Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306370 | XP_013451351.1 | 86.580 | 231 | 19 | 2 | 1 | 219 | 1 | 231 | 3.47e-129 | 386 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306370 | sp|Q67Y69|WDL7_ARATH | 57.333 | 75 | 30 | 1 | 21 | 95 | 12 | 84 | 5.67e-18 | 85.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306370 | A0A072U7R9 | 86.580 | 231 | 19 | 2 | 1 | 219 | 1 | 231 | 1.66e-129 | 386 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001940 | Msa0306370 | 0.803861 | 2.848252e-49 | -8.615850e-47 |
| Msa0005890 | Msa0306370 | 0.800102 | 1.686665e-48 | -8.615850e-47 |
| Msa0018000 | Msa0306370 | 0.816261 | 6.058517e-52 | -8.615850e-47 |
| Msa0022550 | Msa0306370 | 0.818194 | 2.226094e-52 | -8.615850e-47 |
| Msa0022750 | Msa0306370 | -0.802287 | 6.025629e-49 | -8.615850e-47 |
| Msa0024550 | Msa0306370 | 0.806461 | 8.134184e-50 | -8.615850e-47 |
| Msa0039250 | Msa0306370 | 0.807846 | 4.140186e-50 | -8.615850e-47 |
| Msa0049790 | Msa0306370 | 0.810631 | 1.047273e-50 | -8.615850e-47 |
| Msa0061340 | Msa0306370 | 0.800403 | 1.465279e-48 | -8.615850e-47 |
| Msa0081520 | Msa0306370 | 0.815240 | 1.023164e-51 | -8.615850e-47 |
| Msa0094850 | Msa0306370 | 0.816248 | 6.099008e-52 | -8.615850e-47 |
| Msa0097770 | Msa0306370 | 0.816551 | 5.216523e-52 | -8.615850e-47 |
| Msa0120400 | Msa0306370 | 0.809967 | 1.456069e-50 | -8.615850e-47 |
| Msa0133720 | Msa0306370 | 0.802618 | 5.151725e-49 | -8.615850e-47 |
| Msa0152400 | Msa0306370 | 0.810325 | 1.219521e-50 | -8.615850e-47 |
| Msa0173890 | Msa0306370 | 0.802804 | 4.714867e-49 | -8.615850e-47 |
| Msa0181230 | Msa0306370 | 0.803346 | 3.642542e-49 | -8.615850e-47 |
| Msa0188150 | Msa0306370 | 0.812732 | 3.656956e-51 | -8.615850e-47 |
| Msa0223080 | Msa0306370 | 0.816197 | 6.262073e-52 | -8.615850e-47 |
| Msa0225860 | Msa0306370 | 0.823945 | 1.053606e-53 | -8.615850e-47 |
| Msa0237210 | Msa0306370 | 0.800885 | 1.168280e-48 | -8.615850e-47 |
| Msa0254790 | Msa0306370 | 0.825909 | 3.623936e-54 | -8.615850e-47 |
| Msa0300270 | Msa0306370 | 0.839442 | 1.580721e-57 | -8.615850e-47 |
| Msa0300320 | Msa0306370 | 0.846668 | 1.879627e-59 | -8.615850e-47 |
| Msa0302160 | Msa0306370 | 0.816823 | 4.534618e-52 | -8.615850e-47 |
| Msa0305700 | Msa0306370 | 0.800829 | 1.199195e-48 | -8.615850e-47 |
| Msa0306370 | Msa0317730 | 0.811147 | 8.096827e-51 | -8.615850e-47 |
| Msa0306370 | Msa0337700 | 0.820040 | 8.461801e-53 | -8.615850e-47 |
| Msa0306370 | Msa0339490 | 0.822399 | 2.418364e-53 | -8.615850e-47 |
| Msa0306370 | Msa0341690 | 0.811037 | 8.552663e-51 | -8.615850e-47 |
| Msa0306370 | Msa0344930 | 0.803183 | 3.936867e-49 | -8.615850e-47 |
| Msa0306370 | Msa0345330 | 0.804495 | 2.101669e-49 | -8.615850e-47 |
| Msa0306370 | Msa0372810 | 0.812462 | 4.189197e-51 | -8.615850e-47 |
| Msa0306370 | Msa0378720 | 0.823237 | 1.542962e-53 | -8.615850e-47 |
| Msa0306370 | Msa0378970 | 0.802260 | 6.103524e-49 | -8.615850e-47 |
| Msa0306370 | Msa0385390 | 0.807841 | 4.151352e-50 | -8.615850e-47 |
| Msa0306370 | Msa0418190 | 0.801206 | 1.004323e-48 | -8.615850e-47 |
| Msa0306370 | Msa0428580 | 0.805469 | 1.315300e-49 | -8.615850e-47 |
| Msa0306370 | Msa0430750 | 0.817531 | 3.141999e-52 | -8.615850e-47 |
