672 Msa0173580:intron 35.0%
! CTTTCTTTGGAGATCATAGA+GGG + chr1_4:58902654-58902673 Msa0173580:intron 35.0%
! TTTCTTTGGAGATCATAGAG+GGG + chr1_4:58902655-58902674 Msa0173580:intron 35.0%
! GTTTTCTCATATTTGCTTGG+GGG + chr1_4:58902695-58902714 Msa0173580:intron 35.0%
GTGTAATGAAAGAGCTGAAA+AGG + chr1_4:58902881-58902900 Msa0173580:intron 35.0%
! GAAAAGGAAGTTGTTTCAAG+AGG + chr1_4:58902897-58902916 Msa0173580:intron 35.0%
! CTTGGTCATTTCATTTGTTG+TGG + chr1_4:58903133-58903152 Msa0173580:intron 35.0%
TGTGGTTTACAACAAATGGA+TGG + chr1_4:58903151-58903170 Msa0173580:intron 35.0%
TGAGTTGTCGTTCTGATATA+AGG + chr1_4:58903243-58903262 Msa0173580:intron 35.0%
! AACTGTTGTTGGGAGTATAA+AGG + chr1_4:58903313-58903332 Msa0173580:intron 35.0%
! TGGGAGTATAAAGGTCATTT+CGG + chr1_4:58903322-58903341 Msa0173580:intron 35.0%
GACTTCCAAAATTTCTCTAG+GGG - chr1_4:58903350-58903369 None:intergenic 35.0%
GCAGAACCATATATGTTACA+TGG + chr1_4:58903836-58903855 Msa0173580:CDS 35.0%
ATATATGCAACAAACAAGGG+GGG - chr1_4:58903944-58903963 None:intergenic 35.0%
!!! AATGGTGTGTTATTTTCTCC+AGG + chr1_4:58904039-58904058 Msa0173580:intron 35.0%
TTGAAAAGACAAAGGAGAGA+GGG - chr1_4:58904613-58904632 None:intergenic 35.0%
ATTGAAAAGACAAAGGAGAG+AGG - chr1_4:58904614-58904633 None:intergenic 35.0%
GTAAATAGTGTAATGAGGGA+AGG - chr1_4:58904770-58904789 None:intergenic 35.0%
TAACATACATTGCATGTGCA+TGG - chr1_4:58904828-58904847 None:intergenic 35.0%
!! ATGCTTTCAGGAAGTATCTT+TGG + chr1_4:58904899-58904918 Msa0173580:intron 35.0%
TTCAGTGCTTGAATAATGTC+CGG - chr1_4:58904975-58904994 None:intergenic 35.0%
!! CATTATTCAAGCACTGAAAG+AGG + chr1_4:58904977-58904996 Msa0173580:CDS 35.0%
ATCAATCAATGGAGTGATCA+AGG - chr1_4:58905593-58905612 None:intergenic 35.0%
GCTTGACTACAATCAATCAA+TGG - chr1_4:58905604-58905623 None:intergenic 35.0%
GAGGATACCAAATAAAGGAT+GGG - chr1_4:58905724-58905743 None:intergenic 35.0%
AGAGGATACCAAATAAAGGA+TGG - chr1_4:58905725-58905744 None:intergenic 35.0%
GAGGAAAGGAAAATAAAGAG+AGG - chr1_4:58905743-58905762 None:intergenic 35.0%
! GGTGTTAATAGAGATTAGCT+TGG - chr1_4:58906080-58906099 None:intergenic 35.0%
CTAACATGCTTAATTTCAGC+CGG + chr1_4:58906158-58906177 Msa0173580:intron 35.0%
AAGTCCTTCATCAGTAAAAG+TGG - chr1_4:58906196-58906215 None:intergenic 35.0%
AGAAACATACTTTAGCAGCA+TGG + chr1_4:58906217-58906236 Msa0173580:CDS 35.0%
GAGAGAAAATTACAGCAATG+TGG + chr1_4:58906243-58906262 Msa0173580:CDS 35.0%
CAATGTGGAACTGATAGTAA+TGG + chr1_4:58906258-58906277 Msa0173580:CDS 35.0%
CTTACATCAACAAAACTCCA+AGG - chr1_4:58906294-58906313 None:intergenic 35.0%
