AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0766540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0766540 MtrunA17_Chr5g0417771 95.337 193 6 2 1 190 69 261 6.43e-131 367
Msa0766540 MtrunA17_Chr2g0319281 29.358 109 77 0 70 178 104 212 1.17e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0766540 AT1G14150.1 55.155 194 79 3 1 190 1 190 1.14e-69 210
Msa0766540 AT1G14150.2 49.693 163 74 3 1 159 1 159 1.31e-49 158
Msa0766540 AT4G21280.2 25.862 116 86 0 75 190 109 224 1.55e-12 64.3
Msa0766540 AT4G21280.1 25.862 116 86 0 75 190 108 223 1.66e-12 63.9
Msa0766540 AT4G05180.2 24.324 185 114 5 31 190 47 230 2.61e-12 63.5
Msa0766540 AT4G05180.1 24.324 185 114 5 31 190 47 230 2.61e-12 63.5

Find 61 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTAGCACTAGCACAAAAT+TGG 0.178777 5_2:-28356615 Msa0766540:CDS
CTGAAGGGTTACATAATCTT+AGG 0.211540 5_2:-28356510 Msa0766540:CDS
TCTAGTTCAACTAAGGTTCT+AGG 0.230221 5_2:+28355058 None:intergenic
TGTTGCCCTGTTTATACAAT+TGG 0.278093 5_2:+28356937 None:intergenic
AGCTGCAGGGTATTGATATT+TGG 0.290335 5_2:-28355218 Msa0766540:three_prime_UTR
CAAGACCCAATTGTATAAAC+AGG 0.348332 5_2:-28356943 Msa0766540:five_prime_UTR
TGAATGGTGTATTTGGACTA+TGG 0.358548 5_2:+28356882 None:intergenic
ATCCTTAAAACTGCATCCTC+AGG 0.358678 5_2:+28356544 None:intergenic
GAAACAGAATTATCTTGAAC+AGG 0.378711 5_2:-28356437 Msa0766540:CDS
CCAAGTCATTCATTCATTGT+TGG 0.380744 5_2:+28357014 None:intergenic
AGTGGGTTTGATGCATTTGT+AGG 0.387900 5_2:+28357085 None:intergenic
ACTAGCACTAGCACAAAATT+GGG 0.390071 5_2:-28356614 Msa0766540:CDS
CCCTTAGACCGACCTATTGT+AGG 0.390549 5_2:+28354876 None:intergenic
TTAAATTGAACATATATAGT+AGG 0.393752 5_2:-28355136 Msa0766540:three_prime_UTR
GTACATCAATAATATGCTTA+AGG 0.403725 5_2:+28355099 None:intergenic
AATGTAAATATTTATGGTAG+TGG 0.410913 5_2:+28357067 None:intergenic
TCATCTCATCTAAACACTCT+TGG 0.416050 5_2:-28355024 Msa0766540:three_prime_UTR
TGTTGGAAACTTTGTCTTGG+AGG 0.429693 5_2:-28356483 Msa0766540:CDS
GTTGCCCTGTTTATACAATT+GGG 0.431635 5_2:+28356938 None:intergenic
TTATTGATGTACATGTTTGT+TGG 0.432490 5_2:-28355088 Msa0766540:three_prime_UTR
TCAATGTCTTCTCGTAGTAT+AGG 0.434954 5_2:+28355287 None:intergenic
TGTGTTTGGTGATGTGGGCA+TGG 0.453977 5_2:+28356767 None:intergenic
AACATTTCTAGCAACATCAA+TGG 0.458082 5_2:-28356665 Msa0766540:CDS
CATCTCATCTAAACACTCTT+GGG 0.460546 5_2:-28355023 Msa0766540:three_prime_UTR
ATGTAAATATTTATGGTAGT+GGG 0.462649 5_2:+28357068 None:intergenic
TGTAGTGGCATGGGTGAAGC+TGG 0.465948 5_2:+28356795 None:intergenic
AGGTATGATTCATATACCTT+TGG 0.468647 5_2:+28355307 None:intergenic
ACATAATCTTAGGGAAATGT+TGG 0.471226 5_2:-28356500 Msa0766540:CDS
GGTCTCTTCTAGTTCAACTA+AGG 0.484404 5_2:+28355051 None:intergenic
ACATTTATGACACCTACAAT+AGG 0.488299 5_2:-28354888 None:intergenic
AAATGTTGGAAACTTTGTCT+TGG 0.489316 5_2:-28356486 Msa0766540:CDS
CCAACAATGAATGAATGACT+TGG 0.493289 5_2:-28357014 Msa0766540:five_prime_UTR
GCATCCTCAGGGGACAGCCC+TGG 0.494926 5_2:+28356556 None:intergenic
TAGTGCAAAGTTGAAGCTGC+AGG 0.496035 5_2:-28355232 Msa0766540:three_prime_UTR
CATGGAGTAGTGTAGTGGCA+TGG 0.498351 5_2:+28356785 None:intergenic
