AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1001940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1001940 MtrunA17_Chr6g0475931 87.398 246 20 3 1 240 1 241 8.09e-147 409
Msa1001940 MtrunA17_Chr5g0398561 50.000 166 79 2 59 223 59 221 2.79e-50 164
Msa1001940 MtrunA17_Chr3g0135231 29.365 126 87 1 89 214 86 209 9.32e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1001940 AT4G25370.1 50.218 229 103 7 18 240 14 237 1.36e-67 209
Msa1001940 AT4G12060.1 56.213 169 67 4 68 233 76 240 9.04e-53 171

Find 70 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAAGAGAGAGAGGTTT+TGG 0.191792 6_4:+86257533 None:intergenic
AACGTGACTCATTTACTTCT+TGG 0.193512 6_4:-86252680 Msa1001940:CDS
CTCATTTACTTCTTGGAATT+TGG 0.207345 6_4:-86252673 Msa1001940:CDS
AAAACTCACTTTGAAGGATT+TGG 0.216298 6_4:+86257169 None:intergenic
TGCTGTTTCAGCAATTTCTT+TGG 0.256036 6_4:+86252589 None:intergenic
AGAGCTTCGGTTCCTACTTT+AGG 0.268153 6_4:+86255246 None:intergenic
CTCTCTCTAACTTCTCTCTT+TGG 0.296798 6_4:-86257401 Msa1001940:CDS
CGAAAGGTCTTGTCTGCTTT+AGG 0.302687 6_4:-86252629 Msa1001940:CDS
GCAAAATTCTTAAGAGCTAA+TGG 0.310722 6_4:-86253941 Msa1001940:CDS
ACCTCTCTCTCTTTCTTCAA+TGG 0.348304 6_4:-86257528 Msa1001940:exon
GGCATATGCAATGGCGGAGT+TGG 0.395307 6_4:-86255289 Msa1001940:CDS
AGTGTGTTGGTGTTGGTGTT+GGG 0.402794 6_4:+86257464 None:intergenic
AAGAAGAGAGTGTGAAGAAA+AGG 0.405397 6_4:+86257493 None:intergenic
TTAGAGAGAGAGTACATGAT+TGG 0.409045 6_4:+86257414 None:intergenic
CGGAAATTTGTGATGGAAAT+GGG 0.415514 6_4:+86257356 None:intergenic
AACAAGTCTCTTTCAACTAC+TGG 0.415856 6_4:-86257611 Msa1001940:five_prime_UTR
GAGTGTGTTGGTGTTGGTGT+TGG 0.422140 6_4:+86257463 None:intergenic
AGTACATGATTGGTTGTTGT+TGG 0.445207 6_4:+86257424 None:intergenic
ACGGAAATTTGTGATGGAAA+TGG 0.453465 6_4:+86257355 None:intergenic
AGGCTAGTGGTGATATTGAT+TGG 0.457256 6_4:-86252256 Msa1001940:CDS
GTGGTCGGCGAGGGCTATAA+AGG 0.469492 6_4:-86255310 Msa1001940:CDS
TGGTTTAAGGTGGTCGGCGA+GGG 0.471117 6_4:-86255319 Msa1001940:intron
TTTGTTTGGTTTAAGGTGGT+CGG 0.473407 6_4:-86255325 Msa1001940:intron
AGAGAGTGTGAAGAAAAGGT+TGG 0.483166 6_4:+86257497 None:intergenic
GTGTGAAGAAAAGGTTGGAA+TGG 0.488637 6_4:+86257502 None:intergenic
GAACAAACATTAGAGATACT+TGG 0.494086 6_4:-86253896 Msa1001940:CDS
CACTTCATAAAGCCCTCGAT+TGG 0.501232 6_4:-86253823 Msa1001940:CDS
TTCTTGGTTTCACCAGATTG+TGG 0.510521 6_4:+86257196 None:intergenic
AATCCCCATGAGAAGAGCTT+CGG 0.510732 6_4:+86255233 None:intergenic
TTTCCGTGCCACTTCAGAAA+CGG 0.513699 6_4:-86257339 Msa1001940:CDS
CAAACAACTTACGGGTCAGT+AGG 0.514536 6_4:+86257302 None:intergenic
GGAACCGAAGCTCTTCTCAT+GGG 0.514916 6_4:-86255237 Msa1001940:CDS
GGGTCAGTAGGGAGATTAAA+CGG 0.515224 6_4:+86257314 None:intergenic
TGAAGTGGTTCAGTCAAAGA+AGG 0.516251 6_4:+86253839 None:intergenic
AAACTTAAGTATCCTAAAGT+AGG 0.518801 6_4:-86255258 Msa1001940:CDS
CAAAGAAGGTACCACAGGGC+TGG 0.521979 6_4:+86253853 None:intergenic
AATTTGGTCACAAGAAGAAT+CGG 0.524470 6_4:-86252657 Msa1001940:CDS
CTTAATGAGACATCAAAGTC+AGG 0.528570 6_4:-86253797 Msa1001940:intron
AAACGGCACCGTTTCTGAAG+TGG 0.536415 6_4:+86257331 None:intergenic
ACTTCATAAAGCCCTCGATT+GGG 0.536661 6_4:-86253822 Msa1001940:CDS
AACAAACATTAGAGATACTT+GGG 0.539478 6_4:-86253895 Msa1001940:CDS
TGATATAAAATGTAGGTGAA+GGG 0.544707 6_4:-86252709 Msa1001940:intron
TTATGTTTCTTGTAGGCTAG+TGG 0.544994 6_4:-86252269 Msa1001940:intron
GAATTTGTAGTGTGCACACT+TGG 0.545774 6_4:+86257583 None:intergenic
CTCATTAAGTGCCCAATCGA+GGG 0.546784 6_4:+86253811 None:intergenic
TCAGTCAAAGAAGGTACCAC+AGG 0.550965 6_4:+86253848 None:intergenic
GATATAAAATGTAGGTGAAG+GGG 0.556811 6_4:-86252708 Msa1001940:intron
AGAAGAATCGGCAGGTCGAA+AGG 0.557152 6_4:-86252645 Msa1001940:CDS
CAATGGCGGAGTTGGAAACA+AGG 0.558511 6_4:-86255281 Msa1001940:CDS
GCCATTGAAGAAAGAGAGAG+AGG 0.558904 6_4:+86257527 None:intergenic
CAATCGAGGGCTTTATGAAG+TGG 0.559203 6_4:+86253824 None:intergenic
TTTGACATGGAAATCTAAAG+AGG 0.570570 6_4:+86252155 None:intergenic
TTGTGATGGAAATGGGTCGT+TGG 0.574801 6_4:+86257363 None:intergenic
AGGAACCGAAGCTCTTCTCA+TGG 0.574875 6_4:-86255238 Msa1001940:CDS
AGAGAAGAGTGTGTTGGTGT+TGG 0.577106 6_4:+86257457 None:intergenic
TTGGTTTAAGGTGGTCGGCG+AGG 0.581133 6_4:-86255320 Msa1001940:intron
GGCTATAAAGGCATATGCAA+TGG 0.582460 6_4:-86255298 Msa1001940:CDS
AAACAACTTACGGGTCAGTA+GGG 0.586351 6_4:+86257303 None:intergenic
TGGTCACAAGAAGAATCGGC+AGG 0.599189 6_4:-86252653 Msa1001940:CDS
AGATACTTGGGAAATCTGAC+TGG 0.600934 6_4:-86253883 Msa1001940:CDS
