AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0066990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0066990 MtrunA17_Chr1g0169121 89.271 494 7 3 1 494 1 448 0.0 891
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0066990 AT1G04620.1 77.682 466 61 2 29 494 40 462 0.0 760

Find 131 sgRNAs with CRISPR-Local

Find 476 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAAGTTTCCAACAAATTT+TGG 0.053248 1_2:+31294975 None:intergenic
GATTGCATTTATACTAAATT+TGG 0.163675 1_2:-31294955 Msa0066990:intron
TGTGGAGCACCACTTGAATT+TGG 0.214139 1_2:-31297315 Msa0066990:CDS
TCATAATGGAGAACTGTTTC+AGG 0.214817 1_2:+31297112 None:intergenic
ATGCTGATTCCGGAATATTT+TGG 0.236876 1_2:+31295658 None:intergenic
GGACTTGGTCGTTGGATATA+TGG 0.270258 1_2:-31295686 Msa0066990:CDS
GCTGATGATAAAGCTAAATT+TGG 0.271815 1_2:-31295278 Msa0066990:intron
CTGTCTCCCAGCAAATGATT+TGG 0.288560 1_2:-31296064 Msa0066990:CDS
TTAGCAGCCATCACTTCTTC+TGG 0.292447 1_2:+31298682 None:intergenic
TAAGAATGCTTGTGCTTTCT+TGG 0.303722 1_2:-31301388 Msa0066990:CDS
CAACAAGCGCAAGGGTATTA+AGG 0.316182 1_2:+31298632 None:intergenic
TTTCATCATTGACAGGCTTC+AGG 0.347594 1_2:-31297490 Msa0066990:intron
GCAGGTTCACTTGAAGCATT+TGG 0.351862 1_2:-31296197 Msa0066990:intron
CAGCCTGCCCCAAAATTTGT+TGG 0.382744 1_2:-31294984 Msa0066990:CDS
AATCTTGCATAAACTCATAA+TGG 0.386967 1_2:+31297098 None:intergenic
TATAAGACGTTTCGTTCAAA+TGG 0.390023 1_2:-31298479 Msa0066990:CDS
GGAACTATTTATACGTAAAT+CGG 0.390024 1_2:-31294772 Msa0066990:CDS
CCCTAAGTAGGTCTCATCTA+AGG 0.390531 1_2:+31300135 None:intergenic
CTCCCTCTACCATGAACAAC+AGG 0.400077 1_2:+31300169 None:intergenic
TTTCTGTGGTGTAGGTTGCC+AGG 0.407229 1_2:-31297452 Msa0066990:CDS
ACATCAACCAAATCATTTGC+TGG 0.410174 1_2:+31296057 None:intergenic
CAACCTTGCTAAAACAGGTC+TGG 0.413067 1_2:+31298794 None:intergenic
AACTTCAGTCGGAGAAGAAA+AGG 0.413432 1_2:+31300662 None:intergenic
AAAAGTTCATACAACTGTAT+AGG 0.414289 1_2:+31294386 None:intergenic
AAATTGGAACCTGTTGTTCA+TGG 0.417037 1_2:-31300178 Msa0066990:CDS
AACTATCAGTAATAAGCTTT+AGG 0.417887 1_2:-31294409 Msa0066990:three_prime_UTR
TAGGTTCCACCTGGTGGGAT+AGG 0.430729 1_2:+31301471 None:intergenic
ATGTTGTGTCATGCTGATTC+CGG 0.431412 1_2:+31295648 None:intergenic
AAGAATGCTTGTGCTTTCTT+GGG 0.435235 1_2:-31301387 Msa0066990:CDS
GACTTGGTCGTTGGATATAT+GGG 0.435737 1_2:-31295685 Msa0066990:CDS
TTTGCTGGGAGACAGAAATA+AGG 0.436430 1_2:+31296072 None:intergenic
AGAACCATCCATTTCAAAAC+AGG 0.438713 1_2:-31301514 Msa0066990:CDS
GCAATTGAAATGCTTAAGTC+AGG 0.440866 1_2:-31298985 Msa0066990:CDS
CGCTTGATTATCATACCATT+CGG 0.443793 1_2:-31294793 Msa0066990:CDS
ATGGGCGTGCCAAAATATTC+CGG 0.444128 1_2:-31295667 Msa0066990:CDS
GTTTGACAAAATGTATATAA+CGG 0.445252 1_2:+31294307 None:intergenic
CCTTAGATGAGACCTACTTA+GGG 0.447504 1_2:-31300135 Msa0066990:CDS
ATTTATACGTAAATCGGTTG+TGG 0.447846 1_2:-31294766 Msa0066990:CDS
TTTATACGTAAATCGGTTGT+GGG 0.448312 1_2:-31294765 Msa0066990:CDS
TTATTGCTCCGTCTTGCTAC+AGG 0.450685 1_2:-31296035 Msa0066990:intron
CAATGGAACCAGGGAAGGAC+TGG 0.454699 1_2:-31297164 Msa0066990:CDS
CAAAACAGGACTGGAGGAAA+AGG 0.455934 1_2:-31301500 Msa0066990:CDS
GATGCCAACCTTGCTAAAAC+AGG 0.462394 1_2:+31298789 None:intergenic
GCTTGTGCTTTCTTGGGAGA+TGG 0.464642 1_2:-31301381 Msa0066990:CDS
GTCAAAACTTTGTCTCTAGC+TGG 0.466618 1_2:-31294450 Msa0066990:three_prime_UTR
ATTTGTCATGGAGACTGTTA+AGG 0.468608 1_2:-31295300 Msa0066990:CDS
GCATTGATCTTTAGCTGGAT+AGG 0.468662 1_2:+31301452 None:intergenic
GGCACACCTATGCCACTGAT+TGG 0.471309 1_2:+31294536 None:intergenic
AAGCACGAATGGAGAGAGAA+AGG 0.476898 1_2:+31301788 None:intergenic
CTATGTTCAGGTTGGTCCGA+AGG 0.480165 1_2:-31294837 Msa0066990:intron
AGCACGAATGGAGAGAGAAA+GGG 0.480170 1_2:+31301789 None:intergenic
AGTCAGAATATACCTTCGAC+AGG 0.483412 1_2:+31300076 None:intergenic
TGAGTTTATGCAAGATTACA+AGG 0.484461 1_2:-31297092 Msa0066990:intron
CGTTTCGTTCAAATGGATGA+AGG 0.484800 1_2:-31298472 Msa0066990:CDS
CTGGGAGCAAATCTGTCGTC+AGG 0.485421 1_2:+31298813 None:intergenic
AAACTTATCCAGTCCTTCCC+TGG 0.487043 1_2:+31297156 None:intergenic
TAAATGGTTGCAGGGCAGAT+AGG 0.488436 1_2:-31294659 Msa0066990:intron
CGGTTTATACTTTATAGTCA+TGG 0.488613 1_2:+31294327 None:intergenic
ACCTTAGATGAGACCTACTT+AGG 0.488804 1_2:-31300136 Msa0066990:CDS
AACCTTGCTAAAACAGGTCT+GGG 0.489463 1_2:+31298795 None:intergenic
TAACTTACTGAATTAACTGT+TGG 0.494896 1_2:+31295404 None:intergenic
GAACCTGTTGTTCATGGTAG+AGG 0.503654 1_2:-31300172 Msa0066990:CDS
CTTAAGCATTTCAATTGCAA+TGG 0.506266 1_2:+31298990 None:intergenic
TGACTGCATTGATCTTTAGC+TGG 0.510002 1_2:+31301447 None:intergenic
TTCATAGGAGCTCAATGGAC+TGG 0.514762 1_2:-31299024 Msa0066990:intron
CATAATGGAGAACTGTTTCA+GGG 0.520042 1_2:+31297113 None:intergenic
AGCGCAAGGGTATTAAGGTT+AGG 0.527839 1_2:+31298637 None:intergenic
GCTGGATAGGTTCCACCTGG+TGG 0.528907 1_2:+31301465 None:intergenic
AGTTTACAAAGTTGCTAACA+AGG 0.529465 1_2:-31300627 Msa0066990:intron
ACTTCAGTCGGAGAAGAAAA+GGG 0.531301 1_2:+31300663 None:intergenic
AGAAGAAGAAGAAGCACGAA+TGG 0.533694 1_2:+31301777 None:intergenic
TTAACAGTCTCCATGACAAA+TGG 0.534122 1_2:+31295302 None:intergenic
TAATACCCTTGCGCTTGTTG+AGG 0.535155 1_2:-31298629 Msa0066990:intron
CATCAACCAAATCATTTGCT+GGG 0.539146 1_2:+31296058 None:intergenic
ATGAGGAACTTCTGTATGCT+CGG 0.539703 1_2:-31300108 Msa0066990:CDS
ATCCACAATATATTACTGTC+AGG 0.540157 1_2:-31295627 Msa0066990:intron
CGTGCAAATTCAATGCCCTT+CGG 0.540487 1_2:+31294821 None:intergenic
CGACAGTGGACAATGGAACC+AGG 0.543521 1_2:-31297174 Msa0066990:intron
CATGCTCCAATCAGTGGCAT+AGG 0.547046 1_2:-31294542 Msa0066990:three_prime_UTR
TATGTTCAGGTTGGTCCGAA+GGG 0.548543 1_2:-31294836 Msa0066990:intron
GAAGAAGTGATGGCTGCTAA+AGG 0.556856 1_2:-31298679 Msa0066990:CDS
GGTGTAGGTTGCCAGGTCCA+AGG 0.559413 1_2:-31297445 Msa0066990:intron
TACCTGACAGTAATATATTG+TGG 0.560089 1_2:+31295625 None:intergenic
AGCGAACATAAAACTTCAGT+CGG 0.561806 1_2:+31300651 None:intergenic
TTCATATGCTAAGAAAATTG+TGG 0.562861 1_2:-31294628 Msa0066990:CDS
CAGTAGTGGTACCTTGGACC+TGG 0.564696 1_2:+31297434 None:intergenic
AGGTCAAAGCCTATCCCACC+AGG 0.574966 1_2:-31301480 Msa0066990:CDS
TCTTCTTCTTCTTCATCACA+AGG 0.576579 1_2:-31301766 Msa0066990:intron
CATCCATTTCAAAACAGGAC+TGG 0.578368 1_2:-31301509 Msa0066990:CDS
GCACGAATGGAGAGAGAAAG+GGG 0.578714 1_2:+31301790 None:intergenic
TCTCAGAGAAGTGATTCTAA+AGG 0.579377 1_2:-31294569 Msa0066990:exon
AATTGCAGCATTAAGATCTG+TGG 0.579563 1_2:-31297333 Msa0066990:intron
CACAAACCTCAACAAGCGCA+AGG 0.579807 1_2:+31298623 None:intergenic
AACCTGTTGTTCATGGTAGA+GGG 0.580141 1_2:-31300171 Msa0066990:CDS
