AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0189250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0189250 MtrunA17_Chr2g0278271 96.509 401 13 1 1 401 1 400 0.0 792
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0189250 AT1G33270.1 67.222 360 97 3 40 390 13 360 2.73e-174 491
Msa0189250 AT1G33270.2 66.899 287 74 3 40 317 13 287 4.01e-134 386

Find 144 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTTAATATTTACAAAAT+AGG 0.150928 2_1:+4660447 Msa0189250:three_prime_UTR
AGACATTTGGAATAGTTATT+TGG 0.195790 2_1:+4660663 Msa0189250:three_prime_UTR
CAATTATGCTACCCTTTAAA+TGG 0.227483 2_1:+4660270 Msa0189250:three_prime_UTR
TTAAGGTGATGTCCATTTAA+AGG 0.227505 2_1:-4660282 None:intergenic
TTGCTGTAACACAGCTTCTT+TGG 0.250898 2_1:+4658814 Msa0189250:CDS
CTTCTCTTTCCTTATCATCT+TGG 0.258626 2_1:+4656420 Msa0189250:CDS
GTCTGTGCTGTAGTTGCTTC+TGG 0.266151 2_1:+4657556 Msa0189250:CDS
TATTTAATATTTACAAAATA+GGG 0.273161 2_1:+4660448 Msa0189250:three_prime_UTR
CTCTTCTCCGTTCACGCAAA+TGG 0.277244 2_1:+4655933 Msa0189250:exon
TATTCAAAATGGTTACATTA+AGG 0.286836 2_1:+4656458 Msa0189250:CDS
CTTGACCGACTCTTTGAGTT+TGG 0.293311 2_1:+4660103 Msa0189250:CDS
TTTACTTCTTCCTTTATTCC+AGG 0.293412 2_1:+4658897 Msa0189250:CDS
TCTGCAGTTCCTAACTTCTA+AGG 0.302354 2_1:+4660322 Msa0189250:three_prime_UTR
TTTGATAGCTACTAAAATAT+TGG 0.304460 2_1:+4657597 Msa0189250:CDS
GATATCTTGATGCTGCTGTC+TGG 0.307350 2_1:+4660125 Msa0189250:CDS
AAAACACTTGTGTAATCATT+TGG 0.318930 2_1:+4660702 Msa0189250:three_prime_UTR
CCTCCCTCCAATGATAATTA+AGG 0.321771 2_1:-4660299 None:intergenic
AGATTCAACCTGATGTGATT+TGG 0.334321 2_1:+4656316 Msa0189250:CDS
TTGGAGACCCAGGGGTTTGT+TGG 0.335292 2_1:+4658833 Msa0189250:CDS
CATTGTACAATAGCACATTA+TGG 0.336247 2_1:+4660213 Msa0189250:exon
AGAGAGAATTGGTGCTGTTA+TGG 0.341595 2_1:+4656287 Msa0189250:CDS
TCTTCTCCGTTCACGCAAAT+GGG 0.342480 2_1:+4655934 Msa0189250:exon
CGAAATCGTTTATGCATTGA+TGG 0.343466 2_1:+4659044 Msa0189250:CDS
GAACTTACAAAAGTAGATTA+TGG 0.347245 2_1:+4660727 Msa0189250:three_prime_UTR
AACAAATCACCCTGGAATAA+AGG 0.350115 2_1:-4658907 None:intergenic
GACATCACCTTAATTATCAT+TGG 0.360150 2_1:+4660292 Msa0189250:three_prime_UTR
TAAGGTGATGTCCATTTAAA+GGG 0.361735 2_1:-4660281 None:intergenic
CGAAACATCGTAGCTGGCTT+TGG 0.362210 2_1:-4659023 None:intergenic
GACGTTCATATAAGATCTAA+TGG 0.364869 2_1:+4658481 Msa0189250:CDS
TTTGTCATCCATAGGGAAAC+TGG 0.381622 2_1:-4660533 None:intergenic
CCATTAGCTGGTTCTTCTGC+TGG 0.395305 2_1:+4657526 Msa0189250:CDS
CCCTATGGATGACAAAGTTA+TGG 0.399539 2_1:+4660540 Msa0189250:three_prime_UTR
TGCATTGATGAGATCTTCCT+TGG 0.414782 2_1:-4658871 None:intergenic
TTGTAAACTAAGGAGACATT+TGG 0.421306 2_1:+4660650 Msa0189250:three_prime_UTR
GGGGACTGCATTTCGGCTGG+GGG 0.428347 2_1:+4657639 Msa0189250:CDS
GATTCAACCTGATGTGATTT+GGG 0.433059 2_1:+4656317 Msa0189250:CDS
GAGACCCAGGGGTTTGTTGG+TGG 0.434625 2_1:+4658836 Msa0189250:CDS
GTCACCGGAGAACTCTTCTT+AGG 0.440629 2_1:+4656171 Msa0189250:CDS
TGAGATGAAGAAGGAGGAGA+TGG 0.442668 2_1:-4655977 None:intergenic
TCCTTCTCCCTCTCCTCCGC+CGG 0.444696 2_1:+4656125 Msa0189250:CDS
GATCTTATATGAACGTCATC+TGG 0.445330 2_1:-4658475 None:intergenic
AAGGAGGAGATGGATGGAGT+TGG 0.447255 2_1:-4655967 None:intergenic
TGCAATCCCATACGACCTGC+TGG 0.448491 2_1:-4659900 None:intergenic
AGAAAAGTTGTAACTACTCC+TGG 0.458445 2_1:+4656375 Msa0189250:CDS
CAGGAAACCACGCCATTAGC+TGG 0.458530 2_1:+4657514 Msa0189250:intron
CTCTGCTCCCAAATCACATC+AGG 0.461065 2_1:-4656324 None:intergenic
AGAGTGAGGTTAACGTCGTT+AGG 0.461158 2_1:-4656045 None:intergenic
ATTTATAGCCAGTTTCCCTA+TGG 0.461255 2_1:+4660525 Msa0189250:three_prime_UTR
TATTGTGATAGAATTCTTGC+TGG 0.465304 2_1:+4660387 Msa0189250:three_prime_UTR
TACAATGGGAAAGAGAGAAT+TGG 0.465947 2_1:+4656276 Msa0189250:CDS
GATACTACTGCTCCTGCATT+CGG 0.466890 2_1:+4660184 Msa0189250:CDS
AGGAGAGGGAGAAGGAGGTG+TGG 0.469218 2_1:-4656118 None:intergenic
TGAGCAACACCAAGATGATA+AGG 0.474367 2_1:-4656429 None:intergenic
TTACTTCTTCCTTTATTCCA+GGG 0.476147 2_1:+4658898 Msa0189250:CDS
CGTCGTTAGGGAAACGGAAA+CGG 0.485989 2_1:-4656032 None:intergenic
ATATCTTGATGCTGCTGTCT+GGG 0.486047 2_1:+4660126 Msa0189250:CDS
ATGAAGAAGGAGGAGATGGA+TGG 0.489641 2_1:-4655973 None:intergenic
GCGTTCTCGGGATTACAATC+TGG 0.498185 2_1:-4659939 None:intergenic
AAATATTGGCTGAAGATTGT+CGG 0.498682 2_1:+4657611 Msa0189250:CDS
CCAGCAGAAGAACCAGCTAA+TGG 0.499103 2_1:-4657526 None:intergenic
ACCGACATCTGCAGCACAAA+CGG 0.500017 2_1:+4659088 Msa0189250:CDS
TTGGGGAAAATTGTAAACTA+AGG 0.504675 2_1:+4660640 Msa0189250:three_prime_UTR
ATGCACCCCATTTGCGTGAA+CGG 0.505081 2_1:-4655940 None:intergenic
CGATTTCGAAACATCGTAGC+TGG 0.507412 2_1:-4659029 None:intergenic
GAAATCGTTTATGCATTGAT+GGG 0.509760 2_1:+4659045 Msa0189250:CDS
ATCACCTTAATTATCATTGG+AGG 0.510078 2_1:+4660295 Msa0189250:three_prime_UTR
TGGCTGAAGATTGTCGGAAG+GGG 0.511558 2_1:+4657617 Msa0189250:CDS
