Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343240 | XP_039687551.1 | 94.595 | 222 | 11 | 1 | 1 | 222 | 1 | 221 | 7.97e-133 | 382 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343240 | sp|P31170|HS25P_ARATH | 43.182 | 176 | 71 | 7 | 56 | 222 | 72 | 227 | 5.27e-37 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343240 | G7J2I8 | 94.595 | 222 | 11 | 1 | 1 | 222 | 1 | 221 | 3.80e-133 | 382 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028050 | Msa0343240 | 0.801914 | 7.192233e-49 | -8.615850e-47 |
| Msa0030400 | Msa0343240 | 0.815577 | 8.608415e-52 | -8.615850e-47 |
| Msa0046090 | Msa0343240 | 0.805272 | 1.446340e-49 | -8.615850e-47 |
| Msa0052550 | Msa0343240 | 0.809974 | 1.451163e-50 | -8.615850e-47 |
| Msa0056160 | Msa0343240 | 0.800462 | 1.425238e-48 | -8.615850e-47 |
| Msa0066990 | Msa0343240 | 0.814649 | 1.383285e-51 | -8.615850e-47 |
| Msa0072710 | Msa0343240 | 0.826828 | 2.189535e-54 | -8.615850e-47 |
| Msa0114960 | Msa0343240 | 0.817342 | 3.465117e-52 | -8.615850e-47 |
| Msa0115950 | Msa0343240 | 0.804661 | 1.940943e-49 | -8.615850e-47 |
| Msa0127060 | Msa0343240 | 0.805995 | 1.019927e-49 | -8.615850e-47 |
| Msa0135400 | Msa0343240 | 0.807589 | 4.694565e-50 | -8.615850e-47 |
| Msa0136580 | Msa0343240 | 0.848248 | 6.916708e-60 | -8.615850e-47 |
| Msa0173760 | Msa0343240 | 0.800394 | 1.471183e-48 | -8.615850e-47 |
| Msa0206600 | Msa0343240 | 0.806603 | 7.591641e-50 | -8.615850e-47 |
| Msa0269430 | Msa0343240 | 0.807552 | 4.781562e-50 | -8.615850e-47 |
| Msa0272420 | Msa0343240 | 0.807198 | 5.682708e-50 | -8.615850e-47 |
| Msa0292150 | Msa0343240 | 0.808515 | 2.981668e-50 | -8.615850e-47 |
| Msa0304020 | Msa0343240 | 0.851286 | 9.796929e-61 | -8.615850e-47 |
| Msa0308300 | Msa0343240 | 0.801761 | 7.731150e-49 | -8.615850e-47 |
| Msa0312570 | Msa0343240 | 0.809051 | 2.290295e-50 | -8.615850e-47 |
| Msa0323790 | Msa0343240 | 0.803615 | 3.204017e-49 | -8.615850e-47 |
| Msa0330770 | Msa0343240 | 0.842664 | 2.251750e-58 | -8.615850e-47 |
| Msa0338900 | Msa0343240 | 0.802977 | 4.342310e-49 | -8.615850e-47 |
| Msa0341710 | Msa0343240 | 0.808965 | 2.389109e-50 | -8.615850e-47 |
| Msa0343240 | Msa0365350 | 0.800456 | 1.429164e-48 | -8.615850e-47 |
| Msa0343240 | Msa0367310 | 0.845018 | 5.274453e-59 | -8.615850e-47 |
| Msa0343240 | Msa0372550 | 0.818038 | 2.414499e-52 | -8.615850e-47 |
| Msa0343240 | Msa0379900 | 0.809722 | 1.644317e-50 | -8.615850e-47 |
| Msa0343240 | Msa0394330 | 0.813855 | 2.071617e-51 | -8.615850e-47 |
| Msa0343240 | Msa0404880 | 0.845157 | 4.836998e-59 | -8.615850e-47 |
