AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0372550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0372550 MtrunA17_Chr3g0119841 78.859 298 12 4 1 279 1 266 4.17e-164 456
Msa0372550 MtrunA17_Chr1g0184911 41.538 130 57 2 163 274 130 258 1.94e-33 122
Msa0372550 MtrunA17_Chr7g0260531 40.523 153 60 3 152 274 96 247 4.97e-32 118
Msa0372550 MtrunA17_Chr1g0194531 27.636 275 128 8 23 273 17 244 1.02e-20 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0372550 AT1G64680.1 60.000 270 53 3 28 279 18 250 4.49e-108 313
Msa0372550 AT1G64680.2 58.296 223 38 3 28 232 18 203 2.81e-79 239
Msa0372550 AT1G03055.1 28.413 271 125 7 8 260 32 251 7.85e-30 113
Msa0372550 AT4G01995.1 28.517 263 124 8 26 268 28 246 1.60e-19 85.9
Msa0372550 AT4G01995.3 32.778 180 72 5 108 268 66 215 1.79e-19 85.1

Find 61 sgRNAs with CRISPR-Local

Find 415 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAAGGTTGGTTGGATATT+TGG 0.135539 3_1:+71125334 Msa0372550:CDS
TTCTCATTTGTTTGTAATAT+TGG 0.161737 3_1:-71132817 None:intergenic
TTTCCTCTTGGAGCATATTT+TGG 0.212329 3_1:-71125132 None:intergenic
GAAAGGTTGGTTGGATATTT+GGG 0.230670 3_1:+71125335 Msa0372550:CDS
AGTTTGAAATATGTACATTA+TGG 0.245841 3_1:+71126284 Msa0372550:CDS
TAACTACGTTATTGCAGTTT+AGG 0.261184 3_1:+71126348 Msa0372550:CDS
CCATTTGCAGAGCCTGTAAT+AGG 0.265083 3_1:+71125288 Msa0372550:CDS
ATGAGTTGTGATATGGTTTA+TGG 0.271373 3_1:+71132487 Msa0372550:CDS
ATACTTGGAATCATTGTTAA+TGG 0.282259 3_1:-71132317 None:intergenic
TTCTCATGATTTCTACTTTG+AGG 0.336451 3_1:+71132752 Msa0372550:three_prime_UTR
ATCAGCATAGCAAGGTTGTT+TGG 0.360336 3_1:-71132545 None:intergenic
TCTGGTGAACCTGCTCCTTT+AGG 0.365720 3_1:+71125195 Msa0372550:CDS
CCTTTCTTCCACTGGCTAGT+TGG 0.368715 3_1:+71126425 Msa0372550:CDS
TTAGGACATATACTGGAGTT+TGG 0.369294 3_1:-71132663 None:intergenic
CTTCAAATGAAGGCGGGGTT+TGG 0.384590 3_1:-71132510 None:intergenic
TGAAGACATGAGTTGTGATA+TGG 0.393524 3_1:+71132480 Msa0372550:CDS
ACTAAAGATTAACCGGCCTT+TGG 0.408704 3_1:-71132952 None:intergenic
AACTCTGCAGCCCATCTTGT+TGG 0.428775 3_1:-71126383 None:intergenic
AAATATGCTCCAAGAGGAAA+TGG 0.435825 3_1:+71125135 Msa0372550:CDS
AGCAAGGTTGTTTGGAGACT+GGG 0.442350 3_1:-71132537 None:intergenic
TCTGCTCATGATTGTAGCTT+AGG 0.444862 3_1:-71132681 None:intergenic
TAGCAAGGTTGTTTGGAGAC+TGG 0.446056 3_1:-71132538 None:intergenic
TTGTAGCTTAGGACATATAC+TGG 0.446108 3_1:-71132670 None:intergenic
CCTATTACAGGCTCTGCAAA+TGG 0.450834 3_1:-71125288 None:intergenic