ATGTCTTCTAGTCTCTCAAA+AGG - chr1_4:58906446-58906465 None:intergenic 35.0%
GAATGCATAATAGCAACTAC+TGG - chr1_4:58906497-58906516 None:intergenic 35.0%
TATTATGCATTCTTCTTCCG+AGG + chr1_4:58906505-58906524 Msa0173580:CDS 35.0%
AAGCGTTTCAAGAACGATTA+TGG + chr1_4:58906658-58906677 Msa0173580:CDS 35.0%
TTCAATACCTTTGGGTAGAT+GGG + chr1_4:58906711-58906730 Msa0173580:CDS 35.0%
AGTTAGCTCAATACCAATTG+TGG + chr1_4:58906985-58907004 Msa0173580:CDS 35.0%
ATACCAATTGTGGATGATTC+TGG + chr1_4:58906995-58907014 Msa0173580:CDS 35.0%
CTAGATGTGAAATGTATGCT+AGG + chr1_4:58907145-58907164 Msa0173580:CDS 35.0%
ATTAGCATTGTTAGGCCTTA+CGG - chr1_4:58907478-58907497 None:intergenic 35.0%
TTATACTTCCAACGTGTTTG+AGG + chr1_4:58907620-58907639 Msa0173580:CDS 35.0%
!! TGGGTTAGTTTAGTTTGGAA+TGG + chr1_4:58907936-58907955 Msa0173580:exon 35.0%
!! GGGTTAGTTTAGTTTGGAAT+GGG + chr1_4:58907937-58907956 Msa0173580:exon 35.0%
!! TTAGTTTAGTTTGGAATGGG+AGG + chr1_4:58907940-58907959 Msa0173580:exon 35.0%
! TTTAGGATGAAATTGGAAGG+AGG + chr1_4:58908010-58908029 Msa0173580:three_prime_UTR 35.0%
TTAGGATGAAATTGGAAGGA+GGG + chr1_4:58908011-58908030 Msa0173580:three_prime_UTR 35.0%
CAGTAGCATGCATCCATATA+CGG + chr1_4:58901549-58901568 Msa0173580:five_prime_UTR 40.0%
!! GAAAAGCGCTTAACCGTATA+TGG - chr1_4:58901565-58901584 None:intergenic 40.0%
TTGCATTGTGAACTGTGCTA+TGG - chr1_4:58901701-58901720 None:intergenic 40.0%
ATGGAAAAAGGTTGAGGATC+AGG - chr1_4:58901946-58901965 None:intergenic 40.0%
TGAGGAATGGAAAAAGGTTG+AGG - chr1_4:58901952-58901971 None:intergenic 40.0%
CCAAACAAACAAGTGAGGAA+TGG - chr1_4:58901965-58901984 None:intergenic 40.0%
CCATTCCTCACTTGTTTGTT+TGG + chr1_4:58901962-58901981 Msa0173580:CDS 40.0%
TTTCTATGCGGTTCTTTCAC+AGG + chr1_4:58902006-58902025 Msa0173580:CDS 40.0%
TTCTATGCGGTTCTTTCACA+GGG + chr1_4:58902007-58902026 Msa0173580:CDS 40.0%
CTTGACTCCAGGATTTCATA+CGG + chr1_4:58902503-58902522 Msa0173580:CDS 40.0%
CCAAATACCGTATGAAATCC+TGG - chr1_4:58902513-58902532 None:intergenic 40.0%
CCAGGATTTCATACGGTATT+TGG + chr1_4:58902510-58902529 Msa0173580:intron 40.0%
! CTTGCTGTCCTGCTTTATAT+TGG + chr1_4:58902936-58902955 Msa0173580:intron 40.0%
TGTCCTGCTTTATATTGGCA+GGG + chr1_4:58902941-58902960 Msa0173580:intron 40.0%
GGTTTACAACAAATGGATGG+AGG + chr1_4:58903154-58903173 Msa0173580:intron 40.0%
TACAACAAATGGATGGAGGT+TGG + chr1_4:58903158-58903177 Msa0173580:intron 40.0%
!! TTGGACGGAGATTGGTTTAT+AGG + chr1_4:58903182-58903201 Msa0173580:intron 40.0%
!! TGGACGGAGATTGGTTTATA+GGG + chr1_4:58903183-58903202 Msa0173580:intron 40.0%
