Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0329470 | QBH22538.1 | 55.405 | 74 | 32 | 1 | 30 | 102 | 30 | 103 | 6.20e-20 | 94.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0329470 | sp|Q9LXW3|RDL3_ARATH | 41.791 | 67 | 39 | 0 | 27 | 93 | 36 | 102 | 6.94e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037040 | Msa0329470 | -0.802454 | 5.568685e-49 | -8.615850e-47 |
| Msa0042950 | Msa0329470 | -0.813780 | 2.152579e-51 | -8.615850e-47 |
| Msa0047660 | Msa0329470 | -0.811004 | 8.694835e-51 | -8.615850e-47 |
| Msa0069230 | Msa0329470 | -0.805328 | 1.407798e-49 | -8.615850e-47 |
| Msa0079100 | Msa0329470 | -0.805730 | 1.159188e-49 | -8.615850e-47 |
| Msa0081790 | Msa0329470 | -0.801536 | 8.597162e-49 | -8.615850e-47 |
| Msa0086620 | Msa0329470 | -0.821746 | 3.428097e-53 | -8.615850e-47 |
| Msa0089700 | Msa0329470 | -0.808943 | 2.415970e-50 | -8.615850e-47 |
| Msa0123960 | Msa0329470 | -0.800694 | 1.277950e-48 | -8.615850e-47 |
| Msa0127350 | Msa0329470 | -0.813967 | 1.957138e-51 | -8.615850e-47 |
| Msa0136180 | Msa0329470 | -0.803503 | 3.379098e-49 | -8.615850e-47 |
| Msa0175240 | Msa0329470 | -0.804473 | 2.123864e-49 | -8.615850e-47 |
| Msa0208710 | Msa0329470 | -0.805648 | 1.206123e-49 | -8.615850e-47 |
| Msa0264710 | Msa0329470 | 0.809756 | 1.616607e-50 | -8.615850e-47 |
| Msa0291320 | Msa0329470 | 0.878946 | 1.859729e-69 | -8.615850e-47 |
| Msa0302750 | Msa0329470 | 0.809042 | 2.300834e-50 | -8.615850e-47 |
| Msa0329470 | Msa0382050 | -0.800882 | 1.169764e-48 | -8.615850e-47 |
| Msa0329470 | Msa0386230 | -0.809203 | 2.125040e-50 | -8.615850e-47 |
| Msa0329470 | Msa0433890 | -0.812536 | 4.036208e-51 | -8.615850e-47 |
| Msa0329470 | Msa0444770 | -0.822077 | 2.872632e-53 | -8.615850e-47 |
| Msa0329470 | Msa0462240 | -0.830797 | 2.398839e-55 | -8.615850e-47 |
| Msa0329470 | Msa0492330 | -0.801640 | 8.184414e-49 | -8.615850e-47 |
| Msa0329470 | Msa0513580 | -0.801763 | 7.724106e-49 | -8.615850e-47 |
| Msa0329470 | Msa0514630 | -0.814565 | 1.443779e-51 | -8.615850e-47 |
| Msa0329470 | Msa0525180 | -0.832122 | 1.132006e-55 | -8.615850e-47 |
| Msa0329470 | Msa0548420 | 0.833579 | 4.917226e-56 | -8.615850e-47 |
| Msa0329470 | Msa0597370 | -0.812022 | 5.224576e-51 | -8.615850e-47 |
| Msa0329470 | Msa0598470 | -0.805458 | 1.322323e-49 | -8.615850e-47 |
| Msa0329470 | Msa0608250 | -0.800296 | 1.540709e-48 | -8.615850e-47 |
| Msa0329470 | Msa0619030 | -0.801445 | 8.974138e-49 | -8.615850e-47 |
| Msa0329470 | Msa0644340 | 0.852971 | 3.251528e-61 | -8.615850e-47 |
| Msa0329470 | Msa0673620 | -0.807615 | 4.636636e-50 | -8.615850e-47 |
| Msa0329470 | Msa0676570 | -0.804592 | 2.006157e-49 | -8.615850e-47 |