TACATATTTCAAACTAATAC+AGG 0.451100 3_1:-71126276 None:intergenic
TGACAGTGCCTTTCTTCCAC+TGG 0.455282 3_1:+71126417 Msa0372550:CDS
CTTCTTTCTATGCTTCCTCC+AGG 0.466971 3_1:+71125447 Msa0372550:CDS
CAACACATCCACTGTTCTCC+AGG 0.477413 3_1:-71132232 None:intergenic
ATCATGAGCAGACACTCCTT+TGG 0.478526 3_1:+71132692 Msa0372550:exon
GCAGTAGCACCATTTCCTCT+TGG 0.483001 3_1:-71125144 None:intergenic
AATTATTTCCACCAACAAGA+TGG 0.484190 3_1:+71126372 Msa0372550:CDS
AAAAGAAGGAAAAGAAAGGT+TGG 0.484991 3_1:+71125322 Msa0372550:CDS
CATTTGCAGAGCCTGTAATA+GGG 0.488770 3_1:+71125289 Msa0372550:CDS
CCAACTAGCCAGTGGAAGAA+AGG 0.501151 3_1:-71126425 None:intergenic
GAAGGAAAAGAAAGGTTGGT+TGG 0.501209 3_1:+71125326 Msa0372550:CDS
GGTCGTCTTCAAATGAAGGC+GGG 0.508459 3_1:-71132516 None:intergenic
TATTGTAATATATTTGTCAA+AGG 0.519655 3_1:+71132784 Msa0372550:three_prime_UTR
ATTATTTCCACCAACAAGAT+GGG 0.524598 3_1:+71126373 Msa0372550:CDS
TCTGCAGCCCATCTTGTTGG+TGG 0.532193 3_1:-71126380 None:intergenic
TGTGGTATAGCTGAACCATC+TGG 0.549247 3_1:+71125177 Msa0372550:CDS
ACTGGGTCGTCTTCAAATGA+AGG 0.561598 3_1:-71132520 None:intergenic
CTGGCTAGTTGGTCCTTCTG+AGG 0.564292 3_1:+71126436 Msa0372550:CDS
AGTAACAAAATCACCTCAGA+AGG 0.568318 3_1:-71126449 None:intergenic
AGTATACACTAATTCTGTCA+TGG 0.578832 3_1:-71132723 None:intergenic
AAAGGAGCAGGTTCACCAGA+TGG 0.579959 3_1:-71125192 None:intergenic
GTCGTCTTCAAATGAAGGCG+GGG 0.581705 3_1:-71132515 None:intergenic
TTTGGTGGAGTTATTAGCTG+AGG 0.595601 3_1:-71125114 None:intergenic
GCAAGATGAAAGCCAAAGGC+CGG 0.597747 3_1:+71132940 Msa0372550:three_prime_UTR
CTGGAGAACAGTGGATGTGT+TGG 0.601316 3_1:+71132233 Msa0372550:CDS
TGTCATGGAAAATTATCCAA+AGG 0.620810 3_1:-71132708 None:intergenic
GCAACAGCAAGTTGTTCGTG+AGG 0.628043 3_1:+71125422 Msa0372550:CDS
CGAAAAGAGTAATGTTGCGT+CGG 0.630829 3_1:+71125388 Msa0372550:CDS
ATGTGCAAGATGAAAGCCAA+AGG 0.633519 3_1:+71132936 Msa0372550:three_prime_UTR
TTCAGCTATACCACAACGGA+TGG 0.634641 3_1:-71125169 None:intergenic
TTCAGGTACCTGGAGAACAG+TGG 0.643237 3_1:+71132224 Msa0372550:intron
GGGTCGTCTTCAAATGAAGG+CGG 0.644771 3_1:-71132517 None:intergenic
CCACCAAAATATGCTCCAAG+AGG 0.652709 3_1:+71125129 Msa0372550:CDS
TTACATATATCAGCATAGCA+AGG 0.671867 3_1:-71132553 None:intergenic
CAGAAGGACCAACTAGCCAG+TGG 0.676589 3_1:-71126433 None:intergenic
GCTACTGCTACCATCCGTTG+TGG 0.697016 3_1:+71125159 Msa0372550:CDS
