AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1366140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1366140 MtrunA17_Chr1g0187401 97.464 276 7 0 1 276 1 276 0.0 541
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1366140 AT3G23400.1 74.468 188 48 0 89 276 97 284 5.85e-104 304
Msa1366140 AT3G23400.4 77.119 118 27 0 89 206 97 214 1.57e-63 199
Msa1366140 AT3G23400.3 47.436 156 76 1 10 165 24 173 1.64e-34 124
Msa1366140 AT3G23400.2 47.436 156 76 1 10 165 24 173 1.64e-34 124

Find 101 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAAACAAATATTCCTTTA+AGG 0.088989 tig0018446:-21207 None:intergenic
AACTTTAATTTCAAAGTAAT+TGG 0.172588 tig0018446:-21290 None:intergenic
CCCCTTGAAGTTCAATCTTC+TGG 0.182887 tig0018446:+19279 Msa1366140:CDS
TGTAACATATTTAACCTTAA+AGG 0.202545 tig0018446:+21193 Msa1366140:three_prime_UTR
CAGCAGCAGCTTTCACAATA+AGG 0.227641 tig0018446:-19195 None:intergenic
CTTGTTCTTGTTTCTTTCCT+AGG 0.270299 tig0018446:+19119 Msa1366140:CDS
TGTGGAAGAGATTAGATTAA+TGG 0.291979 tig0018446:-19018 None:intergenic
CAGACCTGTCCAAGAGTTAT+AGG 0.304929 tig0018446:-20379 None:intergenic
ATGCTGCAGAGTGCTGTTGC+TGG 0.321754 tig0018446:+20151 Msa1366140:intron
TCAAAAGGATTAGAAGGAAT+TGG 0.350636 tig0018446:-19247 None:intergenic
GGCTTAATATGTTTACCCTT+TGG 0.357584 tig0018446:-19166 None:intergenic
GTAGAATCAAAAGGATTAGA+AGG 0.359007 tig0018446:-19253 None:intergenic
AAGAAGTAGAAAATGGTAGT+AGG 0.359127 tig0018446:-19099 None:intergenic
CAAGAACAAGAAGTAGAAAA+TGG 0.362005 tig0018446:-19106 None:intergenic
AGCAGCAGCTTTCACAATAA+GGG 0.381281 tig0018446:-19194 None:intergenic
GAGAAGTTGAGGGGTGAAGA+AGG 0.382924 tig0018446:-19066 None:intergenic
ATCTTCCTTGCAACTTATCA+AGG 0.390696 tig0018446:-20276 None:intergenic
GATATACCCAACCCACACTA+TGG 0.396755 tig0018446:+21146 Msa1366140:three_prime_UTR
TGTTTATAGATAATTACATA+TGG 0.416492 tig0018446:+21222 Msa1366140:three_prime_UTR
CTAATGTGGCAGTTACTTCA+AGG 0.421507 tig0018446:-20679 None:intergenic
AGAAGTAGAAAATGGTAGTA+GGG 0.421680 tig0018446:-19098 None:intergenic
AGCCTTCCTGTGGGAGGTCC+AGG 0.424885 tig0018446:-20352 None:intergenic
GGAGCTCCATAGTGTGGGTT+GGG 0.430889 tig0018446:-21152 None:intergenic
CTCAATGCATCTGGAATTTG+AGG 0.437203 tig0018446:-20950 None:intergenic
AAAACCACAGTGAAGACAAC+CGG 0.437328 tig0018446:+20896 Msa1366140:CDS
AATTTAATATCAAAGCTGTT+AGG 0.438699 tig0018446:-21353 None:intergenic
ACTCTAGGTGGGAGCCGTCC+TGG 0.438721 tig0018446:+20334 Msa1366140:CDS
AGGGGTGAAGAAGGAGATTG+AGG 0.439438 tig0018446:-19057 None:intergenic
TGCTGCAGAGTGCTGTTGCT+GGG 0.444702 tig0018446:+20152 Msa1366140:intron
GATTGTGGCCTCAATGCATC+TGG 0.448068 tig0018446:-20959 None:intergenic
AGGCTCCTTCCTATAACTCT+TGG 0.456747 tig0018446:+20370 Msa1366140:CDS
ACCTTCAGTTGGGTGCTCCA+TGG 0.457796 tig0018446:+20645 Msa1366140:CDS