| Msa0329470 | Msa0693050 | -0.800099 | 1.689186e-48 | -8.615850e-47 |
| Msa0329470 | Msa0695250 | -0.800695 | 1.277570e-48 | -8.615850e-47 |
| Msa0329470 | Msa0706790 | -0.839149 | 1.883055e-57 | -8.615850e-47 |
| Msa0329470 | Msa0706860 | -0.829929 | 3.909255e-55 | -8.615850e-47 |
| Msa0329470 | Msa0750200 | -0.806962 | 6.376690e-50 | -8.615850e-47 |
| Msa0329470 | Msa0755480 | -0.800219 | 1.597351e-48 | -8.615850e-47 |
| Msa0329470 | Msa0793130 | -0.800975 | 1.120114e-48 | -8.615850e-47 |
| Msa0329470 | Msa0793530 | -0.821353 | 4.223238e-53 | -8.615850e-47 |
| Msa0329470 | Msa0823480 | -0.809427 | 1.902319e-50 | -8.615850e-47 |
| Msa0329470 | Msa0881880 | -0.808893 | 2.476093e-50 | -8.615850e-47 |
| Msa0329470 | Msa0882480 | -0.803335 | 3.661081e-49 | -8.615850e-47 |
| Msa0329470 | Msa0892820 | -0.803616 | 3.201522e-49 | -8.615850e-47 |
| Msa0329470 | Msa0901660 | -0.805643 | 1.209072e-49 | -8.615850e-47 |
| Msa0329470 | Msa0934150 | -0.800061 | 1.719924e-48 | -8.615850e-47 |
| Msa0329470 | Msa0945160 | -0.803211 | 3.884820e-49 | -8.615850e-47 |
| Msa0329470 | Msa1001930 | -0.801327 | 9.488146e-49 | -8.615850e-47 |
| Msa0329470 | Msa1001940 | -0.800330 | 1.516276e-48 | -8.615850e-47 |
| Msa0329470 | Msa1039440 | -0.841573 | 4.378147e-58 | -8.615850e-47 |
| Msa0329470 | Msa1058550 | -0.809196 | 2.132761e-50 | -8.615850e-47 |
| Msa0329470 | Msa1083620 | -0.803930 | 2.756218e-49 | -8.615850e-47 |
| Msa0329470 | Msa1092770 | -0.803331 | 3.668827e-49 | -8.615850e-47 |
| Msa0329470 | Msa1128520 | -0.842319 | 2.779822e-58 | -8.615850e-47 |
| Msa0329470 | Msa1128610 | -0.803601 | 3.224785e-49 | -8.615850e-47 |
| Msa0329470 | Msa1129510 | -0.808399 | 3.156857e-50 | -8.615850e-47 |
| Msa0329470 | Msa1130150 | -0.807536 | 4.819049e-50 | -8.615850e-47 |
| Msa0329470 | Msa1132250 | -0.813591 | 2.368755e-51 | -8.615850e-47 |
| Msa0329470 | Msa1146010 | 0.806173 | 9.352494e-50 | -8.615850e-47 |
| Msa0329470 | Msa1156100 | -0.804543 | 2.054445e-49 | -8.615850e-47 |
| Msa0329470 | Msa1225560 | 0.816034 | 6.807202e-52 | -8.615850e-47 |
| Msa0329470 | Msa1287100 | -0.802713 | 4.924407e-49 | -8.615850e-47 |
| Msa0329470 | Msa1292140 | 0.804577 | 2.020391e-49 | -8.615850e-47 |
| Msa0329470 | Msa1293040 | -0.805356 | 1.388627e-49 | -8.615850e-47 |
| Msa0329470 | Msa1298170 | -0.801825 | 7.501399e-49 | -8.615850e-47 |
| Msa0329470 | Msa1301280 | -0.806552 | 7.783750e-50 | -8.615850e-47 |
| Msa0329470 | Msa1350130 | -0.820907 | 5.350545e-53 | -8.615850e-47 |
| Msa0329470 | Msa1352600 | -0.835560 | 1.562921e-56 | -8.615850e-47 |