| Msa0306370 | Msa0467430 | 0.823549 | 1.304724e-53 | -8.615850e-47 |
| Msa0306370 | Msa0474730 | 0.811701 | 6.137144e-51 | -8.615850e-47 |
| Msa0306370 | Msa0474940 | 0.800057 | 1.722737e-48 | -8.615850e-47 |
| Msa0306370 | Msa0483100 | 0.800465 | 1.422879e-48 | -8.615850e-47 |
| Msa0306370 | Msa0574390 | 0.804302 | 2.305754e-49 | -8.615850e-47 |
| Msa0306370 | Msa0576680 | 0.803959 | 2.717293e-49 | -8.615850e-47 |
| Msa0306370 | Msa0580370 | 0.833141 | 6.325176e-56 | -8.615850e-47 |
| Msa0306370 | Msa0582480 | 0.802287 | 6.025325e-49 | -8.615850e-47 |
| Msa0306370 | Msa0597790 | 0.805913 | 1.061178e-49 | -8.615850e-47 |
| Msa0306370 | Msa0614000 | 0.803959 | 2.717041e-49 | -8.615850e-47 |
| Msa0306370 | Msa0620230 | 0.802090 | 6.617653e-49 | -8.615850e-47 |
| Msa0306370 | Msa0638480 | 0.824385 | 8.307861e-54 | -8.615850e-47 |
| Msa0306370 | Msa0697160 | 0.834549 | 2.810485e-56 | -8.615850e-47 |
| Msa0306370 | Msa0710270 | 0.819786 | 9.674850e-53 | -8.615850e-47 |
| Msa0306370 | Msa0739730 | 0.821260 | 4.437716e-53 | -8.615850e-47 |
| Msa0306370 | Msa0765240 | 0.809342 | 1.984554e-50 | -8.615850e-47 |
| Msa0306370 | Msa0795870 | 0.827770 | 1.302083e-54 | -8.615850e-47 |
| Msa0306370 | Msa0833650 | 0.827249 | 1.735990e-54 | -8.615850e-47 |
| Msa0306370 | Msa0861510 | 0.831734 | 1.410843e-55 | -8.615850e-47 |
| Msa0306370 | Msa0861530 | 0.826383 | 2.796000e-54 | -8.615850e-47 |
| Msa0306370 | Msa0861600 | 0.831468 | 1.641529e-55 | -8.615850e-47 |
| Msa0306370 | Msa0866520 | 0.802270 | 6.076028e-49 | -8.615850e-47 |
| Msa0306370 | Msa0870550 | 0.800630 | 1.316828e-48 | -8.615850e-47 |
| Msa0306370 | Msa0903690 | 0.809047 | 2.295078e-50 | -8.615850e-47 |
| Msa0306370 | Msa0944660 | 0.810467 | 1.136272e-50 | -8.615850e-47 |
| Msa0306370 | Msa0967380 | 0.855666 | 5.411964e-62 | -8.615850e-47 |
| Msa0306370 | Msa0973160 | 0.802832 | 4.653088e-49 | -8.615850e-47 |
| Msa0306370 | Msa1000920 | 0.812438 | 4.239491e-51 | -8.615850e-47 |
| Msa0306370 | Msa1005870 | 0.814611 | 1.410761e-51 | -8.615850e-47 |
| Msa0306370 | Msa1010070 | 0.811623 | 6.380913e-51 | -8.615850e-47 |
| Msa0306370 | Msa1043370 | 0.810571 | 1.078841e-50 | -8.615850e-47 |
| Msa0306370 | Msa1078170 | 0.806113 | 9.628825e-50 | -8.615850e-47 |
| Msa0306370 | Msa1092010 | 0.806033 | 1.001103e-49 | -8.615850e-47 |
| Msa0306370 | Msa1102770 | 0.801855 | 7.394991e-49 | -8.615850e-47 |
| Msa0306370 | Msa1123380 | 0.831635 | 1.493201e-55 | -8.615850e-47 |
| Msa0306370 | Msa1132840 | 0.830692 | 2.545144e-55 | -8.615850e-47 |
| Msa0306370 | Msa1139890 | 0.823957 | 1.046773e-53 | -8.615850e-47 |
| Msa0306370 | Msa1198250 | 0.826316 | 2.900234e-54 | -8.615850e-47 |
| Msa0306370 | Msa1200890 | 0.803003 | 4.288375e-49 | -8.615850e-47 |
| Msa0306370 | Msa1208160 | 0.853198 | 2.799623e-61 | -8.615850e-47 |
| Msa0306370 | Msa1208430 | 0.846440 | 2.169599e-59 | -8.615850e-47 |
| Msa0306370 | Msa1219000 | 0.817304 | 3.535184e-52 | -8.615850e-47 |
| Msa0306370 | Msa1221060 | 0.827230 | 1.755058e-54 | -8.615850e-47 |
| Msa0306370 | Msa1228200 | 0.825028 | 5.859273e-54 | -8.615850e-47 |
| Msa0306370 | Msa1236410 | 0.809381 | 1.946249e-50 | -8.615850e-47 |