GAGGAGATAGAGGCGAGCTA+AGG 0.461380 tig0018446:+21041 Msa1366140:CDS
ATCAATGTTCTTACTCCAAA+GGG 0.463819 tig0018446:+19151 Msa1366140:CDS
CTCTATCTCCTCTGGTGACG+CGG 0.465853 tig0018446:-21030 None:intergenic
CTCAAATTTGTGAGCTAATG+TGG 0.469198 tig0018446:-20693 None:intergenic
GGGTGAGAGAGAGAAGTTGA+GGG 0.469372 tig0018446:-19076 None:intergenic
AAAGGCAGATGCTGCGGCTA+AGG 0.475842 tig0018446:+20213 Msa1366140:CDS
GAGATATAACACAAAGTCAT+TGG 0.480126 tig0018446:+21320 Msa1366140:three_prime_UTR
GGGGTGAAGAAGGAGATTGA+GGG 0.481429 tig0018446:-19056 None:intergenic
GAAGCTGATATTTCAATCTC+TGG 0.485146 tig0018446:+19217 Msa1366140:CDS
ATTGGAGACTAAAACTGAAA+AGG 0.488872 tig0018446:-21272 None:intergenic
TTGATAAGTTGCAAGGAAGA+TGG 0.492943 tig0018446:+20278 Msa1366140:CDS
CTCAAATTCCAGATGCATTG+AGG 0.496761 tig0018446:+20951 Msa1366140:CDS
GTTACTTCAAGGGGCGGTAG+AGG 0.502869 tig0018446:-20668 None:intergenic
GCTAAGGAACTTGAAGAAGC+TGG 0.503259 tig0018446:+20229 Msa1366140:CDS
AGGAGATAGAGGCGAGCTAA+GGG 0.505818 tig0018446:+21042 Msa1366140:CDS
GCTTTCACAATAAGGGATGA+AGG 0.507075 tig0018446:-19187 None:intergenic
GCGTTCTCCTCTCGTACTCT+AGG 0.509013 tig0018446:+20319 Msa1366140:CDS
ACATTGATGCTGTTGCTCCT+AGG 0.511152 tig0018446:-19136 None:intergenic
TAATATAGTGGACCTTCAGT+TGG 0.514528 tig0018446:+20634 Msa1366140:CDS
TCAAGGGGCGGTAGAGGCCA+TGG 0.516112 tig0018446:-20662 None:intergenic
GACCAGAAGATTGAACTTCA+AGG 0.517749 tig0018446:-19281 None:intergenic
CCACAATCTAATAGAGGAAG+TGG 0.521959 tig0018446:+20974 Msa1366140:CDS
AGGAGCTCCATAGTGTGGGT+TGG 0.524813 tig0018446:-21153 None:intergenic
CCTTCCTATAACTCTTGGAC+AGG 0.529460 tig0018446:+20375 Msa1366140:CDS
TAGCTCGCCTCTATCTCCTC+TGG 0.530340 tig0018446:-21038 None:intergenic
AATATAGTGGACCTTCAGTT+GGG 0.531782 tig0018446:+20635 Msa1366140:CDS
GCCCTAGGAGCTCCATAGTG+TGG 0.534101 tig0018446:-21158 None:intergenic
GGGGTGAGAGAGAGAAGTTG+AGG 0.537948 tig0018446:-19077 None:intergenic
CCCACACTATGGAGCTCCTA+GGG 0.543476 tig0018446:+21157 Msa1366140:three_prime_UTR
CATCAATGTTCTTACTCCAA+AGG 0.544020 tig0018446:+19150 Msa1366140:CDS
ACCAGAAGATTGAACTTCAA+GGG 0.545837 tig0018446:-19280 None:intergenic
TTCTCCTCTCGTACTCTAGG+TGG 0.547834 tig0018446:+20322 Msa1366140:CDS
TTGAGGCCACAATCTAATAG+AGG 0.552114 tig0018446:+20968 Msa1366140:CDS
GAAGTAGAAAATGGTAGTAG+GGG 0.556342 tig0018446:-19097 None:intergenic
CCACTTCCTCTATTAGATTG+TGG 0.557605 tig0018446:-20974 None:intergenic
CCCTAGGAGCTCCATAGTGT+GGG 0.557670 tig0018446:-21157 None:intergenic
AGCCGTCCTGGACCTCCCAC+AGG 0.562196 tig0018446:+20346 Msa1366140:CDS
TCTATCTCCTCTGGTGACGC+GGG 0.563631 tig0018446:-21029 None:intergenic
ACCCACACTATGGAGCTCCT+AGG 0.567793 tig0018446:+21156 Msa1366140:three_prime_UTR
TCTCCTCTCGTACTCTAGGT+GGG 0.571585 tig0018446:+20323 Msa1366140:CDS
GCCATGGAGCACCCAACTGA+AGG 0.577155 tig0018446:-20646 None:intergenic