ATGGTTCAGCTATACCACAA+CGG 0.757452 3_1:-71125173 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAGACTAATAAAATAAAA+GGG + chr3_1:71128228-71128247 Msa0372550:intron 10.0%
!! TTTAAAAGAAAATAGAAAAA+AGG + chr3_1:71128430-71128449 Msa0372550:intron 10.0%
!!! AAAATTAATTGACTAATTTT+TGG + chr3_1:71128884-71128903 Msa0372550:intron 10.0%
!!! TGAGAAAAATATATTTTTAT+CGG - chr3_1:71129593-71129612 None:intergenic 10.0%
!! ATAAAAATTCTATATAAATC+TGG + chr3_1:71130292-71130311 Msa0372550:intron 10.0%
!! TTTAGACTAATAAAATAAAA+GGG + chr3_1:71128228-71128247 Msa0372550:intron 10.0%
!! TTAAAAAATCCAAAAAAAAT+TGG - chr3_1:71132396-71132415 None:intergenic 10.0%
!! TAATGAAATATAAGCAAAAA+TGG - chr3_1:71125878-71125897 None:intergenic 15.0%
!!! TTTTTGCTTATATTTCATTA+TGG + chr3_1:71125878-71125897 Msa0372550:intron 15.0%
!!! TGTGAAAACTTTTTATATAT+AGG + chr3_1:71126239-71126258 Msa0372550:intron 15.0%
!! AGCAATATAAATTACATAAT+TGG - chr3_1:71126487-71126506 None:intergenic 15.0%
!! ACATTTGCAAAAAAAATTTA+AGG - chr3_1:71126555-71126574 None:intergenic 15.0%
!!! AGTAAAAACGTTTTATATAT+TGG + chr3_1:71126710-71126729 Msa0372550:intron 15.0%
!! TATGTTAATAAGAATAATCA+AGG + chr3_1:71127435-71127454 Msa0372550:intron 15.0%
!! ATGTTAATAAGAATAATCAA+GGG + chr3_1:71127436-71127455 Msa0372550:intron 15.0%
!!! GTTTTATTGTTTGAAAAAAT+AGG + chr3_1:71127915-71127934 Msa0372550:intron 15.0%
!! GTTTAGACTAATAAAATAAA+AGG + chr3_1:71128227-71128246 Msa0372550:intron 15.0%
!!! TTTAAACTTTTGAAATATGT+GGG - chr3_1:71128416-71128435 None:intergenic 15.0%
!!! TTTTAAACTTTTGAAATATG+TGG - chr3_1:71128417-71128436 None:intergenic 15.0%
!! TATTTGTAGATTTATTATAC+AGG + chr3_1:71129265-71129284 Msa0372550:intron 15.0%
!! ATGAAATATATTAAGAAAGT+CGG - chr3_1:71129440-71129459 None:intergenic 15.0%
!! TATGTATAGATTTATTATAC+AGG + chr3_1:71129517-71129536 Msa0372550:intron 15.0%
!! ATTGTATTATTTGAATACAA+TGG + chr3_1:71129635-71129654 Msa0372550:intron 15.0%
!! TATTATACTTATATTCTTTG+AGG - chr3_1:71129706-71129725 None:intergenic 15.0%
!!! ATAGAATTTTTATTTTCTTG+TGG - chr3_1:71130285-71130304 None:intergenic 15.0%
!! TATGTTAATAAGAATAATCA+AGG + chr3_1:71127435-71127454 Msa0372550:intron 15.0%
!! ATGTTAATAAGAATAATCAA+GGG + chr3_1:71127436-71127455 Msa0372550:intron 15.0%
!!! GTTTTATTGTTAGAAAAAAT+AGG + chr3_1:71131452-71131471 Msa0372550:intron 15.0%
!! GTTTAGACTAATAAAATAAA+AGG + chr3_1:71128227-71128246 Msa0372550:intron 15.0%
!!! ATATTTTTTTTTTCTTGTTC+AGG + chr3_1:71132207-71132226 Msa0372550:intron 15.0%