| Msa0329470 | Msa1355540 | 0.810304 | 1.231826e-50 | -8.615850e-47 |
| Msa0329470 | Msa1360070 | -0.806786 | 6.945654e-50 | -8.615850e-47 |
| Msa0329470 | Msa1361580 | -0.810174 | 1.313978e-50 | -8.615850e-47 |
| Msa0329470 | Msa1361670 | -0.801252 | 9.827349e-49 | -8.615850e-47 |
| Msa0329470 | Msa1373420 | -0.801036 | 1.088285e-48 | -8.615850e-47 |
| Msa0329470 | Msa1381340 | -0.834082 | 3.680887e-56 | -8.615850e-47 |
| Msa0329470 | Msa1400830 | -0.811674 | 6.220346e-51 | -8.615850e-47 |
| Msa0329470 | Msa1424250 | -0.802310 | 5.962291e-49 | -8.615850e-47 |
| Msa0329470 | Msa1430460 | -0.818009 | 2.450802e-52 | -8.615850e-47 |
| Msa0329470 | Msa1431510 | -0.807692 | 4.463805e-50 | -8.615850e-47 |
| Msa0329470 | Msa1451200 | -0.800036 | 1.739866e-48 | -8.615850e-47 |
| Msa0329470 | Msa1462210 | -0.823406 | 1.409266e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0329470 | MtrunA17_Chr7g0253751 | 52.500 | 80 | 34 | 1 | 11 | 90 | 24 | 99 | 1.95e-23 | 87.8 |
| Msa0329470 | MtrunA17_Chr3g0142071 | 55.556 | 63 | 28 | 0 | 27 | 89 | 45 | 107 | 2.38e-18 | 79.3 |
| Msa0329470 | MtrunA17_Chr2g0311391 | 54.688 | 64 | 29 | 0 | 33 | 96 | 37 | 100 | 9.34e-17 | 74.3 |
| Msa0329470 | MtrunA17_Chr2g0311471 | 49.206 | 63 | 32 | 0 | 33 | 95 | 37 | 99 | 5.83e-14 | 66.6 |
| Msa0329470 | MtrunA17_Chr2g0311091 | 48.438 | 64 | 33 | 0 | 33 | 96 | 35 | 98 | 7.52e-14 | 64.3 |
| Msa0329470 | MtrunA17_Chr2g0311381 | 48.438 | 64 | 33 | 0 | 32 | 95 | 36 | 99 | 1.18e-13 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0329470 | AT1G09850.1 | 45.833 | 72 | 38 | 1 | 27 | 97 | 27 | 98 | 8.77e-16 | 72.4 |
| Msa0329470 | AT3G43960.1 | 41.791 | 67 | 39 | 0 | 27 | 93 | 36 | 102 | 7.06e-13 | 63.9 |
| Msa0329470 | AT4G35350.1 | 51.515 | 66 | 31 | 1 | 28 | 93 | 47 | 111 | 9.36e-13 | 63.5 |
| Msa0329470 | AT4G35350.2 | 51.515 | 66 | 31 | 1 | 28 | 93 | 47 | 111 | 1.02e-12 | 63.2 |
Find 41 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAATGGAACAACCATAAT+TGG | 0.195557 | 2_4:-43078960 | None:intergenic |
| TTGGTTGTGTTGAGTGATTC+TGG | 0.214560 | 2_4:-43078870 | None:intergenic |
| TGATCAGTTTATGAAATAAA+AGG | 0.223384 | 2_4:-43078476 | None:intergenic |
| TCCATCTTAATATCAATAAA+TGG | 0.249277 | 2_4:+43079215 | Msa0329470:three_prime_UTR |
| GAGGAATTTACGTCCAATTA+TGG | 0.252320 | 2_4:+43078947 | Msa0329470:CDS |
| TAAGATGGAAGTTCAAGATT+TGG | 0.319820 | 2_4:-43079201 | None:intergenic |
| TTTGATTATATTAAAACTAC+TGG | 0.347906 | 2_4:+43079129 | Msa0329470:three_prime_UTR |
| AAACTTCATTGATGTTTGAC+TGG | 0.385671 | 2_4:-43079028 | None:intergenic |
| TTCTTGAAGCTTGGAGTTGG+AGG | 0.392872 | 2_4:-43078612 | None:intergenic |