GACAACCTTGATAAGTTGCA+AGG 0.586490 tig0018446:+20271 Msa1366140:CDS
AAATGAAGAAGACCTACAAA+AGG 0.586772 tig0018446:+20195 Msa1366140:CDS
TAATGTGGCAGTTACTTCAA+GGG 0.589545 tig0018446:-20678 None:intergenic
AAACCACAGTGAAGACAACC+GGG 0.596707 tig0018446:+20897 Msa1366140:CDS
GCTCACAAATTTGAGCTCGT+AGG 0.603423 tig0018446:+20701 Msa1366140:CDS
CGCGTCACCAGAGGAGATAG+AGG 0.604555 tig0018446:+21031 Msa1366140:CDS
GCTGTTGCTGGGCTAAATAG+AGG 0.605133 tig0018446:+20163 Msa1366140:CDS
CCTGTCCAAGAGTTATAGGA+AGG 0.608009 tig0018446:-20375 None:intergenic
TATAGGAAGGAGCCTTCCTG+TGG 0.615801 tig0018446:-20362 None:intergenic
GTCCTGGACCTCCCACAGGA+AGG 0.617086 tig0018446:+20350 Msa1366140:CDS
CCAGAAGATTGAACTTCAAG+GGG 0.618887 tig0018446:-19279 None:intergenic
CCTACAAAAGGCAGATGCTG+CGG 0.625367 tig0018446:+20207 Msa1366140:CDS
TGGCAACTGTGAAAATGTCC+CGG 0.625500 tig0018446:-20915 None:intergenic
ACTTATCAAGGTTGTCTGTG+AGG 0.627193 tig0018446:-20264 None:intergenic
TTCCTGTGGGAGGTCCAGGA+CGG 0.631302 tig0018446:-20348 None:intergenic
AAGTAGAAAATGGTAGTAGG+GGG 0.633244 tig0018446:-19096 None:intergenic
GGTGAGAGAGAGAAGTTGAG+GGG 0.635373 tig0018446:-19075 None:intergenic
GGAATTTGAGGCAAATCTAG+AGG 0.640324 tig0018446:-20938 None:intergenic
AATGTGGCAGTTACTTCAAG+GGG 0.642001 tig0018446:-20677 None:intergenic
GGAAGGAGCCTTCCTGTGGG+AGG 0.648424 tig0018446:-20358 None:intergenic
GCTGATACCCGCGTCACCAG+AGG 0.655148 tig0018446:+21022 Msa1366140:CDS
GCTCCCACCTAGAGTACGAG+AGG 0.667203 tig0018446:-20326 None:intergenic
ATTTGAGGCAAATCTAGAGG+TGG 0.671293 tig0018446:-20935 None:intergenic
GTGGCAGTTACTTCAAGGGG+CGG 0.672835 tig0018446:-20674 None:intergenic
ATAGGAAGGAGCCTTCCTGT+GGG 0.683855 tig0018446:-20361 None:intergenic
AAGGAACTTGAAGAAGCTGG+AGG 0.698611 tig0018446:+20232 Msa1366140:CDS
TGTCCCGGTTGTCTTCACTG+TGG 0.714687 tig0018446:-20900 None:intergenic
CAGAAGATTGAACTTCAAGG+GGG 0.762152 tig0018446:-19278 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATTGCATAATAAAAAT+AGG + tig0018446:19432-19451 Msa1366140:intron 10.0%
!! ATAATTGCATAATAAAAATA+GGG + tig0018446:19433-19452 Msa1366140:intron 10.0%
!! AAAATATATAGATATAGTAT+AGG + tig0018446:19489-19508 Msa1366140:intron 10.0%
!! ATTGTCATTAAAATATATTT+AGG + tig0018446:19577-19596 Msa1366140:intron 10.0%
!! TATAAGTATTTATCATATAA+GGG + tig0018446:19843-19862 Msa1366140:intron 10.0%
!! TAATTGCATAATAAAAATAG+GGG + tig0018446:19434-19453 Msa1366140:intron 15.0%
!!! TATATATTTTTGTTTTGCAA+GGG - tig0018446:19479-19498 None:intergenic 15.0%
!! GTATAAGTATTTATCATATA+AGG + tig0018446:19842-19861 Msa1366140:intron 15.0%
!! ATAAGTATTTATCATATAAG+GGG + tig0018446:19844-19863 Msa1366140:intron 15.0%
!! AAATATTACATCATTATATC+AGG - tig0018446:20415-20434 None:intergenic 15.0%
!!! ACATTTGATAAACATATTTT+TGG - tig0018446:20548-20567 None:intergenic 15.0%