TCTCATTAAGTGCCCAATCG+AGG 0.607236 6_4:+86253810 None:intergenic
TGAACGAGAGAAGAGTGTGT+TGG 0.616137 6_4:+86257451 None:intergenic
TTGACATGGAAATCTAAAGA+GGG 0.630237 6_4:+86252156 None:intergenic
GAACCGAAGCTCTTCTCATG+GGG 0.645463 6_4:-86255236 Msa1001940:CDS
AGTGGCACGGAAATTTGTGA+TGG 0.654680 6_4:+86257349 None:intergenic
GCACCGTTTCTGAAGTGGCA+CGG 0.660995 6_4:+86257336 None:intergenic
TATAAAGGCATATGCAATGG+CGG 0.665721 6_4:-86255295 Msa1001940:CDS
CAGTCAAAGAAGGTACCACA+GGG 0.673070 6_4:+86253849 None:intergenic
TAGTACAACAGTATTTGACA+TGG 0.683666 6_4:+86252142 None:intergenic
CTGGTACTACTCCAGCCCTG+TGG 0.699262 6_4:-86253864 Msa1001940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTGC+AGG - chr6_4:86252373-86252392 Msa1001940:intron 10.0%
!! TATTCTAATTTATATGTATT+CGG + chr6_4:86252818-86252837 None:intergenic 10.0%
!! TATTAATAAGAGATATATTT+GGG - chr6_4:86253072-86253091 Msa1001940:intron 10.0%
!! ACAATAAATTAATACAATTA+AGG + chr6_4:86254107-86254126 None:intergenic 10.0%
!!! TTATTTTATAAACACTTAAT+AGG - chr6_4:86254711-86254730 Msa1001940:intron 10.0%
!! ACATTATTAAATCTTAAAAT+TGG - chr6_4:86255359-86255378 Msa1001940:intron 10.0%
!! CATTATTAAATCTTAAAATT+GGG - chr6_4:86255360-86255379 Msa1001940:intron 10.0%
!!! TACTATATTTTAAACTTAAT+AGG + chr6_4:86256157-86256176 None:intergenic 10.0%
!! TATTGTAATGTTTAAAAAAT+CGG + chr6_4:86257260-86257279 None:intergenic 10.0%
!! TAGTTCAATATTTATGTAAT+TGG - chr6_4:86252479-86252498 Msa1001940:intron 15.0%
!! AGTTCAATATTTATGTAATT+GGG - chr6_4:86252480-86252499 Msa1001940:intron 15.0%
!! ATTAGAATAATTCATCTAAT+TGG - chr6_4:86252829-86252848 Msa1001940:intron 15.0%
!! CTAAATGTATTTATTCATAA+AGG + chr6_4:86253018-86253037 None:intergenic 15.0%
!! GTATTAATAAGAGATATATT+TGG - chr6_4:86253071-86253090 Msa1001940:intron 15.0%
!! ATTAATAAGAGATATATTTG+GGG - chr6_4:86253073-86253092 Msa1001940:intron 15.0%
!!! GAAAATTAAATTTTTGTGAA+GGG - chr6_4:86253146-86253165 Msa1001940:intron 15.0%
!!! CAAACAATTTTTTTTTGAAA+TGG + chr6_4:86253216-86253235 None:intergenic 15.0%
!!! CTATTTTTTAAACATAAATG+AGG + chr6_4:86253782-86253801 None:intergenic 15.0%
!! ATAAATTAATACAATTAAGG+CGG + chr6_4:86254104-86254123 None:intergenic 15.0%
!!! TATTTGTTTTCATTGAAAAA+TGG - chr6_4:86254787-86254806 Msa1001940:intron 15.0%
!!! GTTATTTTGACAAAAAAAAA+GGG + chr6_4:86256243-86256262 None:intergenic 15.0%
!!! TGTTATTTTGACAAAAAAAA+AGG + chr6_4:86256244-86256263 None:intergenic 15.0%
!! TAACTTAAGTATTACAAAAA+AGG + chr6_4:86256863-86256882 None:intergenic 15.0%
!! GTTATTATGATATAAAATGT+AGG - chr6_4:86256879-86256898 Msa1001940:intron 15.0%
!!! CAATAATACAATGTTTTATT+TGG - chr6_4:86257049-86257068 Msa1001940:intron 15.0%
!!! TCTTTTTTATACAAGTTTTT+TGG - chr6_4:86257504-86257523 Msa1001940:CDS 15.0%
!! AAAAAAAATAAGTGTTACAA+GGG + chr6_4:86257587-86257606 None:intergenic 15.0%
!! AAAAAAAAATAAGTGTTACA+AGG + chr6_4:86257588-86257607 None:intergenic 15.0%
!! AATATTTATGTAATTGGGTT+CGG - chr6_4:86252485-86252504 Msa1001940:intron 20.0%
!! TATTATAGTATAGATCTATG+AGG + chr6_4:86252733-86252752 None:intergenic 20.0%
!! TAGATCTATACTATAATACA+TGG - chr6_4:86252735-86252754 Msa1001940:intron 20.0%
!!! ATTTTGTGTTTTTATGTTTG+TGG - chr6_4:86252866-86252885 Msa1001940:intron 20.0%
!! TTCTTATAATAAAGGACTAA+GGG + chr6_4:86252911-86252930 None:intergenic 20.0%
!! GTTAGAAGTTCTTATAATAA+AGG + chr6_4:86252919-86252938 None:intergenic 20.0%
!! TTAATAAGAGATATATTTGG+GGG - chr6_4:86253074-86253093 Msa1001940:intron 20.0%
!! TGTATATAGAAATTTGTAGA+GGG - chr6_4:86253111-86253130 Msa1001940:intron 20.0%
!!! GGAAAATTAAATTTTTGTGA+AGG - chr6_4:86253145-86253164 Msa1001940:intron 20.0%
!!! TGTTGATTTTTAATATTCTC+AGG + chr6_4:86253314-86253333 None:intergenic 20.0%
!! TATGGTATTAAGAAAATTGT+TGG + chr6_4:86253404-86253423 None:intergenic 20.0%
!!! AGTACTAAAATTTGAAATGA+CGG - chr6_4:86253592-86253611 Msa1001940:intron 20.0%
!! TCATTACATTTCTATACTTT+AGG - chr6_4:86253892-86253911 Msa1001940:CDS 20.0%
!! CATTACATTTCTATACTTTA+GGG - chr6_4:86253893-86253912 Msa1001940:CDS 20.0%
!! ACTCTTCAATAATTCATTTA+AGG - chr6_4:86254001-86254020 Msa1001940:intron 20.0%
!!! CAATTTGTTTTGTTTTTGTT+TGG - chr6_4:86254256-86254275 Msa1001940:intron 20.0%
!!! TTTTGTTTTTGTTTGGTTTA+AGG - chr6_4:86254263-86254282 Msa1001940:intron 20.0%
!! AGTAGCTTATTATATAACTT+CGG - chr6_4:86254859-86254878 Msa1001940:intron 20.0%
!!! CAAAGCACTAAAATATATTT+TGG + chr6_4:86255102-86255121 None:intergenic 20.0%
!! AGAATCAAATATTCAAACTT+GGG + chr6_4:86255472-86255491 None:intergenic 20.0%