GGTTTATAGGGAGGAAAGTT+TGG + chr1_4:58903195-58903214 Msa0173580:intron 40.0%
GCAGACAGTTAACTGTTGTT+GGG + chr1_4:58903303-58903322 Msa0173580:intron 40.0%
!! TGTGCAGTATCAGTTTTGTG+TGG + chr1_4:58903739-58903758 Msa0173580:intron 40.0%
!! CAGTATCAGTTTTGTGTGGA+TGG + chr1_4:58903743-58903762 Msa0173580:intron 40.0%
GAGCAGCAGCCATTTATAAA+CGG + chr1_4:58903782-58903801 Msa0173580:CDS 40.0%
AGCAGCAGCCATTTATAAAC+GGG + chr1_4:58903783-58903802 Msa0173580:CDS 40.0%
GGCATCCCATGTAACATATA+TGG - chr1_4:58903845-58903864 None:intergenic 40.0%
TATATGCAACAAACAAGGGG+GGG - chr1_4:58903943-58903962 None:intergenic 40.0%
! TTAACCTTGGAGCTTTTCCA+GGG + chr1_4:58904472-58904491 Msa0173580:intron 40.0%
! TTTTCCAGGGAGTTTTTCCT+AGG + chr1_4:58904485-58904504 Msa0173580:intron 40.0%
TACTGCTTCTCATTTGCTTC+CGG + chr1_4:58904567-58904586 Msa0173580:CDS 40.0%
TGAAAAGACAAAGGAGAGAG+GGG - chr1_4:58904612-58904631 None:intergenic 40.0%
! TCTAGGAAGTGCAAGTTTGT+TGG + chr1_4:58904936-58904955 Msa0173580:CDS 40.0%
GGTTGTACCCATCCTTTATT+TGG + chr1_4:58905714-58905733 Msa0173580:intron 40.0%
CAAGAACCTACAATGAGGAA+AGG - chr1_4:58905757-58905776 None:intergenic 40.0%
TGATGCAAGAACCTACAATG+AGG - chr1_4:58905762-58905781 None:intergenic 40.0%
ACAAACCATGGCATTTGTGA+AGG - chr1_4:58905935-58905954 None:intergenic 40.0%
TCCAGTGACAAAACAAACCA+TGG - chr1_4:58905947-58905966 None:intergenic 40.0%
!! CGATCCACTTTTACTGATGA+AGG + chr1_4:58906189-58906208 Msa0173580:CDS 40.0%
! GTAATGGGAAAGCATATCCT+TGG + chr1_4:58906274-58906293 Msa0173580:CDS 40.0%
GGCTATGCGTATAAATGGTT+TGG + chr1_4:58906601-58906620 Msa0173580:intron 40.0%
GAACGATTATGGTTCTTTGC+CGG + chr1_4:58906669-58906688 Msa0173580:CDS 40.0%
CCAATCGGTATTTGAAGAAC+CGG - chr1_4:58906691-58906710 None:intergenic 40.0%
! ACCGATTGGTTCAATACCTT+TGG + chr1_4:58906702-58906721 Msa0173580:CDS 40.0%
!! CCCAAAGGTATTGAACCAAT+CGG - chr1_4:58906706-58906725 None:intergenic 40.0%
! CCGATTGGTTCAATACCTTT+GGG + chr1_4:58906703-58906722 Msa0173580:CDS 40.0%
GTTCAATACCTTTGGGTAGA+TGG + chr1_4:58906710-58906729 Msa0173580:CDS 40.0%
! TTATTGGATTCCCCCACTTT+TGG - chr1_4:58906739-58906758 None:intergenic 40.0%
CGTTGCAATTGGCTGTTTAT+TGG - chr1_4:58906755-58906774 None:intergenic 40.0%
GCTATCGCTCTAATGAATCA+AGG + chr1_4:58906802-58906821 Msa0173580:CDS 40.0%
GAACCAGAATCATCCACAAT+TGG - chr1_4:58907001-58907020 None:intergenic 40.0%
TCACAGTGATCTTACTGCAT+TGG + chr1_4:58907122-58907141 Msa0173580:intron 40.0%
AATGTATGCTAGGATAAGCC+TGG + chr1_4:58907155-58907174 Msa0173580:CDS 40.0%