!!! TTTTTATGATAGTATTGTAT+TGG + tig0018446:21092-21111 Msa1366140:three_prime_UTR 15.0%
!! TATAAACAAATATTCCTTTA+AGG - tig0018446:21210-21229 None:intergenic 15.0%
!! TGTTTATAGATAATTACATA+TGG + tig0018446:21222-21241 Msa1366140:three_prime_UTR 15.0%
!!! AACTTTAATTTCAAAGTAAT+TGG - tig0018446:21293-21312 None:intergenic 15.0%
!!! CTTTTGTTTGACAAATTAAA+TGG + tig0018446:19353-19372 Msa1366140:intron 20.0%
!!! CTATATATTTTTGTTTTGCA+AGG - tig0018446:19480-19499 None:intergenic 20.0%
!!! ACTTAAGTATCTAAGTTTTA+TGG + tig0018446:19536-19555 Msa1366140:intron 20.0%
!! TGGATAAATAACTTGATTTA+GGG + tig0018446:19607-19626 Msa1366140:intron 20.0%
!!! AATAAGTTGAAAACAACTTA+TGG + tig0018446:19936-19955 Msa1366140:intron 20.0%
!!! ATTATGTTTTAGTCTCATTT+CGG + tig0018446:20500-20519 Msa1366140:intron 20.0%
!!! CAAAGATTTTGATAATATAG+TGG + tig0018446:20622-20641 Msa1366140:CDS 20.0%
!! TGTAACATATTTAACCTTAA+AGG + tig0018446:21193-21212 Msa1366140:three_prime_UTR 20.0%
!! AATTTAATATCAAAGCTGTT+AGG - tig0018446:21356-21375 None:intergenic 20.0%
! AAAATAGGGGAAATAGTTAT+AGG + tig0018446:19447-19466 Msa1366140:intron 25.0%
! AATCAAGTTATTTATCCAGA+GGG - tig0018446:19605-19624 None:intergenic 25.0%
! AAATCAAGTTATTTATCCAG+AGG - tig0018446:19606-19625 None:intergenic 25.0%
! CTGGATAAATAACTTGATTT+AGG + tig0018446:19606-19625 Msa1366140:intron 25.0%
! TAGATTATACGAAAACAGTT+TGG + tig0018446:19720-19739 Msa1366140:intron 25.0%
! GGTTATGTATAAGTTGTAAA+CGG + tig0018446:19865-19884 Msa1366140:intron 25.0%
!!! ACTGTTTTGTTTTTGCTATT+AGG + tig0018446:20574-20593 Msa1366140:intron 25.0%
TGTGGAAGAGATTAGATTAA+TGG - tig0018446:19021-19040 None:intergenic 30.0%
AGAAGTAGAAAATGGTAGTA+GGG - tig0018446:19101-19120 None:intergenic 30.0%
AAGAAGTAGAAAATGGTAGT+AGG - tig0018446:19102-19121 None:intergenic 30.0%
CAAGAACAAGAAGTAGAAAA+TGG - tig0018446:19109-19128 None:intergenic 30.0%
ATCAATGTTCTTACTCCAAA+GGG + tig0018446:19151-19170 Msa1366140:CDS 30.0%
TCAAAAGGATTAGAAGGAAT+TGG - tig0018446:19250-19269 None:intergenic 30.0%
GTAGAATCAAAAGGATTAGA+AGG - tig0018446:19256-19275 None:intergenic 30.0%
ATCAAGTTATTTATCCAGAG+GGG - tig0018446:19604-19623 None:intergenic 30.0%
! AACTTGATTTAGGGTTTGTT+TGG + tig0018446:19616-19635 Msa1366140:intron 30.0%
! TTTAGGGTTTGTTTGGAATT+TGG + tig0018446:19623-19642 Msa1366140:intron 30.0%
! TAATCACTTGCTACACTATT+TGG + tig0018446:19675-19694 Msa1366140:intron 30.0%
! AATCACTTGCTACACTATTT+GGG + tig0018446:19676-19695 Msa1366140:intron 30.0%
TTACTGTATCAGAGAGTTTA+TGG - tig0018446:19980-19999 None:intergenic 30.0%
ATCCTTATGTAGTTGTGTAA+GGG - tig0018446:20036-20055 None:intergenic 30.0%
AATCCTTATGTAGTTGTGTA+AGG - tig0018446:20037-20056 None:intergenic 30.0%
! ACACAACTACATAAGGATTT+TGG + tig0018446:20038-20057 Msa1366140:intron 30.0%