TGAAATGCTTAAGTCAGGCA+TGG 0.590315 1_2:-31298980 Msa0066990:CDS
TACGTATAAATAGTTCCGAA+TGG 0.593464 1_2:+31294778 None:intergenic
TTAGCTGGATAGGTTCCACC+TGG 0.595432 1_2:+31301462 None:intergenic
AAGCTGTCATTTGTGTACAA+AGG 0.596616 1_2:-31298954 Msa0066990:intron
TTAAGGTTAGGAGACAATGT+TGG 0.598276 1_2:+31298649 None:intergenic
TTATACGTAAATCGGTTGTG+GGG 0.598934 1_2:-31294764 Msa0066990:CDS
CCTTATTCGACAGTGGACAA+TGG 0.600320 1_2:-31297181 Msa0066990:intron
CTGGATAGGTTCCACCTGGT+GGG 0.602036 1_2:+31301466 None:intergenic
CAGGACACCAGAAGAAGTGA+TGG 0.602250 1_2:-31298689 Msa0066990:CDS
GACCTACTTAGGGGTCTATG+AGG 0.605671 1_2:-31300125 Msa0066990:CDS
GGATTACATGCTCCAATCAG+TGG 0.605996 1_2:-31294548 Msa0066990:three_prime_UTR
GGATAGGCGACCATTTGTCA+TGG 0.606587 1_2:-31295312 Msa0066990:CDS
ACAAATAACCTGTAGCAAGA+CGG 0.610362 1_2:+31296027 None:intergenic
TTTGGACGGTCGTATTGAAG+AGG 0.610876 1_2:-31296179 Msa0066990:intron
GTTCACTTGAAGCATTTGGA+CGG 0.611001 1_2:-31296193 Msa0066990:CDS
GTGGACAATGGAACCAGGGA+AGG 0.613783 1_2:-31297169 Msa0066990:CDS
TTCATGGTACACAATACAAG+GGG 0.613886 1_2:-31294363 Msa0066990:three_prime_UTR
TATACGTAAATCGGTTGTGG+GGG 0.620574 1_2:-31294763 Msa0066990:CDS
CCATTTCAAAACAGGACTGG+AGG 0.622041 1_2:-31301506 Msa0066990:CDS
TTTCATGGTACACAATACAA+GGG 0.631514 1_2:-31294364 Msa0066990:three_prime_UTR
AGCGAACACCGATGATGATG+TGG 0.634417 1_2:+31301866 None:intergenic
TTACTATGTTGTGAATTGTG+TGG 0.635158 1_2:-31301900 Msa0066990:five_prime_UTR
AGAGCTTATCCAAATTCAAG+TGG 0.635776 1_2:+31297306 None:intergenic
CGGAAACTTAACCCTGTCGA+AGG 0.641199 1_2:-31300088 Msa0066990:intron
TTCCTCATAGACCCCTAAGT+AGG 0.644398 1_2:+31300123 None:intergenic
ACAAACCTCAACAAGCGCAA+GGG 0.656935 1_2:+31298624 None:intergenic
AAAGATCAATGCAGTCAGTG+TGG 0.664762 1_2:-31301441 Msa0066990:CDS
GACAGTGGACAATGGAACCA+GGG 0.676637 1_2:-31297173 Msa0066990:intron
GTCAGAATATACCTTCGACA+GGG 0.677868 1_2:+31300077 None:intergenic
ATAATGGAGAACTGTTTCAG+GGG 0.681913 1_2:+31297114 None:intergenic
GCTTAGCACACTAAGCTCAG+TGG 0.698415 1_2:+31301835 None:intergenic
CCCTAGACAGAACCGCCGTG+TGG 0.700664 1_2:+31298442 None:intergenic
CTTAGATGAGACCTACTTAG+GGG 0.700742 1_2:-31300134 Msa0066990:CDS
TCAAAGCCTATCCCACCAGG+TGG 0.703549 1_2:-31301477 Msa0066990:CDS
TGAAACGACAGGAATGAACG+TGG 0.713648 1_2:-31295470 Msa0066990:intron
GATGAAGGTTACAATCCACA+CGG 0.727982 1_2:-31298457 Msa0066990:CDS
GAAGGTTACAATCCACACGG+CGG 0.812902 1_2:-31298454 Msa0066990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAATA+CGG - chr1_2:31295186-31295205 Msa0066990:intron 0.0%
!!! GTTTTTTTTTTTTTTTTTGA+GGG + chr1_2:31294331-31294350 None:intergenic 10.0%
!!! TGTTTTTTTTTTTTTTTTTG+AGG + chr1_2:31294332-31294351 None:intergenic 10.0%
!! AAATCATTATGTTATATGAA+AGG - chr1_2:31295069-31295088 Msa0066990:intron 15.0%
!!! GTCTCTAATTTTAATTTTTT+AGG + chr1_2:31295461-31295480 None:intergenic 15.0%
!! TAATGCTTATAAGAATATTA+AGG + chr1_2:31295974-31295993 None:intergenic 15.0%
!! ATTTAGATAATTGAATAGTT+AGG - chr1_2:31296488-31296507 Msa0066990:intron 15.0%
!! TTATACATTTATGTATATGA+TGG - chr1_2:31297171-31297190 Msa0066990:CDS 15.0%
!! TATACATTTATGTATATGAT+GGG - chr1_2:31297172-31297191 Msa0066990:intron 15.0%
!! ATAAATTTATCTATTCATTC+AGG - chr1_2:31297762-31297781 Msa0066990:intron 15.0%
!! GTAATATATTATGTTATAAC+TGG + chr1_2:31298601-31298620 None:intergenic 15.0%
!!! ATTATTTTAAATGAATCAGT+TGG + chr1_2:31299857-31299876 None:intergenic 15.0%
!!! AACTGATTCATTTAAAATAA+TGG - chr1_2:31299856-31299875 Msa0066990:intron 15.0%
!!! ATATTTTCTTTTTGATGAAA+TGG - chr1_2:31301124-31301143 Msa0066990:intron 15.0%
!!! AATATTTGATTATTTTTCCT+CGG - chr1_2:31301235-31301254 Msa0066990:intron 15.0%
!! TTATATTGTTGAAACATAAA+TGG - chr1_2:31301599-31301618 Msa0066990:intron 15.0%
!! TTATACAAACCAAAATTGAT+TGG - chr1_2:31296045-31296064 Msa0066990:CDS 20.0%
!!! CATTTAAAATCATTCTTTTC+TGG - chr1_2:31296366-31296385 Msa0066990:intron 20.0%
!! TTGAAATAATGCTTCTTAAA+AGG + chr1_2:31296423-31296442 None:intergenic 20.0%
!!! TTTAAGAAGCATTATTTCAA+TGG - chr1_2:31296423-31296442 Msa0066990:intron 20.0%
!! ACTTATCATTTGAAAGAATA+TGG - chr1_2:31296536-31296555 Msa0066990:intron 20.0%
!! CTTATCATTTGAAAGAATAT+GGG - chr1_2:31296537-31296556 Msa0066990:intron 20.0%
!! CTATGATCCTAAATAAATTT+AGG + chr1_2:31296681-31296700 None:intergenic 20.0%
!!! AATAATCTACATGTTTTGAT+TGG - chr1_2:31297351-31297370 Msa0066990:intron 20.0%
!! AAAGAAAAACATTAGAAACA+TGG + chr1_2:31297380-31297399 None:intergenic 20.0%
!! TTAGTTATCTTTCACTATAT+AGG - chr1_2:31297535-31297554 Msa0066990:intron 20.0%
!! TTAAAATACTTCATTTCTTC+AGG - chr1_2:31297566-31297585 Msa0066990:intron 20.0%
!!! ATTCTTTGTCATGTTTTTTT+AGG + chr1_2:31298228-31298247 None:intergenic 20.0%
!! ATTAAATGTAAGTGTAAAAC+TGG - chr1_2:31298677-31298696 Msa0066990:CDS 20.0%
!! AGTCATAGAATGAATATAAA+AGG + chr1_2:31298756-31298775 None:intergenic 20.0%
!! TTAAATGAACTAATTCAAAC+AGG + chr1_2:31299239-31299258 None:intergenic 20.0%
!! AAAAAGTAGAAAACAACTTA+TGG + chr1_2:31299337-31299356 None:intergenic 20.0%
!!! TATTTTCTCAAGAGAAAAAA+GGG - chr1_2:31299593-31299612 Msa0066990:intron 20.0%
!!! TTTTAAATTTTGACTTGAAC+AGG - chr1_2:31300177-31300196 Msa0066990:CDS 20.0%
!!! TTTTATCATGAAAAAACTGA+TGG + chr1_2:31300534-31300553 None:intergenic 20.0%
!! AAATAGAGAAAAGATACTTA+AGG + chr1_2:31301199-31301218 None:intergenic 20.0%
!! GATTGCATTTATACTAAATT+TGG - chr1_2:31301319-31301338 Msa0066990:intron 20.0%
!!! TTTTTTTCTGTTTTGTTTCT+TGG - chr1_2:31301405-31301424 Msa0066990:CDS 20.0%
!! GTTTGACAAAATGTATATAA+CGG + chr1_2:31301970-31301989 None:intergenic 20.0%
! ATTATTTACTTCATCGATGT+CGG + chr1_2:31294602-31294621 None:intergenic 25.0%
! ATATGAGAAAATATAAGCGA+AGG + chr1_2:31294716-31294735 None:intergenic 25.0%
! AGCATCACTCATAAAATAAA+AGG + chr1_2:31294949-31294968 None:intergenic 25.0%
!!! TCCTACTATGTTTTTACATT+TGG + chr1_2:31295525-31295544 None:intergenic 25.0%
! AACTATTTGATGAGATAATG+TGG + chr1_2:31295706-31295725 None:intergenic 25.0%
!! ATAAAGAGTCCAATCAATTT+TGG + chr1_2:31296057-31296076 None:intergenic 25.0%
!!! TCCTTTTTTGTTTCAGAAAT+TGG - chr1_2:31296080-31296099 Msa0066990:intron 25.0%
!!! TCCAATTTCTGAAACAAAAA+AGG + chr1_2:31296084-31296103 None:intergenic 25.0%
! TTCAAACTATCACTTTGTTA+TGG - chr1_2:31296332-31296351 Msa0066990:intron 25.0%
!!! ATCATTCTTTTCTGGTTTTT+TGG - chr1_2:31296374-31296393 Msa0066990:intron 25.0%
! ATTATCTAAATACCCACAAA+GGG + chr1_2:31296479-31296498 None:intergenic 25.0%
! AATTATCTAAATACCCACAA+AGG + chr1_2:31296480-31296499 None:intergenic 25.0%
! TGATCCTAAATAAATTTAGG+AGG + chr1_2:31296678-31296697 None:intergenic 25.0%