CACAGCTTCTTTGGAGACCC+AGG 0.512275 2_1:+4658823 Msa0189250:CDS
AAAATTCAGGGATACCTGAC+GGG 0.513793 2_1:-4659970 None:intergenic
GTTCAACGGTAATGTACAAT+GGG 0.514808 2_1:+4656262 Msa0189250:CDS
AATTTGTTTCTGAATATCAC+AGG 0.517161 2_1:-4660589 None:intergenic
CGTATGGGATTGCAAGGGAT+AGG 0.518266 2_1:+4659909 Msa0189250:CDS
CTGATCCACCAACAAACCCC+TGG 0.519698 2_1:-4658841 None:intergenic
ACAATGCTATTTCCGAATGC+AGG 0.521454 2_1:-4660196 None:intergenic
TTGAGAAGGTGAGATGAAGA+AGG 0.521623 2_1:-4655986 None:intergenic
GAGTGAGGTTAACGTCGTTA+GGG 0.521955 2_1:-4656044 None:intergenic
ACGTTCATATAAGATCTAAT+GGG 0.522976 2_1:+4658482 Msa0189250:CDS
GGTGGATCAGTTTGATTCCA+AGG 0.522998 2_1:+4658854 Msa0189250:CDS
AGATCTAATGGGAGAGTTCG+AGG 0.526204 2_1:+4658493 Msa0189250:CDS
AAATCCTTCGCCGTCGTCAC+CGG 0.526789 2_1:+4656156 Msa0189250:CDS
AGAAGGTGAGATGAAGAAGG+AGG 0.531067 2_1:-4655983 None:intergenic
GTATGGGATTGCAAGGGATA+GGG 0.532482 2_1:+4659910 Msa0189250:CDS
AGTTGCTTCTGGAGCTAGCA+TGG 0.537640 2_1:+4657567 Msa0189250:CDS
GGCGGAGGAGAGGGAGAAGG+AGG 0.539404 2_1:-4656123 None:intergenic
TTGTACATTACCGTTGAACT+CGG 0.542685 2_1:-4656258 None:intergenic
CTGCAGTTCCTAACTTCTAA+GGG 0.543653 2_1:+4660323 Msa0189250:three_prime_UTR
CCATAACTTTGTCATCCATA+GGG 0.549421 2_1:-4660540 None:intergenic
ATTGTGATAGAATTCTTGCT+GGG 0.549682 2_1:+4660388 Msa0189250:three_prime_UTR
TCGCCACCGGAGTCGATTCG+CGG 0.550243 2_1:-4656218 None:intergenic
TCCGGCGGAGGAGAGGGAGA+AGG 0.552294 2_1:-4656126 None:intergenic
TATACCTAAGAAGAGTTCTC+CGG 0.556170 2_1:-4656175 None:intergenic
GGTTAACGTCGTTAGGGAAA+CGG 0.558708 2_1:-4656038 None:intergenic
GGCTGAAGATTGTCGGAAGG+GGG 0.561976 2_1:+4657618 Msa0189250:CDS
TTAATATTTACAAAATAGGG+TGG 0.562220 2_1:+4660451 Msa0189250:three_prime_UTR
TCAAGAATTACATCTTCTGC+TGG 0.562958 2_1:-4660085 None:intergenic
GCAGGTCGTATGGGATTGCA+AGG 0.563172 2_1:+4659903 Msa0189250:CDS
CAACAGCCGCGAATCGACTC+CGG 0.569194 2_1:+4656212 Msa0189250:CDS
CTGAAGATTGTCGGAAGGGG+GGG 0.569435 2_1:+4657620 Msa0189250:CDS
TGATGCTGCTGTCTGGGCAA+AGG 0.572016 2_1:+4660132 Msa0189250:CDS
GTTCACGCAAATGGGGTGCA+TGG 0.574426 2_1:+4655942 Msa0189250:exon
GCTGAAGATTGTCGGAAGGG+GGG 0.578978 2_1:+4657619 Msa0189250:CDS
ACAGCTTCTTTGGAGACCCA+GGG 0.582345 2_1:+4658824 Msa0189250:CDS
AAATCGTTTATGCATTGATG+GGG 0.582936 2_1:+4659046 Msa0189250:CDS
CTTCTCCGTTCACGCAAATG+GGG 0.585899 2_1:+4655935 Msa0189250:exon
AACGGAAAGTGTGACGGTAA+CGG 0.587248 2_1:-4656014 None:intergenic
GAATTCTCGAACATCGCCAC+CGG 0.592760 2_1:-4656231 None:intergenic
TCACCTTAATTATCATTGGA+GGG 0.593314 2_1:+4660296 Msa0189250:three_prime_UTR
AGAATTGAATTGAGTACGCG+TGG 0.594620 2_1:-4656073 None:intergenic
GAGAGTGAAAGATATTGAAG+CGG 0.595167 2_1:+4656344 Msa0189250:CDS
GCCATAACTTTGTCATCCAT+AGG 0.597023 2_1:-4660541 None:intergenic
AGTTCAACGGTAATGTACAA+TGG 0.599667 2_1:+4656261 Msa0189250:CDS
CATTTGCGTGAACGGAGAAG+AGG 0.602328 2_1:-4655932 None:intergenic
TTCTCCGGTGACGACGGCGA+AGG 0.603111 2_1:-4656160 None:intergenic
ACCGTTTGTGCTGCAGATGT+CGG 0.603463 2_1:-4659089 None:intergenic
GAAGAGTTCTCCGGTGACGA+CGG 0.608010 2_1:-4656166 None:intergenic
GATATCCAAACTCAAAGAGT+CGG 0.608281 2_1:-4660108 None:intergenic
TTGGCTGAAGATTGTCGGAA+GGG 0.608456 2_1:+4657616 Msa0189250:CDS
TGATCCACCAACAAACCCCT+GGG 0.611703 2_1:-4658840 None:intergenic
TGTGATAGAATTCTTGCTGG+GGG 0.611759 2_1:+4660390 Msa0189250:three_prime_UTR
AACGGAAACGGAAAGTGTGA+CGG 0.617926 2_1:-4656020 None:intergenic
CGGTAACGGTGAGCTTGAGA+AGG 0.618269 2_1:-4656000 None:intergenic
ATTGGCTGAAGATTGTCGGA+AGG 0.624133 2_1:+4657615 Msa0189250:CDS
ACGAGGGAAAGTCGTCATCG+TGG 0.633479 2_1:+4655829 Msa0189250:five_prime_UTR
AACCAATCAGAAAAGAAGAG+AGG 0.638336 2_1:+4655883 Msa0189250:five_prime_UTR
TTGTGATAGAATTCTTGCTG+GGG 0.644875 2_1:+4660389 Msa0189250:three_prime_UTR
CAGCCGCGAATCGACTCCGG+TGG 0.645005 2_1:+4656215 Msa0189250:CDS
TGAAAGATATTGAAGCGGAA+CGG 0.645350 2_1:+4656349 Msa0189250:CDS
GAATTGAATTGAGTACGCGT+GGG 0.647481 2_1:-4656072 None:intergenic
AATCGTTTATGCATTGATGG+GGG 0.653176 2_1:+4659047 Msa0189250:CDS
GTGGAGTGTTGTTGAACGCG+TGG 0.661845 2_1:-4656099 None:intergenic
AATTGAATTGAGTACGCGTG+GGG 0.667275 2_1:-4656071 None:intergenic
GAGTGTTGTTGAACGCGTGG+TGG 0.667602 2_1:-4656096 None:intergenic
CAGCTTCTTTGGAGACCCAG+GGG 0.669446 2_1:+4658825 Msa0189250:CDS
CCTTAATTATCATTGGAGGG+AGG 0.669627 2_1:+4660299 Msa0189250:three_prime_UTR
GAATTCGAATCCGAGTTCAA+CGG 0.674301 2_1:+4656248 Msa0189250:CDS
GTTTGTGCTGCAGATGTCGG+TGG 0.676596 2_1:-4659086 None:intergenic
TTATGGATTGAAGATGCATG+AGG 0.686616 2_1:+4660230 Msa0189250:three_prime_UTR
TACGCGTGGGGAGAAGAGTG+AGG 0.688567 2_1:-4656059 None:intergenic
AAATTCAGGGATACCTGACG+GGG 0.689461 2_1:-4659969 None:intergenic
GTGATAGAATTCTTGCTGGG+GGG 0.689880 2_1:+4660391 Msa0189250:three_prime_UTR
GCAGCAGAGAAACTAAAACC+AGG 0.702246 2_1:-4656393 None:intergenic