!!! GTTAGAATATATAAATCTTT+TGG - chr3_1:71132612-71132631 None:intergenic 15.0%
!! TATTGTAATATATTTGTCAA+AGG + chr3_1:71132784-71132803 Msa0372550:three_prime_UTR 15.0%
!! AAAAAAAAGAAGGAAAAGAA+AGG + chr3_1:71125318-71125337 Msa0372550:CDS 20.0%
!!! AAAATAAAGTCAAACAGTTT+TGG - chr3_1:71125624-71125643 None:intergenic 20.0%
!! ACAAAATTGAATGATATGAA+AGG - chr3_1:71126072-71126091 None:intergenic 20.0%
!! TACATATTTCAAACTAATAC+AGG - chr3_1:71126279-71126298 None:intergenic 20.0%
!!! AGTTTGAAATATGTACATTA+TGG + chr3_1:71126284-71126303 Msa0372550:CDS 20.0%
!! TTAAAAACGACTAAAAATCA+AGG - chr3_1:71126904-71126923 None:intergenic 20.0%
!!! TTTCTATCTGAAACTTTATA+AGG + chr3_1:71127094-71127113 Msa0372550:intron 20.0%
!! TTAGATTATTTGTATGTACT+AGG + chr3_1:71127227-71127246 Msa0372550:intron 20.0%
!!! TATTTGTGTGTTGTTAAATT+AGG + chr3_1:71127358-71127377 Msa0372550:intron 20.0%
!!! ACTAACAAGAATATATTTTC+AGG + chr3_1:71127706-71127725 Msa0372550:intron 20.0%
!!! TATATGAATAGATTTTCCAT+AGG - chr3_1:71127761-71127780 None:intergenic 20.0%
!!! TTAAACTTTTGAAATATGTG+GGG - chr3_1:71128415-71128434 None:intergenic 20.0%
!! ATAGACTTTGATAAATATTG+AGG - chr3_1:71129153-71129172 None:intergenic 20.0%
!!! TACAATTACTTTTCTTATTG+TGG - chr3_1:71129322-71129341 None:intergenic 20.0%
!!! ACATTTTGATTTATTCTCAT+TGG + chr3_1:71129341-71129360 Msa0372550:intron 20.0%
!! ATATGAGATTATATGCATAT+TGG - chr3_1:71129877-71129896 None:intergenic 20.0%
!!! ATTATGATAATGACATATGA+GGG - chr3_1:71130045-71130064 None:intergenic 20.0%
!!! AATTATGATAATGACATATG+AGG - chr3_1:71130046-71130065 None:intergenic 20.0%
!!! TAAGCTTTTCAAAATTAAAC+TGG - chr3_1:71130223-71130242 None:intergenic 20.0%
!! ATAAATTATAGAAACATGAC+AGG - chr3_1:71130384-71130403 None:intergenic 20.0%
!!! TATTATATCTCTAGAAGTTT+TGG - chr3_1:71130568-71130587 None:intergenic 20.0%
!! TGTTTACCTCAATAATTTAT+TGG + chr3_1:71130607-71130626 Msa0372550:intron 20.0%
!! AAGTATAAAAGATCTAAAAG+TGG - chr3_1:71130807-71130826 None:intergenic 20.0%
!!! AATCTTAAGGATTTTCTTAA+TGG - chr3_1:71130884-71130903 None:intergenic 20.0%
!! CTAATTTAACAACAATCTTA+AGG - chr3_1:71130897-71130916 None:intergenic 20.0%
!!! CTTAAGATTGTTGTTAAATT+AGG + chr3_1:71130895-71130914 Msa0372550:intron 20.0%
!!! ACTAACAAGAATATATTTTC+AGG + chr3_1:71127706-71127725 Msa0372550:intron 20.0%
!!! TATATGAATAGATTTTCCAT+AGG - chr3_1:71127761-71127780 None:intergenic 20.0%
!! ATCAACAAAAATTCATTAGA+AGG - chr3_1:71132180-71132199 None:intergenic 20.0%