| TGAGTAATTCAACTCGTAGA+TGG | 0.395615 | 2_4:-43078528 | None:intergenic |
| GTAGCTTCAAAATTTGTCAT+AGG | 0.399302 | 2_4:+43078500 | Msa0329470:five_prime_UTR |
| AGAATAACAAACCGATGGTT+GGG | 0.404177 | 2_4:-43078645 | None:intergenic |
| CTGTTCTTGAAGCTTGGAGT+TGG | 0.411197 | 2_4:-43078615 | None:intergenic |
| CCGGATGATCTTGAAAAGTT+AGG | 0.423858 | 2_4:+43078998 | Msa0329470:CDS |
| TCCATGAAATATTTGAAAAG+TGG | 0.434083 | 2_4:+43078771 | Msa0329470:CDS |
| AGGAATCTGTTCTTGAAGCT+TGG | 0.443942 | 2_4:-43078621 | None:intergenic |
| ACCATTTATTGATATTAAGA+TGG | 0.454456 | 2_4:-43079216 | None:intergenic |
| CAACTATTAACACTTCATCT+TGG | 0.461354 | 2_4:-43079176 | None:intergenic |
| AACGTTGTGTCTCTATTCAA+TGG | 0.463697 | 2_4:+43078571 | Msa0329470:exon |
| GATCAGTTTATGAAATAAAA+GGG | 0.463851 | 2_4:-43078475 | None:intergenic |
| AATTGTGAATATAAGGCTCC+AGG | 0.482310 | 2_4:+43078740 | Msa0329470:intron |
| TGAATATAAGGCTCCAGGTT+CGG | 0.485465 | 2_4:+43078745 | Msa0329470:intron |
| CGAAGGTGAGATCAGAGAAC+TGG | 0.488939 | 2_4:-43078925 | None:intergenic |
| TGATTTCAACGATGTCCATC+CGG | 0.494998 | 2_4:+43078979 | Msa0329470:CDS |
| TAGAATAACAAACCGATGGT+TGG | 0.501861 | 2_4:-43078646 | None:intergenic |
| GTTCTCTGATCTCACCTTCG+AGG | 0.507841 | 2_4:+43078928 | Msa0329470:CDS |
| ATGGACATCGTTGAAATCAA+TGG | 0.510440 | 2_4:-43078975 | None:intergenic |
| CGACAAAACATATTCTTCAA+AGG | 0.513620 | 2_4:+43078805 | Msa0329470:CDS |
| ATTTCATGGATGTCCGAACC+TGG | 0.518460 | 2_4:-43078758 | None:intergenic |
| ATATAATCAAAGGTGGTGAC+AGG | 0.523055 | 2_4:-43079117 | None:intergenic |
| AACTTCATTGATGTTTGACT+GGG | 0.536300 | 2_4:-43079027 | None:intergenic |
| ATTAAAACTACTGGGCTAAG+AGG | 0.546739 | 2_4:+43079138 | Msa0329470:three_prime_UTR |
| GAATAACAAACCGATGGTTG+GGG | 0.564507 | 2_4:-43078644 | None:intergenic |
| TTGATTATATTAAAACTACT+GGG | 0.577047 | 2_4:+43079130 | Msa0329470:three_prime_UTR |
| ACAGATTCCTCCCCAACCAT+CGG | 0.584110 | 2_4:+43078634 | Msa0329470:CDS |
| TGAGATCAGAGAACTGGTTG+AGG | 0.597092 | 2_4:-43078919 | None:intergenic |
| AATATTTGAAAAGTGGTGCA+AGG | 0.602264 | 2_4:+43078778 | Msa0329470:CDS |
| AAAACTACTGGGCTAAGAGG+AGG | 0.615728 | 2_4:+43079141 | Msa0329470:three_prime_UTR |
| TAACAAACCGATGGTTGGGG+AGG | 0.622332 | 2_4:-43078641 | None:intergenic |
| ATTGGACGTAAATTCCTCGA+AGG | 0.638330 | 2_4:-43078942 | None:intergenic |
| ATTGAATAGAGACACAACGT+TGG | 0.690423 | 2_4:-43078569 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTAATTGTGAATATA+AGG | + | chr2_4:43078733-43078752 | Msa0329470:intron | 10.0% |
| !!! | TAATTTTAATTGTGAATATA+AGG | + | chr2_4:43078733-43078752 | Msa0329470:intron | 10.0% |