! ATATCAATGAAACATTTCAG+TGG + chr1_2:31296714-31296733 None:intergenic 25.0%
! GTTTCCTTTAGTATTTAGTT+TGG - chr1_2:31296744-31296763 Msa0066990:intron 25.0%
! TACTCCAAACTAAATACTAA+AGG + chr1_2:31296751-31296770 None:intergenic 25.0%
!!! TTAGTATTTAGTTTGGAGTA+AGG - chr1_2:31296751-31296770 Msa0066990:intron 25.0%
!! TTATGTTGTTTATCCAAACT+AGG + chr1_2:31296798-31296817 None:intergenic 25.0%
!! GTAAAATTCGTTCTTTTCAT+AGG - chr1_2:31297235-31297254 Msa0066990:intron 25.0%
! TTCATATTATCTCTAAGTGA+AGG + chr1_2:31298062-31298081 None:intergenic 25.0%
! CATTGAATCAGTAAAATCTA+CGG - chr1_2:31298153-31298172 Msa0066990:intron 25.0%
! ATTGAATCAGTAAAATCTAC+GGG - chr1_2:31298154-31298173 Msa0066990:intron 25.0%
!!! CAATGAACAACTTTTTTTGA+AGG + chr1_2:31298349-31298368 None:intergenic 25.0%
!!! AGTTGTTCATTGTTTTTATC+TGG - chr1_2:31298357-31298376 Msa0066990:intron 25.0%
! TCTGAACCAAAAAATAAAAC+TGG - chr1_2:31298523-31298542 Msa0066990:intron 25.0%
!!! TCTCTTCCAGTTTTATTTTT+TGG + chr1_2:31298532-31298551 None:intergenic 25.0%
! GTGTAAAATAACTCAATCAT+TGG + chr1_2:31298572-31298591 None:intergenic 25.0%
!!! AATTACTGAATGAGCTTTTT+TGG + chr1_2:31298623-31298642 None:intergenic 25.0%
!! ACAATGTCTGAAATAGAAAA+TGG + chr1_2:31298724-31298743 None:intergenic 25.0%
!! TTTGAATTTTCATCATTGAC+AGG - chr1_2:31298777-31298796 Msa0066990:intron 25.0%
!!! TTGCAATGTTTTGATTATGT+TGG - chr1_2:31299048-31299067 Msa0066990:intron 25.0%
! AATCTTGCATAAACTCATAA+TGG + chr1_2:31299179-31299198 None:intergenic 25.0%
!! CTGAAAACTCATGTTTTATA+AGG - chr1_2:31299212-31299231 Msa0066990:intron 25.0%
! ACTAAGTGCTTATAGTATAA+GGG + chr1_2:31299475-31299494 None:intergenic 25.0%
! AACTAAGTGCTTATAGTATA+AGG + chr1_2:31299476-31299495 None:intergenic 25.0%
! ATGTATTAAGAAGATGAGAT+GGG - chr1_2:31299570-31299589 Msa0066990:intron 25.0%
!! GTATTTTCTCAAGAGAAAAA+AGG - chr1_2:31299592-31299611 Msa0066990:intron 25.0%
! TTAGTTAGAGTAGATTCAAT+TGG - chr1_2:31299647-31299666 Msa0066990:intron 25.0%
! TAGATTCAATTGGTTAAATG+TGG - chr1_2:31299657-31299676 Msa0066990:intron 25.0%
!! TAAAATAACATTTTGCGAAG+AGG - chr1_2:31299744-31299763 Msa0066990:intron 25.0%
! TCAGGCAATGTAATATAAAT+TGG - chr1_2:31299818-31299837 Msa0066990:intron 25.0%
! CCATGGAATAGTAAAATAAA+GGG + chr1_2:31300131-31300150 None:intergenic 25.0%
! TCCATGGAATAGTAAAATAA+AGG + chr1_2:31300132-31300151 None:intergenic 25.0%
!! TATTTTTCTTTGTGAATCCA+TGG + chr1_2:31300148-31300167 None:intergenic 25.0%
! ATTAGTGCAACAAAAAATGA+AGG + chr1_2:31300328-31300347 None:intergenic 25.0%
!!! TCATTTTTTGTTGCACTAAT+TGG - chr1_2:31300328-31300347 Msa0066990:intron 25.0%
! AGAATGAACAATTTGTATAC+AGG + chr1_2:31300501-31300520 None:intergenic 25.0%
!! AAAACTATCGCTTTATTAGA+TGG - chr1_2:31300552-31300571 Msa0066990:intron 25.0%
!! TTAGATGGTGTAATATTTTC+AGG - chr1_2:31300567-31300586 Msa0066990:intron 25.0%
! AAATGTTTCTTGAAGGAATA+TGG - chr1_2:31300747-31300766 Msa0066990:intron 25.0%
! TAACTTACTGAATTAACTGT+TGG + chr1_2:31300873-31300892 None:intergenic 25.0%
! TGATAAAGCTAAATTTGGTA+TGG - chr1_2:31301001-31301020 Msa0066990:intron 25.0%
!! TCAAGTTTCCAACAAATTTT+GGG + chr1_2:31301301-31301320 None:intergenic 25.0%
!! ATCAAGTTTCCAACAAATTT+TGG + chr1_2:31301302-31301321 None:intergenic 25.0%
! GGAACTATTTATACGTAAAT+CGG - chr1_2:31301502-31301521 Msa0066990:CDS 25.0%
!! ACAATTTTCTTAGCATATGA+AGG + chr1_2:31301647-31301666 None:intergenic 25.0%
! TTCATATGCTAAGAAAATTG+TGG - chr1_2:31301646-31301665 Msa0066990:intron 25.0%
!! AGACATAATGCATATTTTGT+AGG + chr1_2:31301762-31301781 None:intergenic 25.0%
! AACTATCAGTAATAAGCTTT+AGG - chr1_2:31301865-31301884 Msa0066990:five_prime_UTR 25.0%
! AAAAGTTCATACAACTGTAT+AGG + chr1_2:31301891-31301910 None:intergenic 25.0%
!!! AGTTGTATGAACTTTTTTCA+TGG - chr1_2:31301895-31301914 Msa0066990:five_prime_UTR 25.0%
TTACTATGTTGTGAATTGTG+TGG - chr1_2:31294374-31294393 Msa0066990:three_prime_UTR 30.0%
TGAGTAAAGTTTACATGACA+TGG + chr1_2:31294975-31294994 None:intergenic 30.0%
ACTTTACTCACTTATCAACT+TGG - chr1_2:31294985-31295004 Msa0066990:CDS 30.0%
TAACTGTTAGCATTATGTCA+GGG - chr1_2:31295111-31295130 Msa0066990:intron 30.0%
!! ATTATATTCGGTGCCAATTT+GGG - chr1_2:31295315-31295334 Msa0066990:CDS 30.0%
GCCAAATGTAAAAACATAGT+AGG - chr1_2:31295521-31295540 Msa0066990:intron 30.0%
AGTTTACAAAGTTGCTAACA+AGG - chr1_2:31295647-31295666 Msa0066990:CDS 30.0%
! GCTTATTGATTAATTCCACT+AGG + chr1_2:31295733-31295752 None:intergenic 30.0%
ATTAAGGCAATGCTTGAATT+AGG + chr1_2:31295958-31295977 None:intergenic 30.0%
!!! GTATAAACTCTGTCATTTTC+TGG + chr1_2:31296031-31296050 None:intergenic 30.0%
TACTCATATTCATTAGAACG+AGG + chr1_2:31296249-31296268 None:intergenic 30.0%
!!! ATTCTTTTCTGGTTTTTTGG+TGG - chr1_2:31296377-31296396 Msa0066990:intron 30.0%
!!! TTCTTTTCTGGTTTTTTGGT+GGG - chr1_2:31296378-31296397 Msa0066990:intron 30.0%
GCTTCTTAAAAGGTAAAGAA+TGG + chr1_2:31296413-31296432 None:intergenic 30.0%
TTATCTAAATACCCACAAAG+GGG + chr1_2:31296478-31296497 None:intergenic 30.0%
TAGTTAGGCTGACTATAAAT+AGG - chr1_2:31296503-31296522 Msa0066990:intron 30.0%
AGTTAGGCTGACTATAAATA+GGG - chr1_2:31296504-31296523 Msa0066990:intron 30.0%
TTTCCTGGTTTATAGAATAG+AGG + chr1_2:31296602-31296621 None:intergenic 30.0%
AAAGTATGATAGGAACAAAC+TGG + chr1_2:31296650-31296669 None:intergenic 30.0%
TTGTTCCTATCATACTTTGA+TGG - chr1_2:31296652-31296671 Msa0066990:intron 30.0%
ATGGCCTCCTAAATTTATTT+AGG - chr1_2:31296671-31296690 Msa0066990:intron 30.0%
!! GTTGTTTTCATATGCTATCA+TGG - chr1_2:31296905-31296924 Msa0066990:intron 30.0%
TGGAAACAACTTATAGCTTA+TGG - chr1_2:31296936-31296955 Msa0066990:intron 30.0%
TTAAATTCGTCAATGCAAAG+AGG - chr1_2:31297027-31297046 Msa0066990:intron 30.0%
TTAAGTTACAGTTAAGCTTC+TGG + chr1_2:31297076-31297095 None:intergenic 30.0%
CTTAAGCATTTCAATTGCAA+TGG + chr1_2:31297287-31297306 None:intergenic 30.0%
GACACATTCTCTAACAAAAA+GGG + chr1_2:31297680-31297699 None:intergenic 30.0%
TGACACATTCTCTAACAAAA+AGG + chr1_2:31297681-31297700 None:intergenic 30.0%
TATAAGACGTTTCGTTCAAA+TGG - chr1_2:31297795-31297814 Msa0066990:intron 30.0%
GGTATAATGTGAAACATGAT+AGG - chr1_2:31297869-31297888 Msa0066990:intron 30.0%
TAAACAAGCTATTATCTCCT+AGG + chr1_2:31298122-31298141 None:intergenic 30.0%
!!! CGTAGATTTTACTGATTCAA+TGG + chr1_2:31298155-31298174 None:intergenic 30.0%
!!! TTTTTTAGGATGCTTGCAAT+GGG + chr1_2:31298214-31298233 None:intergenic 30.0%
!!! TTTTTTTAGGATGCTTGCAA+TGG + chr1_2:31298215-31298234 None:intergenic 30.0%
! CAGTACAATGATCACATTTT+TGG - chr1_2:31298301-31298320 Msa0066990:intron 30.0%