!!! ATGAAGTTTTTTTGTGCCGC+AGG + chr1_4:58907558-58907577 Msa0173580:intron 40.0%
TGTCTCAAATTCAATGCCTG+CGG - chr1_4:58907577-58907596 None:intergenic 40.0%
! GTTGGAAGTATAAGTCCGTA+AGG - chr1_4:58907613-58907632 None:intergenic 40.0%
ATGGAACGCTTTGCTAATTC+TGG + chr1_4:58907664-58907683 Msa0173580:CDS 40.0%
TGTTGTTCTTGCTCAGGTAA+AGG - chr1_4:58907773-58907792 None:intergenic 40.0%
! GAATGGGAGGAAAACTGTTT+TGG + chr1_4:58907953-58907972 Msa0173580:three_prime_UTR 40.0%
AAAGGTTGAGGATCAGGTAC+TGG - chr1_4:58901940-58901959 None:intergenic 45.0%
TGAGGCCAAACAAACAAGTG+AGG - chr1_4:58901970-58901989 None:intergenic 45.0%
CACTTGTTTGTTTGGCCTCA+TGG + chr1_4:58901970-58901989 Msa0173580:CDS 45.0%
TTGTTTGTTTGGCCTCATGG+AGG + chr1_4:58901973-58901992 Msa0173580:CDS 45.0%
GAAAGAACCGCATAGAAACG+CGG - chr1_4:58902004-58902023 None:intergenic 45.0%
! GTTGTTTGCTACTTGACTCC+AGG + chr1_4:58902492-58902511 Msa0173580:CDS 45.0%
TTTGGAGATCATAGAGGGGA+TGG + chr1_4:58902659-58902678 Msa0173580:intron 45.0%
TTGGAGATCATAGAGGGGAT+GGG + chr1_4:58902660-58902679 Msa0173580:intron 45.0%
TCATATTTGCTTGGGGGAAG+AGG + chr1_4:58902701-58902720 Msa0173580:intron 45.0%
CTGTCCTGCTTTATATTGGC+AGG + chr1_4:58902940-58902959 Msa0173580:intron 45.0%
CTTTATATTGGCAGGGCAGT+AGG + chr1_4:58902948-58902967 Msa0173580:intron 45.0%
! CAAATGGATGGAGGTTGGTT+TGG + chr1_4:58903163-58903182 Msa0173580:intron 45.0%
!! ACGGAGATTGGTTTATAGGG+AGG + chr1_4:58903186-58903205 Msa0173580:intron 45.0%
! CTTAAGTGCCACTAGTGTGA+CGG + chr1_4:58903281-58903300 Msa0173580:intron 45.0%
GGCAGACAGTTAACTGTTGT+TGG + chr1_4:58903302-58903321 Msa0173580:intron 45.0%
! CGGATCCCCTAGAGAAATTT+TGG + chr1_4:58903342-58903361 Msa0173580:intron 45.0%
!! AGTTTTGTGTGGATGGTGTG+TGG + chr1_4:58903750-58903769 Msa0173580:CDS 45.0%
GCGGTGAACCCGTTTATAAA+TGG - chr1_4:58903794-58903813 None:intergenic 45.0%
CGAAATAGTGTTCACTGTGG+CGG - chr1_4:58903813-58903832 None:intergenic 45.0%
CGCCACAGTGAACACTATTT+CGG + chr1_4:58903811-58903830 Msa0173580:CDS 45.0%
CACCGAAATAGTGTTCACTG+TGG - chr1_4:58903816-58903835 None:intergenic 45.0%
CACAGTGAACACTATTTCGG+TGG + chr1_4:58903814-58903833 Msa0173580:CDS 45.0%
ATATGCAACAAACAAGGGGG+GGG - chr1_4:58903942-58903961 None:intergenic 45.0%
ATGCATGCACATATGCTACC+TGG - chr1_4:58904060-58904079 None:intergenic 45.0%
! CTTAACCTTGGAGCTTTTCC+AGG + chr1_4:58904471-58904490 Msa0173580:intron 45.0%
TATCAAACCTTGCCAGACTC+CGG - chr1_4:58904589-58904608 None:intergenic 45.0%
! AAGTATCTTTGGCTCCTGTG+TGG + chr1_4:58904910-58904929 Msa0173580:CDS 45.0%