| !!! | AGTAGTTTTAATATAATCAA+AGG | - | chr2_4:43079130-43079149 | None:intergenic | 15.0% |
| !! | TTTGATTATATTAAAACTAC+TGG | + | chr2_4:43079129-43079148 | Msa0329470:three_prime_UTR | 15.0% |
| !! | TTGATTATATTAAAACTACT+GGG | + | chr2_4:43079130-43079149 | Msa0329470:three_prime_UTR | 15.0% |
| !!! | AGTAGTTTTAATATAATCAA+AGG | - | chr2_4:43079130-43079149 | None:intergenic | 15.0% |
| !! | TTTGATTATATTAAAACTAC+TGG | + | chr2_4:43079129-43079148 | Msa0329470:three_prime_UTR | 15.0% |
| !! | TTGATTATATTAAAACTACT+GGG | + | chr2_4:43079130-43079149 | Msa0329470:three_prime_UTR | 15.0% |
| !!! | AGTTTTAATATAATCAAAGG+TGG | - | chr2_4:43079127-43079146 | None:intergenic | 20.0% |
| !! | TCCATCTTAATATCAATAAA+TGG | + | chr2_4:43079215-43079234 | Msa0329470:three_prime_UTR | 20.0% |
| !! | ACCATTTATTGATATTAAGA+TGG | - | chr2_4:43079219-43079238 | None:intergenic | 20.0% |
| !!! | AGTTTTAATATAATCAAAGG+TGG | - | chr2_4:43079127-43079146 | None:intergenic | 20.0% |
| !! | TCCATCTTAATATCAATAAA+TGG | + | chr2_4:43079215-43079234 | Msa0329470:three_prime_UTR | 20.0% |
| !! | ACCATTTATTGATATTAAGA+TGG | - | chr2_4:43079219-43079238 | None:intergenic | 20.0% |
| ! | AAATCATGAGAGAAATTGAA+GGG | - | chr2_4:43078673-43078692 | None:intergenic | 25.0% |
| ! | AAAATCATGAGAGAAATTGA+AGG | - | chr2_4:43078674-43078693 | None:intergenic | 25.0% |
| ! | TCCATGAAATATTTGAAAAG+TGG | + | chr2_4:43078771-43078790 | Msa0329470:CDS | 25.0% |
| !!! | ACCACTTTTCAAATATTTCA+TGG | - | chr2_4:43078775-43078794 | None:intergenic | 25.0% |
| ! | ACAAAAAACACCACAATTAT+TGG | - | chr2_4:43079057-43079076 | None:intergenic | 25.0% |
| ! | AAATCATGAGAGAAATTGAA+GGG | - | chr2_4:43078673-43078692 | None:intergenic | 25.0% |
| ! | AAAATCATGAGAGAAATTGA+AGG | - | chr2_4:43078674-43078693 | None:intergenic | 25.0% |
| ! | TCCATGAAATATTTGAAAAG+TGG | + | chr2_4:43078771-43078790 | Msa0329470:CDS | 25.0% |
| !!! | ACCACTTTTCAAATATTTCA+TGG | - | chr2_4:43078775-43078794 | None:intergenic | 25.0% |
| ! | ACAAAAAACACCACAATTAT+TGG | - | chr2_4:43079057-43079076 | None:intergenic | 25.0% |
| GTAGCTTCAAAATTTGTCAT+AGG | + | chr2_4:43078500-43078519 | Msa0329470:five_prime_UTR | 30.0% | |
| AATATTTGAAAAGTGGTGCA+AGG | + | chr2_4:43078778-43078797 | Msa0329470:CDS | 30.0% | |
| CGACAAAACATATTCTTCAA+AGG | + | chr2_4:43078805-43078824 | Msa0329470:CDS | 30.0% | |
| !! | TGTAACCAGAATTTTTCAGT+TGG | - | chr2_4:43078892-43078911 | None:intergenic | 30.0% |
| ! | AAAAATTCTGGTTACACTCT+AGG | + | chr2_4:43078896-43078915 | Msa0329470:CDS | 30.0% |
| ATCAATGGAACAACCATAAT+TGG | - | chr2_4:43078963-43078982 | None:intergenic | 30.0% | |
| AACTTCATTGATGTTTGACT+GGG | - | chr2_4:43079030-43079049 | None:intergenic | 30.0% | |