| Msa0343240 | Msa0423590 | 0.819865 | 9.276413e-53 | -8.615850e-47 |
| Msa0343240 | Msa0443250 | 0.827517 | 1.497644e-54 | -8.615850e-47 |
| Msa0343240 | Msa0444310 | 0.824445 | 8.040981e-54 | -8.615850e-47 |
| Msa0343240 | Msa0470650 | 0.815360 | 9.621715e-52 | -8.615850e-47 |
| Msa0343240 | Msa0489620 | 0.805043 | 1.614595e-49 | -8.615850e-47 |
| Msa0343240 | Msa0515680 | 0.804312 | 2.294294e-49 | -8.615850e-47 |
| Msa0343240 | Msa0516480 | 0.800427 | 1.448464e-48 | -8.615850e-47 |
| Msa0343240 | Msa0528170 | 0.809351 | 1.975505e-50 | -8.615850e-47 |
| Msa0343240 | Msa0531820 | 0.808347 | 3.238340e-50 | -8.615850e-47 |
| Msa0343240 | Msa0533140 | 0.814615 | 1.407792e-51 | -8.615850e-47 |
| Msa0343240 | Msa0560010 | 0.826073 | 3.313142e-54 | -8.615850e-47 |
| Msa0343240 | Msa0588600 | 0.807196 | 5.689480e-50 | -8.615850e-47 |
| Msa0343240 | Msa0597300 | 0.811406 | 7.112400e-51 | -8.615850e-47 |
| Msa0343240 | Msa0614060 | 0.803312 | 3.702206e-49 | -8.615850e-47 |
| Msa0343240 | Msa0638040 | 0.801279 | 9.705674e-49 | -8.615850e-47 |
| Msa0343240 | Msa0659130 | 0.816660 | 4.931037e-52 | -8.615850e-47 |
| Msa0343240 | Msa0665040 | 0.834450 | 2.977098e-56 | -8.615850e-47 |
| Msa0343240 | Msa0688760 | 0.804800 | 1.815055e-49 | -8.615850e-47 |
| Msa0343240 | Msa0697230 | 0.813651 | 2.298266e-51 | -8.615850e-47 |
| Msa0343240 | Msa0703620 | 0.803696 | 3.082391e-49 | -8.615850e-47 |
| Msa0343240 | Msa0707270 | 0.801904 | 7.224121e-49 | -8.615850e-47 |
| Msa0343240 | Msa0726000 | 0.826643 | 2.424162e-54 | -8.615850e-47 |
| Msa0343240 | Msa0729590 | 0.811942 | 5.438624e-51 | -8.615850e-47 |
| Msa0343240 | Msa0741710 | 0.811751 | 5.986810e-51 | -8.615850e-47 |
| Msa0343240 | Msa0766540 | 0.812351 | 4.429652e-51 | -8.615850e-47 |
| Msa0343240 | Msa0840450 | 0.814698 | 1.349627e-51 | -8.615850e-47 |
| Msa0343240 | Msa0876150 | 0.835409 | 1.706795e-56 | -8.615850e-47 |
| Msa0343240 | Msa0912110 | 0.804543 | 2.053615e-49 | -8.615850e-47 |
| Msa0343240 | Msa0928840 | 0.817621 | 2.999575e-52 | -8.615850e-47 |
| Msa0343240 | Msa0937350 | 0.823464 | 1.365728e-53 | -8.615850e-47 |
| Msa0343240 | Msa0949850 | 0.820194 | 7.800850e-53 | -8.615850e-47 |
| Msa0343240 | Msa0974660 | 0.805272 | 1.446320e-49 | -8.615850e-47 |
| Msa0343240 | Msa0985430 | 0.805877 | 1.079910e-49 | -8.615850e-47 |
| Msa0343240 | Msa0986620 | 0.800168 | 1.635401e-48 | -8.615850e-47 |
| Msa0343240 | Msa1031620 | 0.804766 | 1.844987e-49 | -8.615850e-47 |
| Msa0343240 | Msa1031650 | 0.834467 | 2.947477e-56 | -8.615850e-47 |