!! TAGAATCAAATATTCAAACT+TGG + chr6_4:86255473-86255492 None:intergenic 20.0%
!! AAGTTTGAATATTTGATTCT+AGG - chr6_4:86255472-86255491 Msa1001940:intron 20.0%
!! AAAAAATTTGGCATAATCTT+AGG + chr6_4:86255508-86255527 None:intergenic 20.0%
!!! GGCATGATTTTTAAAAAATT+TGG + chr6_4:86255520-86255539 None:intergenic 20.0%
!! TAATTAAAACATGAACACAA+TGG + chr6_4:86255944-86255963 None:intergenic 20.0%
!!! AGTAATGATGTTTAAAATCA+TGG - chr6_4:86256084-86256103 Msa1001940:intron 20.0%
!! ACATAACGTATCATATATTT+AGG - chr6_4:86256192-86256211 Msa1001940:intron 20.0%
!! AAATGTACTAAATAGACAAT+AGG - chr6_4:86256649-86256668 Msa1001940:intron 20.0%
!! TTAGAGAATAATTGAACAAT+AGG + chr6_4:86256805-86256824 None:intergenic 20.0%
!!! AATGTTTTATTTGGTTTCAT+TGG - chr6_4:86257058-86257077 Msa1001940:intron 20.0%
!! TGCATTATTTATTTATGATC+TGG + chr6_4:86257100-86257119 None:intergenic 20.0%
!! GTTTCTTCAAATTTTCTTCT+GGG - chr6_4:86252316-86252335 Msa1001940:intron 25.0%
! ACAAAAAAAACTCACTTTGA+AGG + chr6_4:86252435-86252454 None:intergenic 25.0%
! ATATTTATGTAATTGGGTTC+GGG - chr6_4:86252486-86252505 Msa1001940:intron 25.0%
!! ATGTGATGATTTTCTATTAG+TGG + chr6_4:86252626-86252645 None:intergenic 25.0%
!!! ATTCATCTAATTGGTTTTTG+TGG - chr6_4:86252838-86252857 Msa1001940:intron 25.0%
! GTTCTTATAATAAAGGACTA+AGG + chr6_4:86252912-86252931 None:intergenic 25.0%
! GTGTATATAGAAATTTGTAG+AGG - chr6_4:86253110-86253129 Msa1001940:intron 25.0%
!!! TTTTTTTTTGAAATGGTCTG+TGG + chr6_4:86253209-86253228 None:intergenic 25.0%
!! TTGTAGAGCACTTATATATA+GGG + chr6_4:86253240-86253259 None:intergenic 25.0%
!! TTTGTAGAGCACTTATATAT+AGG + chr6_4:86253241-86253260 None:intergenic 25.0%
! TAAATGAGGACTAATAGTTT+AGG + chr6_4:86253768-86253787 None:intergenic 25.0%
!! CTATACTTTAGGGATTAAAT+AGG - chr6_4:86253903-86253922 Msa1001940:CDS 25.0%
! AGGATAGATAATGAAAGTTT+AGG - chr6_4:86253961-86253980 Msa1001940:intron 25.0%
!! AAGTTTAGGAGAAAAGTTTT+AGG - chr6_4:86253975-86253994 Msa1001940:intron 25.0%
!! ATAATACTAGTTTGTACGAA+AGG - chr6_4:86254024-86254043 Msa1001940:intron 25.0%
!!! ATTGCTATTTAGTACTAGTA+CGG + chr6_4:86254190-86254209 None:intergenic 25.0%
! AAACTTAAGTATCCTAAAGT+AGG - chr6_4:86254337-86254356 Msa1001940:intron 25.0%
!! TGTGTAAAGAGATTTTATAC+TGG - chr6_4:86254623-86254642 Msa1001940:intron 25.0%
! TTAAACCATTATGCAATAAG+TGG - chr6_4:86254665-86254684 Msa1001940:intron 25.0%
! ACTTAATAGGTATAAGCATT+TGG - chr6_4:86254724-86254743 Msa1001940:intron 25.0%
! CTTAATAGGTATAAGCATTT+GGG - chr6_4:86254725-86254744 Msa1001940:intron 25.0%
! TAAGCTACTCAAATAACTAA+TGG + chr6_4:86254848-86254867 None:intergenic 25.0%
! TATAACTTCGGAATAGATTA+TGG - chr6_4:86254871-86254890 Msa1001940:intron 25.0%
! ATAACTTCGGAATAGATTAT+GGG - chr6_4:86254872-86254891 Msa1001940:intron 25.0%
! ATCAAAATAACACAACCAAA+AGG + chr6_4:86255020-86255039 None:intergenic 25.0%
! ATTATAATAGATAGTGAGCT+AGG - chr6_4:86255442-86255461 Msa1001940:intron 25.0%
!! TAATTTTTACTGTCCTTTTC+AGG - chr6_4:86255618-86255637 Msa1001940:intron 25.0%
! AACAAACATTAGAGATACTT+GGG - chr6_4:86255700-86255719 Msa1001940:intron 25.0%
!!! CATCAAACATGATTTTTTTC+AGG + chr6_4:86256064-86256083 None:intergenic 25.0%
! AAAAAAAAGGGACAACAATT+TGG + chr6_4:86256231-86256250 None:intergenic 25.0%
!! AAAGTTTAAAGTACTAAAGC+TGG + chr6_4:86256479-86256498 None:intergenic 25.0%
! ATGATATAAAATGTAGGTGA+AGG - chr6_4:86256885-86256904 Msa1001940:intron 25.0%
! TGATATAAAATGTAGGTGAA+GGG - chr6_4:86256886-86256905 Msa1001940:intron 25.0%
! ACCTCAATGACTATAAAATA+TGG - chr6_4:86257302-86257321 Msa1001940:intron 25.0%
!! ACCATATTTTATAGTCATTG+AGG + chr6_4:86257306-86257325 None:intergenic 25.0%
! ATATGGTTTATGTTTCTTGT+AGG - chr6_4:86257319-86257338 Msa1001940:CDS 25.0%
TGAAGAAACCAAACAACTTA+CGG + chr6_4:86252305-86252324 None:intergenic 30.0%
! GGTTTCTTCAAATTTTCTTC+TGG - chr6_4:86252315-86252334 Msa1001940:intron 30.0%
! AAAACTCACTTTGAAGGATT+TGG + chr6_4:86252429-86252448 None:intergenic 30.0%
! TGATTTTCTATTAGTGGTGT+CGG + chr6_4:86252620-86252639 None:intergenic 30.0%
TTCAGTGTAATTATACGTGT+CGG - chr6_4:86252648-86252667 Msa1001940:CDS 30.0%
AGAACTTCTAACGAAAATCA+CGG - chr6_4:86252927-86252946 Msa1001940:intron 30.0%
GGGTATTAAGAAAATGTTGT+TGG - chr6_4:86252948-86252967 Msa1001940:intron 30.0%
! TTGTAGAGGGTCTTATATTT+AGG - chr6_4:86253124-86253143 Msa1001940:intron 30.0%
TTTAATATTCTCAGGCAAGT+CGG + chr6_4:86253306-86253325 None:intergenic 30.0%
TTGAATGCATTTATTCGCAT+AGG - chr6_4:86253334-86253353 Msa1001940:intron 30.0%