| AAACTTCATTGATGTTTGAC+TGG | - | chr2_4:43079031-43079050 | None:intergenic | 30.0% | |
| !! | GAAGTTTTGTCCAATAATTG+TGG | + | chr2_4:43079044-43079063 | Msa0329470:exon | 30.0% |
| CAACTATTAACACTTCATCT+TGG | - | chr2_4:43079179-43079198 | None:intergenic | 30.0% | |
| TAAGATGGAAGTTCAAGATT+TGG | - | chr2_4:43079204-43079223 | None:intergenic | 30.0% | |
| GTAGCTTCAAAATTTGTCAT+AGG | + | chr2_4:43078500-43078519 | Msa0329470:five_prime_UTR | 30.0% | |
| AATATTTGAAAAGTGGTGCA+AGG | + | chr2_4:43078778-43078797 | Msa0329470:CDS | 30.0% | |
| CGACAAAACATATTCTTCAA+AGG | + | chr2_4:43078805-43078824 | Msa0329470:CDS | 30.0% | |
| !! | TGTAACCAGAATTTTTCAGT+TGG | - | chr2_4:43078892-43078911 | None:intergenic | 30.0% |
| ! | AAAAATTCTGGTTACACTCT+AGG | + | chr2_4:43078896-43078915 | Msa0329470:CDS | 30.0% |
| ATCAATGGAACAACCATAAT+TGG | - | chr2_4:43078963-43078982 | None:intergenic | 30.0% | |
| AACTTCATTGATGTTTGACT+GGG | - | chr2_4:43079030-43079049 | None:intergenic | 30.0% | |
| AAACTTCATTGATGTTTGAC+TGG | - | chr2_4:43079031-43079050 | None:intergenic | 30.0% | |
| !! | GAAGTTTTGTCCAATAATTG+TGG | + | chr2_4:43079044-43079063 | Msa0329470:exon | 30.0% |
| CAACTATTAACACTTCATCT+TGG | - | chr2_4:43079179-43079198 | None:intergenic | 30.0% | |
| TAAGATGGAAGTTCAAGATT+TGG | - | chr2_4:43079204-43079223 | None:intergenic | 30.0% | |
| TGAGTAATTCAACTCGTAGA+TGG | - | chr2_4:43078531-43078550 | None:intergenic | 35.0% | |
| ATTGAATAGAGACACAACGT+TGG | - | chr2_4:43078572-43078591 | None:intergenic | 35.0% | |
| AACGTTGTGTCTCTATTCAA+TGG | + | chr2_4:43078571-43078590 | Msa0329470:exon | 35.0% | |
| AGAATAACAAACCGATGGTT+GGG | - | chr2_4:43078648-43078667 | None:intergenic | 35.0% | |
| TAGAATAACAAACCGATGGT+TGG | - | chr2_4:43078649-43078668 | None:intergenic | 35.0% | |
| AATTGTGAATATAAGGCTCC+AGG | + | chr2_4:43078740-43078759 | Msa0329470:intron | 35.0% | |
| CAAAGGAAGAAAAACAGTAC+AGG | + | chr2_4:43078822-43078841 | Msa0329470:CDS | 35.0% | |
| CACAACCAACTGAAAAATTC+TGG | + | chr2_4:43078884-43078903 | Msa0329470:CDS | 35.0% | |
| GAGGAATTTACGTCCAATTA+TGG | + | chr2_4:43078947-43078966 | Msa0329470:CDS | 35.0% | |
| ATGGACATCGTTGAAATCAA+TGG | - | chr2_4:43078978-43078997 | None:intergenic | 35.0% | |
| !! | CCTAACTTTTCAAGATCATC+CGG | - | chr2_4:43079001-43079020 | None:intergenic | 35.0% |
| ATATAATCAAAGGTGGTGAC+AGG | - | chr2_4:43079120-43079139 | None:intergenic | 35.0% | |
| ATTAAAACTACTGGGCTAAG+AGG | + | chr2_4:43079138-43079157 | Msa0329470:three_prime_UTR | 35.0% | |
| TGAGTAATTCAACTCGTAGA+TGG | - | chr2_4:43078531-43078550 | None:intergenic | 35.0% | |