| Msa0343240 | Msa1039860 | 0.809557 | 1.784285e-50 | -8.615850e-47 |
| Msa0343240 | Msa1040030 | 0.805252 | 1.460534e-49 | -8.615850e-47 |
| Msa0343240 | Msa1044790 | 0.816546 | 5.229277e-52 | -8.615850e-47 |
| Msa0343240 | Msa1058980 | 0.812928 | 3.312199e-51 | -8.615850e-47 |
| Msa0343240 | Msa1066930 | 0.820767 | 5.763412e-53 | -8.615850e-47 |
| Msa0343240 | Msa1098470 | 0.804277 | 2.333624e-49 | -8.615850e-47 |
| Msa0343240 | Msa1109500 | 0.810396 | 1.176892e-50 | -8.615850e-47 |
| Msa0343240 | Msa1118870 | 0.822553 | 2.227146e-53 | -8.615850e-47 |
| Msa0343240 | Msa1118890 | 0.800809 | 1.210629e-48 | -8.615850e-47 |
| Msa0343240 | Msa1130070 | 0.806239 | 9.060560e-50 | -8.615850e-47 |
| Msa0343240 | Msa1140940 | 0.832836 | 7.528971e-56 | -8.615850e-47 |
| Msa0343240 | Msa1144420 | 0.827307 | 1.681722e-54 | -8.615850e-47 |
| Msa0343240 | Msa1150130 | 0.848787 | 4.906566e-60 | -8.615850e-47 |
| Msa0343240 | Msa1196990 | 0.815316 | 9.842599e-52 | -8.615850e-47 |
| Msa0343240 | Msa1279240 | 0.822419 | 2.392815e-53 | -8.615850e-47 |
| Msa0343240 | Msa1287640 | 0.801676 | 8.048952e-49 | -8.615850e-47 |
| Msa0343240 | Msa1317340 | 0.818558 | 1.841496e-52 | -8.615850e-47 |
| Msa0343240 | Msa1331900 | 0.814982 | 1.167084e-51 | -8.615850e-47 |
| Msa0343240 | Msa1364420 | 0.804956 | 1.684107e-49 | -8.615850e-47 |
| Msa0343240 | Msa1368800 | 0.832267 | 1.041902e-55 | -8.615850e-47 |
| Msa0343240 | Msa1372570 | 0.828243 | 1.001851e-54 | -8.615850e-47 |
| Msa0343240 | Msa1374610 | 0.811548 | 6.625832e-51 | -8.615850e-47 |
| Msa0343240 | Msa1378840 | 0.812593 | 3.920956e-51 | -8.615850e-47 |
| Msa0343240 | Msa1386020 | 0.806119 | 9.604567e-50 | -8.615850e-47 |
| Msa0343240 | Msa1393550 | 0.805333 | 1.404148e-49 | -8.615850e-47 |
| Msa0343240 | Msa1420130 | 0.805687 | 1.183606e-49 | -8.615850e-47 |
| Msa0343240 | Msa1426310 | 0.806525 | 7.884548e-50 | -8.615850e-47 |
| Msa0343240 | Msa1432350 | 0.809004 | 2.344652e-50 | -8.615850e-47 |
| Msa0343240 | Msa1463500 | 0.804750 | 1.859204e-49 | -8.615850e-47 |
| Msa0343240 | Msa1466170 | 0.813120 | 3.006068e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343240 | MtrunA17_Chr3g0123101 | 94.595 | 222 | 11 | 1 | 1 | 222 | 1 | 221 | 7.33e-137 | 382 |
| Msa0343240 | MtrunA17_Chr3g0099321 | 44.206 | 233 | 102 | 9 | 4 | 222 | 17 | 235 | 7.18e-56 | 177 |
| Msa0343240 | MtrunA17_Chr3g0127731 | 41.250 | 160 | 74 | 4 | 64 | 222 | 95 | 235 | 1.20e-33 | 120 |
| Msa0343240 | MtrunA17_Chr4g0020981 | 33.121 | 157 | 86 | 5 | 68 | 222 | 70 | 209 | 7.65e-21 | 86.7 |