TGAAGGGTTACATAATCTTA+GGG 0.498720 5_2:-28356509 Msa0766540:CDS
GGTGTATGAAGATTTAGTTA+TGG 0.504016 5_2:+28356846 None:intergenic
AGGATAAAACAAACAGCTGA+AGG 0.514504 5_2:-28356526 Msa0766540:CDS
TTTCTAGCAACATCAATGGT+TGG 0.515555 5_2:-28356661 Msa0766540:CDS
TCCTTAAAACTGCATCCTCA+GGG 0.528618 5_2:+28356545 None:intergenic
ATGGAGTAGTGTAGTGGCAT+GGG 0.538564 5_2:+28356786 None:intergenic
TGCAGGGTATTGATATTTGG+TGG 0.543010 5_2:-28355215 Msa0766540:three_prime_UTR
ATGAAGATTTAGTTATGGTA+TGG 0.580702 5_2:+28356851 None:intergenic
TCGTTATGTGCGGACACCAA+AGG 0.589271 5_2:-28355323 Msa0766540:CDS
GAAATCAATAGATGAACTTG+TGG 0.590899 5_2:-28355266 Msa0766540:CDS
TGTTAAAACTGCTAATGAGT+TGG 0.596114 5_2:-28356365 Msa0766540:CDS
GGATAAAACAAACAGCTGAA+GGG 0.620469 5_2:-28356525 Msa0766540:CDS
TATGCCAGGGCTGTCCCCTG+AGG 0.621756 5_2:-28356560 Msa0766540:CDS
AGTGCAAAGTTGAAGCTGCA+GGG 0.632249 5_2:-28355231 Msa0766540:three_prime_UTR
TTTGCCTGAAAATCGTCGCA+AGG 0.639622 5_2:-28356392 Msa0766540:CDS
AAGACCCAATTGTATAAACA+GGG 0.652669 5_2:-28356942 Msa0766540:five_prime_UTR
GTTGGTTGATAATTTGACTG+AGG 0.655182 5_2:-28356347 Msa0766540:intron
TCCAGATGGATCGTTATGTG+CGG 0.669027 5_2:-28355333 Msa0766540:intron
CTAGCACTAGCACAAAATTG+GGG 0.669506 5_2:-28356613 Msa0766540:CDS
GGCATGGGTGAAGCTGGACA+TGG 0.669604 5_2:+28356801 None:intergenic
ATTGTATAAACAGGGCAACA+CGG 0.669899 5_2:-28356934 Msa0766540:five_prime_UTR
GTGTTTAGATGAGATGACAC+AGG 0.680767 5_2:+28355030 None:intergenic
GTGGGCATGGAGTAGTGTAG+TGG 0.685330 5_2:+28356780 None:intergenic
CCTTAAAACTGCATCCTCAG+GGG 0.690922 5_2:+28356546 None:intergenic
GGTCTTGAGATTATGCCACG+TGG 0.740988 5_2:+28356959 None:intergenic
TGGATAACAAAAGTTCCACG+TGG 0.790121 5_2:-28356974 Msa0766540:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAAAATGTAAATATTTA+TGG + chr5_2:28354919-28354938 None:intergenic 10.0%
!! GAAAAAAATGTAAATATTTA+TGG + chr5_2:28354919-28354938 None:intergenic 10.0%
!!! AAAATTAAGCATTTTCTTTT+TGG + chr5_2:28354943-28354962 None:intergenic 15.0%
!!! TTATTACTATAATTCTGAAA+AGG + chr5_2:28355926-28355945 None:intergenic 15.0%
!!! TCTATTAGTTGAATTTTTTA+AGG + chr5_2:28356091-28356110 None:intergenic 15.0%
!!! TGATTTTCTCAAATTATTAA+TGG + chr5_2:28356315-28356334 None:intergenic 15.0%
!! TGAAATTGTTAATGAATATA+AGG - chr5_2:28356461-28356480 Msa0766540:CDS 15.0%
!!! TGTATTTTTAGTATATGTTT+AGG - chr5_2:28356517-28356536 Msa0766540:CDS 15.0%
!! TACAAGTTAATTATTAATAG+TGG - chr5_2:28356592-28356611 Msa0766540:CDS 15.0%
!! TTAAATTGAACATATATAGT+AGG - chr5_2:28356841-28356860 Msa0766540:five_prime_UTR 15.0%
!!! AAAATTAAGCATTTTCTTTT+TGG + chr5_2:28354943-28354962 None:intergenic 15.0%
!!! TTATTACTATAATTCTGAAA+AGG + chr5_2:28355926-28355945 None:intergenic 15.0%
!!! TCTATTAGTTGAATTTTTTA+AGG + chr5_2:28356091-28356110 None:intergenic 15.0%
!!! TGATTTTCTCAAATTATTAA+TGG + chr5_2:28356315-28356334 None:intergenic 15.0%
!! TGAAATTGTTAATGAATATA+AGG - chr5_2:28356461-28356480 Msa0766540:CDS 15.0%
!!! TGTATTTTTAGTATATGTTT+AGG - chr5_2:28356517-28356536 Msa0766540:CDS 15.0%
!! TACAAGTTAATTATTAATAG+TGG - chr5_2:28356592-28356611 Msa0766540:CDS 15.0%