!! GTTATTTCTCTGACTCTTAA+AGG - chr1_2:31298399-31298418 Msa0066990:intron 30.0%
AGGATCTGTAAACAAATTGT+TGG - chr1_2:31298425-31298444 Msa0066990:intron 30.0%
! TTGGATAAGCTCTATGTTTT+AGG - chr1_2:31298978-31298997 Msa0066990:CDS 30.0%
!! TATGTTTTAGGCACAAATTG+TGG - chr1_2:31298990-31299009 Msa0066990:CDS 30.0%
TGAGTTTATGCAAGATTACA+AGG - chr1_2:31299182-31299201 Msa0066990:intron 30.0%
TAGCTTACGGAAATTGTTTA+TGG - chr1_2:31299375-31299394 Msa0066990:intron 30.0%
TTTAGCTGTTTATCCAAACA+TGG - chr1_2:31299494-31299513 Msa0066990:intron 30.0%
GATGTATTAAGAAGATGAGA+TGG - chr1_2:31299569-31299588 Msa0066990:intron 30.0%
TGGTTAAATGTGGAGAAATA+AGG - chr1_2:31299667-31299686 Msa0066990:intron 30.0%
GGTTAAATGTGGAGAAATAA+GGG - chr1_2:31299668-31299687 Msa0066990:intron 30.0%
AGAAAATTGCATTGTGTGAA+TGG - chr1_2:31299707-31299726 Msa0066990:intron 30.0%
AATACATTGTGGTAGTACTA+AGG + chr1_2:31299796-31299815 None:intergenic 30.0%
TTAGTACTACCACAATGTAT+TGG - chr1_2:31299795-31299814 Msa0066990:intron 30.0%
TTCACAAATAGAAAAGTCTG+AGG + chr1_2:31299907-31299926 None:intergenic 30.0%
! TCAGACTTTTCTATTTGTGA+AGG - chr1_2:31299906-31299925 Msa0066990:intron 30.0%
! ACTTTTCTATTTGTGAAGGT+TGG - chr1_2:31299910-31299929 Msa0066990:intron 30.0%
! GCTTAAAACTGCAGATTTTT+GGG - chr1_2:31299956-31299975 Msa0066990:intron 30.0%
! ACAATGTTATTGATTGCGAA+TGG + chr1_2:31299998-31300017 None:intergenic 30.0%
AGTAAGGCAATATATAACCT+TGG + chr1_2:31300035-31300054 None:intergenic 30.0%
GTTTAAACAGAAACTGAGTA+AGG + chr1_2:31300051-31300070 None:intergenic 30.0%
!!! CCCTTTATTTTACTATTCCA+TGG - chr1_2:31300128-31300147 Msa0066990:CDS 30.0%
!!! AGCTGTTTTGACTATACAAA+TGG - chr1_2:31300373-31300392 Msa0066990:intron 30.0%
ATCCACAATATATTACTGTC+AGG - chr1_2:31300647-31300666 Msa0066990:CDS 30.0%
TACCTGACAGTAATATATTG+TGG + chr1_2:31300652-31300671 None:intergenic 30.0%
!!! TCTGTTTTTGCACTTTCTTT+TGG - chr1_2:31300695-31300714 Msa0066990:intron 30.0%
! TATTTTGTTCTTGAAACGAC+AGG - chr1_2:31300793-31300812 Msa0066990:intron 30.0%
!!! TATATCTGTTTTTTCGAGAG+AGG + chr1_2:31300919-31300938 None:intergenic 30.0%
! AACTTTTCGCTGTATAATTC+AGG - chr1_2:31300938-31300957 Msa0066990:intron 30.0%
! ACTTTTCGCTGTATAATTCA+GGG - chr1_2:31300939-31300958 Msa0066990:intron 30.0%
GCTGATGATAAAGCTAAATT+TGG - chr1_2:31300996-31301015 Msa0066990:intron 30.0%
AAAGCTAAATTTGGTATGGT+TGG - chr1_2:31301005-31301024 Msa0066990:intron 30.0%
! AAATGGATTTATCTCTCCAT+GGG - chr1_2:31301141-31301160 Msa0066990:intron 30.0%
! ATGTGAAGTTTAACTTACCA+TGG - chr1_2:31301167-31301186 Msa0066990:intron 30.0%
GATACTTAAGGTAAAAACCA+TGG + chr1_2:31301187-31301206 None:intergenic 30.0%
TGATTAAATCAGATATTCCG+AGG + chr1_2:31301255-31301274 None:intergenic 30.0%
TCGGAATATCTGATTTAATC+AGG - chr1_2:31301254-31301273 Msa0066990:intron 30.0%
TATCTGATTTAATCAGGAAG+AGG - chr1_2:31301260-31301279 Msa0066990:intron 30.0%
! CAAGTTTCCAACAAATTTTG+GGG + chr1_2:31301300-31301319 None:intergenic 30.0%
TACGTATAAATAGTTCCGAA+TGG + chr1_2:31301499-31301518 None:intergenic 30.0%
ATTTATACGTAAATCGGTTG+TGG - chr1_2:31301508-31301527 Msa0066990:CDS 30.0%
TTTATACGTAAATCGGTTGT+GGG - chr1_2:31301509-31301528 Msa0066990:CDS 30.0%
TTGAAACATAAATGGTTGCA+GGG - chr1_2:31301607-31301626 Msa0066990:intron 30.0%
GTGGATATGTACAACAAAAA+TGG - chr1_2:31301665-31301684 Msa0066990:intron 30.0%
! TTTTCATGGTACACAATACA+AGG - chr1_2:31301909-31301928 Msa0066990:intron 30.0%
TTTCATGGTACACAATACAA+GGG - chr1_2:31301910-31301929 Msa0066990:intron 30.0%
CGGTTTATACTTTATAGTCA+TGG + chr1_2:31301950-31301969 None:intergenic 30.0%
AGAAAAAGCCACATCATCAT+CGG - chr1_2:31294400-31294419 Msa0066990:three_prime_UTR 35.0%
TCTTCTTCTTCTTCATCACA+AGG - chr1_2:31294508-31294527 Msa0066990:three_prime_UTR 35.0%
GAGAAAATATAAGCGAAGGA+AGG + chr1_2:31294712-31294731 None:intergenic 35.0%
! TATCAGTCTCACCTTTCTTT+TGG - chr1_2:31294733-31294752 Msa0066990:intron 35.0%
AGAACCATCCATTTCAAAAC+AGG - chr1_2:31294760-31294779 Msa0066990:CDS 35.0%
TAAGAATGCTTGTGCTTTCT+TGG - chr1_2:31294886-31294905 Msa0066990:intron 35.0%
AAGAATGCTTGTGCTTTCTT+GGG - chr1_2:31294887-31294906 Msa0066990:intron 35.0%
GTAACTGTTAGCATTATGTC+AGG - chr1_2:31295110-31295129 Msa0066990:intron 35.0%
ATCCATCAAGTTATCCACTT+GGG - chr1_2:31295232-31295251 Msa0066990:intron 35.0%
GTCTCAGGTTCGATTATATT+CGG - chr1_2:31295303-31295322 Msa0066990:CDS 35.0%
!! GATTATATTCGGTGCCAATT+TGG - chr1_2:31295314-31295333 Msa0066990:CDS 35.0%
! TAGTACTGGGAATGAAATGA+AGG - chr1_2:31295391-31295410 Msa0066990:intron 35.0%
! AGTACTGGGAATGAAATGAA+GGG - chr1_2:31295392-31295411 Msa0066990:intron 35.0%
CTAACTCATCCTTACAACAT+CGG + chr1_2:31295501-31295520 None:intergenic 35.0%
AGCGAACATAAAACTTCAGT+CGG + chr1_2:31295626-31295645 None:intergenic 35.0%
! TGCTAACAAGGTGATGATTT+TGG - chr1_2:31295659-31295678 Msa0066990:CDS 35.0%
! GCTAACAAGGTGATGATTTT+GGG - chr1_2:31295660-31295679 Msa0066990:CDS 35.0%
! ATCAAATAGTTTGCACCTAG+TGG - chr1_2:31295715-31295734 Msa0066990:intron 35.0%
TTGTCGCAAAAAAGTCAATC+CGG + chr1_2:31295790-31295809 None:intergenic 35.0%
TATGTTGCAGAAAGCTGATA+AGG - chr1_2:31295850-31295869 Msa0066990:intron 35.0%
AAATTGGAACCTGTTGTTCA+TGG - chr1_2:31296096-31296115 Msa0066990:intron 35.0%
GTTTCTCTGATATGTGACAT+TGG - chr1_2:31296445-31296464 Msa0066990:intron 35.0%
! TTGAAAGAATATGGGCCTTT+TGG - chr1_2:31296545-31296564 Msa0066990:intron 35.0%
AAAAATGGGGAACAATTTCC+TGG + chr1_2:31296617-31296636 None:intergenic 35.0%
! TGGTCTTGCTACAAAAAATG+GGG + chr1_2:31296630-31296649 None:intergenic 35.0%
!! CTGGTCTTGCTACAAAAAAT+GGG + chr1_2:31296631-31296650 None:intergenic 35.0%
!! ACTGGTCTTGCTACAAAAAA+TGG + chr1_2:31296632-31296651 None:intergenic 35.0%
AAGAAATTAGTTGCAACTGC+AGG + chr1_2:31297140-31297159 None:intergenic 35.0%
! TTCTTTTCATAGGAGCTCAA+TGG - chr1_2:31297245-31297264 Msa0066990:intron 35.0%
GCAATTGAAATGCTTAAGTC+AGG - chr1_2:31297289-31297308 Msa0066990:CDS 35.0%
! AAGCTGTCATTTGTGTACAA+AGG - chr1_2:31297320-31297339 Msa0066990:CDS 35.0%
TTAAGGTTAGGAGACAATGT+TGG + chr1_2:31297628-31297647 None:intergenic 35.0%
!! CTTTTGTTGAGTGTTGTTCT+AGG + chr1_2:31297897-31297916 None:intergenic 35.0%
!!! TTTTTAGGATGCTTGCAATG+GGG + chr1_2:31298213-31298232 None:intergenic 35.0%
ATTCAAGTATTTGACCTTGC+TGG + chr1_2:31298475-31298494 None:intergenic 35.0%
TTGGTTCAGAGAATCTCTTA+CGG + chr1_2:31298513-31298532 None:intergenic 35.0%
! CTCAATCATTGGTAATTGAC+AGG + chr1_2:31298561-31298580 None:intergenic 35.0%
AGAATGAACCTTTACAGTAG+TGG + chr1_2:31298857-31298876 None:intergenic 35.0%
TACAACATAACCAGTCACAA+TGG + chr1_2:31298903-31298922 None:intergenic 35.0%