| Msa0343240 | MtrunA17_Chr7g0265191 | 43.590 | 78 | 38 | 2 | 132 | 208 | 10 | 82 | 2.53e-13 | 63.9 |
| Msa0343240 | MtrunA17_Chr4g0046741 | 34.783 | 92 | 57 | 2 | 124 | 212 | 38 | 129 | 4.92e-13 | 64.3 |
| Msa0343240 | MtrunA17_Chr5g0436181 | 27.941 | 136 | 81 | 4 | 81 | 207 | 7 | 134 | 2.04e-12 | 62.8 |
| Msa0343240 | MtrunA17_Chr4g0003341 | 35.088 | 114 | 64 | 2 | 119 | 222 | 118 | 231 | 2.58e-12 | 63.9 |
| Msa0343240 | MtrunA17_Chr6g0458261 | 36.458 | 96 | 55 | 4 | 119 | 208 | 28 | 123 | 9.30e-12 | 60.8 |
| Msa0343240 | MtrunA17_Chr6g0475941 | 28.037 | 107 | 72 | 2 | 118 | 221 | 53 | 157 | 4.86e-11 | 59.3 |
| Msa0343240 | MtrunA17_Chr4g0046751 | 31.915 | 94 | 59 | 2 | 118 | 208 | 55 | 146 | 8.11e-11 | 58.5 |
| Msa0343240 | MtrunA17_Chr4g0046821 | 31.915 | 94 | 59 | 2 | 118 | 208 | 55 | 146 | 8.28e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343240 | AT4G27670.1 | 43.182 | 176 | 71 | 7 | 56 | 222 | 72 | 227 | 5.35e-38 | 132 |
| Msa0343240 | AT1G52560.2 | 40.952 | 105 | 58 | 3 | 122 | 222 | 121 | 225 | 7.45e-20 | 84.7 |
| Msa0343240 | AT1G52560.1 | 40.952 | 105 | 58 | 3 | 122 | 222 | 128 | 232 | 8.49e-20 | 84.7 |
| Msa0343240 | AT4G25200.1 | 33.962 | 159 | 88 | 5 | 51 | 208 | 53 | 195 | 5.33e-19 | 82.0 |
| Msa0343240 | AT5G51440.1 | 32.203 | 177 | 99 | 5 | 33 | 208 | 39 | 195 | 2.31e-18 | 80.5 |
| Msa0343240 | AT1G07400.1 | 31.783 | 129 | 72 | 6 | 91 | 209 | 19 | 141 | 1.49e-12 | 63.5 |
| Msa0343240 | AT5G37670.1 | 36.792 | 106 | 58 | 4 | 125 | 221 | 28 | 133 | 7.15e-12 | 61.2 |
| Msa0343240 | AT1G53540.1 | 32.673 | 101 | 65 | 2 | 124 | 221 | 55 | 155 | 1.97e-11 | 60.5 |
| Msa0343240 | AT1G54050.1 | 34.188 | 117 | 62 | 4 | 104 | 206 | 22 | 137 | 4.99e-11 | 59.3 |
| Msa0343240 | AT1G54050.2 | 34.188 | 117 | 62 | 4 | 104 | 206 | 22 | 137 | 4.99e-11 | 59.3 |
| Msa0343240 | AT1G59860.1 | 34.951 | 103 | 60 | 4 | 117 | 215 | 46 | 145 | 5.41e-11 | 59.3 |
Find 63 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCATCATTCTTCTTCT+TGG | 0.080906 | 3_1:-1241953 | None:intergenic |
| TTCTCAAACTGCACATTCTT+TGG | 0.245312 | 3_1:-1242024 | None:intergenic |
| CTGCTGCACCGATAGGGTTA+TGG | 0.285020 | 3_1:+1241656 | Msa0343240:CDS |
| AAGGAGTAGGTGGGTATAGA+AGG | 0.294040 | 3_1:+1241794 | Msa0343240:CDS |
| ACAAAGAGGATGTTAAAGTT+TGG | 0.296691 | 3_1:+1241890 | Msa0343240:CDS |
| CACTCTTTATCCTTAAATCT+TGG | 0.324147 | 3_1:+1241478 | Msa0343240:CDS |
| TGTGCAGTTTGAGAATATTA+AGG | 0.336710 | 3_1:+1242032 | Msa0343240:CDS |
| TGCTGCACCGATAGGGTTAT+GGG | 0.365142 | 3_1:+1241657 | Msa0343240:CDS |
| CAAAGAGGATGTTAAAGTTT+GGG | 0.367241 | 3_1:+1241891 | Msa0343240:CDS |