!! TTAAATTGAACATATATAGT+AGG - chr5_2:28356841-28356860 Msa0766540:five_prime_UTR 15.0%
!! ATGTAAATATTTATGGTAGT+GGG + chr5_2:28354912-28354931 None:intergenic 20.0%
!! AATGTAAATATTTATGGTAG+TGG + chr5_2:28354913-28354932 None:intergenic 20.0%
!!! ATTTTTTGTGTGGATATTTT+TGG + chr5_2:28355155-28355174 None:intergenic 20.0%
!!! TCAATTTCATGGATTAATTT+GGG - chr5_2:28356120-28356139 Msa0766540:intron 20.0%
!!! AATTTATATACCTGTTTTTG+AGG + chr5_2:28356186-28356205 None:intergenic 20.0%
!! ATGTAAATATTTATGGTAGT+GGG + chr5_2:28354912-28354931 None:intergenic 20.0%
!! AATGTAAATATTTATGGTAG+TGG + chr5_2:28354913-28354932 None:intergenic 20.0%
!!! ATTTTTTGTGTGGATATTTT+TGG + chr5_2:28355155-28355174 None:intergenic 20.0%
!!! TCAATTTCATGGATTAATTT+GGG - chr5_2:28356120-28356139 Msa0766540:intron 20.0%
!!! AATTTATATACCTGTTTTTG+AGG + chr5_2:28356186-28356205 None:intergenic 20.0%
!! TTTGGACTATGGAAATTTTT+GGG + chr5_2:28355087-28355106 None:intergenic 25.0%
!! ATTTGGACTATGGAAATTTT+TGG + chr5_2:28355088-28355107 None:intergenic 25.0%
! ATGAAGATTTAGTTATGGTA+TGG + chr5_2:28355129-28355148 None:intergenic 25.0%
!!! AAAGAACATTTTTTTATGCC+AGG - chr5_2:28355403-28355422 Msa0766540:intron 25.0%
!!! AAGAACATTTTTTTATGCCA+GGG - chr5_2:28355404-28355423 Msa0766540:intron 25.0%
!!! AGTCTATGAACATGTTTTTT+CGG - chr5_2:28355727-28355746 Msa0766540:intron 25.0%
! AAAAGGAGAATGTTAAATAG+TGG + chr5_2:28355909-28355928 None:intergenic 25.0%
! TTGTGTTAAATTAGTTAAGC+TGG - chr5_2:28356061-28356080 Msa0766540:intron 25.0%
! TGTGTTAAATTAGTTAAGCT+GGG - chr5_2:28356062-28356081 Msa0766540:intron 25.0%
! GATTCAAATTGTCAATTTCA+TGG - chr5_2:28356109-28356128 Msa0766540:intron 25.0%
!! GTCAATTTCATGGATTAATT+TGG - chr5_2:28356119-28356138 Msa0766540:intron 25.0%
!!! TAGTTTTAATCTATGAAGCA+TGG - chr5_2:28356256-28356275 Msa0766540:intron 25.0%
! TTCAGTGTAATTATATGTGT+CGG - chr5_2:28356340-28356359 Msa0766540:intron 25.0%
!! TATGTAGAACAGTCAATTTT+TGG + chr5_2:28356418-28356437 None:intergenic 25.0%
! AAAAATTGACTGTTCTACAT+AGG - chr5_2:28356417-28356436 Msa0766540:CDS 25.0%
! GTACATCAATAATATGCTTA+AGG + chr5_2:28356881-28356900 None:intergenic 25.0%
! TTATTGATGTACATGTTTGT+TGG - chr5_2:28356889-28356908 Msa0766540:five_prime_UTR 25.0%
!! TTTGGACTATGGAAATTTTT+GGG + chr5_2:28355087-28355106 None:intergenic 25.0%
!! ATTTGGACTATGGAAATTTT+TGG + chr5_2:28355088-28355107 None:intergenic 25.0%
! ATGAAGATTTAGTTATGGTA+TGG + chr5_2:28355129-28355148 None:intergenic 25.0%
!!! AAAGAACATTTTTTTATGCC+AGG - chr5_2:28355403-28355422 Msa0766540:intron 25.0%
!!! AAGAACATTTTTTTATGCCA+GGG - chr5_2:28355404-28355423 Msa0766540:intron 25.0%
!!! AGTCTATGAACATGTTTTTT+CGG - chr5_2:28355727-28355746 Msa0766540:intron 25.0%
! AAAAGGAGAATGTTAAATAG+TGG + chr5_2:28355909-28355928 None:intergenic 25.0%
! TTGTGTTAAATTAGTTAAGC+TGG - chr5_2:28356061-28356080 Msa0766540:intron 25.0%
! TGTGTTAAATTAGTTAAGCT+GGG - chr5_2:28356062-28356081 Msa0766540:intron 25.0%
! GATTCAAATTGTCAATTTCA+TGG - chr5_2:28356109-28356128 Msa0766540:intron 25.0%
!! GTCAATTTCATGGATTAATT+TGG - chr5_2:28356119-28356138 Msa0766540:intron 25.0%