AGAAGAACCAGCTAATGGCG+TGG 0.703301 2_1:-4657521 None:intergenic
CAGGTCGTATGGGATTGCAA+GGG 0.713449 2_1:+4659904 Msa0189250:CDS
AATTCAGGGATACCTGACGG+GGG 0.776486 2_1:-4659968 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAGTTATGAATTAAAAAA+AGG - chr2_1:4656492-4656511 None:intergenic 10.0%
!!! TTTTTAATTCATAACTATTA+AGG + chr2_1:4656493-4656512 Msa0189250:intron 10.0%
!! AAATTACATTTATAATTACA+TGG + chr2_1:4658666-4658685 Msa0189250:intron 10.0%
!! TCCAAAAAAAAAAAATTATA+AGG - chr2_1:4659189-4659208 None:intergenic 10.0%
!! AATAAGTTATTTATTCAAAC+AGG + chr2_1:4656833-4656852 Msa0189250:intron 15.0%
!! ATAAGTTATTTATTCAAACA+GGG + chr2_1:4656834-4656853 Msa0189250:intron 15.0%
!!! TTTTTTTTTTTGGATTCTAT+TGG + chr2_1:4658047-4658066 Msa0189250:intron 15.0%
!!! TTTAAAAGATATAACTGTTT+TGG + chr2_1:4658153-4658172 Msa0189250:intron 15.0%
!!! TTAAAAGATATAACTGTTTT+GGG + chr2_1:4658154-4658173 Msa0189250:intron 15.0%
!! GAGATATATATAATTTCATT+TGG + chr2_1:4658394-4658413 Msa0189250:intron 15.0%
!! AATTAAACCAAAAGAAAATA+AGG + chr2_1:4658701-4658720 Msa0189250:intron 15.0%
!!! ATTTTTATTTAGTTACTTGT+TGG + chr2_1:4659112-4659131 Msa0189250:intron 15.0%
!!! GCCTTATAATTTTTTTTTTT+TGG + chr2_1:4659185-4659204 Msa0189250:intron 15.0%
!! AGATTATCTAAATATTGTAT+GGG - chr2_1:4659441-4659460 None:intergenic 15.0%
!! TAGATTATCTAAATATTGTA+TGG - chr2_1:4659442-4659461 None:intergenic 15.0%
!!! CAATGTTTTAAATACTATAA+AGG - chr2_1:4659570-4659589 None:intergenic 15.0%
!! TATTCAAAATGGTTACATTA+AGG + chr2_1:4656458-4656477 Msa0189250:CDS 20.0%
!! AGTTATGAATTAAAAAAAGG+AGG - chr2_1:4656489-4656508 None:intergenic 20.0%
!! TAAGTTATTTATTCAAACAG+GGG + chr2_1:4656835-4656854 Msa0189250:intron 20.0%
!! TATCTTTGTATGTTTATCTA+GGG + chr2_1:4657133-4657152 Msa0189250:intron 20.0%
!! CAATAACAAAAACATTCAAT+TGG - chr2_1:4657162-4657181 None:intergenic 20.0%
!!! TTTTGTTATTGAAATAGAAC+TGG + chr2_1:4657171-4657190 Msa0189250:intron 20.0%
!! TATCATTGTATGTTTATCTA+GGG + chr2_1:4657212-4657231 Msa0189250:intron 20.0%
!!! AGTTATGTAATCTACTATTT+TGG + chr2_1:4657420-4657439 Msa0189250:intron 20.0%
!!! TTTGATAGCTACTAAAATAT+TGG + chr2_1:4657597-4657616 Msa0189250:CDS 20.0%
!!! ACTTGAAGTTTAACTTTTAT+TGG + chr2_1:4657805-4657824 Msa0189250:intron 20.0%
!!! CTTGAAGTTTAACTTTTATT+GGG + chr2_1:4657806-4657825 Msa0189250:intron 20.0%
!!! TTGAAGTTTAACTTTTATTG+GGG + chr2_1:4657807-4657826 Msa0189250:intron 20.0%
!!! AAAAATAGCTAAGCTTTTTT+GGG - chr2_1:4657865-4657884 None:intergenic 20.0%
!!! AAAAAATAGCTAAGCTTTTT+TGG - chr2_1:4657866-4657885 None:intergenic 20.0%
!! AGAATCCAAAAAAAAAAAAG+TGG - chr2_1:4658045-4658064 None:intergenic 20.0%
!! TACTTAATAACTTTCAAGAT+AGG - chr2_1:4658090-4658109 None:intergenic 20.0%
!! AGTTATTAAGTATCAGTTAT+TGG + chr2_1:4658098-4658117 Msa0189250:intron 20.0%
!!! ATATCTTTTAAAAATGCTAG+AGG - chr2_1:4658145-4658164 None:intergenic 20.0%
!!! TAAAAGATATAACTGTTTTG+GGG + chr2_1:4658155-4658174 Msa0189250:intron 20.0%
!! GAAATTATATATATCTCGTA+AGG - chr2_1:4658391-4658410 None:intergenic 20.0%
!!! AGTTATTTTCATTATAGAAC+TGG + chr2_1:4658539-4658558 Msa0189250:intron 20.0%
!! CACAAAATAATCAATCAATT+GGG - chr2_1:4659149-4659168 None:intergenic 20.0%
!! TCACAAAATAATCAATCAAT+TGG - chr2_1:4659150-4659169 None:intergenic 20.0%
!! AATGCATAGAACTAAATTAA+TGG - chr2_1:4659237-4659256 None:intergenic 20.0%
!! TATTACTCTTCATCAATAAT+TGG - chr2_1:4659465-4659484 None:intergenic 20.0%
!! ATGAAGAGTAATAAACTTTA+GGG + chr2_1:4659472-4659491 Msa0189250:intron 20.0%
!! AGGTATTAAAGATAAATTGA+TGG + chr2_1:4659622-4659641 Msa0189250:intron 20.0%
!! AAAATAATTCTAACTTTCTC+AGG + chr2_1:4659650-4659669 Msa0189250:intron 20.0%
!! TTAATATTTACAAAATAGGG+TGG + chr2_1:4660451-4660470 Msa0189250:three_prime_UTR 20.0%
!! GCTCATTTTCTTATTCAAAA+TGG + chr2_1:4656447-4656466 Msa0189250:CDS 25.0%
!! ATAACTATTAAGGACTTGTT+TGG + chr2_1:4656503-4656522 Msa0189250:intron 25.0%
! TCACTTTCATAAATTACTAC+TGG - chr2_1:4656663-4656682 None:intergenic 25.0%
! AGCTTATGAAAATAGCTTAT+AGG + chr2_1:4656963-4656982 Msa0189250:intron 25.0%
!! ATTGAGGTTTTTATCAAAAC+AGG + chr2_1:4657081-4657100 Msa0189250:intron 25.0%
! GTATCTTTGTATGTTTATCT+AGG + chr2_1:4657132-4657151 Msa0189250:intron 25.0%
! GTATCATTGTATGTTTATCT+AGG + chr2_1:4657211-4657230 Msa0189250:intron 25.0%
!!! CATGTAATTAGTTTTGACAT+TGG + chr2_1:4657251-4657270 Msa0189250:intron 25.0%
! AGTATACCAACAAGAAAATA+CGG - chr2_1:4657386-4657405 None:intergenic 25.0%
!! AATAAGATCCTTGTGAATTT+TGG + chr2_1:4657927-4657946 Msa0189250:intron 25.0%
!! ATAAGATCCTTGTGAATTTT+GGG + chr2_1:4657928-4657947 Msa0189250:intron 25.0%
!!! CAATGCCACTTTTTTTTTTT+TGG + chr2_1:4658037-4658056 Msa0189250:intron 25.0%
! ACGTTCATATAAGATCTAAT+GGG + chr2_1:4658482-4658501 Msa0189250:CDS 25.0%
! TTCACCTTATTATTTATGAC+TGG + chr2_1:4658594-4658613 Msa0189250:intron 25.0%