| ATTGAATAGAGACACAACGT+TGG | - | chr2_4:43078572-43078591 | None:intergenic | 35.0% | |
| AACGTTGTGTCTCTATTCAA+TGG | + | chr2_4:43078571-43078590 | Msa0329470:exon | 35.0% | |
| AGAATAACAAACCGATGGTT+GGG | - | chr2_4:43078648-43078667 | None:intergenic | 35.0% | |
| TAGAATAACAAACCGATGGT+TGG | - | chr2_4:43078649-43078668 | None:intergenic | 35.0% | |
| AATTGTGAATATAAGGCTCC+AGG | + | chr2_4:43078740-43078759 | Msa0329470:intron | 35.0% | |
| CAAAGGAAGAAAAACAGTAC+AGG | + | chr2_4:43078822-43078841 | Msa0329470:CDS | 35.0% | |
| CACAACCAACTGAAAAATTC+TGG | + | chr2_4:43078884-43078903 | Msa0329470:CDS | 35.0% | |
| GAGGAATTTACGTCCAATTA+TGG | + | chr2_4:43078947-43078966 | Msa0329470:CDS | 35.0% | |
| ATGGACATCGTTGAAATCAA+TGG | - | chr2_4:43078978-43078997 | None:intergenic | 35.0% | |
| !! | CCTAACTTTTCAAGATCATC+CGG | - | chr2_4:43079001-43079020 | None:intergenic | 35.0% |
| ATATAATCAAAGGTGGTGAC+AGG | - | chr2_4:43079120-43079139 | None:intergenic | 35.0% | |
| ATTAAAACTACTGGGCTAAG+AGG | + | chr2_4:43079138-43079157 | Msa0329470:three_prime_UTR | 35.0% | |
| AGGAATCTGTTCTTGAAGCT+TGG | - | chr2_4:43078624-43078643 | None:intergenic | 40.0% | |
| GAATAACAAACCGATGGTTG+GGG | - | chr2_4:43078647-43078666 | None:intergenic | 40.0% | |
| GGGATAGAATAACAAACCGA+TGG | - | chr2_4:43078653-43078672 | None:intergenic | 40.0% | |
| TGAATATAAGGCTCCAGGTT+CGG | + | chr2_4:43078745-43078764 | Msa0329470:intron | 40.0% | |
| TTGGTTGTGTTGAGTGATTC+TGG | - | chr2_4:43078873-43078892 | None:intergenic | 40.0% | |
| ATTGGACGTAAATTCCTCGA+AGG | - | chr2_4:43078945-43078964 | None:intergenic | 40.0% | |
| TGATTTCAACGATGTCCATC+CGG | + | chr2_4:43078979-43078998 | Msa0329470:CDS | 40.0% | |
| !! | ACTTTTCAAGATCATCCGGA+TGG | - | chr2_4:43078997-43079016 | None:intergenic | 40.0% |
| CCGGATGATCTTGAAAAGTT+AGG | + | chr2_4:43078998-43079017 | Msa0329470:CDS | 40.0% | |
| AGGAATCTGTTCTTGAAGCT+TGG | - | chr2_4:43078624-43078643 | None:intergenic | 40.0% | |
| GAATAACAAACCGATGGTTG+GGG | - | chr2_4:43078647-43078666 | None:intergenic | 40.0% | |
| GGGATAGAATAACAAACCGA+TGG | - | chr2_4:43078653-43078672 | None:intergenic | 40.0% | |
| TGAATATAAGGCTCCAGGTT+CGG | + | chr2_4:43078745-43078764 | Msa0329470:intron | 40.0% | |
| TTGGTTGTGTTGAGTGATTC+TGG | - | chr2_4:43078873-43078892 | None:intergenic | 40.0% | |
| ATTGGACGTAAATTCCTCGA+AGG | - | chr2_4:43078945-43078964 | None:intergenic | 40.0% | |
| TGATTTCAACGATGTCCATC+CGG | + | chr2_4:43078979-43078998 | Msa0329470:CDS | 40.0% | |
| !! | ACTTTTCAAGATCATCCGGA+TGG | - | chr2_4:43078997-43079016 | None:intergenic | 40.0% |
| CCGGATGATCTTGAAAAGTT+AGG | + | chr2_4:43078998-43079017 | Msa0329470:CDS | 40.0% | |