!!! TAGTTTTAATCTATGAAGCA+TGG - chr5_2:28356256-28356275 Msa0766540:intron 25.0%
! TTCAGTGTAATTATATGTGT+CGG - chr5_2:28356340-28356359 Msa0766540:intron 25.0%
!! TATGTAGAACAGTCAATTTT+TGG + chr5_2:28356418-28356437 None:intergenic 25.0%
! AAAAATTGACTGTTCTACAT+AGG - chr5_2:28356417-28356436 Msa0766540:CDS 25.0%
! GTACATCAATAATATGCTTA+AGG + chr5_2:28356881-28356900 None:intergenic 25.0%
! TTATTGATGTACATGTTTGT+TGG - chr5_2:28356889-28356908 Msa0766540:five_prime_UTR 25.0%
AAGACCCAATTGTATAAACA+GGG - chr5_2:28355035-28355054 Msa0766540:three_prime_UTR 30.0%
!! ATTTTTGGGCAGGTTTTTAT+TGG + chr5_2:28355073-28355092 None:intergenic 30.0%
! GTGATTTTGAATGGTGTATT+TGG + chr5_2:28355105-28355124 None:intergenic 30.0%
GGTGTATGAAGATTTAGTTA+TGG + chr5_2:28355134-28355153 None:intergenic 30.0%
!! GTTTGAAGTGTTTTTGTGTT+TGG + chr5_2:28355227-28355246 None:intergenic 30.0%
!! AACATTTCTAGCAACATCAA+TGG - chr5_2:28355312-28355331 Msa0766540:CDS 30.0%
TGAAGGGTTACATAATCTTA+GGG - chr5_2:28355468-28355487 Msa0766540:intron 30.0%
ACATAATCTTAGGGAAATGT+TGG - chr5_2:28355477-28355496 Msa0766540:intron 30.0%
AAATGTTGGAAACTTTGTCT+TGG - chr5_2:28355491-28355510 Msa0766540:intron 30.0%
GAAACAGAATTATCTTGAAC+AGG - chr5_2:28355540-28355559 Msa0766540:intron 30.0%
TGTTAAAACTGCTAATGAGT+TGG - chr5_2:28355612-28355631 Msa0766540:intron 30.0%
!! TATGCTTAATTTGTTGCTTG+TGG - chr5_2:28355657-28355676 Msa0766540:intron 30.0%
!!! TATGAACATGTTTTTTCGGA+GGG - chr5_2:28355731-28355750 Msa0766540:intron 30.0%
AATTAGCTATCCTCAAAAAC+AGG - chr5_2:28356173-28356192 Msa0766540:intron 30.0%
TGACAAAATAGAGTTCAGAT+TGG + chr5_2:28356225-28356244 None:intergenic 30.0%
!! GAACAGTCAATTTTTGGATT+AGG + chr5_2:28356412-28356431 None:intergenic 30.0%
AATATAAGGTGCAATACAAG+AGG - chr5_2:28356475-28356494 Msa0766540:CDS 30.0%
! AGTATATGTTTAGGTTCGAT+TGG - chr5_2:28356526-28356545 Msa0766540:CDS 30.0%
AGGTATGATTCATATACCTT+TGG + chr5_2:28356673-28356692 None:intergenic 30.0%
GAAATCAATAGATGAACTTG+TGG - chr5_2:28356711-28356730 Msa0766540:CDS 30.0%
AAGACCCAATTGTATAAACA+GGG - chr5_2:28355035-28355054 Msa0766540:three_prime_UTR 30.0%
!! ATTTTTGGGCAGGTTTTTAT+TGG + chr5_2:28355073-28355092 None:intergenic 30.0%
! GTGATTTTGAATGGTGTATT+TGG + chr5_2:28355105-28355124 None:intergenic 30.0%
GGTGTATGAAGATTTAGTTA+TGG + chr5_2:28355134-28355153 None:intergenic 30.0%
!! GTTTGAAGTGTTTTTGTGTT+TGG + chr5_2:28355227-28355246 None:intergenic 30.0%
!! AACATTTCTAGCAACATCAA+TGG - chr5_2:28355312-28355331 Msa0766540:CDS 30.0%
TGAAGGGTTACATAATCTTA+GGG - chr5_2:28355468-28355487 Msa0766540:intron 30.0%
ACATAATCTTAGGGAAATGT+TGG - chr5_2:28355477-28355496 Msa0766540:intron 30.0%
AAATGTTGGAAACTTTGTCT+TGG - chr5_2:28355491-28355510 Msa0766540:intron 30.0%
GAAACAGAATTATCTTGAAC+AGG - chr5_2:28355540-28355559 Msa0766540:intron 30.0%
TGTTAAAACTGCTAATGAGT+TGG - chr5_2:28355612-28355631 Msa0766540:intron 30.0%
!! TATGCTTAATTTGTTGCTTG+TGG - chr5_2:28355657-28355676 Msa0766540:intron 30.0%
!!! TATGAACATGTTTTTTCGGA+GGG - chr5_2:28355731-28355750 Msa0766540:intron 30.0%