| TTCTCTTGCTTCACCTGTCA+TGG | 0.368553 | 3_1:-1241563 | None:intergenic |
| GAATATTAAGGCTGAGGTTA+AGG | 0.368713 | 3_1:+1242044 | Msa0343240:CDS |
| AACATTAAGATCAAGGACTT+TGG | 0.390389 | 3_1:-1242112 | None:intergenic |
| CAGGTTAAGACCAAGATTTA+AGG | 0.391199 | 3_1:-1241488 | None:intergenic |
| AGTTTGTCTTGATGAACTCT+TGG | 0.419007 | 3_1:-1241521 | None:intergenic |
| TGATGAACTCTTGGAAATCA+TGG | 0.438584 | 3_1:-1241512 | None:intergenic |
| AAGGACAGTGCAAGAGATGA+TGG | 0.443408 | 3_1:+1241696 | Msa0343240:CDS |
| GTCATTGAACATTAAGATCA+AGG | 0.444311 | 3_1:-1242119 | None:intergenic |
| TCTCCTTCTTTAATCTCCCA+TGG | 0.457000 | 3_1:-1241829 | None:intergenic |
| ATTAAGGCTGAGGTTAAGGA+TGG | 0.462230 | 3_1:+1242048 | Msa0343240:CDS |
| TCATCGCCGCTACCGATTGA+AGG | 0.462817 | 3_1:+1241775 | Msa0343240:CDS |
| CTCTCTTCTTGGGTTCGGAC+TGG | 0.469722 | 3_1:-1241627 | None:intergenic |
| TCAATTGTACTCATTGCAAA+CGG | 0.479546 | 3_1:-1241745 | None:intergenic |
| CATAACCCTATCGGTGCAGC+AGG | 0.490168 | 3_1:-1241655 | None:intergenic |
| GAATAAGTAGTAGTAGCCTT+AGG | 0.490783 | 3_1:-1242090 | None:intergenic |
| CAATTGTACTCATTGCAAAC+GGG | 0.496144 | 3_1:-1241744 | None:intergenic |
| TCAATCGGTAGCGGCGATGA+AGG | 0.505690 | 3_1:-1241772 | None:intergenic |
| CTTCGAGTCAAAGCCATGAC+AGG | 0.510747 | 3_1:+1241550 | Msa0343240:CDS |
| GTTTGAGAATATTAAGGCTG+AGG | 0.515148 | 3_1:+1242038 | Msa0343240:CDS |
| AGAATGATGAAGATGAAGAA+TGG | 0.516116 | 3_1:+1241962 | Msa0343240:CDS |
| TCTTTACATAACCATTCCTA+AGG | 0.516609 | 3_1:+1242074 | Msa0343240:CDS |
| AGTAGGTGGGTATAGAAGGA+GGG | 0.522121 | 3_1:+1241798 | Msa0343240:CDS |
| ACATCCTCTTTGTTCATACC+AGG | 0.528873 | 3_1:-1241880 | None:intergenic |
| GAGTAGGTGGGTATAGAAGG+AGG | 0.533601 | 3_1:+1241797 | Msa0343240:CDS |
| CTGTCATGGCTTTGACTCGA+AGG | 0.534564 | 3_1:-1241549 | None:intergenic |
| TACCCACCTACTCCTTCAAT+CGG | 0.537111 | 3_1:-1241787 | None:intergenic |
| AACTCTTGGAAATCATGGAC+AGG | 0.539369 | 3_1:-1241507 | None:intergenic |
| TAAGGCTGAGGTTAAGGATG+GGG | 0.545488 | 3_1:+1242050 | Msa0343240:CDS |
| ACACCATGGGAGATTAAAGA+AGG | 0.546168 | 3_1:+1241826 | Msa0343240:CDS |
| GTAGGTGGGTATAGAAGGAG+GGG | 0.548522 | 3_1:+1241799 | Msa0343240:CDS |
| GAGAAAGTGAATACAAGATG+AGG | 0.559520 | 3_1:+1241848 | Msa0343240:CDS |
| GAAGAATGGTCTAAGAGCTA+TGG | 0.561468 | 3_1:+1241976 | Msa0343240:CDS |
| AAGATGAGGTTTGATATGCC+TGG | 0.574216 | 3_1:+1241862 | Msa0343240:CDS |
| TTGGGTGGAAGAGAAGATGT+TGG | 0.576341 | 3_1:+1241909 | Msa0343240:CDS |
| CCGCTACCGATTGAAGGAGT+AGG | 0.578817 | 3_1:+1241781 | Msa0343240:CDS |