| TTCTTGAAGCTTGGAGTTGG+AGG | - | chr2_4:43078615-43078634 | None:intergenic | 45.0% | |
| CTGTTCTTGAAGCTTGGAGT+TGG | - | chr2_4:43078618-43078637 | None:intergenic | 45.0% | |
| ATTTCATGGATGTCCGAACC+TGG | - | chr2_4:43078761-43078780 | None:intergenic | 45.0% | |
| TGAGATCAGAGAACTGGTTG+AGG | - | chr2_4:43078922-43078941 | None:intergenic | 45.0% | |
| AAAACTACTGGGCTAAGAGG+AGG | + | chr2_4:43079141-43079160 | Msa0329470:three_prime_UTR | 45.0% | |
| TTCTTGAAGCTTGGAGTTGG+AGG | - | chr2_4:43078615-43078634 | None:intergenic | 45.0% | |
| CTGTTCTTGAAGCTTGGAGT+TGG | - | chr2_4:43078618-43078637 | None:intergenic | 45.0% | |
| ATTTCATGGATGTCCGAACC+TGG | - | chr2_4:43078761-43078780 | None:intergenic | 45.0% | |
| TGAGATCAGAGAACTGGTTG+AGG | - | chr2_4:43078922-43078941 | None:intergenic | 45.0% | |
| AAAACTACTGGGCTAAGAGG+AGG | + | chr2_4:43079141-43079160 | Msa0329470:three_prime_UTR | 45.0% | |
| ACAGATTCCTCCCCAACCAT+CGG | + | chr2_4:43078634-43078653 | Msa0329470:CDS | 50.0% | |
| TAACAAACCGATGGTTGGGG+AGG | - | chr2_4:43078644-43078663 | None:intergenic | 50.0% | |
| CGAAGGTGAGATCAGAGAAC+TGG | - | chr2_4:43078928-43078947 | None:intergenic | 50.0% | |
| GTTCTCTGATCTCACCTTCG+AGG | + | chr2_4:43078928-43078947 | Msa0329470:CDS | 50.0% | |
| ACAGATTCCTCCCCAACCAT+CGG | + | chr2_4:43078634-43078653 | Msa0329470:CDS | 50.0% | |
| TAACAAACCGATGGTTGGGG+AGG | - | chr2_4:43078644-43078663 | None:intergenic | 50.0% | |
| CGAAGGTGAGATCAGAGAAC+TGG | - | chr2_4:43078928-43078947 | None:intergenic | 50.0% | |
| GTTCTCTGATCTCACCTTCG+AGG | + | chr2_4:43078928-43078947 | Msa0329470:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 43078477 | 43079300 | 43078477 | ID=Msa0329470;Name=Msa0329470 |
| chr2_4 | mRNA | 43078477 | 43079300 | 43078477 | ID=Msa0329470-mRNA-1;Parent=Msa0329470;Name=Msa0329470-mRNA-1;_AED=0.00;_eAED=0.00;_QI=113|1|1|1|1|1|2|255|118 |
| chr2_4 | exon | 43078477 | 43078655 | 43078477 | ID=Msa0329470-mRNA-1:exon:13178;Parent=Msa0329470-mRNA-1 |
| chr2_4 | exon | 43078755 | 43079300 | 43078755 | ID=Msa0329470-mRNA-1:exon:13179;Parent=Msa0329470-mRNA-1 |
| chr2_4 | five_prime_UTR | 43078477 | 43078589 | 43078477 | ID=Msa0329470-mRNA-1:five_prime_utr;Parent=Msa0329470-mRNA-1 |
| chr2_4 | CDS | 43078590 | 43078655 | 43078590 | ID=Msa0329470-mRNA-1:cds;Parent=Msa0329470-mRNA-1 |
| chr2_4 | CDS | 43078755 | 43079045 | 43078755 | ID=Msa0329470-mRNA-1:cds;Parent=Msa0329470-mRNA-1 |
| chr2_4 | three_prime_UTR | 43079046 | 43079300 | 43079046 | ID=Msa0329470-mRNA-1:three_prime_utr;Parent=Msa0329470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