| Msa0306370 | Msa1258340 | 0.813867 | 2.059734e-51 | -8.615850e-47 |
| Msa0306370 | Msa1267900 | 0.804734 | 1.874250e-49 | -8.615850e-47 |
| Msa0306370 | Msa1276660 | 0.823438 | 1.384737e-53 | -8.615850e-47 |
| Msa0306370 | Msa1298370 | 0.845594 | 3.683555e-59 | -8.615850e-47 |
| Msa0306370 | Msa1303240 | 0.824849 | 6.457099e-54 | -8.615850e-47 |
| Msa0306370 | Msa1303250 | 0.839890 | 1.209064e-57 | -8.615850e-47 |
| Msa0306370 | Msa1320670 | 0.810025 | 1.415084e-50 | -8.615850e-47 |
| Msa0306370 | Msa1330420 | 0.806018 | 1.008270e-49 | -8.615850e-47 |
| Msa0306370 | Msa1332760 | 0.829044 | 6.415802e-55 | -8.615850e-47 |
| Msa0306370 | Msa1356830 | 0.819056 | 1.418719e-52 | -8.615850e-47 |
| Msa0306370 | Msa1361400 | 0.825092 | 5.658627e-54 | -8.615850e-47 |
| Msa0306370 | Msa1361410 | 0.826813 | 2.207317e-54 | -8.615850e-47 |
| Msa0306370 | Msa1366340 | 0.811769 | 5.931994e-51 | -8.615850e-47 |
| Msa0306370 | Msa1373100 | 0.827130 | 1.854284e-54 | -8.615850e-47 |
| Msa0306370 | Msa1383530 | 0.813451 | 2.542773e-51 | -8.615850e-47 |
| Msa0306370 | Msa1418260 | 0.815374 | 9.550220e-52 | -8.615850e-47 |
| Msa0306370 | Msa1422950 | 0.826672 | 2.385142e-54 | -8.615850e-47 |
| Msa0306370 | Msa1440880 | 0.824622 | 7.305256e-54 | -8.615850e-47 |
| Msa0306370 | Msa1446820 | 0.818126 | 2.306358e-52 | -8.615850e-47 |
| Msa0306370 | Msa1451160 | 0.815459 | 9.145380e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306370 | MtrunA17_Chr6g0458401 | 86.580 | 231 | 19 | 2 | 1 | 219 | 1 | 231 | 3.36e-133 | 386 |
| Msa0306370 | MtrunA17_Chr3g0123121 | 62.376 | 101 | 37 | 1 | 4 | 103 | 5 | 105 | 1.10e-34 | 130 |
| Msa0306370 | MtrunA17_Chr5g0414961 | 61.972 | 71 | 27 | 0 | 26 | 96 | 118 | 188 | 2.67e-24 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306370 | AT3G27350.1 | 65.625 | 96 | 32 | 1 | 1 | 95 | 1 | 96 | 3.06e-39 | 137 |
| Msa0306370 | AT3G27350.2 | 65.625 | 96 | 32 | 1 | 1 | 95 | 1 | 96 | 1.75e-38 | 136 |
| Msa0306370 | AT3G01710.4 | 71.951 | 82 | 16 | 2 | 1 | 81 | 1 | 76 | 6.41e-34 | 124 |
| Msa0306370 | AT3G01710.2 | 71.951 | 82 | 16 | 2 | 1 | 81 | 1 | 76 | 1.35e-33 | 124 |
| Msa0306370 | AT3G01710.1 | 71.951 | 82 | 16 | 2 | 1 | 81 | 1 | 76 | 1.66e-33 | 124 |
| Msa0306370 | AT3G01710.3 | 56.452 | 124 | 43 | 3 | 1 | 119 | 1 | 118 | 2.58e-33 | 124 |
| Msa0306370 | AT5G40700.3 | 63.415 | 82 | 29 | 1 | 1 | 81 | 1 | 82 | 5.88e-33 | 120 |
| Msa0306370 | AT5G40700.1 | 63.415 | 82 | 29 | 1 | 1 | 81 | 1 | 82 | 2.93e-32 | 119 |
| Msa0306370 | AT5G40700.2 | 63.415 | 82 | 29 | 1 | 1 | 81 | 1 | 82 | 2.99e-32 | 119 |
| Msa0306370 | AT3G26050.1 | 53.261 | 92 | 42 | 1 | 1 | 91 | 1 | 92 | 3.58e-28 | 111 |
| Msa0306370 | AT1G70100.5 | 42.202 | 109 | 59 | 1 | 14 | 118 | 9 | 117 | 3.25e-23 | 97.4 |
| Msa0306370 | AT1G70100.1 | 42.202 | 109 | 59 | 1 | 14 | 118 | 9 | 117 | 3.25e-23 | 97.4 |
| Msa0306370 | AT1G70100.2 | 42.202 | 109 | 59 | 1 | 14 | 118 | 9 | 117 | 3.25e-23 | 97.4 |
| Msa0306370 | AT1G70100.4 | 42.593 | 108 | 58 | 1 | 13 | 116 | 8 | 115 | 4.59e-23 | 97.1 |
| Msa0306370 | AT1G70100.3 | 44.545 | 110 | 52 | 2 | 14 | 114 | 9 | 118 | 5.25e-23 | 97.1 |
| Msa0306370 | AT1G70100.6 | 44.545 | 110 | 52 | 2 | 14 | 114 | 9 | 118 | 5.25e-23 | 97.1 |