| AGAGGATGTTAAAGTTTGGG+TGG | 0.581219 | 3_1:+1241894 | Msa0343240:CDS |
| TCTTGCACTGTCCTTGTCGT+AGG | 0.581285 | 3_1:-1241688 | None:intergenic |
| GGGAACAATGGAAAGCATGA+TGG | 0.589950 | 3_1:+1241717 | Msa0343240:CDS |
| TCTTCTTGGGTTCGGACTGG+CGG | 0.591487 | 3_1:-1241624 | None:intergenic |
| TTAAGGCTGAGGTTAAGGAT+GGG | 0.596993 | 3_1:+1242049 | Msa0343240:CDS |
| GCAAGAGATGATGGGAACAA+TGG | 0.598164 | 3_1:+1241705 | Msa0343240:CDS |
| AATCGATCCCATAACCCTAT+CGG | 0.598439 | 3_1:-1241664 | None:intergenic |
| AGGACAGTGCAAGAGATGAT+GGG | 0.601662 | 3_1:+1241697 | Msa0343240:CDS |
| TATTGTTTGATCTTGAAACA+TGG | 0.608054 | 3_1:-1241594 | None:intergenic |
| AGTAGTAGTAGCCTTAGGAA+TGG | 0.626005 | 3_1:-1242085 | None:intergenic |
| TTGCAATGAGTACAATTGAG+TGG | 0.632366 | 3_1:+1241749 | Msa0343240:CDS |
| CTACCGATTGAAGGAGTAGG+TGG | 0.639864 | 3_1:+1241784 | Msa0343240:CDS |
| AAGGAGGGGAAGAACACCAT+GGG | 0.642482 | 3_1:+1241813 | Msa0343240:CDS |
| AATGGTCTAAGAGCTATGGT+AGG | 0.662268 | 3_1:+1241980 | Msa0343240:CDS |
| CCTACTCCTTCAATCGGTAG+CGG | 0.682306 | 3_1:-1241781 | None:intergenic |
| TACCGATTGAAGGAGTAGGT+GGG | 0.683545 | 3_1:+1241785 | Msa0343240:CDS |
| GAAGGAGGGGAAGAACACCA+TGG | 0.687857 | 3_1:+1241812 | Msa0343240:CDS |
| GGGATCGATTTCCTACGACA+AGG | 0.701576 | 3_1:+1241677 | Msa0343240:CDS |
| TATGCCTGGTATGAACAAAG+AGG | 0.732695 | 3_1:+1241876 | Msa0343240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TATTGTTTGATCTTGAAACA+TGG | - | chr3_1:1241597-1241616 | None:intergenic | 25.0% |
| CACTCTTTATCCTTAAATCT+TGG | + | chr3_1:1241478-1241497 | Msa0343240:CDS | 30.0% | |
| TCAATTGTACTCATTGCAAA+CGG | - | chr3_1:1241748-1241767 | None:intergenic | 30.0% | |
| ACAAAGAGGATGTTAAAGTT+TGG | + | chr3_1:1241890-1241909 | Msa0343240:CDS | 30.0% | |
| CAAAGAGGATGTTAAAGTTT+GGG | + | chr3_1:1241891-1241910 | Msa0343240:CDS | 30.0% | |
| ATCTTCATCATTCTTCTTCT+TGG | - | chr3_1:1241956-1241975 | None:intergenic | 30.0% | |
| AGAATGATGAAGATGAAGAA+TGG | + | chr3_1:1241962-1241981 | Msa0343240:CDS | 30.0% | |
| TGTGCAGTTTGAGAATATTA+AGG | + | chr3_1:1242032-1242051 | Msa0343240:CDS | 30.0% | |
| TCTTTACATAACCATTCCTA+AGG | + | chr3_1:1242074-1242093 | Msa0343240:CDS | 30.0% | |
| AACATTAAGATCAAGGACTT+TGG | - | chr3_1:1242115-1242134 | None:intergenic | 30.0% | |
| CAGGTTAAGACCAAGATTTA+AGG | - | chr3_1:1241491-1241510 | None:intergenic | 35.0% | |
| TGATGAACTCTTGGAAATCA+TGG | - | chr3_1:1241515-1241534 | None:intergenic | 35.0% | |
| AGTTTGTCTTGATGAACTCT+TGG | - | chr3_1:1241524-1241543 | None:intergenic | 35.0% | |
| AAAAACTCTCTTCTTGGGTT+CGG | - | chr3_1:1241635-1241654 | None:intergenic | 35.0% | |