TGAATGCATTTATTCGCATA+GGG - chr6_4:86253335-86253354 Msa1001940:intron 30.0%
AGGAACGTCTAACAAAAATA+TGG + chr6_4:86253422-86253441 None:intergenic 30.0%
TAGTTCATAGTGTTGTCAAA+TGG - chr6_4:86253541-86253560 Msa1001940:intron 30.0%
TTATGCGTGAAACTTCAATT+TGG - chr6_4:86253691-86253710 Msa1001940:intron 30.0%
AGATAGATAGATAGAGTTTG+TGG - chr6_4:86253833-86253852 Msa1001940:CDS 30.0%
GGATTAAATAGGATAGATAC+TGG - chr6_4:86253914-86253933 Msa1001940:CDS 30.0%
!! TTGCTATTTAGTACTAGTAC+GGG + chr6_4:86254189-86254208 None:intergenic 30.0%
AGCAATACTCTTCATGTAAT+TGG - chr6_4:86254204-86254223 Msa1001940:intron 30.0%
GCAATACTCTTCATGTAATT+GGG - chr6_4:86254205-86254224 Msa1001940:intron 30.0%
!! TGTTTTTGTTTGGTTTAAGG+TGG - chr6_4:86254266-86254285 Msa1001940:intron 30.0%
! AATGCATTTCTCTTTTCTCA+TGG - chr6_4:86254455-86254474 Msa1001940:intron 30.0%
! TTTCTCTTTTCTCATGGAAT+AGG - chr6_4:86254461-86254480 Msa1001940:intron 30.0%
TTGTTCAAGTATGACATGAT+TGG + chr6_4:86254584-86254603 None:intergenic 30.0%
! TAAAGAGATTTTATACTGGC+AGG - chr6_4:86254627-86254646 Msa1001940:intron 30.0%
! AAAGAGATTTTATACTGGCA+GGG - chr6_4:86254628-86254647 Msa1001940:intron 30.0%
GATAACCACTTATTGCATAA+TGG + chr6_4:86254673-86254692 None:intergenic 30.0%
TATAAGCATTTGGGTACATA+TGG - chr6_4:86254734-86254753 Msa1001940:intron 30.0%
CTTATAATAAATGATGCCAG+TGG + chr6_4:86255052-86255071 None:intergenic 30.0%
TTATAAGTTCGTTTCGAATC+CGG - chr6_4:86255065-86255084 Msa1001940:intron 30.0%
TTGTATGTAAGAACCAAGAA+TGG - chr6_4:86255125-86255144 Msa1001940:intron 30.0%
AATCTTTCTACATCCATTCT+TGG + chr6_4:86255141-86255160 None:intergenic 30.0%
! CAGTTTCTAGAAAAAATCAC+AGG + chr6_4:86255167-86255186 None:intergenic 30.0%
! GTTCATTTGCTCTGAATTAT+TGG - chr6_4:86255228-86255247 Msa1001940:CDS 30.0%
! TTTTGTTCATTCCTTCCATA+TGG - chr6_4:86255261-86255280 Msa1001940:CDS 30.0%
TTTGTTCATTCCTTCCATAT+GGG - chr6_4:86255262-86255281 Msa1001940:CDS 30.0%
!! AGTTTTGACAAAACTGTATC+TGG - chr6_4:86255299-86255318 Msa1001940:CDS 30.0%
!! GTTTTGACAAAACTGTATCT+GGG - chr6_4:86255300-86255319 Msa1001940:CDS 30.0%
AATGTTGAACAACGTATACA+AGG + chr6_4:86255594-86255613 None:intergenic 30.0%
GCAAAATTCTTAAGAGCTAA+TGG - chr6_4:86255654-86255673 Msa1001940:intron 30.0%
GAACAAACATTAGAGATACT+TGG - chr6_4:86255699-86255718 Msa1001940:intron 30.0%
ATGAATCTAGCAGATCAATT+GGG + chr6_4:86255882-86255901 None:intergenic 30.0%
AATGAATCTAGCAGATCAAT+TGG + chr6_4:86255883-86255902 None:intergenic 30.0%
CACAAATTTCAACAACAGTT+TGG - chr6_4:86255985-86256004 Msa1001940:intron 30.0%
TGTGTTCAATGGATAACTAA+TGG - chr6_4:86256112-86256131 Msa1001940:intron 30.0%
GATACGTTATGTTAAGTAGA+TGG + chr6_4:86256184-86256203 None:intergenic 30.0%
! TAATCTACTGGCTACTTTAA+AGG - chr6_4:86256274-86256293 Msa1001940:intron 30.0%
TCATTGGAAATGTATATCTC+AGG - chr6_4:86256584-86256603 Msa1001940:intron 30.0%
TGTACTAAATAGACAATAGG+AGG - chr6_4:86256652-86256671 Msa1001940:intron 30.0%
! CAAAACCAATGTGATTTTGA+GGG + chr6_4:86256762-86256781 None:intergenic 30.0%
GATATAAAATGTAGGTGAAG+GGG - chr6_4:86256887-86256906 Msa1001940:intron 30.0%
CTCATTTACTTCTTGGAATT+TGG - chr6_4:86256922-86256941 Msa1001940:intron 30.0%
AATTTGGTCACAAGAAGAAT+CGG - chr6_4:86256938-86256957 Msa1001940:intron 30.0%
! GTATAGTCAATTTTCTCTAG+AGG + chr6_4:86257416-86257435 None:intergenic 30.0%
TTGACATGGAAATCTAAAGA+GGG + chr6_4:86257442-86257461 None:intergenic 30.0%
TTTGACATGGAAATCTAAAG+AGG + chr6_4:86257443-86257462 None:intergenic 30.0%
TAGTACAACAGTATTTGACA+TGG + chr6_4:86257456-86257475 None:intergenic 30.0%
! AAGAAAGAGAGAGAGGTTTT+GGG + chr6_4:86252064-86252083 None:intergenic 35.0%
! AAGAAGAGAGTGTGAAGAAA+AGG + chr6_4:86252105-86252124 None:intergenic 35.0%
! AGTACATGATTGGTTGTTGT+TGG + chr6_4:86252174-86252193 None:intergenic 35.0%
! TTAGAGAGAGAGTACATGAT+TGG + chr6_4:86252184-86252203 None:intergenic 35.0%
! CGGAAATTTGTGATGGAAAT+GGG + chr6_4:86252242-86252261 None:intergenic 35.0%
! ACGGAAATTTGTGATGGAAA+TGG + chr6_4:86252243-86252262 None:intergenic 35.0%
GAAGAAACCAAACAACTTAC+GGG + chr6_4:86252304-86252323 None:intergenic 35.0%
! CTTCAAATTTTCTTCTGGGT+CGG - chr6_4:86252320-86252339 Msa1001940:intron 35.0%
!! TGAAGGATTTGGAGTTTTCT+TGG + chr6_4:86252418-86252437 None:intergenic 35.0%
TAGTCTATACCTATGAAGCA+CGG - chr6_4:86252577-86252596 Msa1001940:intron 35.0%
TAGTATAGATCTATGAGGCA+TGG + chr6_4:86252728-86252747 None:intergenic 35.0%
ACTAATCCGGTTAACTTAGT+GGG + chr6_4:86252784-86252803 None:intergenic 35.0%