! TCTTCCAGTCATAAATAATA+AGG - chr2_1:4658601-4658620 None:intergenic 25.0%
! CTTGATGAGAAAAAACATAT+TGG + chr2_1:4658629-4658648 Msa0189250:intron 25.0%
!!! ACAGAATCCTTATTTTCTTT+TGG - chr2_1:4658711-4658730 None:intergenic 25.0%
! TTGTTAGTATAGTATTACCT+TGG + chr2_1:4658925-4658944 Msa0189250:intron 25.0%
! TATGCATTTATCATTTGAGA+TGG + chr2_1:4659249-4659268 Msa0189250:intron 25.0%
! AATTCTTTCATTGGAATACT+TGG + chr2_1:4659272-4659291 Msa0189250:intron 25.0%
! GATGAAGAGTAATAAACTTT+AGG + chr2_1:4659471-4659490 Msa0189250:intron 25.0%
!! TCAGTTTCAAAATGAACTTT+TGG + chr2_1:4659538-4659557 Msa0189250:intron 25.0%
! AAAGCGATAAATGTTTATCA+AGG - chr2_1:4659858-4659877 None:intergenic 25.0%
! ATAAACATTTATCGCTTTAC+AGG + chr2_1:4659860-4659879 Msa0189250:intron 25.0%
!! AATCATTTCAGCTTTTGAAT+TGG + chr2_1:4660053-4660072 Msa0189250:intron 25.0%
!! ATCATTTCAGCTTTTGAATT+GGG + chr2_1:4660054-4660073 Msa0189250:intron 25.0%
!!! TGAAATCTCAGATTTTTTTG+TGG + chr2_1:4660484-4660503 Msa0189250:three_prime_UTR 25.0%
!!! AATTTGTTTCTGAATATCAC+AGG - chr2_1:4660592-4660611 None:intergenic 25.0%
!! AGACATTTGGAATAGTTATT+TGG + chr2_1:4660663-4660682 Msa0189250:three_prime_UTR 25.0%
! AAAACACTTGTGTAATCATT+TGG + chr2_1:4660702-4660721 Msa0189250:three_prime_UTR 25.0%
! GAACTTACAAAAGTAGATTA+TGG + chr2_1:4660727-4660746 Msa0189250:three_prime_UTR 25.0%
! TATTAAGGACTTGTTTGGAT+TGG + chr2_1:4656508-4656527 Msa0189250:intron 30.0%
TGTCTGTATCATTGTTTCAT+AGG - chr2_1:4656617-4656636 None:intergenic 30.0%
CAATCAATCGCTTATAACAT+GGG - chr2_1:4657065-4657084 None:intergenic 30.0%
TCAATCAATCGCTTATAACA+TGG - chr2_1:4657066-4657085 None:intergenic 30.0%
ATGTTATAAGCGATTGATTG+AGG + chr2_1:4657065-4657084 Msa0189250:intron 30.0%
TGATATGAGAGAATAGGTTA+TGG - chr2_1:4657107-4657126 None:intergenic 30.0%
CAAACATGATATGAGAGAAT+AGG - chr2_1:4657113-4657132 None:intergenic 30.0%
TAGAACTGGAATTGTTGATA+AGG + chr2_1:4657185-4657204 Msa0189250:intron 30.0%
!!! TAGTTTTGACATTGGTTATC+TGG + chr2_1:4657259-4657278 Msa0189250:intron 30.0%
ACTGTGTATCTTGTTCATTT+CGG + chr2_1:4657291-4657310 Msa0189250:intron 30.0%
! AAATATTGGCTGAAGATTGT+CGG + chr2_1:4657611-4657630 Msa0189250:CDS 30.0%
! AAACTTCAAGTTTCAACACA+TGG - chr2_1:4657796-4657815 None:intergenic 30.0%
GCAAACATAGATCAATTTCT+AGG + chr2_1:4657829-4657848 Msa0189250:intron 30.0%
!!! CTATCCATCAAGACTTTTTT+GGG - chr2_1:4657955-4657974 None:intergenic 30.0%
TGCTTAAAAGGAGAAAAAAG+TGG - chr2_1:4658019-4658038 None:intergenic 30.0%
AAAAAGTGGCATTGCTTAAA+AGG - chr2_1:4658031-4658050 None:intergenic 30.0%
GATTCTATTGGAATTCAGAA+TGG + chr2_1:4658059-4658078 Msa0189250:intron 30.0%
AAGTATCAGTTATTGGTGAA+TGG + chr2_1:4658105-4658124 Msa0189250:intron 30.0%
!!! AGCTGTTTTTGAAACCAAAT+AGG + chr2_1:4658213-4658232 Msa0189250:intron 30.0%
ACATCATATAAGCTCCTATT+TGG - chr2_1:4658230-4658249 None:intergenic 30.0%
AACTAAGTTATTATCGACAG+TGG + chr2_1:4658270-4658289 Msa0189250:intron 30.0%
AATGTTCTAATCTCATAGTG+TGG + chr2_1:4658361-4658380 Msa0189250:intron 30.0%
! TATAATTGTTTTCTCTCGAC+AGG + chr2_1:4658420-4658439 Msa0189250:intron 30.0%
GACGTTCATATAAGATCTAA+TGG + chr2_1:4658481-4658500 Msa0189250:CDS 30.0%
TTTACTTCTTCCTTTATTCC+AGG + chr2_1:4658897-4658916 Msa0189250:CDS 30.0%
TTACTTCTTCCTTTATTCCA+GGG + chr2_1:4658898-4658917 Msa0189250:CDS 30.0%
! GAAATCGTTTATGCATTGAT+GGG + chr2_1:4659045-4659064 Msa0189250:CDS 30.0%
! AAATCGTTTATGCATTGATG+GGG + chr2_1:4659046-4659065 Msa0189250:CDS 30.0%
TTGAGATGGAATTCTTTCAT+TGG + chr2_1:4659263-4659282 Msa0189250:intron 30.0%
TAAGTTCTTGAACGTGAATA+GGG - chr2_1:4659306-4659325 None:intergenic 30.0%
TTAAGTTCTTGAACGTGAAT+AGG - chr2_1:4659307-4659326 None:intergenic 30.0%
GTTCAAGAACTTAATCATTC+TGG + chr2_1:4659313-4659332 Msa0189250:intron 30.0%
GTGTTATACAAAGATTGAGA+TGG + chr2_1:4659398-4659417 Msa0189250:intron 30.0%
! AAGAGTAATAAACTTTAGGG+TGG + chr2_1:4659475-4659494 Msa0189250:intron 30.0%
GATTCTATTCAACAGCTAAT+TGG + chr2_1:4659599-4659618 Msa0189250:intron 30.0%
AAATATTCATGCACTGTGAT+CGG + chr2_1:4659767-4659786 Msa0189250:intron 30.0%
ATGCTAACTCACAAAATTCA+GGG - chr2_1:4659985-4660004 None:intergenic 30.0%
TATGCTAACTCACAAAATTC+AGG - chr2_1:4659986-4660005 None:intergenic 30.0%
!!! CTTGAACTAGTTTTTCAACT+GGG - chr2_1:4660162-4660181 None:intergenic 30.0%
!!! TCTTGAACTAGTTTTTCAAC+TGG - chr2_1:4660163-4660182 None:intergenic 30.0%
CATTGTACAATAGCACATTA+TGG + chr2_1:4660213-4660232 Msa0189250:exon 30.0%
CAATTATGCTACCCTTTAAA+TGG + chr2_1:4660270-4660289 Msa0189250:three_prime_UTR 30.0%
TAAGGTGATGTCCATTTAAA+GGG - chr2_1:4660284-4660303 None:intergenic 30.0%
TTAAGGTGATGTCCATTTAA+AGG - chr2_1:4660285-4660304 None:intergenic 30.0%
GACATCACCTTAATTATCAT+TGG + chr2_1:4660292-4660311 Msa0189250:three_prime_UTR 30.0%
ATCACCTTAATTATCATTGG+AGG + chr2_1:4660295-4660314 Msa0189250:three_prime_UTR 30.0%