| Msa0306370 | AT1G24160.1 | 34.597 | 211 | 107 | 8 | 25 | 225 | 30 | 219 | 4.36e-22 | 94.7 |
| Msa0306370 | AT1G24160.2 | 34.597 | 211 | 107 | 8 | 25 | 225 | 30 | 219 | 4.36e-22 | 94.7 |
| Msa0306370 | AT3G27350.3 | 73.214 | 56 | 15 | 0 | 40 | 95 | 1 | 56 | 5.48e-22 | 91.7 |
| Msa0306370 | AT1G70950.1 | 57.333 | 75 | 30 | 1 | 21 | 95 | 12 | 84 | 5.76e-19 | 85.5 |
| Msa0306370 | AT1G23060.1 | 70.588 | 51 | 15 | 0 | 33 | 83 | 22 | 72 | 2.73e-18 | 82.8 |
| Msa0306370 | AT1G23060.4 | 70.588 | 51 | 15 | 0 | 33 | 83 | 22 | 72 | 2.73e-18 | 82.8 |
Find 26 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAGTCATGACACCAATAT+TGG | 0.323466 | 2_3:-65047011 | Msa0306370:CDS |
| CATTACCTGATTGGAATCAT+TGG | 0.331909 | 2_3:+65048632 | None:intergenic |
| CAAACAGGGTCAACATAGTT+TGG | 0.338891 | 2_3:-65048755 | Msa0306370:five_prime_UTR |
| TCATGATTTAGATTCAAATA+TGG | 0.345263 | 2_3:-65047158 | Msa0306370:CDS |
| CTTGGACAATCAATCTCATT+TGG | 0.346035 | 2_3:-65047484 | Msa0306370:CDS |
| AACTAACTAAACAAACAAAC+AGG | 0.348133 | 2_3:-65048770 | None:intergenic |
| TCCAATATTGGTGTCATGAC+TGG | 0.375481 | 2_3:+65047010 | None:intergenic |
| ATTCCAGAAGCATAACAAAA+TGG | 0.379083 | 2_3:+65048657 | None:intergenic |
| TTCTTCTGTGCAACTGAACC+TGG | 0.381974 | 2_3:+65047373 | None:intergenic |
| TGATGGTTGAATTGCAAAAG+AGG | 0.436861 | 2_3:-65047087 | Msa0306370:CDS |
| AGTCACTAGCATGGGAGAAA+TGG | 0.441400 | 2_3:-65047447 | Msa0306370:CDS |
| AATTTCCAATGATTCCAATC+AGG | 0.452229 | 2_3:-65048637 | Msa0306370:intron |
| AATGAGCAACATTACCTGAT+TGG | 0.462526 | 2_3:+65048623 | None:intergenic |
| AAAGTATGAAGTGGTTGTTA+AGG | 0.485920 | 2_3:-65047209 | Msa0306370:CDS |
| GACAATCAATCTCATTTGGA+AGG | 0.493636 | 2_3:-65047480 | Msa0306370:CDS |
| AACAATACAAATCATGCACT+TGG | 0.563437 | 2_3:-65047502 | Msa0306370:CDS |
| GAAAAGTTCAAAGTATGAAG+TGG | 0.570558 | 2_3:-65047218 | Msa0306370:CDS |
| TTTCGGCTTCTTCGACGTAA+CGG | 0.577418 | 2_3:+65047407 | None:intergenic |
| GGAAGAACAAGATGATGCAA+AGG | 0.580859 | 2_3:-65047188 | Msa0306370:CDS |
| CATGTCAGAGTCACTAGCAT+GGG | 0.586091 | 2_3:-65047455 | Msa0306370:CDS |
| GCCGAAAGGTATTCAAAACC+AGG | 0.618947 | 2_3:-65047391 | Msa0306370:CDS |
| TCATGTCAGAGTCACTAGCA+TGG | 0.633171 | 2_3:-65047456 | Msa0306370:CDS |
| GCTTCACAAAGCAATGTCGA+TGG | 0.654817 | 2_3:-65047274 | Msa0306370:CDS |
| GTTACGTCGAAGAAGCCGAA+AGG | 0.665024 | 2_3:-65047405 | Msa0306370:CDS |
| AATATTGGTGTCATGACTGG+AGG | 0.688360 | 2_3:+65047013 | None:intergenic |
| ACTAACTAAACAAACAAACA+GGG | 0.705742 | 2_3:-65048769 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAATTTGTATTGTTTAATT+TGG | - | chr2_3:65047081-65047100 | Msa0306370:CDS | 15.0% |
| !! | AGAAATAAGCATTTATAATT+TGG | - | chr2_3:65047191-65047210 | Msa0306370:CDS | 15.0% |
| !! | TCATGAAAAATTAACTAAAA+GGG | + | chr2_3:65047274-65047293 | None:intergenic | 15.0% |
| !! | TTCATGAAAAATTAACTAAA+AGG | + | chr2_3:65047275-65047294 | None:intergenic | 15.0% |
| !!! | TATGTAAATTGATTTTTGTT+TGG | - | chr2_3:65047823-65047842 | Msa0306370:intron | 15.0% |
| !! | TGAATTTGTATTGTTTAATT+TGG | - | chr2_3:65047081-65047100 | Msa0306370:CDS | 15.0% |
| !! | AGAAATAAGCATTTATAATT+TGG | - | chr2_3:65047191-65047210 | Msa0306370:CDS | 15.0% |