AACTAATCCGGTTAACTTAG+TGG + chr6_4:86252785-86252804 None:intergenic 35.0%
!! ACTAAGTTAACCGGATTAGT+TGG - chr6_4:86252784-86252803 Msa1001940:intron 35.0%
GAACTTCTAACGAAAATCAC+GGG - chr6_4:86252928-86252947 Msa1001940:intron 35.0%
TGTGAAGGGTCTACAAATTT+AGG - chr6_4:86253160-86253179 Msa1001940:intron 35.0%
GTGAAGGGTCTACAAATTTA+GGG - chr6_4:86253161-86253180 Msa1001940:intron 35.0%
TCTACAAATTTAGGGATGGA+GGG - chr6_4:86253169-86253188 Msa1001940:intron 35.0%
CAAGTCGGTAATACTAATCA+GGG + chr6_4:86253291-86253310 None:intergenic 35.0%
! TCTGAAATGTGAGTGTCTAT+TGG + chr6_4:86253368-86253387 None:intergenic 35.0%
TGTTAGACGTTCCTGTAATA+AGG - chr6_4:86253428-86253447 Msa1001940:intron 35.0%
GTTAGACGTTCCTGTAATAA+GGG - chr6_4:86253429-86253448 Msa1001940:intron 35.0%
TTCCTGTAATAAGGGATGAA+GGG - chr6_4:86253437-86253456 Msa1001940:intron 35.0%
TTCATAGTGTTGTCAAATGG+TGG - chr6_4:86253544-86253563 Msa1001940:intron 35.0%
!! TTGAAATGACGGCTATTTTC+TGG - chr6_4:86253603-86253622 Msa1001940:intron 35.0%
TGGTCCATACTATTTGTACT+TGG - chr6_4:86253711-86253730 Msa1001940:intron 35.0%
GAGACCAAGTACAAATAGTA+TGG + chr6_4:86253718-86253737 None:intergenic 35.0%
AATACAATTAAGGCGGTTAG+CGG + chr6_4:86254097-86254116 None:intergenic 35.0%
! TTTGTTTGGTTTAAGGTGGT+CGG - chr6_4:86254270-86254289 Msa1001940:intron 35.0%
! TATAAAGGCATATGCAATGG+CGG - chr6_4:86254300-86254319 Msa1001940:intron 35.0%
!!! CTCATGGGGATTTTAATTGA+AGG - chr6_4:86254373-86254392 Msa1001940:intron 35.0%
! AACTTTTCCAAGATAGTGCT+TGG - chr6_4:86254498-86254517 Msa1001940:intron 35.0%
! AAGGTGCTTAATCGCATTTA+GGG + chr6_4:86255001-86255020 None:intergenic 35.0%
!! AAAGGTGCTTAATCGCATTT+AGG + chr6_4:86255002-86255021 None:intergenic 35.0%
! AAATGCGATTAAGCACCTTT+TGG - chr6_4:86255002-86255021 Msa1001940:intron 35.0%
TAATAAATGATGCCAGTGGA+TGG + chr6_4:86255048-86255067 None:intergenic 35.0%
ATTGCCAAGTAAATCCTGTA+GGG + chr6_4:86255199-86255218 None:intergenic 35.0%
TATTGCCAAGTAAATCCTGT+AGG + chr6_4:86255200-86255219 None:intergenic 35.0%
CAGGATTTACTTGGCAATAT+TGG - chr6_4:86255201-86255220 Msa1001940:intron 35.0%
! CATTTGCTCTGAATTATTGG+TGG - chr6_4:86255231-86255250 Msa1001940:CDS 35.0%
GTCAAAACTCAAGAATGTCT+TGG + chr6_4:86255288-86255307 None:intergenic 35.0%
! TGTCTCTAAGAAATGAGTTG+TGG - chr6_4:86255411-86255430 Msa1001940:intron 35.0%
! GTCTCTAAGAAATGAGTTGT+GGG - chr6_4:86255412-86255431 Msa1001940:intron 35.0%
CCAAGATCCTTCCATTTATT+CGG - chr6_4:86255538-86255557 Msa1001940:intron 35.0%
ACAACTTCCTTCCGAATAAA+TGG + chr6_4:86255552-86255571 None:intergenic 35.0%
!!! AAGGAAGTTGTGTTGTTTTC+AGG - chr6_4:86255561-86255580 Msa1001940:intron 35.0%
!!! AAGTTGTGTTGTTTTCAGGT+TGG - chr6_4:86255565-86255584 Msa1001940:intron 35.0%
!!! AGTTGTGTTGTTTTCAGGTT+GGG - chr6_4:86255566-86255585 Msa1001940:intron 35.0%
AGCTTTACTTGTTCCTGAAA+AGG + chr6_4:86255634-86255653 None:intergenic 35.0%
CTTAATGAGACATCAAAGTC+AGG - chr6_4:86255798-86255817 Msa1001940:intron 35.0%
AAGTCAGGTATGGATGATTT+AGG - chr6_4:86255813-86255832 Msa1001940:intron 35.0%
TGCTAGATTCATTGTTCTGT+TGG - chr6_4:86255890-86255909 Msa1001940:intron 35.0%
TAGATTCATTGTTCTGTTGG+TGG - chr6_4:86255893-86255912 Msa1001940:intron 35.0%
TCATGGTTAAGTGTGTTCAA+TGG - chr6_4:86256101-86256120 Msa1001940:intron 35.0%
CACAACGCTAATTAATCTAC+TGG - chr6_4:86256262-86256281 Msa1001940:intron 35.0%
! CAAGCATTTTCTAACAGATC+AGG + chr6_4:86256359-86256378 None:intergenic 35.0%
CTCAATAAGGACTGAAAATC+AGG - chr6_4:86256427-86256446 Msa1001940:intron 35.0%
ACTCAAGTAGACTATCAACA+TGG + chr6_4:86256512-86256531 None:intergenic 35.0%
TGTGTGTGTGTATGTTTCAT+TGG - chr6_4:86256568-86256587 Msa1001940:intron 35.0%
TGTATATCTCAGGAGATAGT+AGG - chr6_4:86256594-86256613 Msa1001940:intron 35.0%
! CCAAAACCAATGTGATTTTG+AGG + chr6_4:86256763-86256782 None:intergenic 35.0%
!!! CCTCAAAATCACATTGGTTT+TGG - chr6_4:86256760-86256779 Msa1001940:intron 35.0%
AACGTGACTCATTTACTTCT+TGG - chr6_4:86256915-86256934 Msa1001940:intron 35.0%
!! TGCTGTTTCAGCAATTTCTT+TGG + chr6_4:86257009-86257028 None:intergenic 35.0%
GATAACCGGAATCAAACTAA+CGG - chr6_4:86257187-86257206 Msa1001940:CDS 35.0%
TTATGTTTCTTGTAGGCTAG+TGG - chr6_4:86257326-86257345 Msa1001940:CDS 35.0%
! AAGCAAGCGTAAGAATTTTC+TGG - chr6_4:86257371-86257390 Msa1001940:CDS 35.0%
! AGCAAGCGTAAGAATTTTCT+GGG - chr6_4:86257372-86257391 Msa1001940:CDS 35.0%
TGTTACAAGGGAAAAACAGA+AGG + chr6_4:86257575-86257594 None:intergenic 35.0%
GAATTTGTAGTGTGCACACT+TGG + chr6_4:86252015-86252034 None:intergenic 40.0%