AATTGCAGCATTAAGATCTG+TGG - chr1_2:31298941-31298960 Msa0066990:intron 35.0%
AGAGCTTATCCAAATTCAAG+TGG + chr1_2:31298971-31298990 None:intergenic 35.0%
! ATAATGGAGAACTGTTTCAG+GGG + chr1_2:31299163-31299182 None:intergenic 35.0%
! CATAATGGAGAACTGTTTCA+GGG + chr1_2:31299164-31299183 None:intergenic 35.0%
! TCATAATGGAGAACTGTTTC+AGG + chr1_2:31299165-31299184 None:intergenic 35.0%
! GGACAGAAACTTTTCATCAA+AGG + chr1_2:31299775-31299794 None:intergenic 35.0%
! GGCTTAAAACTGCAGATTTT+TGG - chr1_2:31299955-31299974 Msa0066990:intron 35.0%
! ATGTTATTGATTGCGAATGG+TGG + chr1_2:31299995-31300014 None:intergenic 35.0%
! TGTCTCTTGCTTTATTACCA+AGG - chr1_2:31300015-31300034 Msa0066990:intron 35.0%
CAGTTTCTGTTTAAACTTCC+TGG - chr1_2:31300055-31300074 Msa0066990:intron 35.0%
CATCAACCAAATCATTTGCT+GGG + chr1_2:31300219-31300238 None:intergenic 35.0%
ACATCAACCAAATCATTTGC+TGG + chr1_2:31300220-31300239 None:intergenic 35.0%
ACAAATAACCTGTAGCAAGA+CGG + chr1_2:31300250-31300269 None:intergenic 35.0%
! TGTGTTTAGAATCACGAGTT+TGG - chr1_2:31300278-31300297 Msa0066990:intron 35.0%
!! GGTGTAATATTTTCAGGACT+TGG - chr1_2:31300573-31300592 Msa0066990:intron 35.0%
!!! ATGCTGATTCCGGAATATTT+TGG + chr1_2:31300619-31300638 None:intergenic 35.0%
! GAAAGTGCAAAAACAGACTT+AGG + chr1_2:31300692-31300711 None:intergenic 35.0%
CGTGCATAAATGTTTCTTGA+AGG - chr1_2:31300740-31300759 Msa0066990:intron 35.0%
! CTTTTCGCTGTATAATTCAG+GGG - chr1_2:31300940-31300959 Msa0066990:intron 35.0%
! TTTTCGCTGTATAATTCAGG+GGG - chr1_2:31300941-31300960 Msa0066990:intron 35.0%
TTAACAGTCTCCATGACAAA+TGG + chr1_2:31300975-31300994 None:intergenic 35.0%
ATTTGTCATGGAGACTGTTA+AGG - chr1_2:31300974-31300993 Msa0066990:intron 35.0%
ATGAGGTCAAAATATGTCGA+CGG + chr1_2:31301084-31301103 None:intergenic 35.0%
AAATAAAGCATGCGAACATG+AGG + chr1_2:31301101-31301120 None:intergenic 35.0%
! GAAATGGATTTATCTCTCCA+TGG - chr1_2:31301140-31301159 Msa0066990:intron 35.0%
TTAAACTTCACATTCTCCCA+TGG + chr1_2:31301160-31301179 None:intergenic 35.0%
CGCTTGATTATCATACCATT+CGG - chr1_2:31301481-31301500 Msa0066990:CDS 35.0%
TTATACGTAAATCGGTTGTG+GGG - chr1_2:31301510-31301529 Msa0066990:CDS 35.0%
GTTGAAACATAAATGGTTGC+AGG - chr1_2:31301606-31301625 Msa0066990:intron 35.0%
TCTCAGAGAAGTGATTCTAA+AGG - chr1_2:31301705-31301724 Msa0066990:intron 35.0%
TTCATGGTACACAATACAAG+GGG - chr1_2:31301911-31301930 Msa0066990:intron 35.0%
! AGAAGAAGAAGAAGCACGAA+TGG + chr1_2:31294500-31294519 None:intergenic 40.0%
AGAGAAAAAGAAGAGGTGGT+AGG + chr1_2:31294544-31294563 None:intergenic 40.0%
ATGCAGAGAAAAAGAAGAGG+TGG + chr1_2:31294548-31294567 None:intergenic 40.0%
AGCATGCAGAGAAAAAGAAG+AGG + chr1_2:31294551-31294570 None:intergenic 40.0%
CATGCTATGAACCACTGTTA+CGG - chr1_2:31294565-31294584 Msa0066990:exon 40.0%
ACACGGACACTCATCAAATT+AGG + chr1_2:31294671-31294690 None:intergenic 40.0%
TGCATGCAGACTATGAAACA+CGG + chr1_2:31294688-31294707 None:intergenic 40.0%
! TGGTTCTGCTACCAAAAGAA+AGG + chr1_2:31294747-31294766 None:intergenic 40.0%
!!! CAGTCCTGTTTTGAAATGGA+TGG + chr1_2:31294767-31294786 None:intergenic 40.0%
CATCCATTTCAAAACAGGAC+TGG - chr1_2:31294765-31294784 Msa0066990:CDS 40.0%
! GCATTGATCTTTAGCTGGAT+AGG + chr1_2:31294825-31294844 None:intergenic 40.0%
! TGACTGCATTGATCTTTAGC+TGG + chr1_2:31294830-31294849 None:intergenic 40.0%
AAAGATCAATGCAGTCAGTG+TGG - chr1_2:31294833-31294852 Msa0066990:intron 40.0%
CATTATGTCAGGGATCAAGT+TGG - chr1_2:31295121-31295140 Msa0066990:intron 40.0%
!!! GGGATCAAGTTGGTTTTGTA+AGG - chr1_2:31295131-31295150 Msa0066990:intron 40.0%
GGTAGCAGAGCTATTCATTT+GGG - chr1_2:31295207-31295226 Msa0066990:intron 40.0%
CATCCATCAAGTTATCCACT+TGG - chr1_2:31295231-31295250 Msa0066990:intron 40.0%
AACCCAAGTGGATAACTTGA+TGG + chr1_2:31295237-31295256 None:intergenic 40.0%
ATCAAGTTATCCACTTGGGT+TGG - chr1_2:31295236-31295255 Msa0066990:intron 40.0%
ATAATCGAACCTGAGACCTT+AGG + chr1_2:31295300-31295319 None:intergenic 40.0%
GCATTAAGTCCAGTAGTACT+GGG - chr1_2:31295378-31295397 Msa0066990:intron 40.0%
CATTTCATTCCCAGTACTAC+TGG + chr1_2:31295390-31295409 None:intergenic 40.0%
! TCTCTTTTCAATGCGAGACT+CGG + chr1_2:31295433-31295452 None:intergenic 40.0%
AGAGACACCCTTTATCTTAG+AGG - chr1_2:31295475-31295494 Msa0066990:intron 40.0%
!! ACATCGGCCTCTAAGATAAA+GGG + chr1_2:31295485-31295504 None:intergenic 40.0%
!! AACATCGGCCTCTAAGATAA+AGG + chr1_2:31295486-31295505 None:intergenic 40.0%
CGATGTTGTAAGGATGAGTT+AGG - chr1_2:31295499-31295518 Msa0066990:intron 40.0%
ACTTCAGTCGGAGAAGAAAA+GGG + chr1_2:31295614-31295633 None:intergenic 40.0%
AACTTCAGTCGGAGAAGAAA+AGG + chr1_2:31295615-31295634 None:intergenic 40.0%
AACCTGTTGTTCATGGTAGA+GGG - chr1_2:31296103-31296122 Msa0066990:intron 40.0%
ACCTTAGATGAGACCTACTT+AGG - chr1_2:31296138-31296157 Msa0066990:intron 40.0%
CCTTAGATGAGACCTACTTA+GGG - chr1_2:31296139-31296158 Msa0066990:intron 40.0%
CTTAGATGAGACCTACTTAG+GGG - chr1_2:31296140-31296159 Msa0066990:intron 40.0%
ATGAGGAACTTCTGTATGCT+CGG - chr1_2:31296166-31296185 Msa0066990:intron 40.0%
GTCAGAATATACCTTCGACA+GGG + chr1_2:31296200-31296219 None:intergenic 40.0%
AGTCAGAATATACCTTCGAC+AGG + chr1_2:31296201-31296220 None:intergenic 40.0%
CTCTGATATGTGACATTGGT+AGG - chr1_2:31296449-31296468 Msa0066990:intron 40.0%
TAGGCTGACTATAAATAGGG+AGG - chr1_2:31296507-31296526 Msa0066990:intron 40.0%
! AATATGGGCCTTTTGGCATT+GGG - chr1_2:31296552-31296571 Msa0066990:intron 40.0%
CTGCCTCTATTCTATAAACC+AGG - chr1_2:31296596-31296615 Msa0066990:intron 40.0%
TCAATGACTAACGCCTAGTT+TGG - chr1_2:31296782-31296801 Msa0066990:intron 40.0%
ATGCTATCATGGAGAGCTTA+TGG - chr1_2:31296916-31296935 Msa0066990:intron 40.0%
ACGAACTTGCGAAACTGTTA+AGG + chr1_2:31296991-31297010 None:intergenic 40.0%
TGAAATGCTTAAGTCAGGCA+TGG - chr1_2:31297294-31297313 Msa0066990:CDS 40.0%
AACCTTGCTAAAACAGGTCT+GGG + chr1_2:31297482-31297501 None:intergenic 40.0%
CGTTTCGTTCAAATGGATGA+AGG - chr1_2:31297802-31297821 Msa0066990:intron 40.0%
GATGAAGGTTACAATCCACA+CGG - chr1_2:31297817-31297836 Msa0066990:intron 40.0%
TCTTCCAAAACTAGGGAAAC+CGG + chr1_2:31298188-31298207 None:intergenic 40.0%
!!! TTTTAGGATGCTTGCAATGG+GGG + chr1_2:31298212-31298231 None:intergenic 40.0%
TCTCTGACTCTTAAAGGAGA+AGG - chr1_2:31298405-31298424 Msa0066990:intron 40.0%
TTTCATCATTGACAGGCTTC+AGG - chr1_2:31298784-31298803 Msa0066990:intron 40.0%
AACCAGTCACAATGGAGAAA+GGG + chr1_2:31298895-31298914 None:intergenic 40.0%
TAACCAGTCACAATGGAGAA+AGG + chr1_2:31298896-31298915 None:intergenic 40.0%
CTATGTTCCTTATTCGACAG+TGG - chr1_2:31299086-31299105 Msa0066990:intron 40.0%