| !! | TCATGAAAAATTAACTAAAA+GGG | + | chr2_3:65047274-65047293 | None:intergenic | 15.0% |
| !! | TTCATGAAAAATTAACTAAA+AGG | + | chr2_3:65047275-65047294 | None:intergenic | 15.0% |
| !!! | TATGTAAATTGATTTTTGTT+TGG | - | chr2_3:65047823-65047842 | Msa0306370:intron | 15.0% |
| !! | AAAAAACAAAACATCATCAT+GGG | - | chr2_3:65046954-65046973 | Msa0306370:CDS | 20.0% |
| !! | ATGAAACAATATATGAATAC+AGG | - | chr2_3:65047168-65047187 | Msa0306370:CDS | 20.0% |
| !!! | TTGCCATAATTTTCAAAATA+TGG | - | chr2_3:65047245-65047264 | Msa0306370:CDS | 20.0% |
| !!! | TGCCATAATTTTCAAAATAT+GGG | - | chr2_3:65047246-65047265 | Msa0306370:CDS | 20.0% |
| !! | CATGAAAAATTAACTAAAAG+GGG | + | chr2_3:65047273-65047292 | None:intergenic | 20.0% |
| !! | TGATTAGATTATGTTGTAAA+CGG | - | chr2_3:65047452-65047471 | Msa0306370:CDS | 20.0% |
| !! | AACTATACATGTTTGATTAA+TGG | + | chr2_3:65047516-65047535 | None:intergenic | 20.0% |
| !!! | TAAACCTTAAGATTTTGTTT+TGG | - | chr2_3:65048040-65048059 | Msa0306370:intron | 20.0% |
| !!! | AAACCTTAAGATTTTGTTTT+GGG | - | chr2_3:65048041-65048060 | Msa0306370:intron | 20.0% |
| !! | TCATGATTTAGATTCAAATA+TGG | - | chr2_3:65048498-65048517 | Msa0306370:intron | 20.0% |
| !!! | AAAGTAACAATGTTGTTTTA+AGG | - | chr2_3:65048539-65048558 | Msa0306370:intron | 20.0% |
| !!! | TTGTTTTAAGGAATTCATTA+AGG | - | chr2_3:65048677-65048696 | Msa0306370:CDS | 20.0% |
| !!! | TGTTTTAAGGAATTCATTAA+GGG | - | chr2_3:65048678-65048697 | Msa0306370:CDS | 20.0% |
| !! | AAAAAACAAAACATCATCAT+GGG | - | chr2_3:65046954-65046973 | Msa0306370:CDS | 20.0% |
| !! | ATGAAACAATATATGAATAC+AGG | - | chr2_3:65047168-65047187 | Msa0306370:CDS | 20.0% |
| !!! | TTGCCATAATTTTCAAAATA+TGG | - | chr2_3:65047245-65047264 | Msa0306370:CDS | 20.0% |
| !!! | TGCCATAATTTTCAAAATAT+GGG | - | chr2_3:65047246-65047265 | Msa0306370:CDS | 20.0% |
| !! | CATGAAAAATTAACTAAAAG+GGG | + | chr2_3:65047273-65047292 | None:intergenic | 20.0% |
| !! | TGATTAGATTATGTTGTAAA+CGG | - | chr2_3:65047452-65047471 | Msa0306370:CDS | 20.0% |
| !! | AACTATACATGTTTGATTAA+TGG | + | chr2_3:65047516-65047535 | None:intergenic | 20.0% |
| !!! | TAAACCTTAAGATTTTGTTT+TGG | - | chr2_3:65048040-65048059 | Msa0306370:intron | 20.0% |
| !!! | AAACCTTAAGATTTTGTTTT+GGG | - | chr2_3:65048041-65048060 | Msa0306370:intron | 20.0% |
| !! | TCATGATTTAGATTCAAATA+TGG | - | chr2_3:65048498-65048517 | Msa0306370:intron | 20.0% |
| !!! | AAAGTAACAATGTTGTTTTA+AGG | - | chr2_3:65048539-65048558 | Msa0306370:intron | 20.0% |
| !!! | TTGTTTTAAGGAATTCATTA+AGG | - | chr2_3:65048677-65048696 | Msa0306370:CDS | 20.0% |
| !!! | TGTTTTAAGGAATTCATTAA+GGG | - | chr2_3:65048678-65048697 | Msa0306370:CDS | 20.0% |
| ! | GAAAAAACAAAACATCATCA+TGG | - | chr2_3:65046953-65046972 | Msa0306370:CDS | 25.0% |
| !!! | ACTAAAATAACTCACTTTTG+AGG | - | chr2_3:65047114-65047133 | Msa0306370:CDS | 25.0% |
| !!! | GTCCCATATTTTGAAAATTA+TGG | + | chr2_3:65047251-65047270 | None:intergenic | 25.0% |
| ! | TTTATAGATGATTGATGAGT+TGG | - | chr2_3:65047355-65047374 | Msa0306370:CDS | 25.0% |
| ! | TTATAGATGATTGATGAGTT+GGG | - | chr2_3:65047356-65047375 | Msa0306370:CDS | 25.0% |
| !! | AAGAATAGTTTAGAGTTGAA+TGG | - | chr2_3:65047536-65047555 | Msa0306370:intron | 25.0% |