AATTAGCTATCCTCAAAAAC+AGG - chr5_2:28356173-28356192 Msa0766540:intron 30.0%
TGACAAAATAGAGTTCAGAT+TGG + chr5_2:28356225-28356244 None:intergenic 30.0%
!! GAACAGTCAATTTTTGGATT+AGG + chr5_2:28356412-28356431 None:intergenic 30.0%
AATATAAGGTGCAATACAAG+AGG - chr5_2:28356475-28356494 Msa0766540:CDS 30.0%
! AGTATATGTTTAGGTTCGAT+TGG - chr5_2:28356526-28356545 Msa0766540:CDS 30.0%
AGGTATGATTCATATACCTT+TGG + chr5_2:28356673-28356692 None:intergenic 30.0%
GAAATCAATAGATGAACTTG+TGG - chr5_2:28356711-28356730 Msa0766540:CDS 30.0%
CCAAGTCATTCATTCATTGT+TGG + chr5_2:28354966-28354985 None:intergenic 35.0%
CCAACAATGAATGAATGACT+TGG - chr5_2:28354963-28354982 Msa0766540:three_prime_UTR 35.0%
! TGGAGTTTTCTCAACTCAAA+TGG - chr5_2:28354983-28355002 Msa0766540:three_prime_UTR 35.0%
CAAGACCCAATTGTATAAAC+AGG - chr5_2:28355034-28355053 Msa0766540:three_prime_UTR 35.0%
GTTGCCCTGTTTATACAATT+GGG + chr5_2:28355042-28355061 None:intergenic 35.0%
TGTTGCCCTGTTTATACAAT+TGG + chr5_2:28355043-28355062 None:intergenic 35.0%
ATTGTATAAACAGGGCAACA+CGG - chr5_2:28355043-28355062 Msa0766540:three_prime_UTR 35.0%
TGAATGGTGTATTTGGACTA+TGG + chr5_2:28355098-28355117 None:intergenic 35.0%
! TGGTATGGTGTGATTTTGAA+TGG + chr5_2:28355114-28355133 None:intergenic 35.0%
!!! TGGACATGGTATTTTTTGTG+TGG + chr5_2:28355165-28355184 None:intergenic 35.0%
!!! GTTTTTGTGTTTGGTGATGT+GGG + chr5_2:28355218-28355237 None:intergenic 35.0%
!!! TGTTTTTGTGTTTGGTGATG+TGG + chr5_2:28355219-28355238 None:intergenic 35.0%
! TTTCTAGCAACATCAATGGT+TGG - chr5_2:28355316-28355335 Msa0766540:CDS 35.0%
ACTAGCACTAGCACAAAATT+GGG - chr5_2:28355363-28355382 Msa0766540:intron 35.0%
AGGATAAAACAAACAGCTGA+AGG - chr5_2:28355451-28355470 Msa0766540:intron 35.0%
GGATAAAACAAACAGCTGAA+GGG - chr5_2:28355452-28355471 Msa0766540:intron 35.0%
CTGAAGGGTTACATAATCTT+AGG - chr5_2:28355467-28355486 Msa0766540:intron 35.0%
!! GTTGGTTGATAATTTGACTG+AGG - chr5_2:28355630-28355649 Msa0766540:intron 35.0%
!!! CTATGAACATGTTTTTTCGG+AGG - chr5_2:28355730-28355749 Msa0766540:intron 35.0%
TCAATGTCTTCTCGTAGTAT+AGG + chr5_2:28356693-28356712 None:intergenic 35.0%
! TCTAGTTCAACTAAGGTTCT+AGG + chr5_2:28356922-28356941 None:intergenic 35.0%
TCATCTCATCTAAACACTCT+TGG - chr5_2:28356953-28356972 Msa0766540:five_prime_UTR 35.0%
CATCTCATCTAAACACTCTT+GGG - chr5_2:28356954-28356973 Msa0766540:five_prime_UTR 35.0%
CCAAGTCATTCATTCATTGT+TGG + chr5_2:28354966-28354985 None:intergenic 35.0%
CCAACAATGAATGAATGACT+TGG - chr5_2:28354963-28354982 Msa0766540:three_prime_UTR 35.0%
! TGGAGTTTTCTCAACTCAAA+TGG - chr5_2:28354983-28355002 Msa0766540:three_prime_UTR 35.0%
CAAGACCCAATTGTATAAAC+AGG - chr5_2:28355034-28355053 Msa0766540:three_prime_UTR 35.0%
GTTGCCCTGTTTATACAATT+GGG + chr5_2:28355042-28355061 None:intergenic 35.0%
TGTTGCCCTGTTTATACAAT+TGG + chr5_2:28355043-28355062 None:intergenic 35.0%
ATTGTATAAACAGGGCAACA+CGG - chr5_2:28355043-28355062 Msa0766540:three_prime_UTR 35.0%
TGAATGGTGTATTTGGACTA+TGG + chr5_2:28355098-28355117 None:intergenic 35.0%
! TGGTATGGTGTGATTTTGAA+TGG + chr5_2:28355114-28355133 None:intergenic 35.0%