| CAATTGTACTCATTGCAAAC+GGG | - | chr3_1:1241747-1241766 | None:intergenic | 35.0% | |
| TTGCAATGAGTACAATTGAG+TGG | + | chr3_1:1241749-1241768 | Msa0343240:CDS | 35.0% | |
| GAGAAAGTGAATACAAGATG+AGG | + | chr3_1:1241848-1241867 | Msa0343240:CDS | 35.0% | |
| TTCTCAAACTGCACATTCTT+TGG | - | chr3_1:1242027-1242046 | None:intergenic | 35.0% | |
| GTTTGAGAATATTAAGGCTG+AGG | + | chr3_1:1242038-1242057 | Msa0343240:CDS | 35.0% | |
| GAATATTAAGGCTGAGGTTA+AGG | + | chr3_1:1242044-1242063 | Msa0343240:CDS | 35.0% | |
| GAATAAGTAGTAGTAGCCTT+AGG | - | chr3_1:1242093-1242112 | None:intergenic | 35.0% | |
| AACTCTTGGAAATCATGGAC+AGG | - | chr3_1:1241510-1241529 | None:intergenic | 40.0% | |
| GCAGGAAAAACTCTCTTCTT+GGG | - | chr3_1:1241640-1241659 | None:intergenic | 40.0% | |
| AGCAGGAAAAACTCTCTTCT+TGG | - | chr3_1:1241641-1241660 | None:intergenic | 40.0% | |
| AATCGATCCCATAACCCTAT+CGG | - | chr3_1:1241667-1241686 | None:intergenic | 40.0% | |
| ACACCATGGGAGATTAAAGA+AGG | + | chr3_1:1241826-1241845 | Msa0343240:CDS | 40.0% | |
| TCTCCTTCTTTAATCTCCCA+TGG | - | chr3_1:1241832-1241851 | None:intergenic | 40.0% | |
| AAGATGAGGTTTGATATGCC+TGG | + | chr3_1:1241862-1241881 | Msa0343240:CDS | 40.0% | |
| TATGCCTGGTATGAACAAAG+AGG | + | chr3_1:1241876-1241895 | Msa0343240:CDS | 40.0% | |
| ACATCCTCTTTGTTCATACC+AGG | - | chr3_1:1241883-1241902 | None:intergenic | 40.0% | |
| AGAGGATGTTAAAGTTTGGG+TGG | + | chr3_1:1241894-1241913 | Msa0343240:CDS | 40.0% | |
| GAAGAATGGTCTAAGAGCTA+TGG | + | chr3_1:1241976-1241995 | Msa0343240:CDS | 40.0% | |
| AATGGTCTAAGAGCTATGGT+AGG | + | chr3_1:1241980-1241999 | Msa0343240:CDS | 40.0% | |
| ATTAAGGCTGAGGTTAAGGA+TGG | + | chr3_1:1242048-1242067 | Msa0343240:CDS | 40.0% | |
| TTAAGGCTGAGGTTAAGGAT+GGG | + | chr3_1:1242049-1242068 | Msa0343240:CDS | 40.0% | |
| ! | AGTAGTAGTAGCCTTAGGAA+TGG | - | chr3_1:1242088-1242107 | None:intergenic | 40.0% |
| TTCTCTTGCTTCACCTGTCA+TGG | - | chr3_1:1241566-1241585 | None:intergenic | 45.0% | |
| !! | TTTTTCCTGCTGCACCGATA+GGG | + | chr3_1:1241650-1241669 | Msa0343240:CDS | 45.0% |
| AAGGACAGTGCAAGAGATGA+TGG | + | chr3_1:1241696-1241715 | Msa0343240:CDS | 45.0% | |
| AGGACAGTGCAAGAGATGAT+GGG | + | chr3_1:1241697-1241716 | Msa0343240:CDS | 45.0% | |
| !! | GCAAGAGATGATGGGAACAA+TGG | + | chr3_1:1241705-1241724 | Msa0343240:CDS | 45.0% |
| ! | GGGAACAATGGAAAGCATGA+TGG | + | chr3_1:1241717-1241736 | Msa0343240:CDS | 45.0% |
| ! | TACCGATTGAAGGAGTAGGT+GGG | + | chr3_1:1241785-1241804 | Msa0343240:CDS | 45.0% |