TCACCTTAATTATCATTGGA+GGG + chr2_1:4660296-4660315 Msa0189250:three_prime_UTR 30.0%
! GTTTTATACCCTTAGAAGTT+AGG - chr2_1:4660334-4660353 None:intergenic 30.0%
TATTGTGATAGAATTCTTGC+TGG + chr2_1:4660387-4660406 Msa0189250:three_prime_UTR 30.0%
ATTGTGATAGAATTCTTGCT+GGG + chr2_1:4660388-4660407 Msa0189250:three_prime_UTR 30.0%
! TTGCTTCTTGATTTTGTACT+TGG + chr2_1:4660621-4660640 Msa0189250:three_prime_UTR 30.0%
! TGCTTCTTGATTTTGTACTT+GGG + chr2_1:4660622-4660641 Msa0189250:three_prime_UTR 30.0%
TTGGGGAAAATTGTAAACTA+AGG + chr2_1:4660640-4660659 Msa0189250:three_prime_UTR 30.0%
TTGTAAACTAAGGAGACATT+TGG + chr2_1:4660650-4660669 Msa0189250:three_prime_UTR 30.0%
AACCAATCAGAAAAGAAGAG+AGG + chr2_1:4655883-4655902 Msa0189250:five_prime_UTR 35.0%
! AACCTCTCTTCTTTTCTGAT+TGG - chr2_1:4655888-4655907 None:intergenic 35.0%
TATACCTAAGAAGAGTTCTC+CGG - chr2_1:4656178-4656197 None:intergenic 35.0%
TTGTACATTACCGTTGAACT+CGG - chr2_1:4656261-4656280 None:intergenic 35.0%
AGTTCAACGGTAATGTACAA+TGG + chr2_1:4656261-4656280 Msa0189250:CDS 35.0%
GTTCAACGGTAATGTACAAT+GGG + chr2_1:4656262-4656281 Msa0189250:CDS 35.0%
TACAATGGGAAAGAGAGAAT+TGG + chr2_1:4656276-4656295 Msa0189250:CDS 35.0%
AGATTCAACCTGATGTGATT+TGG + chr2_1:4656316-4656335 Msa0189250:CDS 35.0%
GATTCAACCTGATGTGATTT+GGG + chr2_1:4656317-4656336 Msa0189250:CDS 35.0%
GAGAGTGAAAGATATTGAAG+CGG + chr2_1:4656344-4656363 Msa0189250:CDS 35.0%
TGAAAGATATTGAAGCGGAA+CGG + chr2_1:4656349-4656368 Msa0189250:CDS 35.0%
AGAAAAGTTGTAACTACTCC+TGG + chr2_1:4656375-4656394 Msa0189250:CDS 35.0%
CTTCTCTTTCCTTATCATCT+TGG + chr2_1:4656420-4656439 Msa0189250:CDS 35.0%
! ATGCTTATCTAGAGTCTGTT+TGG + chr2_1:4656549-4656568 Msa0189250:intron 35.0%
GTTTATCTAGGGATTCCAAT+CGG + chr2_1:4657144-4657163 Msa0189250:intron 35.0%
TTTATCTAGGGATTCCAATC+GGG + chr2_1:4657224-4657243 Msa0189250:intron 35.0%
CTGTGTATCTTGTTCATTTC+GGG + chr2_1:4657292-4657311 Msa0189250:intron 35.0%
! TCATTCACAGTATAGCTTGT+AGG + chr2_1:4657349-4657368 Msa0189250:intron 35.0%
! TTGACTCCGTATTTTCTTGT+TGG + chr2_1:4657377-4657396 Msa0189250:intron 35.0%
TCTCAATATGAGTCATCTTG+AGG + chr2_1:4657463-4657482 Msa0189250:intron 35.0%
!!! TAGTTTTGTGATGCATTTCC+AGG + chr2_1:4657495-4657514 Msa0189250:intron 35.0%
ACTTCAAGCTCAAAGGATAA+GGG - chr2_1:4657749-4657768 None:intergenic 35.0%
AGTTTCAACACATGGTAAAC+TGG - chr2_1:4657788-4657807 None:intergenic 35.0%
TTATTTCAGTTCTGTCTCCA+AGG - chr2_1:4657912-4657931 None:intergenic 35.0%
!!! CCTATCCATCAAGACTTTTT+TGG - chr2_1:4657956-4657975 None:intergenic 35.0%
! CCAAAAAAGTCTTGATGGAT+AGG + chr2_1:4657953-4657972 Msa0189250:intron 35.0%
! AAGTCTTGATGGATAGGATT+TGG + chr2_1:4657959-4657978 Msa0189250:intron 35.0%
TAGCTGTGATAATATGCATG+TGG + chr2_1:4658310-4658329 Msa0189250:intron 35.0%
GATCTTATATGAACGTCATC+TGG - chr2_1:4658478-4658497 None:intergenic 35.0%
GTAGAAAGAAAGACTTGAAC+TGG + chr2_1:4658565-4658584 Msa0189250:intron 35.0%
CAGGACTTGAAAAACTTCTT+CGG - chr2_1:4658765-4658784 None:intergenic 35.0%
! CAGAAGTACATATTACGACA+CGG - chr2_1:4658788-4658807 None:intergenic 35.0%
AACAAATCACCCTGGAATAA+AGG - chr2_1:4658910-4658929 None:intergenic 35.0%
ACTATACTAACAAATCACCC+TGG - chr2_1:4658918-4658937 None:intergenic 35.0%
AAAATCATCGCATGAAACCA+AGG - chr2_1:4658945-4658964 None:intergenic 35.0%
CGAAATCGTTTATGCATTGA+TGG + chr2_1:4659044-4659063 Msa0189250:CDS 35.0%
! AATCGTTTATGCATTGATGG+GGG + chr2_1:4659047-4659066 Msa0189250:CDS 35.0%
CATTGGAATACTTGGTATCT+AGG + chr2_1:4659280-4659299 Msa0189250:intron 35.0%
GTAAATGATGATTGCATGCT+TGG + chr2_1:4659343-4659362 Msa0189250:intron 35.0%
AGTTATGTGGTTTCATGTTG+AGG + chr2_1:4659371-4659390 Msa0189250:intron 35.0%
!!! AGGGTGGAAAATGCTTTTTT+AGG + chr2_1:4659491-4659510 Msa0189250:intron 35.0%
TCTATTCAACAGCTAATTGG+AGG + chr2_1:4659602-4659621 Msa0189250:intron 35.0%
! TAGACGACTGATGAGTATTT+TGG + chr2_1:4660026-4660045 Msa0189250:intron 35.0%
TCAAGAATTACATCTTCTGC+TGG - chr2_1:4660088-4660107 None:intergenic 35.0%
GATATCCAAACTCAAAGAGT+CGG - chr2_1:4660111-4660130 None:intergenic 35.0%
! TTATGGATTGAAGATGCATG+AGG + chr2_1:4660230-4660249 Msa0189250:three_prime_UTR 35.0%
TTGTGATAGAATTCTTGCTG+GGG + chr2_1:4660389-4660408 Msa0189250:three_prime_UTR 35.0%
ATTTATAGCCAGTTTCCCTA+TGG + chr2_1:4660525-4660544 Msa0189250:three_prime_UTR 35.0%
CCATAACTTTGTCATCCATA+GGG - chr2_1:4660543-4660562 None:intergenic 35.0%
! GCTTCTTGATTTTGTACTTG+GGG + chr2_1:4660623-4660642 Msa0189250:three_prime_UTR 35.0%
TTGAGAAGGTGAGATGAAGA+AGG - chr2_1:4655989-4656008 None:intergenic 40.0%
AATTGAATTGAGTACGCGTG+GGG - chr2_1:4656074-4656093 None:intergenic 40.0%
GAATTGAATTGAGTACGCGT+GGG - chr2_1:4656075-4656094 None:intergenic 40.0%
AGAATTGAATTGAGTACGCG+TGG - chr2_1:4656076-4656095 None:intergenic 40.0%
! AAGGATTTCTTTTCTTCCGG+CGG - chr2_1:4656144-4656163 None:intergenic 40.0%