AAGCTATCTCAGGAAGCTAA+TGG + chr1_2:31299361-31299380 None:intergenic 40.0%
TAGCTTCCTGAGATAGCTTA+CGG - chr1_2:31299362-31299381 Msa0066990:intron 40.0%
CAATTTCCGTAAGCTATCTC+AGG + chr1_2:31299371-31299390 None:intergenic 40.0%
TTTATCCAAACATGGCCCTA+GGG - chr1_2:31299502-31299521 Msa0066990:intron 40.0%
TCGTAGTAGTTAGGAACAGT+TGG - chr1_2:31299619-31299638 Msa0066990:intron 40.0%
CGTAGTAGTTAGGAACAGTT+GGG - chr1_2:31299620-31299639 Msa0066990:intron 40.0%
GTAGTAGTTAGGAACAGTTG+GGG - chr1_2:31299621-31299640 Msa0066990:intron 40.0%
GTGGAGAAATAAGGGTAGAA+AGG - chr1_2:31299676-31299695 Msa0066990:intron 40.0%
! ACTACCACAATGTATTGGTC+AGG - chr1_2:31299800-31299819 Msa0066990:intron 40.0%
ATTGCCTGACCAATACATTG+TGG + chr1_2:31299807-31299826 None:intergenic 40.0%
TAGAAAAGTCTGAGGACAGT+TGG + chr1_2:31299899-31299918 None:intergenic 40.0%
TAAGCCATCATGTAACACCA+TGG + chr1_2:31299941-31299960 None:intergenic 40.0%
!!! AGATTTTTGGGTTTCCTCCA+TGG - chr1_2:31299968-31299987 Msa0066990:intron 40.0%
TTCTGTTTAAACTTCCTGGC+AGG - chr1_2:31300059-31300078 Msa0066990:intron 40.0%
! GTTCACTTGAAGCATTTGGA+CGG - chr1_2:31300081-31300100 Msa0066990:intron 40.0%
TTTGCTGGGAGACAGAAATA+AGG + chr1_2:31300205-31300224 None:intergenic 40.0%
TTTGTATACAGGTGAGCAAG+TGG + chr1_2:31300490-31300509 None:intergenic 40.0%
!! TATTTTCAGGACTTGGTCGT+TGG - chr1_2:31300580-31300599 Msa0066990:intron 40.0%
! GACTTGGTCGTTGGATATAT+GGG - chr1_2:31300589-31300608 Msa0066990:intron 40.0%
!! ATGTTGTGTCATGCTGATTC+CGG + chr1_2:31300629-31300648 None:intergenic 40.0%
!!! TTTCCAACAAATTTTGGGGC+AGG + chr1_2:31301296-31301315 None:intergenic 40.0%
TCTGCTTTCTATGTTCAGGT+TGG - chr1_2:31301429-31301448 Msa0066990:CDS 40.0%
TATACGTAAATCGGTTGTGG+GGG - chr1_2:31301511-31301530 Msa0066990:CDS 40.0%
! CTTTTGCATCAAAGTGAAGC+TGG + chr1_2:31301569-31301588 None:intergenic 40.0%
GTCAAAACTTTGTCTCTAGC+TGG - chr1_2:31301824-31301843 Msa0066990:exon 40.0%
AGCACGAATGGAGAGAGAAA+GGG + chr1_2:31294488-31294507 None:intergenic 45.0%
AAGCACGAATGGAGAGAGAA+AGG + chr1_2:31294489-31294508 None:intergenic 45.0%
AATTAGGCATGTCCCGAACA+CGG + chr1_2:31294655-31294674 None:intergenic 45.0%
!!! CCTCCAGTCCTGTTTTGAAA+TGG + chr1_2:31294771-31294790 None:intergenic 45.0%
CCATTTCAAAACAGGACTGG+AGG - chr1_2:31294768-31294787 Msa0066990:CDS 45.0%
CAAAACAGGACTGGAGGAAA+AGG - chr1_2:31294774-31294793 Msa0066990:CDS 45.0%
CGGTAGCAGAGCTATTCATT+TGG - chr1_2:31295206-31295225 Msa0066990:intron 45.0%
!! GTTATCCACTTGGGTTGGTA+TGG - chr1_2:31295241-31295260 Msa0066990:intron 45.0%
!! ATATTCGGTGCCAATTTGGG+TGG - chr1_2:31295318-31295337 Msa0066990:intron 45.0%
!! TATTCGGTGCCAATTTGGGT+GGG - chr1_2:31295319-31295338 Msa0066990:intron 45.0%
CTAAACTAGCCCACCCAAAT+TGG + chr1_2:31295331-31295350 None:intergenic 45.0%
GTACTACTGGACTTAATGCG+TGG + chr1_2:31295377-31295396 None:intergenic 45.0%
CGCATTAAGTCCAGTAGTAC+TGG - chr1_2:31295377-31295396 Msa0066990:intron 45.0%
! CTCTTTTCAATGCGAGACTC+GGG + chr1_2:31295432-31295451 None:intergenic 45.0%
TCTTAGAGGCCGATGTTGTA+AGG - chr1_2:31295489-31295508 Msa0066990:intron 45.0%
CATTCTAGTGCAGCAGAATC+TGG - chr1_2:31295756-31295775 Msa0066990:intron 45.0%
GCAGAATCTGGCATTTGATC+CGG - chr1_2:31295768-31295787 Msa0066990:intron 45.0%
GAACCTGTTGTTCATGGTAG+AGG - chr1_2:31296102-31296121 Msa0066990:intron 45.0%
CCCTAAGTAGGTCTCATCTA+AGG + chr1_2:31296142-31296161 None:intergenic 45.0%
TTCCTCATAGACCCCTAAGT+AGG + chr1_2:31296154-31296173 None:intergenic 45.0%
!!! GGTTTTTTGGTGGGATCTCT+TGG - chr1_2:31296387-31296406 Msa0066990:intron 45.0%
ATTGGTAGGTAACCCCTTTG+TGG - chr1_2:31296463-31296482 Msa0066990:intron 45.0%
TTGGTAGGTAACCCCTTTGT+GGG - chr1_2:31296464-31296483 Msa0066990:intron 45.0%
! GAATATGGGCCTTTTGGCAT+TGG - chr1_2:31296551-31296570 Msa0066990:intron 45.0%
! GAATAGAGGCAGAGCTTTGA+GGG + chr1_2:31296588-31296607 None:intergenic 45.0%
AGAATAGAGGCAGAGCTTTG+AGG + chr1_2:31296589-31296608 None:intergenic 45.0%
GGAGGCCATCAAAGTATGAT+AGG + chr1_2:31296660-31296679 None:intergenic 45.0%
! AGAGGTCCTCGTTGAGTTTT+TGG - chr1_2:31297045-31297064 Msa0066990:intron 45.0%
GTCTGTCCAAAAACTCAACG+AGG + chr1_2:31297054-31297073 None:intergenic 45.0%
TTCATAGGAGCTCAATGGAC+TGG - chr1_2:31297250-31297269 Msa0066990:intron 45.0%
CAACCTTGCTAAAACAGGTC+TGG + chr1_2:31297483-31297502 None:intergenic 45.0%
!!! CAGACCTGTTTTAGCAAGGT+TGG - chr1_2:31297481-31297500 Msa0066990:intron 45.0%
GATGCCAACCTTGCTAAAAC+AGG + chr1_2:31297488-31297507 None:intergenic 45.0%
TTAGCAGCCATCACTTCTTC+TGG + chr1_2:31297595-31297614 None:intergenic 45.0%
GAAGAAGTGATGGCTGCTAA+AGG - chr1_2:31297595-31297614 Msa0066990:intron 45.0%
!! AGCGCAAGGGTATTAAGGTT+AGG + chr1_2:31297640-31297659 None:intergenic 45.0%
!! CAACAAGCGCAAGGGTATTA+AGG + chr1_2:31297645-31297664 None:intergenic 45.0%
! TAATACCCTTGCGCTTGTTG+AGG - chr1_2:31297645-31297664 Msa0066990:intron 45.0%
ACAAACCTCAACAAGCGCAA+GGG + chr1_2:31297653-31297672 None:intergenic 45.0%
!! TCTAGGGCGTTGTAGTGTAT+TGG - chr1_2:31297848-31297867 Msa0066990:intron 45.0%
ACTTGAGAATGCTCTAGCCT+AGG - chr1_2:31298102-31298121 Msa0066990:intron 45.0%
AAATCTACGGGCGAACAATC+CGG - chr1_2:31298166-31298185 Msa0066990:intron 45.0%
! CAATCCGGTTTCCCTAGTTT+TGG - chr1_2:31298181-31298200 Msa0066990:intron 45.0%
TGGGGGATCTTCCAAAACTA+GGG + chr1_2:31298195-31298214 None:intergenic 45.0%
ATGGGGGATCTTCCAAAACT+AGG + chr1_2:31298196-31298215 None:intergenic 45.0%
TTGAAGGACCAGATGCTCTT+AGG + chr1_2:31298333-31298352 None:intergenic 45.0%
AACTTGTAGTGAGTCCAGCA+AGG - chr1_2:31298458-31298477 Msa0066990:CDS 45.0%
! GTCAAGCGTCTTCTTTTCTG+TGG - chr1_2:31298808-31298827 Msa0066990:CDS 45.0%
! CGTCTTCTTTTCTGTGGTGT+AGG - chr1_2:31298814-31298833 Msa0066990:CDS 45.0%
CCTTTACAGTAGTGGTACCT+TGG + chr1_2:31298849-31298868 None:intergenic 45.0%
! CCAAGGTACCACTACTGTAA+AGG - chr1_2:31298846-31298865 Msa0066990:intron 45.0%
GTCACAATGGAGAAAGGGAA+AGG + chr1_2:31298890-31298909 None:intergenic 45.0%
TTCCCTTTCTCCATTGTGAC+TGG - chr1_2:31298890-31298909 Msa0066990:intron 45.0%
! TGTGGAGCACCACTTGAATT+TGG - chr1_2:31298959-31298978 Msa0066990:CDS 45.0%
CCATTGTCCACTGTCGAATA+AGG + chr1_2:31299096-31299115 None:intergenic 45.0%
CCTTATTCGACAGTGGACAA+TGG - chr1_2:31299093-31299112 Msa0066990:intron 45.0%
AAACTTATCCAGTCCTTCCC+TGG + chr1_2:31299121-31299140 None:intergenic 45.0%
GTTTATCCAAACATGGCCCT+AGG - chr1_2:31299501-31299520 Msa0066990:intron 45.0%
!! GTAGACAGCTTGGTGTAACA+TGG - chr1_2:31299526-31299545 Msa0066990:intron 45.0%
AAAGGGAGCTCGTAGTAGTT+AGG - chr1_2:31299610-31299629 Msa0066990:intron 45.0%