!! ACTACATAAGGATTTTGGAA+TGG + tig0018446:20043-20062 Msa1366140:intron 30.0%
AAATGAAGAAGACCTACAAA+AGG + tig0018446:20195-20214 Msa1366140:CDS 30.0%
TTGTTCATAACTATCTTTCC+TGG + tig0018446:20442-20461 Msa1366140:intron 30.0%
ATTGGAGACTAAAACTGAAA+AGG - tig0018446:21275-21294 None:intergenic 30.0%
GAGATATAACACAAAGTCAT+TGG + tig0018446:21320-21339 Msa1366140:three_prime_UTR 30.0%
!!! TCTCTTCCACACTTTTTTCA+TGG + tig0018446:19030-19049 Msa1366140:exon 35.0%
AAGTAGAAAATGGTAGTAGG+GGG - tig0018446:19099-19118 None:intergenic 35.0%
GAAGTAGAAAATGGTAGTAG+GGG - tig0018446:19100-19119 None:intergenic 35.0%
! CTTGTTCTTGTTTCTTTCCT+AGG + tig0018446:19119-19138 Msa1366140:CDS 35.0%
CATCAATGTTCTTACTCCAA+AGG + tig0018446:19150-19169 Msa1366140:CDS 35.0%
GGCTTAATATGTTTACCCTT+TGG - tig0018446:19169-19188 None:intergenic 35.0%
GAAGCTGATATTTCAATCTC+TGG + tig0018446:19217-19236 Msa1366140:CDS 35.0%
ACCAGAAGATTGAACTTCAA+GGG - tig0018446:19283-19302 None:intergenic 35.0%
! TCTCATTAGCTTAGCTTCTT+TGG + tig0018446:19313-19332 Msa1366140:intron 35.0%
ACTAATCATGCACTCAACAT+GGG - tig0018446:19409-19428 None:intergenic 35.0%
AACTAATCATGCACTCAACA+TGG - tig0018446:19410-19429 None:intergenic 35.0%
TCAAGTTATTTATCCAGAGG+GGG - tig0018446:19603-19622 None:intergenic 35.0%
TTGGGATAGCTTATGAAAAC+AGG + tig0018446:19694-19713 Msa1366140:intron 35.0%
ATAAGTTGTAAACGGTCTCA+CGG + tig0018446:19873-19892 Msa1366140:intron 35.0%
ACTGCTTTCATAAGCTATCT+CGG + tig0018446:19901-19920 Msa1366140:intron 35.0%
CAACTTATGGACATGTCATA+AGG + tig0018446:19949-19968 Msa1366140:intron 35.0%
AACCCTTACACAACTACATA+AGG + tig0018446:20031-20050 Msa1366140:intron 35.0%
!!! ACATAAGGATTTTGGAATGG+TGG + tig0018446:20046-20065 Msa1366140:intron 35.0%
ATCTTCCTTGCAACTTATCA+AGG - tig0018446:20279-20298 None:intergenic 35.0%
TTGATAAGTTGCAAGGAAGA+TGG + tig0018446:20278-20297 Msa1366140:CDS 35.0%
!! TAATATAGTGGACCTTCAGT+TGG + tig0018446:20634-20653 Msa1366140:CDS 35.0%
!! AATATAGTGGACCTTCAGTT+GGG + tig0018446:20635-20654 Msa1366140:CDS 35.0%
TAATGTGGCAGTTACTTCAA+GGG - tig0018446:20681-20700 None:intergenic 35.0%
CTCAAATTTGTGAGCTAATG+TGG - tig0018446:20696-20715 None:intergenic 35.0%
TGCTTTCTACTGCATATACA+TGG + tig0018446:20733-20752 Msa1366140:intron 35.0%
ACACTTAAACAAAAAGCCCT+AGG - tig0018446:21176-21195 None:intergenic 35.0%
GCTTTCACAATAAGGGATGA+AGG - tig0018446:19190-19209 None:intergenic 40.0%
AGCAGCAGCTTTCACAATAA+GGG - tig0018446:19197-19216 None:intergenic 40.0%
AAGGGGGAAGTAGAATCAAA+AGG - tig0018446:19265-19284 None:intergenic 40.0%
CAGAAGATTGAACTTCAAGG+GGG - tig0018446:19281-19300 None:intergenic 40.0%
CCAGAAGATTGAACTTCAAG+GGG - tig0018446:19282-19301 None:intergenic 40.0%
GACCAGAAGATTGAACTTCA+AGG - tig0018446:19284-19303 None:intergenic 40.0%
AAATATATTTAGGCCCCCTC+TGG + tig0018446:19587-19606 Msa1366140:intron 40.0%