! AGTATCTTTGGCTCCTGTGT+GGG + chr1_4:58904911-58904930 Msa0173580:CDS 45.0%
GAGTGATCAAGGATCTACTC+AGG - chr1_4:58905582-58905601 None:intergenic 45.0%
!!! GCCATGGTTTGTTTTGTCAC+TGG + chr1_4:58905943-58905962 Msa0173580:intron 45.0%
AAAGTGGATCGATGACTCTC+CGG - chr1_4:58906180-58906199 None:intergenic 45.0%
ATGCATTCTTCTTCCGAGGA+CGG + chr1_4:58906509-58906528 Msa0173580:CDS 45.0%
GAAGTCATATGTAGCAGCTG+AGG - chr1_4:58906542-58906561 None:intergenic 45.0%
CCGGTTCTTCAAATACCGAT+TGG + chr1_4:58906688-58906707 Msa0173580:CDS 45.0%
AACAGCCAATTGCAACGCTA+AGG + chr1_4:58906758-58906777 Msa0173580:CDS 45.0%
!! TTTGGCCTTAGCGTTGCAAT+TGG - chr1_4:58906766-58906785 None:intergenic 45.0%
!! GCAGCACTAAGAGAAGCATT+TGG - chr1_4:58906784-58906803 None:intergenic 45.0%
TAGCTGTTCTTAGCACAAGG+AGG - chr1_4:58907065-58907084 None:intergenic 45.0%
GTCTAGCTGTTCTTAGCACA+AGG - chr1_4:58907068-58907087 None:intergenic 45.0%
CATCACCACATGCAATGGAT+CGG - chr1_4:58907647-58907666 None:intergenic 45.0%
!! TACAGGTGTTGGAGAAGTTG+TGG + chr1_4:58907847-58907866 Msa0173580:intron 45.0%
GTGCAAGGGATCATTTCCAT+AGG + chr1_4:58907893-58907912 Msa0173580:CDS 45.0%
!!! AACATTTTAAAAAAATTAAT+CGG + chr1_4:58904199-58904218 Msa0173580:intron 5.0%
ATGTCAGGTTCATCAGCTGC+AGG + chr1_4:58901883-58901902 Msa0173580:CDS 50.0%
GGTGAAACCGCGTTTCTATG+CGG + chr1_4:58901994-58902013 Msa0173580:CDS 50.0%
CGGCCTTCAATTCGAGACAT+TGG - chr1_4:58902456-58902475 None:intergenic 50.0%
CAACTTGAAATCCAGTCGGG+CGG - chr1_4:58902476-58902495 None:intergenic 50.0%
CTGCCCTGCCAATATAAAGC+AGG - chr1_4:58902947-58902966 None:intergenic 50.0%
!! TGGATGGAGGTTGGTTTGGA+CGG + chr1_4:58903167-58903186 Msa0173580:intron 50.0%
!! AGGTTGGTTTGGACGGAGAT+TGG + chr1_4:58903174-58903193 Msa0173580:intron 50.0%
TTTGTGTGGATGGTGTGTGG+CGG + chr1_4:58903753-58903772 Msa0173580:CDS 50.0%
AGCTGCAGATGGGATCTACT+AGG - chr1_4:58903866-58903885 None:intergenic 50.0%
TATGCAACAAACAAGGGGGG+GGG - chr1_4:58903941-58903960 None:intergenic 50.0%
AACTCCCTGGAAAAGCTCCA+AGG - chr1_4:58904479-58904498 None:intergenic 50.0%
GTGTCCTAGGAAAAACTCCC+TGG - chr1_4:58904492-58904511 None:intergenic 50.0%
AGAGCAAACTCTGGTGTCCT+AGG - chr1_4:58904505-58904524 None:intergenic 50.0%
GAGACATGCAGAGCAAACTC+TGG - chr1_4:58904514-58904533 None:intergenic 50.0%
TCTCATTTGCTTCCGGAGTC+TGG + chr1_4:58904574-58904593 Msa0173580:CDS 50.0%
CACTTCCTAGAATCCCACAC+AGG - chr1_4:58904927-58904946 None:intergenic 50.0%
! TGTTGGAGTGCTTAGTGCAC+CGG + chr1_4:58904953-58904972 Msa0173580:CDS 50.0%