! AGAAAGAGAGAGAGGTTTTG+GGG + chr6_4:86252063-86252082 None:intergenic 40.0%
! GAAGAAAGAGAGAGAGGTTT+TGG + chr6_4:86252065-86252084 None:intergenic 40.0%
ACCTCTCTCTCTTTCTTCAA+TGG - chr6_4:86252067-86252086 Msa1001940:three_prime_UTR 40.0%
GTGTGAAGAAAAGGTTGGAA+TGG + chr6_4:86252096-86252115 None:intergenic 40.0%
! AGAGAGTGTGAAGAAAAGGT+TGG + chr6_4:86252101-86252120 None:intergenic 40.0%
CTCTCTCTAACTTCTCTCTT+TGG - chr6_4:86252194-86252213 Msa1001940:three_prime_UTR 40.0%
AAACAACTTACGGGTCAGTA+GGG + chr6_4:86252295-86252314 None:intergenic 40.0%
! TTTTGCAGGAATCCACAATC+TGG - chr6_4:86252387-86252406 Msa1001940:intron 40.0%
TTCTTGGTTTCACCAGATTG+TGG + chr6_4:86252402-86252421 None:intergenic 40.0%
CTAATCCGGTTAACTTAGTG+GGG + chr6_4:86252783-86252802 None:intergenic 40.0%
AGGGTCTACAAATTTAGGGA+TGG - chr6_4:86253165-86253184 Msa1001940:intron 40.0%
GTCTACAAATTTAGGGATGG+AGG - chr6_4:86253168-86253187 Msa1001940:intron 40.0%
CTACAAATTTAGGGATGGAG+GGG - chr6_4:86253170-86253189 Msa1001940:intron 40.0%
TACAAATTTAGGGATGGAGG+GGG - chr6_4:86253171-86253190 Msa1001940:intron 40.0%
TTGAAATGGTCTGTGGACAA+CGG + chr6_4:86253202-86253221 None:intergenic 40.0%
GCAAGTCGGTAATACTAATC+AGG + chr6_4:86253292-86253311 None:intergenic 40.0%
GTTCCTGTAATAAGGGATGA+AGG - chr6_4:86253436-86253455 Msa1001940:intron 40.0%
ACTGTTATAGCCGAGCTATA+CGG - chr6_4:86253464-86253483 Msa1001940:intron 40.0%
!! TTGTCAAATGGTGGCTTTAG+CGG - chr6_4:86253553-86253572 Msa1001940:intron 40.0%
! AGTGTTATTCTTCGCTTTCG+TGG + chr6_4:86254056-86254075 None:intergenic 40.0%
! GGCTATAAAGGCATATGCAA+TGG - chr6_4:86254297-86254316 Msa1001940:intron 40.0%
!! CAAAAGCGCTCGTGTAATAT+TGG + chr6_4:86254935-86254954 None:intergenic 40.0%
AGGTGCTTAATCGCATTTAG+GGG + chr6_4:86255000-86255019 None:intergenic 40.0%
! TTTTGATATGCACCATCCAC+TGG - chr6_4:86255033-86255052 Msa1001940:intron 40.0%
!!! TATTTTGGCTTGCATACGTC+CGG + chr6_4:86255087-86255106 None:intergenic 40.0%
! AACTGTTTAGTTTCCCCTAC+AGG - chr6_4:86255182-86255201 Msa1001940:intron 40.0%
TTTCCCCTACAGGATTTACT+TGG - chr6_4:86255192-86255211 Msa1001940:intron 40.0%
TTGCCAAGTAAATCCTGTAG+GGG + chr6_4:86255198-86255217 None:intergenic 40.0%
TTAAAATTGGGTGCGTAGAC+CGG - chr6_4:86255372-86255391 Msa1001940:intron 40.0%
CCGAATAAATGGAAGGATCT+TGG + chr6_4:86255541-86255560 None:intergenic 40.0%
GATCCTTCCATTTATTCGGA+AGG - chr6_4:86255542-86255561 Msa1001940:intron 40.0%
CTTCCTTCCGAATAAATGGA+AGG + chr6_4:86255548-86255567 None:intergenic 40.0%
AGATACTTGGGAAATCTGAC+TGG - chr6_4:86255712-86255731 Msa1001940:intron 40.0%
TGAAGTGGTTCAGTCAAAGA+AGG + chr6_4:86255759-86255778 None:intergenic 40.0%
ACTTCATAAAGCCCTCGATT+GGG - chr6_4:86255773-86255792 Msa1001940:intron 40.0%
TGAGACATCAAAGTCAGGTA+TGG - chr6_4:86255803-86255822 Msa1001940:intron 40.0%
AGATCAATTGGGAAAATGCC+AGG + chr6_4:86255871-86255890 None:intergenic 40.0%
!! TTCATTGTTCTGTTGGTGGT+AGG - chr6_4:86255897-86255916 Msa1001940:intron 40.0%
!! TCATTGTTCTGTTGGTGGTA+GGG - chr6_4:86255898-86255917 Msa1001940:intron 40.0%
AACAACAGTTTGGATGATGC+AGG - chr6_4:86255995-86256014 Msa1001940:intron 40.0%
! ACTAATGGCTTGCGAAACTT+TGG - chr6_4:86256127-86256146 Msa1001940:intron 40.0%
! TTTTTCCCTGCTGCTCAATA+AGG - chr6_4:86256414-86256433 Msa1001940:intron 40.0%
TCTAGTGAGCTAGTTGAATG+TGG - chr6_4:86256688-86256707 Msa1001940:intron 40.0%
CTAGTGAGCTAGTTGAATGT+GGG - chr6_4:86256689-86256708 Msa1001940:intron 40.0%
TTCCTCCCTCAAAATCACAT+TGG - chr6_4:86256754-86256773 Msa1001940:intron 40.0%
!! AACCAATGTGATTTTGAGGG+AGG + chr6_4:86256759-86256778 None:intergenic 40.0%
TCATGAAGTCCGGTTGAATT+TGG + chr6_4:86257169-86257188 None:intergenic 40.0%
ATTCCGGTTATCATGAAGTC+CGG + chr6_4:86257179-86257198 None:intergenic 40.0%
! ATAGTCATTGAGGTGTCAGT+CGG + chr6_4:86257296-86257315 None:intergenic 40.0%
AGGCTAGTGGTGATATTGAT+TGG - chr6_4:86257339-86257358 Msa1001940:CDS 40.0%
! GCAAGCGTAAGAATTTTCTG+GGG - chr6_4:86257373-86257392 Msa1001940:CDS 40.0%
! TTTTCGCAGTAGTGTGATTG+TGG - chr6_4:86257531-86257550 Msa1001940:exon 40.0%
!!! AAAGAGAGAGAGGTTTTGGG+GGG + chr6_4:86252061-86252080 None:intergenic 45.0%
!! GAAAGAGAGAGAGGTTTTGG+GGG + chr6_4:86252062-86252081 None:intergenic 45.0%
GCCATTGAAGAAAGAGAGAG+AGG + chr6_4:86252071-86252090 None:intergenic 45.0%
!! AGTGTGTTGGTGTTGGTGTT+GGG + chr6_4:86252134-86252153 None:intergenic 45.0%
! AGAGAAGAGTGTGTTGGTGT+TGG + chr6_4:86252141-86252160 None:intergenic 45.0%
! TGAACGAGAGAAGAGTGTGT+TGG + chr6_4:86252147-86252166 None:intergenic 45.0%