!! TTCATTAGTGAAAAAATCTT+GGG - chr3_1:71132288-71132307 None:intergenic 20.0%
!! ATTCATTAGTGAAAAAATCT+TGG - chr3_1:71132289-71132308 None:intergenic 20.0%
!!! GATTTTTTCACTAATGAATT+TGG + chr3_1:71132290-71132309 Msa0372550:CDS 20.0%
!! TTCTCATTTGTTTGTAATAT+TGG - chr3_1:71132820-71132839 None:intergenic 20.0%
!! TCTCTTTTATGTTTCTTTCA+AGG + chr3_1:71125505-71125524 Msa0372550:intron 25.0%
! GATATTGTTGAATTATCTAC+TGG + chr3_1:71125527-71125546 Msa0372550:intron 25.0%
!! TTAAGTTGTTTATCGAAACA+AGG + chr3_1:71125698-71125717 Msa0372550:intron 25.0%
! TTGCTTATATTTCATTATGG+AGG + chr3_1:71125881-71125900 Msa0372550:intron 25.0%
! TGCTTATATTTCATTATGGA+GGG + chr3_1:71125882-71125901 Msa0372550:intron 25.0%
!!! AATATGAATCTTTTGACTGA+AGG + chr3_1:71126311-71126330 Msa0372550:CDS 25.0%
! TAAGCAAACACTAAATTGAT+AGG - chr3_1:71126511-71126530 None:intergenic 25.0%
!! CGTTTTATATATTGGAAGTT+AGG + chr3_1:71126718-71126737 Msa0372550:intron 25.0%
! TTGGACAATATTACATATCT+TGG - chr3_1:71126813-71126832 None:intergenic 25.0%
!! ATTTTAAACCAAACTTCAGA+GGG - chr3_1:71126961-71126980 None:intergenic 25.0%
! TCATGTGTGAAAACAAAAAA+TGG + chr3_1:71127129-71127148 Msa0372550:intron 25.0%
! TTATAGAAGTGGAGATAAAT+GGG + chr3_1:71127250-71127269 Msa0372550:intron 25.0%
!!! TCTACCTGCATTTTTTTATA+TGG - chr3_1:71127296-71127315 None:intergenic 25.0%
! TTTGATGTTGTTGTATAGTT+AGG + chr3_1:71127481-71127500 Msa0372550:intron 25.0%
!! ACAAATCTTGAAAGTTGATT+CGG - chr3_1:71127557-71127576 None:intergenic 25.0%
!! GTTTTCCTATATCAAGAAAA+TGG + chr3_1:71127833-71127852 Msa0372550:intron 25.0%
!!! ACATTTTAGCTTTAGTAGTA+CGG - chr3_1:71127865-71127884 None:intergenic 25.0%
! AACCAAGTCAACAAAAATTA+AGG + chr3_1:71128057-71128076 Msa0372550:intron 25.0%
! ATGTGTACAAGTAAGTTATA+AGG + chr3_1:71128102-71128121 Msa0372550:intron 25.0%
! TTTAATGTACCAAGTCAAAA+GGG - chr3_1:71128170-71128189 None:intergenic 25.0%
! ATGTGCTCAAAGTAATTATT+AGG + chr3_1:71128198-71128217 Msa0372550:intron 25.0%
! TGTGCTCAAAGTAATTATTA+GGG + chr3_1:71128199-71128218 Msa0372550:intron 25.0%
!!! TAAACTTTTGAAATATGTGG+GGG - chr3_1:71128414-71128433 None:intergenic 25.0%
! TACTTAACATACAATGAAGT+TGG + chr3_1:71128530-71128549 Msa0372550:intron 25.0%
! ATGAATTTCATATCCCATAT+GGG - chr3_1:71128784-71128803 None:intergenic 25.0%
! AATGAATTTCATATCCCATA+TGG - chr3_1:71128785-71128804 None:intergenic 25.0%
! ACTCGAAATTAATAAGTGAT+GGG - chr3_1:71128989-71129008 None:intergenic 25.0%