! GCGAAGGATTTCTTTTCTTC+CGG - chr2_1:4656147-4656166 None:intergenic 40.0%
GAATTCGAATCCGAGTTCAA+CGG + chr2_1:4656248-4656267 Msa0189250:CDS 40.0%
!! AGAGAGAATTGGTGCTGTTA+TGG + chr2_1:4656287-4656306 Msa0189250:CDS 40.0%
TGAGCAACACCAAGATGATA+AGG - chr2_1:4656432-4656451 None:intergenic 40.0%
! ACACCTTCAGTTAGAAGTGT+CGG + chr2_1:4656725-4656744 Msa0189250:intron 40.0%
GAGCCTATGAAAACAACTCA+TGG + chr2_1:4656893-4656912 Msa0189250:intron 40.0%
!! ACGCCATGAGTTGTTTTCAT+AGG - chr2_1:4656899-4656918 None:intergenic 40.0%
TAATTACATGAGCACCCGAT+TGG - chr2_1:4657241-4657260 None:intergenic 40.0%
! ATTTCGGGTGCTCATGTAAT+CGG + chr2_1:4657307-4657326 Msa0189250:intron 40.0%
TACTTTCAGGCCAAGTATAG+AGG - chr2_1:4657669-4657688 None:intergenic 40.0%
CACTTCAAGCTCAAAGGATA+AGG - chr2_1:4657750-4657769 None:intergenic 40.0%
TATCCTTTGAGCTTGAAGTG+TGG + chr2_1:4657750-4657769 Msa0189250:intron 40.0%
TAACCACACTTCAAGCTCAA+AGG - chr2_1:4657756-4657775 None:intergenic 40.0%
TTTGGGTCCCAAAATTCACA+AGG - chr2_1:4657938-4657957 None:intergenic 40.0%
! TCTTGATGGATAGGATTTGG+TGG + chr2_1:4657962-4657981 Msa0189250:intron 40.0%
! CTTGATGGATAGGATTTGGT+GGG + chr2_1:4657963-4657982 Msa0189250:intron 40.0%
GTACGAGTTCATGTGATAAG+TGG + chr2_1:4657985-4658004 Msa0189250:intron 40.0%
TTGCTGTAACACAGCTTCTT+TGG + chr2_1:4658814-4658833 Msa0189250:CDS 40.0%
! TGCATTGATGAGATCTTCCT+TGG - chr2_1:4658874-4658893 None:intergenic 40.0%
! AGATATCTGGAGGGAGTATA+AGG - chr2_1:4658999-4659018 None:intergenic 40.0%
! TTTGGTGCAAGATATCTGGA+GGG - chr2_1:4659008-4659027 None:intergenic 40.0%
ATGCTTGGTCACTAGTTATG+TGG + chr2_1:4659358-4659377 Msa0189250:intron 40.0%
AAAATTCAGGGATACCTGAC+GGG - chr2_1:4659973-4659992 None:intergenic 40.0%
CAAAATTCAGGGATACCTGA+CGG - chr2_1:4659974-4659993 None:intergenic 40.0%
ATATCTTGATGCTGCTGTCT+GGG + chr2_1:4660126-4660145 Msa0189250:CDS 40.0%
!! ACAATGCTATTTCCGAATGC+AGG - chr2_1:4660199-4660218 None:intergenic 40.0%
CCTCCCTCCAATGATAATTA+AGG - chr2_1:4660302-4660321 None:intergenic 40.0%
CCTTAATTATCATTGGAGGG+AGG + chr2_1:4660299-4660318 Msa0189250:three_prime_UTR 40.0%
TCTGCAGTTCCTAACTTCTA+AGG + chr2_1:4660322-4660341 Msa0189250:three_prime_UTR 40.0%
CTGCAGTTCCTAACTTCTAA+GGG + chr2_1:4660323-4660342 Msa0189250:three_prime_UTR 40.0%
TGTGATAGAATTCTTGCTGG+GGG + chr2_1:4660390-4660409 Msa0189250:three_prime_UTR 40.0%
TTTGTCATCCATAGGGAAAC+TGG - chr2_1:4660536-4660555 None:intergenic 40.0%
CCCTATGGATGACAAAGTTA+TGG + chr2_1:4660540-4660559 Msa0189250:three_prime_UTR 40.0%
GCCATAACTTTGTCATCCAT+AGG - chr2_1:4660544-4660563 None:intergenic 40.0%
! TGACGACTTTCCCTCGTTTT+TGG - chr2_1:4655826-4655845 None:intergenic 45.0%
TCTTCTCCGTTCACGCAAAT+GGG + chr2_1:4655934-4655953 Msa0189250:exon 45.0%
ATGAAGAAGGAGGAGATGGA+TGG - chr2_1:4655976-4655995 None:intergenic 45.0%
TGAGATGAAGAAGGAGGAGA+TGG - chr2_1:4655980-4655999 None:intergenic 45.0%
AGAAGGTGAGATGAAGAAGG+AGG - chr2_1:4655986-4656005 None:intergenic 45.0%
! AACGGAAAGTGTGACGGTAA+CGG - chr2_1:4656017-4656036 None:intergenic 45.0%
! AACGGAAACGGAAAGTGTGA+CGG - chr2_1:4656023-4656042 None:intergenic 45.0%
GGTTAACGTCGTTAGGGAAA+CGG - chr2_1:4656041-4656060 None:intergenic 45.0%
GAGTGAGGTTAACGTCGTTA+GGG - chr2_1:4656047-4656066 None:intergenic 45.0%
AGAGTGAGGTTAACGTCGTT+AGG - chr2_1:4656048-4656067 None:intergenic 45.0%
GCAGCAGAGAAACTAAAACC+AGG - chr2_1:4656396-4656415 None:intergenic 45.0%
!!! GGTTTTAGTTTCTCTGCTGC+TGG + chr2_1:4656396-4656415 Msa0189250:CDS 45.0%
! CTTCTAACTGAAGGTGTGTC+TGG - chr2_1:4656722-4656741 None:intergenic 45.0%
AAACCGCTTGTGAAGCAGTT+TGG + chr2_1:4656868-4656887 Msa0189250:intron 45.0%
AACCGCTTGTGAAGCAGTTT+GGG + chr2_1:4656869-4656888 Msa0189250:intron 45.0%
! TTTCGGGTGCTCATGTAATC+GGG + chr2_1:4657308-4657327 Msa0189250:intron 45.0%
ATTGGCTGAAGATTGTCGGA+AGG + chr2_1:4657615-4657634 Msa0189250:CDS 45.0%
TTGGCTGAAGATTGTCGGAA+GGG + chr2_1:4657616-4657635 Msa0189250:CDS 45.0%
TGTCAGTGCTTGTTTGCTCA+TGG + chr2_1:4657722-4657741 Msa0189250:intron 45.0%
TGCATTGCTGACAAGAACCT+TGG + chr2_1:4657892-4657911 Msa0189250:intron 45.0%
GGGACCCAAAAAAGTCTTGA+TGG + chr2_1:4657948-4657967 Msa0189250:intron 45.0%
GGAGCTTATATGATGTGCAG+AGG + chr2_1:4658234-4658253 Msa0189250:intron 45.0%
AGATCTAATGGGAGAGTTCG+AGG + chr2_1:4658493-4658512 Msa0189250:CDS 45.0%
AGTACATATTACGACACGGC+AGG - chr2_1:4658784-4658803 None:intergenic 45.0%
GGTGGATCAGTTTGATTCCA+AGG + chr2_1:4658854-4658873 Msa0189250:CDS 45.0%
! CTTTGGTGCAAGATATCTGG+AGG - chr2_1:4659009-4659028 None:intergenic 45.0%
!! TGGCTTTGGTGCAAGATATC+TGG - chr2_1:4659012-4659031 None:intergenic 45.0%
CGATTTCGAAACATCGTAGC+TGG - chr2_1:4659032-4659051 None:intergenic 45.0%
TGTGGTTTCATGTTGAGGCT+TGG + chr2_1:4659376-4659395 Msa0189250:intron 45.0%
GTATGGGATTGCAAGGGATA+GGG + chr2_1:4659910-4659929 Msa0189250:CDS 45.0%