!! TGCACCATGGTGTTACATGA+TGG - chr1_2:31299934-31299953 Msa0066990:intron 45.0%
! GCAGGTTCACTTGAAGCATT+TGG - chr1_2:31300077-31300096 Msa0066990:intron 45.0%
TTTGGACGGTCGTATTGAAG+AGG - chr1_2:31300095-31300114 Msa0066990:CDS 45.0%
CTGTCTCCCAGCAAATGATT+TGG - chr1_2:31300210-31300229 Msa0066990:intron 45.0%
TTATTGCTCCGTCTTGCTAC+AGG - chr1_2:31300239-31300258 Msa0066990:intron 45.0%
AACTCAGTCGTGCTAAGTTC+TGG + chr1_2:31300459-31300478 None:intergenic 45.0%
! GGACTTGGTCGTTGGATATA+TGG - chr1_2:31300588-31300607 Msa0066990:intron 45.0%
ATGGGCGTGCCAAAATATTC+CGG - chr1_2:31300607-31300626 Msa0066990:intron 45.0%
TGAAACGACAGGAATGAACG+TGG - chr1_2:31300804-31300823 Msa0066990:intron 45.0%
GCTGTATAATTCAGGGGGAT+AGG - chr1_2:31300946-31300965 Msa0066990:intron 45.0%
! TGGCTCTGCTTTCTATGTTC+AGG - chr1_2:31301425-31301444 Msa0066990:CDS 45.0%
!! TATGTTCAGGTTGGTCCGAA+GGG - chr1_2:31301438-31301457 Msa0066990:CDS 45.0%
CGTGCAAATTCAATGCCCTT+CGG + chr1_2:31301456-31301475 None:intergenic 45.0%
TAAATGGTTGCAGGGCAGAT+AGG - chr1_2:31301615-31301634 Msa0066990:intron 45.0%
GGATTACATGCTCCAATCAG+TGG - chr1_2:31301726-31301745 Msa0066990:intron 45.0%
! AGCGAACACCGATGATGATG+TGG + chr1_2:31294411-31294430 None:intergenic 50.0%
GCTTAGCACACTAAGCTCAG+TGG + chr1_2:31294442-31294461 None:intergenic 50.0%
GCACGAATGGAGAGAGAAAG+GGG + chr1_2:31294487-31294506 None:intergenic 50.0%
CGTGTTAGTGTCCGTAACAG+TGG + chr1_2:31294579-31294598 None:intergenic 50.0%
GTCAGCGTCATATCCGTGTT+CGG - chr1_2:31294639-31294658 Msa0066990:CDS 50.0%
TCAGCGTCATATCCGTGTTC+GGG - chr1_2:31294640-31294659 Msa0066990:CDS 50.0%
TTAGCTGGATAGGTTCCACC+TGG + chr1_2:31294815-31294834 None:intergenic 50.0%
GCTTGTGCTTTCTTGGGAGA+TGG - chr1_2:31294893-31294912 Msa0066990:intron 50.0%
!! ATCCACTTGGGTTGGTATGG+TGG - chr1_2:31295244-31295263 Msa0066990:intron 50.0%
! CTTAGGAGGAGCATACTCCA+AGG + chr1_2:31295283-31295302 None:intergenic 50.0%
CTTGGAGTATGCTCCTCCTA+AGG - chr1_2:31295281-31295300 Msa0066990:CDS 50.0%
TATGCTCCTCCTAAGGTCTC+AGG - chr1_2:31295288-31295307 Msa0066990:CDS 50.0%
ATCGAACCTGAGACCTTAGG+AGG + chr1_2:31295297-31295316 None:intergenic 50.0%
ACTGCTCCTGCTTGAAGGAA+AGG - chr1_2:31295586-31295605 Msa0066990:intron 50.0%
! AGGGTACCTTTCCTTCAAGC+AGG + chr1_2:31295595-31295614 None:intergenic 50.0%
CTCCCTCTACCATGAACAAC+AGG + chr1_2:31296108-31296127 None:intergenic 50.0%
GACCTACTTAGGGGTCTATG+AGG - chr1_2:31296149-31296168 Msa0066990:intron 50.0%
CGGAAACTTAACCCTGTCGA+AGG - chr1_2:31296186-31296205 Msa0066990:CDS 50.0%
!!! CTCCCAGACCTGTTTTAGCA+AGG - chr1_2:31297477-31297496 Msa0066990:CDS 50.0%
CAGGACACCAGAAGAAGTGA+TGG - chr1_2:31297585-31297604 Msa0066990:intron 50.0%
CACAAACCTCAACAAGCGCA+AGG + chr1_2:31297654-31297673 None:intergenic 50.0%
GAAGGTTACAATCCACACGG+CGG - chr1_2:31297820-31297839 Msa0066990:intron 50.0%
!! GGACATTGCCTAAGAGCATC+TGG - chr1_2:31298322-31298341 Msa0066990:intron 50.0%
TTTCTGTGGTGTAGGTTGCC+AGG - chr1_2:31298822-31298841 Msa0066990:intron 50.0%
GACAGTGGACAATGGAACCA+GGG - chr1_2:31299101-31299120 Msa0066990:intron 50.0%
! CTTGGTGTAACATGGCCCTA+GGG - chr1_2:31299534-31299553 Msa0066990:intron 50.0%
!! TGATTGCGAATGGTGGACCA+TGG + chr1_2:31299988-31300007 None:intergenic 50.0%
ATGCTTCAAGTGAACCTGCC+AGG + chr1_2:31300076-31300095 None:intergenic 50.0%
GGATAGGCGACCATTTGTCA+TGG - chr1_2:31300962-31300981 Msa0066990:intron 50.0%
!!! ACAAATTTTGGGGCAGGCTG+AGG + chr1_2:31301290-31301309 None:intergenic 50.0%
CAGCCTGCCCCAAAATTTGT+TGG - chr1_2:31301290-31301309 Msa0066990:intron 50.0%
!! CTATGTTCAGGTTGGTCCGA+AGG - chr1_2:31301437-31301456 Msa0066990:CDS 50.0%
! TGGGGGAAGGAAAGGTATGT+AGG - chr1_2:31301528-31301547 Msa0066990:intron 50.0%
CATGCTCCAATCAGTGGCAT+AGG - chr1_2:31301732-31301751 Msa0066990:intron 50.0%
AGGTCAAAGCCTATCCCACC+AGG - chr1_2:31294794-31294813 Msa0066990:CDS 55.0%
TCAAAGCCTATCCCACCAGG+TGG - chr1_2:31294797-31294816 Msa0066990:CDS 55.0%
TAGGTTCCACCTGGTGGGAT+AGG + chr1_2:31294806-31294825 None:intergenic 55.0%
CTGGATAGGTTCCACCTGGT+GGG + chr1_2:31294811-31294830 None:intergenic 55.0%
CACCACCATACCAACCCAAG+TGG + chr1_2:31295249-31295268 None:intergenic 55.0%
!! CACTTGGGTTGGTATGGTGG+TGG - chr1_2:31295247-31295266 Msa0066990:intron 55.0%
! GTGGTGGTAACGTGAGACCT+TGG - chr1_2:31295263-31295282 Msa0066990:intron 55.0%
GCACAACTGCTCCTGCTTGA+AGG - chr1_2:31295581-31295600 Msa0066990:intron 55.0%
!! ATGGGCCTTTTGGCATTGGG+AGG - chr1_2:31296555-31296574 Msa0066990:intron 55.0%
!! GCCTTTTGGCATTGGGAGGT+GGG - chr1_2:31296559-31296578 Msa0066990:intron 55.0%
TCCCACCTCCCAATGCCAAA+AGG + chr1_2:31296563-31296582 None:intergenic 55.0%
CTGGGAGCAAATCTGTCGTC+AGG + chr1_2:31297464-31297483 None:intergenic 55.0%
CAGTAGTGGTACCTTGGACC+TGG + chr1_2:31298843-31298862 None:intergenic 55.0%
CGACAGTGGACAATGGAACC+AGG - chr1_2:31299100-31299119 Msa0066990:intron 55.0%
GTGGACAATGGAACCAGGGA+AGG - chr1_2:31299105-31299124 Msa0066990:intron 55.0%
CAATGGAACCAGGGAAGGAC+TGG - chr1_2:31299110-31299129 Msa0066990:intron 55.0%
ACCAAGCTGTCTACGCCCTA+GGG + chr1_2:31299520-31299539 None:intergenic 55.0%
!! GCTTGGTGTAACATGGCCCT+AGG - chr1_2:31299533-31299552 Msa0066990:intron 55.0%
ATCAAGCTGTCCACGCCCTA+GGG + chr1_2:31299552-31299571 None:intergenic 55.0%
GTCTGAGGACAGTTGGCAAG+AGG + chr1_2:31299892-31299911 None:intergenic 55.0%
! TGTGAAGGTTGGCTGCACCA+TGG - chr1_2:31299921-31299940 Msa0066990:intron 55.0%
!! TTGCGAATGGTGGACCATGG+AGG + chr1_2:31299985-31300004 None:intergenic 55.0%
!!! AATTTTGGGGCAGGCTGAGG+AGG + chr1_2:31301287-31301306 None:intergenic 55.0%
CGTAAATCGGTTGTGGGGGA+AGG - chr1_2:31301515-31301534 Msa0066990:CDS 55.0%
ATCGGTTGTGGGGGAAGGAA+AGG - chr1_2:31301520-31301539 Msa0066990:intron 55.0%
GGCACACCTATGCCACTGAT+TGG + chr1_2:31301741-31301760 None:intergenic 55.0%
GCTGGATAGGTTCCACCTGG+TGG + chr1_2:31294812-31294831 None:intergenic 60.0%
!! GGCCTTTTGGCATTGGGAGG+TGG - chr1_2:31296558-31296577 Msa0066990:intron 60.0%
TCCACACGGCGGTTCTGTCT+AGG - chr1_2:31297831-31297850 Msa0066990:intron 60.0%
CCACACGGCGGTTCTGTCTA+GGG - chr1_2:31297832-31297851 Msa0066990:intron 60.0%
GGTGTAGGTTGCCAGGTCCA+AGG - chr1_2:31298829-31298848 Msa0066990:intron 60.0%
CTACGCCCTAGGGCCATGTT+TGG + chr1_2:31299510-31299529 None:intergenic 60.0%
CACCAAGCTGTCTACGCCCT+AGG + chr1_2:31299521-31299540 None:intergenic 60.0%
TGTAACATGGCCCTAGGGCG+TGG - chr1_2:31299539-31299558 Msa0066990:intron 60.0%
CATCAAGCTGTCCACGCCCT+AGG + chr1_2:31299553-31299572 None:intergenic 60.0%
CCCTAGACAGAACCGCCGTG+TGG + chr1_2:31297835-31297854 None:intergenic 65.0%