| ! | CTCAATAGTTCACATAAAAT+TGG | - | chr2_3:65047739-65047758 | Msa0306370:intron | 25.0% |
| !!! | TTCACATAAAATTGGTTTTG+TGG | - | chr2_3:65047747-65047766 | Msa0306370:intron | 25.0% |
| ! | TGAGACTAAATCAATTCTAT+AGG | - | chr2_3:65047863-65047882 | Msa0306370:intron | 25.0% |
| !! | TGATTCTAAAAGCTAGAATT+TGG | + | chr2_3:65047897-65047916 | None:intergenic | 25.0% |
| ! | ATATGATACAAGTGTATGTT+TGG | + | chr2_3:65047998-65048017 | None:intergenic | 25.0% |
| !!! | GTTTCATAGTTTTTTCAATG+TGG | + | chr2_3:65048119-65048138 | None:intergenic | 25.0% |
| !!! | TGTTTTAAGGAATTCAATGA+TGG | - | chr2_3:65048552-65048571 | Msa0306370:intron | 25.0% |
| ! | GAAAAAACAAAACATCATCA+TGG | - | chr2_3:65046953-65046972 | Msa0306370:CDS | 25.0% |
| !!! | ACTAAAATAACTCACTTTTG+AGG | - | chr2_3:65047114-65047133 | Msa0306370:CDS | 25.0% |
| !!! | GTCCCATATTTTGAAAATTA+TGG | + | chr2_3:65047251-65047270 | None:intergenic | 25.0% |
| ! | TTTATAGATGATTGATGAGT+TGG | - | chr2_3:65047355-65047374 | Msa0306370:CDS | 25.0% |
| ! | TTATAGATGATTGATGAGTT+GGG | - | chr2_3:65047356-65047375 | Msa0306370:CDS | 25.0% |
| !! | AAGAATAGTTTAGAGTTGAA+TGG | - | chr2_3:65047536-65047555 | Msa0306370:intron | 25.0% |
| ! | CTCAATAGTTCACATAAAAT+TGG | - | chr2_3:65047739-65047758 | Msa0306370:intron | 25.0% |
| !!! | TTCACATAAAATTGGTTTTG+TGG | - | chr2_3:65047747-65047766 | Msa0306370:intron | 25.0% |
| ! | TGAGACTAAATCAATTCTAT+AGG | - | chr2_3:65047863-65047882 | Msa0306370:intron | 25.0% |
| !! | TGATTCTAAAAGCTAGAATT+TGG | + | chr2_3:65047897-65047916 | None:intergenic | 25.0% |
| ! | ATATGATACAAGTGTATGTT+TGG | + | chr2_3:65047998-65048017 | None:intergenic | 25.0% |
| !!! | GTTTCATAGTTTTTTCAATG+TGG | + | chr2_3:65048119-65048138 | None:intergenic | 25.0% |
| !!! | TGTTTTAAGGAATTCAATGA+TGG | - | chr2_3:65048552-65048571 | Msa0306370:intron | 25.0% |
| ! | AACATAGTTTGGATCTTTTG+AGG | - | chr2_3:65046912-65046931 | Msa0306370:CDS | 30.0% |
| ! | ATTCCAGAAGCATAACAAAA+TGG | + | chr2_3:65047002-65047021 | None:intergenic | 30.0% |
| AATTTCCAATGATTCCAATC+AGG | - | chr2_3:65047019-65047038 | Msa0306370:CDS | 30.0% | |
| AAGAAGATAGAAGTGATTGA+TGG | + | chr2_3:65047062-65047081 | None:intergenic | 30.0% | |
| ACTTCACTTGTATCATGTAA+TGG | + | chr2_3:65047388-65047407 | None:intergenic | 30.0% | |
| GAATGATGCAAGATTGATTA+TGG | - | chr2_3:65047786-65047805 | Msa0306370:intron | 30.0% | |
| AAATTTGACTCATCGAAAAG+TGG | - | chr2_3:65047970-65047989 | Msa0306370:intron | 30.0% | |
| ACTCCCAAAACAAAATCTTA+AGG | + | chr2_3:65048047-65048066 | None:intergenic | 30.0% | |
| !!! | GATTTTGTTTTGGGAGTATA+TGG | - | chr2_3:65048050-65048069 | Msa0306370:intron | 30.0% |
| AACAATACAAATCATGCACT+TGG | - | chr2_3:65048154-65048173 | Msa0306370:intron | 30.0% | |
| GAAAAGTTCAAAGTATGAAG+TGG | - | chr2_3:65048438-65048457 | Msa0306370:intron | 30.0% | |
| AAAGTATGAAGTGGTTGTTA+AGG | - | chr2_3:65048447-65048466 | Msa0306370:intron | 30.0% | |
| !!! | ACAACTGCTTTTTCCAATAT+TGG | + | chr2_3:65048661-65048680 | None:intergenic | 30.0% |
| !! | TGGAAAAAGCAGTTGTTTTA+AGG | - | chr2_3:65048665-65048684 | Msa0306370:CDS | 30.0% |
| ! | AACATAGTTTGGATCTTTTG+AGG | - | chr2_3:65046912-65046931 | Msa0306370:CDS | 30.0% |