| TACCCACCTACTCCTTCAAT+CGG | - | chr3_1:1241790-1241809 | None:intergenic | 45.0% | |
| AAGGAGTAGGTGGGTATAGA+AGG | + | chr3_1:1241794-1241813 | Msa0343240:CDS | 45.0% | |
| AGTAGGTGGGTATAGAAGGA+GGG | + | chr3_1:1241798-1241817 | Msa0343240:CDS | 45.0% | |
| TTGGGTGGAAGAGAAGATGT+TGG | + | chr3_1:1241909-1241928 | Msa0343240:CDS | 45.0% | |
| TAAGGCTGAGGTTAAGGATG+GGG | + | chr3_1:1242050-1242069 | Msa0343240:CDS | 45.0% | |
| !! | CTGTCATGGCTTTGACTCGA+AGG | - | chr3_1:1241552-1241571 | None:intergenic | 50.0% |
| CTTCGAGTCAAAGCCATGAC+AGG | + | chr3_1:1241550-1241569 | Msa0343240:CDS | 50.0% | |
| !! | GTTTTTCCTGCTGCACCGAT+AGG | + | chr3_1:1241649-1241668 | Msa0343240:CDS | 50.0% |
| ! | TGCTGCACCGATAGGGTTAT+GGG | + | chr3_1:1241657-1241676 | Msa0343240:CDS | 50.0% |
| ! | GGGATCGATTTCCTACGACA+AGG | + | chr3_1:1241677-1241696 | Msa0343240:CDS | 50.0% |
| TCTTGCACTGTCCTTGTCGT+AGG | - | chr3_1:1241691-1241710 | None:intergenic | 50.0% | |
| CCTACTCCTTCAATCGGTAG+CGG | - | chr3_1:1241784-1241803 | None:intergenic | 50.0% | |
| ! | CTACCGATTGAAGGAGTAGG+TGG | + | chr3_1:1241784-1241803 | Msa0343240:CDS | 50.0% |
| GAGTAGGTGGGTATAGAAGG+AGG | + | chr3_1:1241797-1241816 | Msa0343240:CDS | 50.0% | |
| GTAGGTGGGTATAGAAGGAG+GGG | + | chr3_1:1241799-1241818 | Msa0343240:CDS | 50.0% | |
| AAGGAGGGGAAGAACACCAT+GGG | + | chr3_1:1241813-1241832 | Msa0343240:CDS | 50.0% | |
| ! | TCTTCTTGGGTTCGGACTGG+CGG | - | chr3_1:1241627-1241646 | None:intergenic | 55.0% |
| CTCTCTTCTTGGGTTCGGAC+TGG | - | chr3_1:1241630-1241649 | None:intergenic | 55.0% | |
| CATAACCCTATCGGTGCAGC+AGG | - | chr3_1:1241658-1241677 | None:intergenic | 55.0% | |
| ! | CTGCTGCACCGATAGGGTTA+TGG | + | chr3_1:1241656-1241675 | Msa0343240:CDS | 55.0% |
| ! | TCAATCGGTAGCGGCGATGA+AGG | - | chr3_1:1241775-1241794 | None:intergenic | 55.0% |
| ! | TCATCGCCGCTACCGATTGA+AGG | + | chr3_1:1241775-1241794 | Msa0343240:CDS | 55.0% |
| ! | CCGCTACCGATTGAAGGAGT+AGG | + | chr3_1:1241781-1241800 | Msa0343240:CDS | 55.0% |
| GAAGGAGGGGAAGAACACCA+TGG | + | chr3_1:1241812-1241831 | Msa0343240:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 1241472 | 1242140 | 1241472 | ID=Msa0343240;Name=Msa0343240 |
| chr3_1 | mRNA | 1241472 | 1242140 | 1241472 | ID=Msa0343240-mRNA-1;Parent=Msa0343240;Name=Msa0343240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|222 |
| chr3_1 | exon | 1241472 | 1242140 | 1241472 | ID=Msa0343240-mRNA-1:exon:383;Parent=Msa0343240-mRNA-1 |
| chr3_1 | CDS | 1241472 | 1242140 | 1241472 | ID=Msa0343240-mRNA-1:cds;Parent=Msa0343240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