AAATTCAGGGATACCTGACG+GGG - chr2_1:4659972-4659991 None:intergenic 45.0%
! CTTGACCGACTCTTTGAGTT+TGG + chr2_1:4660103-4660122 Msa0189250:CDS 45.0%
GATATCTTGATGCTGCTGTC+TGG + chr2_1:4660125-4660144 Msa0189250:CDS 45.0%
GATACTACTGCTCCTGCATT+CGG + chr2_1:4660184-4660203 Msa0189250:CDS 45.0%
GTGATAGAATTCTTGCTGGG+GGG + chr2_1:4660391-4660410 Msa0189250:three_prime_UTR 45.0%
!! TTATTTAATATTTACAAAAT+AGG + chr2_1:4660447-4660466 Msa0189250:three_prime_UTR 5.0%
!! TATTTAATATTTACAAAATA+GGG + chr2_1:4660448-4660467 Msa0189250:three_prime_UTR 5.0%
CATTTGCGTGAACGGAGAAG+AGG - chr2_1:4655935-4655954 None:intergenic 50.0%
CTCTTCTCCGTTCACGCAAA+TGG + chr2_1:4655933-4655952 Msa0189250:exon 50.0%
CTTCTCCGTTCACGCAAATG+GGG + chr2_1:4655935-4655954 Msa0189250:exon 50.0%
ATGCACCCCATTTGCGTGAA+CGG - chr2_1:4655943-4655962 None:intergenic 50.0%
AAGGAGGAGATGGATGGAGT+TGG - chr2_1:4655970-4655989 None:intergenic 50.0%
CGTCGTTAGGGAAACGGAAA+CGG - chr2_1:4656035-4656054 None:intergenic 50.0%
! GATTTCTTTTCTTCCGGCGG+AGG - chr2_1:4656141-4656160 None:intergenic 50.0%
GTCACCGGAGAACTCTTCTT+AGG + chr2_1:4656171-4656190 Msa0189250:CDS 50.0%
GAATTCTCGAACATCGCCAC+CGG - chr2_1:4656234-4656253 None:intergenic 50.0%
CTCTGCTCCCAAATCACATC+AGG - chr2_1:4656327-4656346 None:intergenic 50.0%
! GCACCGACACTTCTAACTGA+AGG - chr2_1:4656731-4656750 None:intergenic 50.0%
CTCCCAAACTGCTTCACAAG+CGG - chr2_1:4656874-4656893 None:intergenic 50.0%
AGAAGAACCAGCTAATGGCG+TGG - chr2_1:4657524-4657543 None:intergenic 50.0%
CCAGCAGAAGAACCAGCTAA+TGG - chr2_1:4657529-4657548 None:intergenic 50.0%
! CCATTAGCTGGTTCTTCTGC+TGG + chr2_1:4657526-4657545 Msa0189250:CDS 50.0%
GTCTGTGCTGTAGTTGCTTC+TGG + chr2_1:4657556-4657575 Msa0189250:CDS 50.0%
!! AGTTGCTTCTGGAGCTAGCA+TGG + chr2_1:4657567-4657586 Msa0189250:CDS 50.0%
TGGCTGAAGATTGTCGGAAG+GGG + chr2_1:4657617-4657636 Msa0189250:CDS 50.0%
! TGGGGGTATGCCTCTATACT+TGG + chr2_1:4657656-4657675 Msa0189250:intron 50.0%
! CAACCACGCGAAGTACTTTC+AGG - chr2_1:4657682-4657701 None:intergenic 50.0%
!! CTGAAAGTACTTCGCGTGGT+TGG + chr2_1:4657680-4657699 Msa0189250:intron 50.0%
! ACAGCTTCTTTGGAGACCCA+GGG + chr2_1:4658824-4658843 Msa0189250:CDS 50.0%
TGATCCACCAACAAACCCCT+GGG - chr2_1:4658843-4658862 None:intergenic 50.0%
! CGAAACATCGTAGCTGGCTT+TGG - chr2_1:4659026-4659045 None:intergenic 50.0%
ACCGACATCTGCAGCACAAA+CGG + chr2_1:4659088-4659107 Msa0189250:CDS 50.0%
ACCGTTTGTGCTGCAGATGT+CGG - chr2_1:4659092-4659111 None:intergenic 50.0%
! CGTGTTTGTGCTTTTCCAGC+AGG + chr2_1:4659885-4659904 Msa0189250:CDS 50.0%
! TGCTTTTCCAGCAGGTCGTA+TGG + chr2_1:4659893-4659912 Msa0189250:CDS 50.0%
! GCTTTTCCAGCAGGTCGTAT+GGG + chr2_1:4659894-4659913 Msa0189250:CDS 50.0%
CAGGTCGTATGGGATTGCAA+GGG + chr2_1:4659904-4659923 Msa0189250:CDS 50.0%
CGTATGGGATTGCAAGGGAT+AGG + chr2_1:4659909-4659928 Msa0189250:CDS 50.0%
GCGTTCTCGGGATTACAATC+TGG - chr2_1:4659942-4659961 None:intergenic 50.0%
AATTCAGGGATACCTGACGG+GGG - chr2_1:4659971-4659990 None:intergenic 50.0%
ACGAGGGAAAGTCGTCATCG+TGG + chr2_1:4655829-4655848 Msa0189250:five_prime_UTR 55.0%
GTTCACGCAAATGGGGTGCA+TGG + chr2_1:4655942-4655961 Msa0189250:exon 55.0%
! CGGTAACGGTGAGCTTGAGA+AGG - chr2_1:4656003-4656022 None:intergenic 55.0%
! GAGTGTTGTTGAACGCGTGG+TGG - chr2_1:4656099-4656118 None:intergenic 55.0%
!! GTGGAGTGTTGTTGAACGCG+TGG - chr2_1:4656102-4656121 None:intergenic 55.0%
! TTTTCTTCCGGCGGAGGAGA+GGG - chr2_1:4656135-4656154 None:intergenic 55.0%
AAATCCTTCGCCGTCGTCAC+CGG + chr2_1:4656156-4656175 Msa0189250:CDS 55.0%
GAAGAGTTCTCCGGTGACGA+CGG - chr2_1:4656169-4656188 None:intergenic 55.0%
CAGCTAATGGCGTGGTTTCC+TGG - chr2_1:4657516-4657535 None:intergenic 55.0%
CAGGAAACCACGCCATTAGC+TGG + chr2_1:4657514-4657533 Msa0189250:intron 55.0%
GGCTGAAGATTGTCGGAAGG+GGG + chr2_1:4657618-4657637 Msa0189250:CDS 55.0%
GCTGAAGATTGTCGGAAGGG+GGG + chr2_1:4657619-4657638 Msa0189250:CDS 55.0%
CTGAAGATTGTCGGAAGGGG+GGG + chr2_1:4657620-4657639 Msa0189250:CDS 55.0%
!! TGGCCTGAAAGTACTTCGCG+TGG + chr2_1:4657676-4657695 Msa0189250:intron 55.0%
! CACAGCTTCTTTGGAGACCC+AGG + chr2_1:4658823-4658842 Msa0189250:CDS 55.0%
! CAGCTTCTTTGGAGACCCAG+GGG + chr2_1:4658825-4658844 Msa0189250:CDS 55.0%
TTGGAGACCCAGGGGTTTGT+TGG + chr2_1:4658833-4658852 Msa0189250:CDS 55.0%
CTGATCCACCAACAAACCCC+TGG - chr2_1:4658844-4658863 None:intergenic 55.0%
GTTTGTGCTGCAGATGTCGG+TGG - chr2_1:4659089-4659108 None:intergenic 55.0%
TGCAATCCCATACGACCTGC+TGG - chr2_1:4659903-4659922 None:intergenic 55.0%
GCAGGTCGTATGGGATTGCA+AGG + chr2_1:4659903-4659922 Msa0189250:CDS 55.0%
TGATGCTGCTGTCTGGGCAA+AGG + chr2_1:4660132-4660151 Msa0189250:CDS 55.0%
ATTCTTGCTGGGGGGAGAAG+AGG + chr2_1:4660399-4660418 Msa0189250:three_prime_UTR 55.0%
TTCTTGCTGGGGGGAGAAGA+GGG + chr2_1:4660400-4660419 Msa0189250:three_prime_UTR 55.0%
TACGCGTGGGGAGAAGAGTG+AGG - chr2_1:4656062-4656081 None:intergenic 60.0%