| ! | ATTCCAGAAGCATAACAAAA+TGG | + | chr2_3:65047002-65047021 | None:intergenic | 30.0% |
| AATTTCCAATGATTCCAATC+AGG | - | chr2_3:65047019-65047038 | Msa0306370:CDS | 30.0% | |
| AAGAAGATAGAAGTGATTGA+TGG | + | chr2_3:65047062-65047081 | None:intergenic | 30.0% | |
| ACTTCACTTGTATCATGTAA+TGG | + | chr2_3:65047388-65047407 | None:intergenic | 30.0% | |
| GAATGATGCAAGATTGATTA+TGG | - | chr2_3:65047786-65047805 | Msa0306370:intron | 30.0% | |
| AAATTTGACTCATCGAAAAG+TGG | - | chr2_3:65047970-65047989 | Msa0306370:intron | 30.0% | |
| ACTCCCAAAACAAAATCTTA+AGG | + | chr2_3:65048047-65048066 | None:intergenic | 30.0% | |
| !!! | GATTTTGTTTTGGGAGTATA+TGG | - | chr2_3:65048050-65048069 | Msa0306370:intron | 30.0% |
| AACAATACAAATCATGCACT+TGG | - | chr2_3:65048154-65048173 | Msa0306370:intron | 30.0% | |
| GAAAAGTTCAAAGTATGAAG+TGG | - | chr2_3:65048438-65048457 | Msa0306370:intron | 30.0% | |
| AAAGTATGAAGTGGTTGTTA+AGG | - | chr2_3:65048447-65048466 | Msa0306370:intron | 30.0% | |
| !!! | ACAACTGCTTTTTCCAATAT+TGG | + | chr2_3:65048661-65048680 | None:intergenic | 30.0% |
| !! | TGGAAAAAGCAGTTGTTTTA+AGG | - | chr2_3:65048665-65048684 | Msa0306370:CDS | 30.0% |
| !!! | TTTTGAGGTTTCAACGTTGT+TGG | - | chr2_3:65046927-65046946 | Msa0306370:CDS | 35.0% |
| !! | CAACCATTTTGTTATGCTTC+TGG | - | chr2_3:65046996-65047015 | Msa0306370:CDS | 35.0% |
| CATTACCTGATTGGAATCAT+TGG | + | chr2_3:65047027-65047046 | None:intergenic | 35.0% | |
| AATGAGCAACATTACCTGAT+TGG | + | chr2_3:65047036-65047055 | None:intergenic | 35.0% | |
| TCAATGAGTGTCTTGTATTC+AGG | + | chr2_3:65047676-65047695 | None:intergenic | 35.0% | |
| ! | ACAAGACACTCATTGATTGT+CGG | - | chr2_3:65047680-65047699 | Msa0306370:intron | 35.0% |
| CTTGGACAATCAATCTCATT+TGG | - | chr2_3:65048172-65048191 | Msa0306370:intron | 35.0% | |
| GACAATCAATCTCATTTGGA+AGG | - | chr2_3:65048176-65048195 | Msa0306370:intron | 35.0% | |
| !!! | ACCTGGTTTTGAATACCTTT+CGG | + | chr2_3:65048269-65048288 | None:intergenic | 35.0% |
| TGATGGTTGAATTGCAAAAG+AGG | - | chr2_3:65048569-65048588 | Msa0306370:intron | 35.0% | |
| !!! | TTTTGAGGTTTCAACGTTGT+TGG | - | chr2_3:65046927-65046946 | Msa0306370:CDS | 35.0% |
| !! | CAACCATTTTGTTATGCTTC+TGG | - | chr2_3:65046996-65047015 | Msa0306370:CDS | 35.0% |
| CATTACCTGATTGGAATCAT+TGG | + | chr2_3:65047027-65047046 | None:intergenic | 35.0% | |
| AATGAGCAACATTACCTGAT+TGG | + | chr2_3:65047036-65047055 | None:intergenic | 35.0% | |
| TCAATGAGTGTCTTGTATTC+AGG | + | chr2_3:65047676-65047695 | None:intergenic | 35.0% | |
| ! | ACAAGACACTCATTGATTGT+CGG | - | chr2_3:65047680-65047699 | Msa0306370:intron | 35.0% |
| CTTGGACAATCAATCTCATT+TGG | - | chr2_3:65048172-65048191 | Msa0306370:intron | 35.0% | |
| GACAATCAATCTCATTTGGA+AGG | - | chr2_3:65048176-65048195 | Msa0306370:intron | 35.0% | |
| !!! | ACCTGGTTTTGAATACCTTT+CGG | + | chr2_3:65048269-65048288 | None:intergenic | 35.0% |
| TGATGGTTGAATTGCAAAAG+AGG | - | chr2_3:65048569-65048588 | Msa0306370:intron | 35.0% | |
| CAAACAGGGTCAACATAGTT+TGG | - | chr2_3:65046901-65046920 | Msa0306370:CDS | 40.0% | |
| GGAAGAACAAGATGATGCAA+AGG | - | chr2_3:65048468-65048487 | Msa0306370:intron | 40.0% | |