!!! TGGACATGGTATTTTTTGTG+TGG + chr5_2:28355165-28355184 None:intergenic 35.0%
!!! GTTTTTGTGTTTGGTGATGT+GGG + chr5_2:28355218-28355237 None:intergenic 35.0%
!!! TGTTTTTGTGTTTGGTGATG+TGG + chr5_2:28355219-28355238 None:intergenic 35.0%
! TTTCTAGCAACATCAATGGT+TGG - chr5_2:28355316-28355335 Msa0766540:CDS 35.0%
ACTAGCACTAGCACAAAATT+GGG - chr5_2:28355363-28355382 Msa0766540:intron 35.0%
AGGATAAAACAAACAGCTGA+AGG - chr5_2:28355451-28355470 Msa0766540:intron 35.0%
GGATAAAACAAACAGCTGAA+GGG - chr5_2:28355452-28355471 Msa0766540:intron 35.0%
CTGAAGGGTTACATAATCTT+AGG - chr5_2:28355467-28355486 Msa0766540:intron 35.0%
!! GTTGGTTGATAATTTGACTG+AGG - chr5_2:28355630-28355649 Msa0766540:intron 35.0%
!!! CTATGAACATGTTTTTTCGG+AGG - chr5_2:28355730-28355749 Msa0766540:intron 35.0%
TCAATGTCTTCTCGTAGTAT+AGG + chr5_2:28356693-28356712 None:intergenic 35.0%
! TCTAGTTCAACTAAGGTTCT+AGG + chr5_2:28356922-28356941 None:intergenic 35.0%
TCATCTCATCTAAACACTCT+TGG - chr5_2:28356953-28356972 Msa0766540:five_prime_UTR 35.0%
CATCTCATCTAAACACTCTT+GGG - chr5_2:28356954-28356973 Msa0766540:five_prime_UTR 35.0%
! AGTGGGTTTGATGCATTTGT+AGG + chr5_2:28354895-28354914 None:intergenic 40.0%
TGGATAACAAAAGTTCCACG+TGG - chr5_2:28355003-28355022 Msa0766540:three_prime_UTR 40.0%
!! GACTATGGAAATTTTTGGGC+AGG + chr5_2:28355083-28355102 None:intergenic 40.0%
! CAATTTTGTGCTAGTGCTAG+TGG + chr5_2:28355364-28355383 None:intergenic 40.0%
CACTAGCACTAGCACAAAAT+TGG - chr5_2:28355362-28355381 Msa0766540:intron 40.0%
CTAGCACTAGCACAAAATTG+GGG - chr5_2:28355364-28355383 Msa0766540:intron 40.0%
TCCTTAAAACTGCATCCTCA+GGG + chr5_2:28355435-28355454 None:intergenic 40.0%
ATCCTTAAAACTGCATCCTC+AGG + chr5_2:28355436-28355455 None:intergenic 40.0%
TGTTGGAAACTTTGTCTTGG+AGG - chr5_2:28355494-28355513 Msa0766540:intron 40.0%
AGTTGCTTAACCAATGTCTG+AGG - chr5_2:28355883-28355902 Msa0766540:intron 40.0%
TAAATAGTGGCCTCAGACAT+TGG + chr5_2:28355896-28355915 None:intergenic 40.0%
TTCGTCCAAATTAGCTCATC+TGG - chr5_2:28356005-28356024 Msa0766540:intron 40.0%
TTGAGCCAGATGAGCTAATT+TGG + chr5_2:28356013-28356032 None:intergenic 40.0%
! ATATTTTTCCCCTCTCCAGA+TGG - chr5_2:28356630-28356649 Msa0766540:CDS 40.0%
!! AGCTGCAGGGTATTGATATT+TGG - chr5_2:28356759-28356778 Msa0766540:CDS 40.0%
!! TGCAGGGTATTGATATTTGG+TGG - chr5_2:28356762-28356781 Msa0766540:CDS 40.0%
!! GGTCTCTTCTAGTTCAACTA+AGG + chr5_2:28356929-28356948 None:intergenic 40.0%
GTGTTTAGATGAGATGACAC+AGG + chr5_2:28356950-28356969 None:intergenic 40.0%
! AGTGGGTTTGATGCATTTGT+AGG + chr5_2:28354895-28354914 None:intergenic 40.0%
TGGATAACAAAAGTTCCACG+TGG - chr5_2:28355003-28355022 Msa0766540:three_prime_UTR 40.0%
!! GACTATGGAAATTTTTGGGC+AGG + chr5_2:28355083-28355102 None:intergenic 40.0%
! CAATTTTGTGCTAGTGCTAG+TGG + chr5_2:28355364-28355383 None:intergenic 40.0%
CACTAGCACTAGCACAAAAT+TGG - chr5_2:28355362-28355381 Msa0766540:intron 40.0%
CTAGCACTAGCACAAAATTG+GGG - chr5_2:28355364-28355383 Msa0766540:intron 40.0%
TCCTTAAAACTGCATCCTCA+GGG + chr5_2:28355435-28355454 None:intergenic 40.0%
ATCCTTAAAACTGCATCCTC+AGG + chr5_2:28355436-28355455 None:intergenic 40.0%