ACCAGAAACACCATCAGCAG+AGG - chr1_4:58905912-58905931 None:intergenic 50.0%
CTGGTCCTTCACAAATGCCA+TGG + chr1_4:58905927-58905946 Msa0173580:intron 50.0%
!! AGCATCGGGTGCAGGTTTTA+TGG - chr1_4:58905979-58905998 None:intergenic 50.0%
! AGAGATTTAGCATCGGGTGC+AGG - chr1_4:58905987-58906006 None:intergenic 50.0%
CGATCCATTGCATGTGGTGA+TGG + chr1_4:58907645-58907664 Msa0173580:CDS 50.0%
CGTTCCATCACCACATGCAA+TGG - chr1_4:58907652-58907671 None:intergenic 50.0%
!! AGGTGTTGGAGAAGTTGTGG+TGG + chr1_4:58907850-58907869 Msa0173580:intron 50.0%
GGTTCATCAGCTGCAGGTAG+AGG + chr1_4:58901889-58901908 Msa0173580:CDS 55.0%
TCATCAGCTGCAGGTAGAGG+AGG + chr1_4:58901892-58901911 Msa0173580:CDS 55.0%
GCTGCAGGTAGAGGAGGAAA+TGG + chr1_4:58901898-58901917 Msa0173580:CDS 55.0%
AACGCGGTTTCACCTCCATG+AGG - chr1_4:58901988-58902007 None:intergenic 55.0%
ACTGTCTGCCGTCACACTAG+TGG - chr1_4:58903292-58903311 None:intergenic 55.0%
ATGCAACAAACAAGGGGGGG+GGG - chr1_4:58903940-58903959 None:intergenic 55.0%
TTTGCTTCCGGAGTCTGGCA+AGG + chr1_4:58904579-58904598 Msa0173580:CDS 55.0%
TGGCTCCTGTGTGGGATTCT+AGG + chr1_4:58904919-58904938 Msa0173580:CDS 55.0%
!! CCATCAGCAGAGGCACCATT+GGG - chr1_4:58905902-58905921 None:intergenic 55.0%
!! ACCATCAGCAGAGGCACCAT+TGG - chr1_4:58905903-58905922 None:intergenic 55.0%
! GCCTCTGCTGATGGTGTTTC+TGG + chr1_4:58905908-58905927 Msa0173580:intron 55.0%
TTTGGCGCCCATCTACCCAA+AGG - chr1_4:58906721-58906740 None:intergenic 55.0%
GGTAGATGGGCGCCAAAAGT+GGG + chr1_4:58906724-58906743 Msa0173580:CDS 55.0%
GTAGATGGGCGCCAAAAGTG+GGG + chr1_4:58906725-58906744 Msa0173580:CDS 55.0%
TAGATGGGCGCCAAAAGTGG+GGG + chr1_4:58906726-58906745 Msa0173580:CDS 55.0%
GGATCGGACCTCAAACACGT+TGG - chr1_4:58907631-58907650 None:intergenic 55.0%
GAGGTCCGATCCATTGCATG+TGG + chr1_4:58907639-58907658 Msa0173580:CDS 55.0%
TGCAACAAACAAGGGGGGGG+GGG - chr1_4:58903939-58903958 None:intergenic 60.0%
CCCAATGGTGCCTCTGCTGA+TGG + chr1_4:58905899-58905918 Msa0173580:intron 60.0%
CTGAGGAGTTGAGCCGTCCT+CGG - chr1_4:58906525-58906544 None:intergenic 60.0%
GGGTAGATGGGCGCCAAAAG+TGG + chr1_4:58906723-58906742 Msa0173580:CDS 60.0%
! TGGTGGTGAAGTCTGCCTGC+AGG + chr1_4:58907867-58907886 Msa0173580:CDS 60.0%
! TCTGCCTGCAGGAGTGTGCA+AGG + chr1_4:58907878-58907897 Msa0173580:CDS 60.0%
! CTGCCTGCAGGAGTGTGCAA+GGG + chr1_4:58907879-58907898 Msa0173580:CDS 60.0%
GATCCCTTGCACACTCCTGC+AGG - chr1_4:58907885-58907904 None:intergenic 60.0%
CGAATTGAAGGCCGCCCGAC+TGG + chr1_4:58902462-58902481 Msa0173580:CDS 65.0%
AACAAACAAGGGGGGGGGGG+GGG - chr1_4:58903936-58903955 None:intergenic 65.0%