| !! | AATATTGGTGTCATGACTGG+AGG | + | chr2_3:65048646-65048665 | None:intergenic | 40.0% |
| TCCAGTCATGACACCAATAT+TGG | - | chr2_3:65048645-65048664 | Msa0306370:CDS | 40.0% | |
| !! | TCCAATATTGGTGTCATGAC+TGG | + | chr2_3:65048649-65048668 | None:intergenic | 40.0% |
| CAAACAGGGTCAACATAGTT+TGG | - | chr2_3:65046901-65046920 | Msa0306370:CDS | 40.0% | |
| GGAAGAACAAGATGATGCAA+AGG | - | chr2_3:65048468-65048487 | Msa0306370:intron | 40.0% | |
| !! | AATATTGGTGTCATGACTGG+AGG | + | chr2_3:65048646-65048665 | None:intergenic | 40.0% |
| TCCAGTCATGACACCAATAT+TGG | - | chr2_3:65048645-65048664 | Msa0306370:CDS | 40.0% | |
| !! | TCCAATATTGGTGTCATGAC+TGG | + | chr2_3:65048649-65048668 | None:intergenic | 40.0% |
| TCATGTCAGAGTCACTAGCA+TGG | - | chr2_3:65048200-65048219 | Msa0306370:intron | 45.0% | |
| CATGTCAGAGTCACTAGCAT+GGG | - | chr2_3:65048201-65048220 | Msa0306370:intron | 45.0% | |
| AGTCACTAGCATGGGAGAAA+TGG | - | chr2_3:65048209-65048228 | Msa0306370:intron | 45.0% | |
| TTTCGGCTTCTTCGACGTAA+CGG | + | chr2_3:65048252-65048271 | None:intergenic | 45.0% | |
| !! | GCCGAAAGGTATTCAAAACC+AGG | - | chr2_3:65048265-65048284 | Msa0306370:intron | 45.0% |
| TTCTTCTGTGCAACTGAACC+TGG | + | chr2_3:65048286-65048305 | None:intergenic | 45.0% | |
| GCTTCACAAAGCAATGTCGA+TGG | - | chr2_3:65048382-65048401 | Msa0306370:intron | 45.0% | |
| TCATGTCAGAGTCACTAGCA+TGG | - | chr2_3:65048200-65048219 | Msa0306370:intron | 45.0% | |
| CATGTCAGAGTCACTAGCAT+GGG | - | chr2_3:65048201-65048220 | Msa0306370:intron | 45.0% | |
| AGTCACTAGCATGGGAGAAA+TGG | - | chr2_3:65048209-65048228 | Msa0306370:intron | 45.0% | |
| TTTCGGCTTCTTCGACGTAA+CGG | + | chr2_3:65048252-65048271 | None:intergenic | 45.0% | |
| !! | GCCGAAAGGTATTCAAAACC+AGG | - | chr2_3:65048265-65048284 | Msa0306370:intron | 45.0% |
| TTCTTCTGTGCAACTGAACC+TGG | + | chr2_3:65048286-65048305 | None:intergenic | 45.0% | |
| GCTTCACAAAGCAATGTCGA+TGG | - | chr2_3:65048382-65048401 | Msa0306370:intron | 45.0% | |
| !!! | TTATATTTAATTATTGTTTT+TGG | - | chr2_3:65047489-65047508 | Msa0306370:CDS | 5.0% |
| !!! | TTATATTTAATTATTGTTTT+TGG | - | chr2_3:65047489-65047508 | Msa0306370:CDS | 5.0% |
| GTTACGTCGAAGAAGCCGAA+AGG | - | chr2_3:65048251-65048270 | Msa0306370:intron | 50.0% | |
| GTTACGTCGAAGAAGCCGAA+AGG | - | chr2_3:65048251-65048270 | Msa0306370:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 65046898 | 65048780 | 65046898 | ID=Msa0306370;Name=Msa0306370 |
| chr2_3 | mRNA | 65046898 | 65048780 | 65046898 | ID=Msa0306370-mRNA-1;Parent=Msa0306370;Name=Msa0306370-mRNA-1;_AED=0.00;_eAED=0.00;_QI=74|1|0.5|1|1|1|2|0|232 |
| chr2_3 | exon | 65046898 | 65047524 | 65046898 | ID=Msa0306370-mRNA-1:exon:21696;Parent=Msa0306370-mRNA-1 |
| chr2_3 | exon | 65048638 | 65048780 | 65048638 | ID=Msa0306370-mRNA-1:exon:21695;Parent=Msa0306370-mRNA-1 |
| chr2_3 | five_prime_UTR | 65048707 | 65048780 | 65048707 | ID=Msa0306370-mRNA-1:five_prime_utr;Parent=Msa0306370-mRNA-1 |
| chr2_3 | CDS | 65048638 | 65048706 | 65048638 | ID=Msa0306370-mRNA-1:cds;Parent=Msa0306370-mRNA-1 |
| chr2_3 | CDS | 65046898 | 65047524 | 65046898 | ID=Msa0306370-mRNA-1:cds;Parent=Msa0306370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