AGGAGAGGGAGAAGGAGGTG+TGG - chr2_1:4656121-4656140 None:intergenic 60.0%
! CTTTTCTTCCGGCGGAGGAG+AGG - chr2_1:4656136-4656155 None:intergenic 60.0%
! CAACAGCCGCGAATCGACTC+CGG + chr2_1:4656212-4656231 Msa0189250:CDS 60.0%
GGAAGGGGGGGACTGCATTT+CGG + chr2_1:4657632-4657651 Msa0189250:CDS 60.0%
!! GAGACCCAGGGGTTTGTTGG+TGG + chr2_1:4658836-4658855 Msa0189250:CDS 60.0%
TCTTGCTGGGGGGAGAAGAG+GGG + chr2_1:4660401-4660420 Msa0189250:three_prime_UTR 60.0%
TCCTTCTCCCTCTCCTCCGC+CGG + chr2_1:4656125-4656144 Msa0189250:CDS 65.0%
TTCTCCGGTGACGACGGCGA+AGG - chr2_1:4656163-4656182 None:intergenic 65.0%
!! TCGCCACCGGAGTCGATTCG+CGG - chr2_1:4656221-4656240 None:intergenic 65.0%
GGGGGGACTGCATTTCGGCT+GGG + chr2_1:4657637-4657656 Msa0189250:CDS 65.0%
GGGGGACTGCATTTCGGCTG+GGG + chr2_1:4657638-4657657 Msa0189250:CDS 65.0%
GGGGACTGCATTTCGGCTGG+GGG + chr2_1:4657639-4657658 Msa0189250:CDS 65.0%
ACGGGGGCTAGACGCGTTCT+CGG - chr2_1:4659955-4659974 None:intergenic 65.0%
GGCGGAGGAGAGGGAGAAGG+AGG - chr2_1:4656126-4656145 None:intergenic 70.0%
TCCGGCGGAGGAGAGGGAGA+AGG - chr2_1:4656129-4656148 None:intergenic 70.0%
! CAGCCGCGAATCGACTCCGG+TGG + chr2_1:4656215-4656234 Msa0189250:CDS 70.0%
GGGGGGGACTGCATTTCGGC+TGG + chr2_1:4657636-4657655 Msa0189250:CDS 70.0%
CGGGGGCTAGACGCGTTCTC+GGG - chr2_1:4659954-4659973 None:intergenic 70.0%
GAACGCGTCTAGCCCCCGTC+AGG + chr2_1:4659956-4659975 Msa0189250:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 4655823 4660761 4655823 ID=Msa0189250;Name=Msa0189250
chr2_1 mRNA 4655823 4660761 4655823 ID=Msa0189250-mRNA-1;Parent=Msa0189250;Name=Msa0189250-mRNA-1;_AED=0.05;_eAED=0.05;_QI=129|1|1|1|1|1|7|536|401
chr2_1 exon 4655823 4656479 4655823 ID=Msa0189250-mRNA-1:exon:2016;Parent=Msa0189250-mRNA-1
chr2_1 exon 4657517 4657660 4657517 ID=Msa0189250-mRNA-1:exon:2017;Parent=Msa0189250-mRNA-1
chr2_1 exon 4658442 4658514 4658442 ID=Msa0189250-mRNA-1:exon:2018;Parent=Msa0189250-mRNA-1
chr2_1 exon 4658814 4658919 4658814 ID=Msa0189250-mRNA-1:exon:2019;Parent=Msa0189250-mRNA-1
chr2_1 exon 4659013 4659109 4659013 ID=Msa0189250-mRNA-1:exon:2020;Parent=Msa0189250-mRNA-1
chr2_1 exon 4659882 4659977 4659882 ID=Msa0189250-mRNA-1:exon:2021;Parent=Msa0189250-mRNA-1
chr2_1 exon 4660064 4660761 4660064 ID=Msa0189250-mRNA-1:exon:2022;Parent=Msa0189250-mRNA-1
chr2_1 five_prime_UTR 4655823 4655951 4655823 ID=Msa0189250-mRNA-1:five_prime_utr;Parent=Msa0189250-mRNA-1
chr2_1 CDS 4655952 4656479 4655952 ID=Msa0189250-mRNA-1:cds;Parent=Msa0189250-mRNA-1
chr2_1 CDS 4657517 4657660 4657517 ID=Msa0189250-mRNA-1:cds;Parent=Msa0189250-mRNA-1
chr2_1 CDS 4658442 4658514 4658442 ID=Msa0189250-mRNA-1:cds;Parent=Msa0189250-mRNA-1
chr2_1 CDS 4658814 4658919 4658814 ID=Msa0189250-mRNA-1:cds;Parent=Msa0189250-mRNA-1
chr2_1 CDS 4659013 4659109 4659013 ID=Msa0189250-mRNA-1:cds;Parent=Msa0189250-mRNA-1
chr2_1 CDS 4659882 4659977 4659882 ID=Msa0189250-mRNA-1:cds;Parent=Msa0189250-mRNA-1
chr2_1 CDS 4660064 4660225 4660064 ID=Msa0189250-mRNA-1:cds;Parent=Msa0189250-mRNA-1
chr2_1 three_prime_UTR 4660226 4660761 4660226 ID=Msa0189250-mRNA-1:three_prime_utr;Parent=Msa0189250-mRNA-1
Gene Sequence

>Msa0189250

ATGGGGTGCATGGCTCCAACTCCATCCATCTCCTCCTTCTTCATCTCACCTTCTCAAGCTCACCGTTACCGTCACACTTTCCGTTTCCGTTTCCCTAACGACGTTAACCTCACTCTTCTCCCCACGCGTACTCAATTCAATTCTCCACCACGCGTTCAACAACACTCCACACCTCCTTCTCCCTCTCCTCCGCCGGAAGAAAAGAAATCCTTCGCCGTCGTCACCGGAGAACTCTTCTTAGGTATAGCTTCACGTCTCATCAACAGCCGCGAATCGACTCCGGTGGCGATGTTCGAGAATTCGAATCCGAGTTCAACGGTAATGTACAATGGGAAAGAGAGAATTGGTGCTGTTATGGAAGATGAGATTCAACCTGATGTGATTTGGGAGCAGAGAGTGAAAGATATTGAAGCGGAACGGAGTAGAAAAGTTGTAACTACTCCTGGTTTTAGTTTCTCTGCTGCTGGTCTTCTCTTTCCTTATCATCTTGGTGTTGCTCATTTTCTTATTCAAAATGGTTACATTAAGGAAACCACGCCATTAGCTGGTTCTTCTGCTGGAGCTATAGTCTGTGCTGTAGTTGCTTCTGGAGCTAGCATGGAAGAAGCTTTGATAGCTACTAAAATATTGGCTGAAGATTGTCGGAAGGGGGGGACTGCATTTCGGCTGGGGGCTGTTCTGCGTGATATTCTTCAGAAGTTTTTGCCAGATGACGTTCATATAAGATCTAATGGGAGAGTTCGAGTTGCTGTAACACAGCTTCTTTGGAGACCCAGGGGTTTGTTGGTGGATCAGTTTGATTCCAAGGAAGATCTCATCAATGCAGTTTTTACTTCTTCCTTTATTCCAGGATATCTTGCACCAAAGCCAGCTACGATGTTTCGAAATCGTTTATGCATTGATGGGGGTTTGACGTTGTTTATGCCACCGACATCTGCAGCACAAACGGTACGTGTTTGTGCTTTTCCAGCAGGTCGTATGGGATTGCAAGGGATAGGGATTAGTCCAGATTGTAATCCCGAGAACGCGTCTAGCCCCCGTCAGCTTTTGAATTGGGCTCTTGAGCCAGCAGAAGATGTAATTCTTGACCGACTCTTTGAGTTTGGATATCTTGATGCTGCTGTCTGGGCAAAGGAAAACCCAGTTGAAAAACTAGTTCAAGATGATACTACTGCTCCTGCATTCGGAAATAGCATTGTACAATAG

Protein sequence

>Msa0189250

MGCMAPTPSISSFFISPSQAHRYRHTFRFRFPNDVNLTLLPTRTQFNSPPRVQQHSTPPSPSPPPEEKKSFAVVTGELFLGIASRLINSRESTPVAMFENSNPSSTVMYNGKERIGAVMEDEIQPDVIWEQRVKDIEAERSRKVVTTPGFSFSAAGLLFPYHLGVAHFLIQNGYIKETTPLAGSSAGAIVCAVVASGASMEEALIATKILAEDCRKGGTAFRLGAVLRDILQKFLPDDVHIRSNGRVRVAVTQLLWRPRGLLVDQFDSKEDLINAVFTSSFIPGYLAPKPATMFRNRLCIDGGLTLFMPPTSAAQTVRVCAFPAGRMGLQGIGISPDCNPENASSPRQLLNWALEPAEDVILDRLFEFGYLDAAVWAKENPVEKLVQDDTTAPAFGNSIVQ*