CAACAAACAAGGGGGGGGGG+GGG - chr1_4:58903937-58903956 None:intergenic 65.0%
GCAACAAACAAGGGGGGGGG+GGG - chr1_4:58903938-58903957 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 58901472 58908117 58901472 ID=Msa0173580;Name=Msa0173580
chr1_4 mRNA 58901472 58908117 58901472 ID=Msa0173580-mRNA-1;Parent=Msa0173580;Name=Msa0173580-mRNA-1;_AED=0.13;_eAED=0.13;_QI=411|1|1|1|1|1|13|174|480
chr1_4 exon 58901472 58902028 58901472 ID=Msa0173580-mRNA-1:exon:18366;Parent=Msa0173580-mRNA-1
chr1_4 exon 58902437 58902524 58902437 ID=Msa0173580-mRNA-1:exon:18367;Parent=Msa0173580-mRNA-1
chr1_4 exon 58903746 58903913 58903746 ID=Msa0173580-mRNA-1:exon:18368;Parent=Msa0173580-mRNA-1
chr1_4 exon 58904493 58904600 58904493 ID=Msa0173580-mRNA-1:exon:18369;Parent=Msa0173580-mRNA-1
chr1_4 exon 58904697 58904756 58904697 ID=Msa0173580-mRNA-1:exon:18370;Parent=Msa0173580-mRNA-1
chr1_4 exon 58904909 58904998 58904909 ID=Msa0173580-mRNA-1:exon:18371;Parent=Msa0173580-mRNA-1
chr1_4 exon 58906177 58906308 58906177 ID=Msa0173580-mRNA-1:exon:18372;Parent=Msa0173580-mRNA-1
chr1_4 exon 58906437 58906581 58906437 ID=Msa0173580-mRNA-1:exon:18373;Parent=Msa0173580-mRNA-1
chr1_4 exon 58906650 58906823 58906650 ID=Msa0173580-mRNA-1:exon:18374;Parent=Msa0173580-mRNA-1
chr1_4 exon 58906981 58907044 58906981 ID=Msa0173580-mRNA-1:exon:18375;Parent=Msa0173580-mRNA-1
chr1_4 exon 58907128 58907197 58907128 ID=Msa0173580-mRNA-1:exon:18376;Parent=Msa0173580-mRNA-1
chr1_4 exon 58907580 58907685 58907580 ID=Msa0173580-mRNA-1:exon:18377;Parent=Msa0173580-mRNA-1
chr1_4 exon 58907852 58908117 58907852 ID=Msa0173580-mRNA-1:exon:18378;Parent=Msa0173580-mRNA-1
chr1_4 five_prime_UTR 58901472 58901882 58901472 ID=Msa0173580-mRNA-1:five_prime_utr;Parent=Msa0173580-mRNA-1
chr1_4 CDS 58901883 58902028 58901883 ID=Msa0173580-mRNA-1:cds;Parent=Msa0173580-mRNA-1
chr1_4 CDS 58902437 58902524 58902437 ID=Msa0173580-mRNA-1:cds;Parent=Msa0173580-mRNA-1
chr1_4 CDS 58903746 58903913 58903746 ID=Msa0173580-mRNA-1:cds;Parent=Msa0173580-mRNA-1
chr1_4 CDS 58904493 58904600 58904493 ID=Msa0173580-mRNA-1:cds;Parent=Msa0173580-mRNA-1
chr1_4 CDS 58904697 58904756 58904697 ID=Msa0173580-mRNA-1:cds;Parent=Msa0173580-mRNA-1
chr1_4 CDS 58904909 58904998 58904909 ID=Msa0173580-mRNA-1:cds;Parent=Msa0173580-mRNA-1
chr1_4 CDS 58906177 58906308 58906177 ID=Msa0173580-mRNA-1:cds;Parent=Msa0173580-mRNA-1
chr1_4 CDS 58906437 58906581 58906437 ID=Msa0173580-mRNA-1:cds;Parent=Msa0173580-mRNA-1