TGTTGGAAACTTTGTCTTGG+AGG - chr5_2:28355494-28355513 Msa0766540:intron 40.0%
AGTTGCTTAACCAATGTCTG+AGG - chr5_2:28355883-28355902 Msa0766540:intron 40.0%
TAAATAGTGGCCTCAGACAT+TGG + chr5_2:28355896-28355915 None:intergenic 40.0%
TTCGTCCAAATTAGCTCATC+TGG - chr5_2:28356005-28356024 Msa0766540:intron 40.0%
TTGAGCCAGATGAGCTAATT+TGG + chr5_2:28356013-28356032 None:intergenic 40.0%
! ATATTTTTCCCCTCTCCAGA+TGG - chr5_2:28356630-28356649 Msa0766540:CDS 40.0%
!! AGCTGCAGGGTATTGATATT+TGG - chr5_2:28356759-28356778 Msa0766540:CDS 40.0%
!! TGCAGGGTATTGATATTTGG+TGG - chr5_2:28356762-28356781 Msa0766540:CDS 40.0%
!! GGTCTCTTCTAGTTCAACTA+AGG + chr5_2:28356929-28356948 None:intergenic 40.0%
GTGTTTAGATGAGATGACAC+AGG + chr5_2:28356950-28356969 None:intergenic 40.0%
ATGGAGTAGTGTAGTGGCAT+GGG + chr5_2:28355194-28355213 None:intergenic 45.0%
CCTTAAAACTGCATCCTCAG+GGG + chr5_2:28355434-28355453 None:intergenic 45.0%
TTTGCCTGAAAATCGTCGCA+AGG - chr5_2:28355585-28355604 Msa0766540:intron 45.0%
! TACTCCTTGCGACGATTTTC+AGG + chr5_2:28355592-28355611 None:intergenic 45.0%
AACCAGTGTCATCACTGCAA+TGG - chr5_2:28355761-28355780 Msa0766540:intron 45.0%
AACCATTGCAGTGATGACAC+TGG + chr5_2:28355766-28355785 None:intergenic 45.0%
ATAACGATCCATCTGGAGAG+GGG + chr5_2:28356641-28356660 None:intergenic 45.0%
CATAACGATCCATCTGGAGA+GGG + chr5_2:28356642-28356661 None:intergenic 45.0%
ACATAACGATCCATCTGGAG+AGG + chr5_2:28356643-28356662 None:intergenic 45.0%
TCCAGATGGATCGTTATGTG+CGG - chr5_2:28356644-28356663 Msa0766540:CDS 45.0%
TAGTGCAAAGTTGAAGCTGC+AGG - chr5_2:28356745-28356764 Msa0766540:CDS 45.0%
AGTGCAAAGTTGAAGCTGCA+GGG - chr5_2:28356746-28356765 Msa0766540:CDS 45.0%
ATGGAGTAGTGTAGTGGCAT+GGG + chr5_2:28355194-28355213 None:intergenic 45.0%
CCTTAAAACTGCATCCTCAG+GGG + chr5_2:28355434-28355453 None:intergenic 45.0%
TTTGCCTGAAAATCGTCGCA+AGG - chr5_2:28355585-28355604 Msa0766540:intron 45.0%
! TACTCCTTGCGACGATTTTC+AGG + chr5_2:28355592-28355611 None:intergenic 45.0%
AACCAGTGTCATCACTGCAA+TGG - chr5_2:28355761-28355780 Msa0766540:intron 45.0%
AACCATTGCAGTGATGACAC+TGG + chr5_2:28355766-28355785 None:intergenic 45.0%
ATAACGATCCATCTGGAGAG+GGG + chr5_2:28356641-28356660 None:intergenic 45.0%
CATAACGATCCATCTGGAGA+GGG + chr5_2:28356642-28356661 None:intergenic 45.0%
ACATAACGATCCATCTGGAG+AGG + chr5_2:28356643-28356662 None:intergenic 45.0%
TCCAGATGGATCGTTATGTG+CGG - chr5_2:28356644-28356663 Msa0766540:CDS 45.0%
TAGTGCAAAGTTGAAGCTGC+AGG - chr5_2:28356745-28356764 Msa0766540:CDS 45.0%
AGTGCAAAGTTGAAGCTGCA+GGG - chr5_2:28356746-28356765 Msa0766540:CDS 45.0%
GGTCTTGAGATTATGCCACG+TGG + chr5_2:28355021-28355040 None:intergenic 50.0%
CATGGAGTAGTGTAGTGGCA+TGG + chr5_2:28355195-28355214 None:intergenic 50.0%
!! TGTGTTTGGTGATGTGGGCA+TGG + chr5_2:28355213-28355232 None:intergenic 50.0%
! CCCCTGAGGATGCAGTTTTA+AGG - chr5_2:28355431-28355450 Msa0766540:intron 50.0%
ACACGACATGTGTCCGACAT+CGG - chr5_2:28356380-28356399 Msa0766540:CDS 50.0%
GATTAGGCGTGTTCCGATGT+CGG + chr5_2:28356396-28356415 None:intergenic 50.0%
TCCGCACATAACGATCCATC+TGG + chr5_2:28356648-28356667 None:intergenic 50.0%