ACTTGTTTGAGCGTATCTAC+TGG + tig0018446:19650-19669 Msa1366140:intron 40.0%
ATAAGCCCGTTTATCTGAAC+AGG + tig0018446:19806-19825 Msa1366140:intron 40.0%
TAAGCCCGTTTATCTGAACA+GGG + tig0018446:19807-19826 Msa1366140:intron 40.0%
! TAGTTGTGTAAGGGTTTGCT+TGG - tig0018446:20027-20046 None:intergenic 40.0%
ACTTATCAAGGTTGTCTGTG+AGG - tig0018446:20267-20286 None:intergenic 40.0%
GACAACCTTGATAAGTTGCA+AGG + tig0018446:20271-20290 Msa1366140:CDS 40.0%
AATGTGGCAGTTACTTCAAG+GGG - tig0018446:20680-20699 None:intergenic 40.0%
CTAATGTGGCAGTTACTTCA+AGG - tig0018446:20682-20701 None:intergenic 40.0%
ACAAACCACTCACAGTAAAG+AGG - tig0018446:20837-20856 None:intergenic 40.0%
! TGAGTGGTTTGTGATGATTC+AGG + tig0018446:20845-20864 Msa1366140:intron 40.0%
AAAACCACAGTGAAGACAAC+CGG + tig0018446:20896-20915 Msa1366140:CDS 40.0%
! ATTTGAGGCAAATCTAGAGG+TGG - tig0018446:20938-20957 None:intergenic 40.0%
! GGAATTTGAGGCAAATCTAG+AGG - tig0018446:20941-20960 None:intergenic 40.0%
! CTCAATGCATCTGGAATTTG+AGG - tig0018446:20953-20972 None:intergenic 40.0%
CTCAAATTCCAGATGCATTG+AGG + tig0018446:20951-20970 Msa1366140:CDS 40.0%
TTGAGGCCACAATCTAATAG+AGG + tig0018446:20968-20987 Msa1366140:CDS 40.0%
CCACTTCCTCTATTAGATTG+TGG - tig0018446:20977-20996 None:intergenic 40.0%
CCACAATCTAATAGAGGAAG+TGG + tig0018446:20974-20993 Msa1366140:CDS 40.0%
GGGAAGCCATGAAAAAAGTG+TGG - tig0018446:19039-19058 None:intergenic 45.0%
ACATTGATGCTGTTGCTCCT+AGG - tig0018446:19139-19158 None:intergenic 45.0%
CAGCAGCAGCTTTCACAATA+AGG - tig0018446:19198-19217 None:intergenic 45.0%
CCCCTTGAAGTTCAATCTTC+TGG + tig0018446:19279-19298 Msa1366140:CDS 45.0%
CTTGCCCTGTTCAGATAAAC+GGG - tig0018446:19814-19833 None:intergenic 45.0%
GCTTGCCCTGTTCAGATAAA+CGG - tig0018446:19815-19834 None:intergenic 45.0%
GCTAAGGAACTTGAAGAAGC+TGG + tig0018446:20229-20248 Msa1366140:CDS 45.0%
AAGGAACTTGAAGAAGCTGG+AGG + tig0018446:20232-20251 Msa1366140:CDS 45.0%
AGGCTCCTTCCTATAACTCT+TGG + tig0018446:20370-20389 Msa1366140:CDS 45.0%
CCTGTCCAAGAGTTATAGGA+AGG - tig0018446:20378-20397 None:intergenic 45.0%
CCTTCCTATAACTCTTGGAC+AGG + tig0018446:20375-20394 Msa1366140:CDS 45.0%
CAGACCTGTCCAAGAGTTAT+AGG - tig0018446:20382-20401 None:intergenic 45.0%
GGAGATCAAAGCACACACAT+AGG - tig0018446:20527-20546 None:intergenic 45.0%
GCTCACAAATTTGAGCTCGT+AGG + tig0018446:20701-20720 Msa1366140:CDS 45.0%
AACCACTCACAGTAAAGAGG+CGG - tig0018446:20834-20853 None:intergenic 45.0%
AAACCACAGTGAAGACAACC+GGG + tig0018446:20897-20916 Msa1366140:CDS 45.0%
TGGCAACTGTGAAAATGTCC+CGG - tig0018446:20918-20937 None:intergenic 45.0%
GATATACCCAACCCACACTA+TGG + tig0018446:21146-21165 Msa1366140:three_prime_UTR 45.0%
GGGGTGAAGAAGGAGATTGA+GGG - tig0018446:19059-19078 None:intergenic 50.0%
AGGGGTGAAGAAGGAGATTG+AGG - tig0018446:19060-19079 None:intergenic 50.0%