chr1_4 CDS 58906650 58906823 58906650 ID=Msa0173580-mRNA-1:cds;Parent=Msa0173580-mRNA-1
chr1_4 CDS 58906981 58907044 58906981 ID=Msa0173580-mRNA-1:cds;Parent=Msa0173580-mRNA-1
chr1_4 CDS 58907128 58907197 58907128 ID=Msa0173580-mRNA-1:cds;Parent=Msa0173580-mRNA-1
chr1_4 CDS 58907580 58907685 58907580 ID=Msa0173580-mRNA-1:cds;Parent=Msa0173580-mRNA-1
chr1_4 CDS 58907852 58907943 58907852 ID=Msa0173580-mRNA-1:cds;Parent=Msa0173580-mRNA-1
chr1_4 three_prime_UTR 58907944 58908117 58907944 ID=Msa0173580-mRNA-1:three_prime_utr;Parent=Msa0173580-mRNA-1
Gene Sequence

>Msa0173580

ATGTCAGGTTCATCAGCTGCAGGTAGAGGAGGAAATGGAAGTAGTAGTGATGTACCAGTACCTGATCCTCAACCTTTTTCCATTCCTCACTTGTTTGTTTGGCCTCATGGAGGTGAAACCGCGTTTCTATGCGGTTCTTTCACAGGATGGTCAACAAATTTACCAATGTCTCGAATTGAAGGCCGCCCGACTGGATTTCAAGTTGTTTGCTACTTGACTCCAGGATTTCATACGTATCAGTTTTGTGTGGATGGTGTGTGGCGGCATGATGAGCAGCAGCCATTTATAAACGGGTTCACCGCCACAGTGAACACTATTTCGGTGGCAGAACCATATATGTTACATGGGATGCCTAGTAGATCCCATCTGCAGCTTGAAAATATTAATGTCACTAGACACATGGGAGTTTTTCCTAGGACACCAGAGTTTGCTCTGCATGTCTCGCGCTATCACATATATAAATTTATGTCATCGAATACTGCTTCTCATTTGCTTCCGGAGTCTGGCAAGGTATTTGTCTTGAATATAGATTTATCACTTCAGCAAGCATTGCATATTCTATATGAACAGGAAGTATCTTTGGCTCCTGTGTGGGATTCTAGGAAGTGCAAGTTTGTTGGAGTGCTTAGTGCACCGGACATTATTCAAGCACTGAAAGAGCCGGAGAGTCATCGATCCACTTTTACTGATGAAGGACTTGAGAAACATACTTTAGCAGCATGGATAGAGAGAAAATTACAGCAATGTGGAACTGATAGTAATGGGAAAGCATATCCTTGGAGTTTTGTTGATGCTAGGCCTTTTGAGAGACTAGAAGACATCGCTTTAAAATTTTTGCAATGCAAGGTGCCAGTAGTTGCTATTATGCATTCTTCTTCCGAGGACGGCTCAACTCCTCAGCTGCTACATATGACTTCTCGCTCAGAAATACTAAAATGTATATGCAAGCGTTTCAAGAACGATTATGGTTCTTTGCCGGTTCTTCAAATACCGATTGGTTCAATACCTTTGGGTAGATGGGCGCCAAAAGTGGGGGAATCCAATAAACAGCCAATTGCAACGCTAAGGCCAAATGCTTCTCTTAGTGCTGCTATCGCTCTAATGAATCAAGCTGAAGTTAGCTCAATACCAATTGTGGATGATTCTGGTTCATTATATGATGTATATTCAAGAAGTGATCTTACTGCATTGGCTAGATGTGAAATGTATGCTAGGATAAGCCTGGATAATTTTAGTATCTCTCAGGCATTGAATTTGAGACAAATTGGAAAATGTCCTTACGGACTTATACTTCCAACGTGTTTGAGGTCCGATCCATTGCATGTGGTGATGGAACGCTTTGCTAATTCTGGTGTTGGAGAAGTTGTGGTGGTGAAGTCTGCCTGCAGGAGTGTGCAAGGGATCATTTCCATAGGTGATGTGTTCAAATTATTGTTGGGTTAG

Protein sequence

>Msa0173580

MSGSSAAGRGGNGSSSDVPVPDPQPFSIPHLFVWPHGGETAFLCGSFTGWSTNLPMSRIEGRPTGFQVVCYLTPGFHTYQFCVDGVWRHDEQQPFINGFTATVNTISVAEPYMLHGMPSRSHLQLENINVTRHMGVFPRTPEFALHVSRYHIYKFMSSNTASHLLPESGKVFVLNIDLSLQQALHILYEQEVSLAPVWDSRKCKFVGVLSAPDIIQALKEPESHRSTFTDEGLEKHTLAAWIERKLQQCGTDSNGKAYPWSFVDARPFERLEDIALKFLQCKVPVVAIMHSSSEDGSTPQLLHMTSRSEILKCICKRFKNDYGSLPVLQIPIGSIPLGRWAPKVGESNKQPIATLRPNASLSAAIALMNQAEVSSIPIVDDSGSLYDVYSRSDLTALARCEMYARISLDNFSISQALNLRQIGKCPYGLILPTCLRSDPLHVVMERFANSGVGEVVVVKSACRSVQGIISIGDVFKLLLG*