! TTGTGATGGAAATGGGTCGT+TGG + chr6_4:86252235-86252254 None:intergenic 45.0%
AGTGGCACGGAAATTTGTGA+TGG + chr6_4:86252249-86252268 None:intergenic 45.0%
!! TTTCCGTGCCACTTCAGAAA+CGG - chr6_4:86252256-86252275 Msa1001940:CDS 45.0%
GGGTCAGTAGGGAGATTAAA+CGG + chr6_4:86252284-86252303 None:intergenic 45.0%
CAAACAACTTACGGGTCAGT+AGG + chr6_4:86252296-86252315 None:intergenic 45.0%
CTACTGACCCGTAAGTTGTT+TGG - chr6_4:86252294-86252313 Msa1001940:intron 45.0%
ATACCTATGAAGCACGGACA+CGG - chr6_4:86252583-86252602 Msa1001940:intron 45.0%
!! TATACGTGTCGGTGTCATCT+TGG - chr6_4:86252659-86252678 Msa1001940:CDS 45.0%
GCATGGACACTCTTTGGATT+AGG + chr6_4:86252711-86252730 None:intergenic 45.0%
TATGAGGCATGGACACTCTT+TGG + chr6_4:86252717-86252736 None:intergenic 45.0%
TAGTGGGGCTCAATTGAAGT+CGG + chr6_4:86252768-86252787 None:intergenic 45.0%
TTGAGCCCCACTAAGTTAAC+CGG - chr6_4:86252775-86252794 Msa1001940:intron 45.0%
GGCTCAAGTACCAACTAATC+CGG + chr6_4:86252797-86252816 None:intergenic 45.0%
TGAAATGGTCTGTGGACAAC+GGG + chr6_4:86253201-86253220 None:intergenic 45.0%
CTCCCTTCATCCCTTATTAC+AGG + chr6_4:86253442-86253461 None:intergenic 45.0%
AAACCTGTAGCCGTATAGCT+CGG + chr6_4:86253477-86253496 None:intergenic 45.0%
AGAGCTTCGGTTCCTACTTT+AGG + chr6_4:86254352-86254371 None:intergenic 45.0%
AATCCCCATGAGAAGAGCTT+CGG + chr6_4:86254365-86254384 None:intergenic 45.0%
TCTTGAGCCAAGCACTATCT+TGG + chr6_4:86254508-86254527 None:intergenic 45.0%
! AATCGCATTTAGGGGGCATA+TGG + chr6_4:86254992-86255011 None:intergenic 45.0%
GGTGCTTAATCGCATTTAGG+GGG + chr6_4:86254999-86255018 None:intergenic 45.0%
AATGTCTTGGCCCATATGGA+AGG + chr6_4:86255275-86255294 None:intergenic 45.0%
CAAGAATGTCTTGGCCCATA+TGG + chr6_4:86255279-86255298 None:intergenic 45.0%
!! ACAGCAGTGTTGACACTTTC+CGG + chr6_4:86255394-86255413 None:intergenic 45.0%
!! CAGTCAAAGAAGGTACCACA+GGG + chr6_4:86255749-86255768 None:intergenic 45.0%
!! TCAGTCAAAGAAGGTACCAC+AGG + chr6_4:86255750-86255769 None:intergenic 45.0%
! CAATCGAGGGCTTTATGAAG+TGG + chr6_4:86255774-86255793 None:intergenic 45.0%
CACTTCATAAAGCCCTCGAT+TGG - chr6_4:86255772-86255791 Msa1001940:intron 45.0%
CTCATTAAGTGCCCAATCGA+GGG + chr6_4:86255787-86255806 None:intergenic 45.0%
TCTCATTAAGTGCCCAATCG+AGG + chr6_4:86255788-86255807 None:intergenic 45.0%
TGTATTGAGAAGTAGCCTCC+TGG - chr6_4:86255850-86255869 Msa1001940:intron 45.0%
TCAATTGGGAAAATGCCAGG+AGG + chr6_4:86255868-86255887 None:intergenic 45.0%
TCAGTCCTTATTGAGCAGCA+GGG + chr6_4:86256422-86256441 None:intergenic 45.0%
TTCAGTCCTTATTGAGCAGC+AGG + chr6_4:86256423-86256442 None:intergenic 45.0%
CACAGACAGTAGACAAACTG+AGG + chr6_4:86256546-86256565 None:intergenic 45.0%
GTTGAATGTGGGAGACTTTC+AGG - chr6_4:86256700-86256719 Msa1001940:intron 45.0%
CAGGACACTCAAGATCACAT+TGG - chr6_4:86256719-86256738 Msa1001940:intron 45.0%
GAAAATGTTCGAACCTACCG+TGG - chr6_4:86257126-86257145 Msa1001940:intron 45.0%
!! CGGTTGAATTTGGCTTGAAC+CGG + chr6_4:86257159-86257178 None:intergenic 45.0%
CGGTTCAAGCCAAATTCAAC+CGG - chr6_4:86257157-86257176 Msa1001940:intron 45.0%
CAACCGGACTTCATGATAAC+CGG - chr6_4:86257173-86257192 Msa1001940:intron 45.0%
! GTTCGCCGTTAGTTTGATTC+CGG + chr6_4:86257195-86257214 None:intergenic 45.0%
TGTCCTATTCCCGGTTCTAT+CGG - chr6_4:86257215-86257234 Msa1001940:intron 45.0%
CTAGTTCAACCGATAGAACC+GGG + chr6_4:86257227-86257246 None:intergenic 45.0%
GCTAGTTCAACCGATAGAAC+CGG + chr6_4:86257228-86257247 None:intergenic 45.0%
! GTTCTATCGGTTGAACTAGC+TGG - chr6_4:86257228-86257247 Msa1001940:intron 45.0%
!! CAAAAAAAAAAAAAAAAAAA+AGG - chr6_4:86253941-86253960 Msa1001940:CDS 5.0%
!! GAGTGTGTTGGTGTTGGTGT+TGG + chr6_4:86252135-86252154 None:intergenic 50.0%
! AAACGGCACCGTTTCTGAAG+TGG + chr6_4:86252267-86252286 None:intergenic 50.0%
! CTTGAGAGGAGCACACTCAT+AGG + chr6_4:86252513-86252532 None:intergenic 50.0%
CTATGAGTGTGCTCCTCTCA+AGG - chr6_4:86252511-86252530 Msa1001940:intron 50.0%
ATCGAACCTGAGACCTTGAG+AGG + chr6_4:86252527-86252546 None:intergenic 50.0%
GATTAGGCGTGTTACGCTGT+CGG + chr6_4:86252695-86252714 None:intergenic 50.0%
AGGCGGTTAGCGGAAATCAT+GGG + chr6_4:86254087-86254106 None:intergenic 50.0%
AAGGCGGTTAGCGGAAATCA+TGG + chr6_4:86254088-86254107 None:intergenic 50.0%
GCACTGTATCGTGTCTTTCG+TGG - chr6_4:86254155-86254174 Msa1001940:intron 50.0%
! CAATGGCGGAGTTGGAAACA+AGG - chr6_4:86254314-86254333 Msa1001940:intron 50.0%
AGGAACCGAAGCTCTTCTCA+TGG - chr6_4:86254357-86254376 Msa1001940:intron 50.0%