GAGAAGTTGAGGGGTGAAGA+AGG - tig0018446:19069-19088 None:intergenic 50.0%
GGTGAGAGAGAGAAGTTGAG+GGG - tig0018446:19078-19097 None:intergenic 50.0%
GGGTGAGAGAGAGAAGTTGA+GGG - tig0018446:19079-19098 None:intergenic 50.0%
GCTGTTGCTGGGCTAAATAG+AGG + tig0018446:20163-20182 Msa1366140:CDS 50.0%
CCTACAAAAGGCAGATGCTG+CGG + tig0018446:20207-20226 Msa1366140:CDS 50.0%
TTCTCCTCTCGTACTCTAGG+TGG + tig0018446:20322-20341 Msa1366140:CDS 50.0%
TCTCCTCTCGTACTCTAGGT+GGG + tig0018446:20323-20342 Msa1366140:CDS 50.0%
ATAGGAAGGAGCCTTCCTGT+GGG - tig0018446:20364-20383 None:intergenic 50.0%
TATAGGAAGGAGCCTTCCTG+TGG - tig0018446:20365-20384 None:intergenic 50.0%
GTTGCTCAGTTGCAACTTCC+AGG - tig0018446:20463-20482 None:intergenic 50.0%
GATTGTGGCCTCAATGCATC+TGG - tig0018446:20962-20981 None:intergenic 50.0%
AGGAGATAGAGGCGAGCTAA+GGG + tig0018446:21042-21061 Msa1366140:CDS 50.0%
GGGGTGAGAGAGAGAAGTTG+AGG - tig0018446:19080-19099 None:intergenic 55.0%
!! ATGCTGCAGAGTGCTGTTGC+TGG + tig0018446:20151-20170 Msa1366140:intron 55.0%
!! TGCTGCAGAGTGCTGTTGCT+GGG + tig0018446:20152-20171 Msa1366140:intron 55.0%
! CCGCAGCATCTGCCTTTTGT+AGG - tig0018446:20210-20229 None:intergenic 55.0%
AAAGGCAGATGCTGCGGCTA+AGG + tig0018446:20213-20232 Msa1366140:CDS 55.0%
GCGTTCTCCTCTCGTACTCT+AGG + tig0018446:20319-20338 Msa1366140:CDS 55.0%
ACCTTCAGTTGGGTGCTCCA+TGG + tig0018446:20645-20664 Msa1366140:CDS 55.0%
GTTACTTCAAGGGGCGGTAG+AGG - tig0018446:20671-20690 None:intergenic 55.0%
GTGGCAGTTACTTCAAGGGG+CGG - tig0018446:20677-20696 None:intergenic 55.0%
GACCGCCTCTTTACTGTGAG+TGG + tig0018446:20829-20848 Msa1366140:intron 55.0%
TGTCCCGGTTGTCTTCACTG+TGG - tig0018446:20903-20922 None:intergenic 55.0%
! TCTATCTCCTCTGGTGACGC+GGG - tig0018446:21032-21051 None:intergenic 55.0%
! CTCTATCTCCTCTGGTGACG+CGG - tig0018446:21033-21052 None:intergenic 55.0%
TAGCTCGCCTCTATCTCCTC+TGG - tig0018446:21041-21060 None:intergenic 55.0%
GAGGAGATAGAGGCGAGCTA+AGG + tig0018446:21041-21060 Msa1366140:CDS 55.0%
GGAGCTCCATAGTGTGGGTT+GGG - tig0018446:21155-21174 None:intergenic 55.0%
AGGAGCTCCATAGTGTGGGT+TGG - tig0018446:21156-21175 None:intergenic 55.0%
ACCCACACTATGGAGCTCCT+AGG + tig0018446:21156-21175 Msa1366140:three_prime_UTR 55.0%
CCCTAGGAGCTCCATAGTGT+GGG - tig0018446:21160-21179 None:intergenic 55.0%
CCCACACTATGGAGCTCCTA+GGG + tig0018446:21157-21176 Msa1366140:three_prime_UTR 55.0%
GCTCCCACCTAGAGTACGAG+AGG - tig0018446:20329-20348 None:intergenic 60.0%
TTCCTGTGGGAGGTCCAGGA+CGG - tig0018446:20351-20370 None:intergenic 60.0%
! GCCATGGAGCACCCAACTGA+AGG - tig0018446:20649-20668 None:intergenic 60.0%
CGCGTCACCAGAGGAGATAG+AGG + tig0018446:21031-21050 Msa1366140:CDS 60.0%
GCCCTAGGAGCTCCATAGTG+TGG - tig0018446:21161-21180 None:intergenic 60.0%
ACTCTAGGTGGGAGCCGTCC+TGG + tig0018446:20334-20353 Msa1366140:CDS 65.0%