TCGTTATGTGCGGACACCAA+AGG - chr5_2:28356654-28356673 Msa0766540:CDS 50.0%
GGTCTTGAGATTATGCCACG+TGG + chr5_2:28355021-28355040 None:intergenic 50.0%
CATGGAGTAGTGTAGTGGCA+TGG + chr5_2:28355195-28355214 None:intergenic 50.0%
!! TGTGTTTGGTGATGTGGGCA+TGG + chr5_2:28355213-28355232 None:intergenic 50.0%
! CCCCTGAGGATGCAGTTTTA+AGG - chr5_2:28355431-28355450 Msa0766540:intron 50.0%
ACACGACATGTGTCCGACAT+CGG - chr5_2:28356380-28356399 Msa0766540:CDS 50.0%
GATTAGGCGTGTTCCGATGT+CGG + chr5_2:28356396-28356415 None:intergenic 50.0%
TCCGCACATAACGATCCATC+TGG + chr5_2:28356648-28356667 None:intergenic 50.0%
TCGTTATGTGCGGACACCAA+AGG - chr5_2:28356654-28356673 Msa0766540:CDS 50.0%
TGTAGTGGCATGGGTGAAGC+TGG + chr5_2:28355185-28355204 None:intergenic 55.0%
GTGGGCATGGAGTAGTGTAG+TGG + chr5_2:28355200-28355219 None:intergenic 55.0%
TGTAGTGGCATGGGTGAAGC+TGG + chr5_2:28355185-28355204 None:intergenic 55.0%
GTGGGCATGGAGTAGTGTAG+TGG + chr5_2:28355200-28355219 None:intergenic 55.0%
GGCATGGGTGAAGCTGGACA+TGG + chr5_2:28355179-28355198 None:intergenic 60.0%
GGCATGGGTGAAGCTGGACA+TGG + chr5_2:28355179-28355198 None:intergenic 60.0%
TATGCCAGGGCTGTCCCCTG+AGG - chr5_2:28355417-28355436 Msa0766540:intron 65.0%
TATGCCAGGGCTGTCCCCTG+AGG - chr5_2:28355417-28355436 Msa0766540:intron 65.0%
GCATCCTCAGGGGACAGCCC+TGG + chr5_2:28355424-28355443 None:intergenic 70.0%
GCATCCTCAGGGGACAGCCC+TGG + chr5_2:28355424-28355443 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 28354890 28357109 28354890 ID=Msa0766540;Name=Msa0766540
chr5_2 mRNA 28354890 28357109 28354890 ID=Msa0766540-mRNA-1;Parent=Msa0766540;Name=Msa0766540-mRNA-1;_AED=0.00;_eAED=0.00;_QI=288|1|1|1|1|1|2|362|190
chr5_2 exon 28354890 28355350 28354890 ID=Msa0766540-mRNA-1:exon:10934;Parent=Msa0766540-mRNA-1
chr5_2 exon 28356348 28357109 28356348 ID=Msa0766540-mRNA-1:exon:10933;Parent=Msa0766540-mRNA-1
chr5_2 five_prime_UTR 28356822 28357109 28356822 ID=Msa0766540-mRNA-1:five_prime_utr;Parent=Msa0766540-mRNA-1
chr5_2 CDS 28356348 28356821 28356348 ID=Msa0766540-mRNA-1:cds;Parent=Msa0766540-mRNA-1
chr5_2 CDS 28355252 28355350 28355252 ID=Msa0766540-mRNA-1:cds;Parent=Msa0766540-mRNA-1
chr5_2 three_prime_UTR 28354890 28355251 28354890 ID=Msa0766540-mRNA-1:three_prime_utr;Parent=Msa0766540-mRNA-1
Gene Sequence

>Msa0766540

ATGTCCAGCTTCACCCATGCCACTACACTACTCCATGCCCACATCACCAAACACAAAAACACTTCAAACAACAACATTAACAACAACTCTTTATCTTCTAAACAAAATGTGTCTAATAGAAGAAATTTAGTTTCAACATTTCTAGCAACATCAATGGTTGGAGTAGTACATGTTGCAACAACACCACTAGCACTAGCACAAAATTGGGGCACACGTTCTTTTATGAAAGAACATTTTTTTATGCCAGGGCTGTCCCCTGAGGATGCAGTTTTAAGGATAAAACAAACAGCTGAAGGGTTACATAATCTTAGGGAAATGTTGGAAACTTTGTCTTGGAGGTATGTTATGTTTTATATAAGATTGAAACAGAATTATCTTGAACAGGATTTGAAAAATGCTATCACTACTTTGCCTGAAAATCGTCGCAAGGAGTATGTTAAAACTGCTAATGAGTTGGTTGATAATTTGACTGAGATGGATCGTTATGTGCGGACACCAAAGGTATATGAATCATACCTATACTACGAGAAGACATTGAAATCAATAGATGAACTTGTGGCTCTGTTAGCATAG

Protein sequence

>Msa0766540

MSSFTHATTLLHAHITKHKNTSNNNINNNSLSSKQNVSNRRNLVSTFLATSMVGVVHVATTPLALAQNWGTRSFMKEHFFMPGLSPEDAVLRIKQTAEGLHNLREMLETLSWRYVMFYIRLKQNYLEQDLKNAITTLPENRRKEYVKTANELVDNLTEMDRYVRTPKVYESYLYYEKTLKSIDELVALLA*