GGAACCGAAGCTCTTCTCAT+GGG - chr6_4:86254358-86254377 Msa1001940:intron 50.0%
GAACCGAAGCTCTTCTCATG+GGG - chr6_4:86254359-86254378 Msa1001940:intron 50.0%
TGGTCACAAGAAGAATCGGC+AGG - chr6_4:86256942-86256961 Msa1001940:intron 50.0%
AGAAGAATCGGCAGGTCGAA+AGG - chr6_4:86256950-86256969 Msa1001940:intron 50.0%
AACCTACCGTGGTTCAACTC+CGG - chr6_4:86257137-86257156 Msa1001940:intron 50.0%
CTTGAACCGGAGTTGAACCA+CGG + chr6_4:86257146-86257165 None:intergenic 50.0%
CAACCGATAGAACCGGGAAT+AGG + chr6_4:86257221-86257240 None:intergenic 50.0%
!!! GTTTTGGGGGGTGCGCTTTT+GGG + chr6_4:86252049-86252068 None:intergenic 55.0%
!! GCACCGTTTCTGAAGTGGCA+CGG + chr6_4:86252262-86252281 None:intergenic 55.0%
TGTGCTCCTCTCAAGGTCTC+AGG - chr6_4:86252518-86252537 Msa1001940:intron 55.0%
TGTCCGTGTCCGTGCTTCAT+AGG + chr6_4:86252589-86252608 None:intergenic 55.0%
TAGCCGAGCTATACGGCTAC+AGG - chr6_4:86253471-86253490 Msa1001940:intron 55.0%
! TTGGTTTAAGGTGGTCGGCG+AGG - chr6_4:86254275-86254294 Msa1001940:intron 55.0%
! TGGTTTAAGGTGGTCGGCGA+GGG - chr6_4:86254276-86254295 Msa1001940:intron 55.0%
! GGCATATGCAATGGCGGAGT+TGG - chr6_4:86254306-86254325 Msa1001940:intron 55.0%
!! CAAAGAAGGTACCACAGGGC+TGG + chr6_4:86255745-86255764 None:intergenic 55.0%
AACCGGAGTTGAACCACGGT+AGG + chr6_4:86257142-86257161 None:intergenic 55.0%
ACGGCGAACTGTCCTATTCC+CGG - chr6_4:86257206-86257225 Msa1001940:intron 55.0%
!! GGTGCGCTTTTGGGTGGGTT+TGG + chr6_4:86252040-86252059 None:intergenic 60.0%
!!! GGTTTTGGGGGGTGCGCTTT+TGG + chr6_4:86252050-86252069 None:intergenic 60.0%
GTGGTCGGCGAGGGCTATAA+AGG - chr6_4:86254285-86254304 Msa1001940:intron 60.0%
CTGGTACTACTCCAGCCCTG+TGG - chr6_4:86255731-86255750 Msa1001940:intron 60.0%
!! TGGGGGGTGCGCTTTTGGGT+GGG + chr6_4:86252045-86252064 None:intergenic 65.0%
!! TTGGGGGGTGCGCTTTTGGG+TGG + chr6_4:86252046-86252065 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 86251987 86257630 86251987 ID=Msa1001940;Name=Msa1001940
chr6_4 mRNA 86251987 86257630 86251987 ID=Msa1001940-mRNA-1;Parent=Msa1001940;Name=Msa1001940-mRNA-1;_AED=0.01;_eAED=0.01;_QI=99|1|1|1|1|1|6|248|240
chr6_4 exon 86251987 86252276 86251987 ID=Msa1001940-mRNA-1:exon:16979;Parent=Msa1001940-mRNA-1
chr6_4 exon 86252589 86252716 86252589 ID=Msa1001940-mRNA-1:exon:16978;Parent=Msa1001940-mRNA-1
chr6_4 exon 86253798 86253977 86253798 ID=Msa1001940-mRNA-1:exon:16977;Parent=Msa1001940-mRNA-1
chr6_4 exon 86255223 86255332 86255223 ID=Msa1001940-mRNA-1:exon:16976;Parent=Msa1001940-mRNA-1
chr6_4 exon 86257178 86257222 86257178 ID=Msa1001940-mRNA-1:exon:16975;Parent=Msa1001940-mRNA-1
chr6_4 exon 86257314 86257630 86257314 ID=Msa1001940-mRNA-1:exon:16974;Parent=Msa1001940-mRNA-1
chr6_4 five_prime_UTR 86257532 86257630 86257532 ID=Msa1001940-mRNA-1:five_prime_utr;Parent=Msa1001940-mRNA-1
chr6_4 CDS 86257314 86257531 86257314 ID=Msa1001940-mRNA-1:cds;Parent=Msa1001940-mRNA-1
chr6_4 CDS 86257178 86257222 86257178 ID=Msa1001940-mRNA-1:cds;Parent=Msa1001940-mRNA-1
chr6_4 CDS 86255223 86255332 86255223 ID=Msa1001940-mRNA-1:cds;Parent=Msa1001940-mRNA-1
chr6_4 CDS 86253798 86253977 86253798 ID=Msa1001940-mRNA-1:cds;Parent=Msa1001940-mRNA-1
chr6_4 CDS 86252589 86252716 86252589 ID=Msa1001940-mRNA-1:cds;Parent=Msa1001940-mRNA-1
chr6_4 CDS 86252235 86252276 86252235 ID=Msa1001940-mRNA-1:cds;Parent=Msa1001940-mRNA-1
chr6_4 three_prime_UTR 86251987 86252234 86251987 ID=Msa1001940-mRNA-1:three_prime_utr;Parent=Msa1001940-mRNA-1
Gene Sequence

>Msa1001940

ATGGCTTCCATTCCAACCTTTTCTTCACACTCTCTTCTTCTCAAACCCAACACCAACACCAACACACTCTTCTCTCGTTCATTCTCCAACAACAACCAATCATGTACTCTCTCTCTAACTTCTCTCTTTGGAACAAAATTCACTCTCCAACGACCCATTTCCATCACAAATTTCCGTGCCACTTCAGAAACGGTGCCGTTTAATCTCCCTACTGACCCGAATCCACAATCTGGTGAAACCAAGAAAACTCCAAATCCTTCAAAGTGGTCGGCGAGGGCTATAAAGGCATATGCAATGGCGGAGTTGGAAACAAGGAAACTTAAGTATCCTAAAGTAGGAACCGAAGCTCTTCTCATGGGGATTTTAATTGAAGGAACAAGTAAAGCTGCAAAATTCTTAAGAGCTAATGGAATTACTTATCTGAAAGTACGCGAACAAACATTAGAGATACTTGGGAAATCTGACTGGTACTACTCCAGCCCTGTGGTACCTTCTTTGACTGAACCACTTCATAAAGCCCTCGATTGGGCACTTAATGAGACATCAAAGTCAGGTGAAGGGGAAACAAACGTGACTCATTTACTTCTTGGAATTTGGTCACAAGAAGAATCGGCAGGTCGAAAGGTCTTGTCTGCTTTAGGTTTCAACGATGAAAAAGCCAAAGAAATTGCTGAAACAGCAGCTAGTGGTGATATTGATTGGAGTTTCAAGAAGCAAGCGTAA

Protein sequence

>Msa1001940

MASIPTFSSHSLLLKPNTNTNTLFSRSFSNNNQSCTLSLTSLFGTKFTLQRPISITNFRATSETVPFNLPTDPNPQSGETKKTPNPSKWSARAIKAYAMAELETRKLKYPKVGTEALLMGILIEGTSKAAKFLRANGITYLKVREQTLEILGKSDWYYSSPVVPSLTEPLHKALDWALNETSKSGEGETNVTHLLLGIWSQEESAGRKVLSALGFNDEKAKEIAETAASGDIDWSFKKQA*