GTCCTGGACCTCCCACAGGA+AGG + tig0018446:20350-20369 Msa1366140:CDS 65.0%
AGCCTTCCTGTGGGAGGTCC+AGG - tig0018446:20355-20374 None:intergenic 65.0%
GGAAGGAGCCTTCCTGTGGG+AGG - tig0018446:20361-20380 None:intergenic 65.0%
TCAAGGGGCGGTAGAGGCCA+TGG - tig0018446:20665-20684 None:intergenic 65.0%
GCTGATACCCGCGTCACCAG+AGG + tig0018446:21022-21041 Msa1366140:CDS 65.0%
AGCCGTCCTGGACCTCCCAC+AGG + tig0018446:20346-20365 Msa1366140:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0018446 gene 18909 21398 18909 ID=Msa1366140;Name=Msa1366140
tig0018446 mRNA 18909 21398 18909 ID=Msa1366140-mRNA-1;Parent=Msa1366140;Name=Msa1366140-mRNA-1;_AED=0.06;_eAED=0.06;_QI=140|1|1|1|1|1|4|317|276
tig0018446 exon 18909 19300 18909 ID=Msa1366140-mRNA-1:exon:14968;Parent=Msa1366140-mRNA-1
tig0018446 exon 20160 20396 20160 ID=Msa1366140-mRNA-1:exon:14969;Parent=Msa1366140-mRNA-1
tig0018446 exon 20596 20722 20596 ID=Msa1366140-mRNA-1:exon:14970;Parent=Msa1366140-mRNA-1
tig0018446 exon 20867 21398 20867 ID=Msa1366140-mRNA-1:exon:14971;Parent=Msa1366140-mRNA-1
tig0018446 five_prime_UTR 18909 19048 18909 ID=Msa1366140-mRNA-1:five_prime_utr;Parent=Msa1366140-mRNA-1
tig0018446 CDS 19049 19300 19049 ID=Msa1366140-mRNA-1:cds;Parent=Msa1366140-mRNA-1
tig0018446 CDS 20160 20396 20160 ID=Msa1366140-mRNA-1:cds;Parent=Msa1366140-mRNA-1
tig0018446 CDS 20596 20722 20596 ID=Msa1366140-mRNA-1:cds;Parent=Msa1366140-mRNA-1
tig0018446 CDS 20867 21081 20867 ID=Msa1366140-mRNA-1:cds;Parent=Msa1366140-mRNA-1
tig0018446 three_prime_UTR 21082 21398 21082 ID=Msa1366140-mRNA-1:three_prime_utr;Parent=Msa1366140-mRNA-1
Gene Sequence

>Msa1366140

ATGGCTTCCCTCAATCTCCTTCTTCACCCCTCAACTTCTCTCTCTCACCCCCTACTACCATTTTCTACTTCTTGTTCTTGTTTCTTTCCTAGGAGCAACAGCATCAATGTTCTTACTCCAAAGGGTAAACATATTAAGCCTTCATCCCTTATTGTGAAAGCTGCTGCTGAAGCTGATATTTCAATCTCTGGCTCTATTCCAATTCCTTCTAATCCTTTTGATTCTACTTCCCCCTTGAAGTTCAATCTTCTGAGTGCTGTTGCTGGGCTAAATAGAGGTCTTGCTGCAAATGAAGAAGACCTACAAAAGGCAGATGCTGCGGCTAAGGAACTTGAAGAAGCTGGAGGATTAGTAGACCTCACAGACAACCTTGATAAGTTGCAAGGAAGATGGAAACTGATATATAGCAGCGCGTTCTCCTCTCGTACTCTAGGTGGGAGCCGTCCTGGACCTCCCACAGGAAGGCTCCTTCCTATAACTCTTGGACAGGTTTTTCAACGAATTGACATCTTAAGCAAAGATTTTGATAATATAGTGGACCTTCAGTTGGGTGCTCCATGGCCTCTACCGCCCCTTGAAGTAACTGCCACATTAGCTCACAAATTTGAGCTCGTAGGATCTTCGAAGATCAAGATAATATTTGAGAAAACCACAGTGAAGACAACCGGGACATTTTCACAGTTGCCACCTCTAGATTTGCCTCAAATTCCAGATGCATTGAGGCCACAATCTAATAGAGGAAGTGGTGATTTTGAAGTTACATATCTTGACGCTGATACCCGCGTCACCAGAGGAGATAGAGGCGAGCTAAGGGTCTTTGTGATTGCATAA

Protein sequence

>Msa1366140

MASLNLLLHPSTSLSHPLLPFSTSCSCFFPRSNSINVLTPKGKHIKPSSLIVKAAAEADISISGSIPIPSNPFDSTSPLKFNLLSAVAGLNRGLAANEEDLQKADAAAKELEEAGGLVDLTDNLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDILSKDFDNIVDLQLGAPWPLPPLEVTATLAHKFELVGSSKIKIIFEKTTVKTTGTFSQLPPLDLPQIPDALRPQSNRGSGDFEVTYLDADTRVTRGDRGELRVFVIA*