GCCCTAGGGCGTAGACAGCT+TGG - chr1_2:31299516-31299535 Msa0066990:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 31294290 31302006 31294290 ID=Msa0066990;Name=Msa0066990
chr1_2 mRNA 31294290 31302006 31294290 ID=Msa0066990-mRNA-1;Parent=Msa0066990;Name=Msa0066990-mRNA-1;_AED=0.26;_eAED=0.26;_QI=133|0.75|0.85|0.90|0.95|0.90|21|288|494
chr1_2 exon 31294290 31294668 31294290 ID=Msa0066990-mRNA-1:exon:10412;Parent=Msa0066990-mRNA-1
chr1_2 exon 31294755 31294849 31294755 ID=Msa0066990-mRNA-1:exon:10411;Parent=Msa0066990-mRNA-1
chr1_2 exon 31294956 31295020 31294956 ID=Msa0066990-mRNA-1:exon:10410;Parent=Msa0066990-mRNA-1
chr1_2 exon 31295279 31295336 31295279 ID=Msa0066990-mRNA-1:exon:10409;Parent=Msa0066990-mRNA-1
chr1_2 exon 31295412 31295481 31295412 ID=Msa0066990-mRNA-1:exon:10408;Parent=Msa0066990-mRNA-1
chr1_2 exon 31295628 31295707 31295628 ID=Msa0066990-mRNA-1:exon:10407;Parent=Msa0066990-mRNA-1
chr1_2 exon 31295894 31295921 31295894 ID=Msa0066990-mRNA-1:exon:10406;Parent=Msa0066990-mRNA-1
chr1_2 exon 31296036 31296097 31296036 ID=Msa0066990-mRNA-1:exon:10405;Parent=Msa0066990-mRNA-1
chr1_2 exon 31296180 31296215 31296180 ID=Msa0066990-mRNA-1:exon:10404;Parent=Msa0066990-mRNA-1
chr1_2 exon 31297093 31297190 31297093 ID=Msa0066990-mRNA-1:exon:10403;Parent=Msa0066990-mRNA-1
chr1_2 exon 31297285 31297347 31297285 ID=Msa0066990-mRNA-1:exon:10402;Parent=Msa0066990-mRNA-1
chr1_2 exon 31297446 31297497 31297446 ID=Msa0066990-mRNA-1:exon:10401;Parent=Msa0066990-mRNA-1
chr1_2 exon 31298450 31298512 31298450 ID=Msa0066990-mRNA-1:exon:10400;Parent=Msa0066990-mRNA-1
chr1_2 exon 31298630 31298708 31298630 ID=Msa0066990-mRNA-1:exon:10399;Parent=Msa0066990-mRNA-1
chr1_2 exon 31298798 31298839 31298798 ID=Msa0066990-mRNA-1:exon:10398;Parent=Msa0066990-mRNA-1
chr1_2 exon 31298955 31299039 31298955 ID=Msa0066990-mRNA-1:exon:10397;Parent=Msa0066990-mRNA-1
chr1_2 exon 31300089 31300200 31300089 ID=Msa0066990-mRNA-1:exon:10396;Parent=Msa0066990-mRNA-1
chr1_2 exon 31300628 31300693 31300628 ID=Msa0066990-mRNA-1:exon:10395;Parent=Msa0066990-mRNA-1
chr1_2 exon 31301365 31301537 31301365 ID=Msa0066990-mRNA-1:exon:10394;Parent=Msa0066990-mRNA-1
chr1_2 exon 31301767 31301921 31301767 ID=Msa0066990-mRNA-1:exon:10393;Parent=Msa0066990-mRNA-1
chr1_2 exon 31301962 31302006 31301962 ID=Msa0066990-mRNA-1:exon:10392;Parent=Msa0066990-mRNA-1
chr1_2 five_prime_UTR 31301962 31302006 31301962 ID=Msa0066990-mRNA-1:five_prime_utr;Parent=Msa0066990-mRNA-1
chr1_2 five_prime_UTR 31301834 31301921 31301834 ID=Msa0066990-mRNA-1:five_prime_utr;Parent=Msa0066990-mRNA-1
chr1_2 CDS 31301767 31301833 31301767 ID=Msa0066990-mRNA-1:cds;Parent=Msa0066990-mRNA-1
chr1_2 CDS 31301365 31301537 31301365 ID=Msa0066990-mRNA-1:cds;Parent=Msa0066990-mRNA-1
chr1_2 CDS 31300628 31300693 31300628 ID=Msa0066990-mRNA-1:cds;Parent=Msa0066990-mRNA-1
chr1_2 CDS 31300089 31300200 31300089 ID=Msa0066990-mRNA-1:cds;Parent=Msa0066990-mRNA-1
chr1_2 CDS 31298955 31299039 31298955 ID=Msa0066990-mRNA-1:cds;Parent=Msa0066990-mRNA-1
chr1_2 CDS 31298798 31298839 31298798 ID=Msa0066990-mRNA-1:cds;Parent=Msa0066990-mRNA-1
chr1_2 CDS 31298630 31298708 31298630 ID=Msa0066990-mRNA-1:cds;Parent=Msa0066990-mRNA-1
chr1_2 CDS 31298450 31298512 31298450 ID=Msa0066990-mRNA-1:cds;Parent=Msa0066990-mRNA-1
chr1_2 CDS 31297446 31297497 31297446 ID=Msa0066990-mRNA-1:cds;Parent=Msa0066990-mRNA-1
chr1_2 CDS 31297285 31297347 31297285 ID=Msa0066990-mRNA-1:cds;Parent=Msa0066990-mRNA-1
chr1_2 CDS 31297093 31297190 31297093 ID=Msa0066990-mRNA-1:cds;Parent=Msa0066990-mRNA-1
chr1_2 CDS 31296180 31296215 31296180 ID=Msa0066990-mRNA-1:cds;Parent=Msa0066990-mRNA-1
chr1_2 CDS 31296036 31296097 31296036 ID=Msa0066990-mRNA-1:cds;Parent=Msa0066990-mRNA-1
chr1_2 CDS 31295894 31295921 31295894 ID=Msa0066990-mRNA-1:cds;Parent=Msa0066990-mRNA-1
chr1_2 CDS 31295628 31295707 31295628 ID=Msa0066990-mRNA-1:cds;Parent=Msa0066990-mRNA-1
chr1_2 CDS 31295412 31295481 31295412 ID=Msa0066990-mRNA-1:cds;Parent=Msa0066990-mRNA-1
chr1_2 CDS 31295279 31295336 31295279 ID=Msa0066990-mRNA-1:cds;Parent=Msa0066990-mRNA-1
chr1_2 CDS 31294956 31295020 31294956 ID=Msa0066990-mRNA-1:cds;Parent=Msa0066990-mRNA-1
chr1_2 CDS 31294755 31294849 31294755 ID=Msa0066990-mRNA-1:cds;Parent=Msa0066990-mRNA-1
chr1_2 CDS 31294578 31294668 31294578 ID=Msa0066990-mRNA-1:cds;Parent=Msa0066990-mRNA-1
chr1_2 three_prime_UTR 31294290 31294577 31294290 ID=Msa0066990-mRNA-1:three_prime_utr;Parent=Msa0066990-mRNA-1
Gene Sequence

>Msa0066990

ATGTCTTCTTTCTCTTCGCTACCCCTTTCTCTCTCCATTCGTGCTTCTTCTTCTTCTTCATCACAAGCAGAACCATCCATTTCAAAACAGGACTGGAGGAAAAGGTCAAAGCCTATCCCACCAGGTGGAACCTATCCAGCTAAAGATCAATGCAGTCAGTGTGGATTGTGTGATACATATTATATTGCTCATGTTAAGAATGCTTGTGCTTTCTTGGGAGATGGAATGTCTAAAATTGAAGAAAGGTACCCTTTTCTTCTCCGACTGAAGTTTTATGTTCGCTTAGTTTACAAAGTTGCTAACAAGAAATTGGAACCTGTTGTTCATGGTAGAGGGAGAAAAACTGATACCTTAGATGAGACCTACTTAGGGGTCTATGAGGAACTTCTGTATGCTCGGAAACTTAACCCTGTCGAAGGAGCTCAATGGACTGGTATAGTAACAACCATTGCAATTGAAATGCTTAAGTCAGGCATGGTTGAAGCTGTCATTTGTGTACAAAGTGATCCTGACGACAGATTTGCTCCCAGACCTGTTTTAGCAAGGACACCAGAAGAAGTGATGGCTGCTAAAGGCGTCAAGCCAACATTGTCTCCTAACCTTAATACCCTTGCGCTTGTTGAGGAAAGATATTTTATAAGACGTTTCGTTCAAATGGATGAAGGTTACAATCCACACGGCGGTTCTGCTTCAGGTGTCAAGCGTCTTCTTTTCTGTGGTGTAGGTTGCCAGGTCCAAGCATTAAGATCTGTGGAGCACCACTTGAATTTGGATAAGCTCTATGTTTTAGGCACAAATTGTGTGGACAATGGAACCAGGGAAGGACTGGATAAGTTTCTAAATGCTGCGAGTGATTCCCCTGAAACAGTTCTCCATTATGAGTTTATGCAAGATTACAAGGTTCACTTGAAGCATTTGGACGGTCGTATTGAAGAGGTTCCTTATTTCTGTCTCCCAGCAAATGATTTGGTTGATGTTATTGCTCCGTCTTGCTACAGCTGTTTTGACTATACAAATGGTTTAGCAGACTTGGTCGTTGGATATATGGGCGTGCCAAAATATTCCGGAATCAGCATGACACAACATCCACAATATATTACTGTCAGGAATGAACGTGGAAGAGAGATGATGAGTCTTGTAAAGAACTTACTAGAGATTACTCCAACAGTTAATTCAGGGGATAGGCGACCATTTGTCATGGAGACTGTTAAGGCTGATGATAAAGCTAAATTTGGAAGAGGTCCTCCTCAGCCTGCCCCAAAATTTGTTGGAAACTTGATTGCATTTATACTAAATTTGGTTGGTCCGAAGGGCATTGAATTTGCACGATACTCGCTTGATTATCATACCATTCGGAACTATTTATACGTAAATCGGTTGTGGGGGAAGGAAAGGGCAGATAGGCACATGCCTTCATATGCTAAGAAAATTGTGGATATGTACAACAAAAATGGTGAAATTGAAAAGATGCTCTCAGAGAAGTGA

Protein sequence

>Msa0066990

MSSFSSLPLSLSIRASSSSSSQAEPSISKQDWRKRSKPIPPGGTYPAKDQCSQCGLCDTYYIAHVKNACAFLGDGMSKIEERYPFLLRLKFYVRLVYKVANKKLEPVVHGRGRKTDTLDETYLGVYEELLYARKLNPVEGAQWTGIVTTIAIEMLKSGMVEAVICVQSDPDDRFAPRPVLARTPEEVMAAKGVKPTLSPNLNTLALVEERYFIRRFVQMDEGYNPHGGSASGVKRLLFCGVGCQVQALRSVEHHLNLDKLYVLGTNCVDNGTREGLDKFLNAASDSPETVLHYEFMQDYKVHLKHLDGRIEEVPYFCLPANDLVDVIAPSCYSCFDYTNGLADLVVGYMGVPKYSGISMTQHPQYITVRNERGREMMSLVKNLLEITPTVNSGDRRPFVMETVKADDKAKFGRGPPQPAPKFVGNLIAFILNLVGPKGIEFARYSLDYHTIRNYLYVNRLWGKERADRHMPSYAKKIVDMYNKNGEIEKMLSEK*