! AATAAATTTGTGTACATCGA+GGG - chr3_1:71129028-71129047 None:intergenic 25.0%
! AAATAAATTTGTGTACATCG+AGG - chr3_1:71129029-71129048 None:intergenic 25.0%
! ACAAATTTATTTCATCCCAA+GGG + chr3_1:71129037-71129056 Msa0372550:intron 25.0%
!!! ATTGCATTATTTTGATGCAA+TGG + chr3_1:71129385-71129404 Msa0372550:intron 25.0%
!! AGTTATATTTTCTCAATGTG+GGG - chr3_1:71129496-71129515 None:intergenic 25.0%
!! GAGTTATATTTTCTCAATGT+GGG - chr3_1:71129497-71129516 None:intergenic 25.0%
!! AGAGTTATATTTTCTCAATG+TGG - chr3_1:71129498-71129517 None:intergenic 25.0%
!!! ATCGGATTTATTTTTCACTT+TGG - chr3_1:71129575-71129594 None:intergenic 25.0%
!! TTTTATCAACAAGTGAGTTT+TGG - chr3_1:71130351-71130370 None:intergenic 25.0%
! ATATAGAAACTATTCCAAAC+AGG + chr3_1:71130481-71130500 Msa0372550:intron 25.0%
! TAGAGATATAATAAAGTGCA+AGG + chr3_1:71130575-71130594 Msa0372550:intron 25.0%
! AGAGATATAATAAAGTGCAA+GGG + chr3_1:71130576-71130595 Msa0372550:intron 25.0%
! TTTGATGTTGTTGTATAGTT+AGG + chr3_1:71127481-71127500 Msa0372550:intron 25.0%
!! ACAAATCTTGAAAGTTGATT+CGG - chr3_1:71127557-71127576 None:intergenic 25.0%
!! GTTTTCCTATATCAAGAAAA+TGG + chr3_1:71127833-71127852 Msa0372550:intron 25.0%
!!! ACATTTTAGCTTTAGTAGTA+CGG - chr3_1:71127865-71127884 None:intergenic 25.0%
! AACCAAGTCAACAAAAATTA+AGG + chr3_1:71128057-71128076 Msa0372550:intron 25.0%
! ATGTGTACAAGTAAGTTATA+AGG + chr3_1:71128102-71128121 Msa0372550:intron 25.0%
! TTTAATGTACCAAGTCAAAA+GGG - chr3_1:71128170-71128189 None:intergenic 25.0%
! ATGTGCTCAAAGTAATTATT+AGG + chr3_1:71128198-71128217 Msa0372550:intron 25.0%
! TGTGCTCAAAGTAATTATTA+GGG + chr3_1:71128199-71128218 Msa0372550:intron 25.0%
! ATACTTGGAATCATTGTTAA+TGG - chr3_1:71132320-71132339 None:intergenic 25.0%
!!! TATGACTGACCAATTTTTTT+TGG + chr3_1:71132384-71132403 Msa0372550:intron 25.0%
!!! AAATCTTTTGGTTGATTGAA+TGG - chr3_1:71132600-71132619 None:intergenic 25.0%
!! CAATGACAGTATTTTTGAGA+AGG + chr3_1:71125233-71125252 Msa0372550:CDS 30.0%
!! TTTTTAGCATTCCCTATTAC+AGG - chr3_1:71125303-71125322 None:intergenic 30.0%
AGGGAATGCTAAAAAAAAGA+AGG + chr3_1:71125308-71125327 Msa0372550:CDS 30.0%
AAAAGAAGGAAAAGAAAGGT+TGG + chr3_1:71125322-71125341 Msa0372550:CDS 30.0%
! GTATGATTATGAGAGTTTTG+TGG + chr3_1:71125359-71125378 Msa0372550:CDS 30.0%
TTGTGACAATGTTTGTAAGA+AGG + chr3_1:71125556-71125575 Msa0372550:intron 30.0%
! CTTTTGCCTATATTTCATTC+TGG - chr3_1:71125814-71125833 None:intergenic 30.0%
GAATGATATGAAAGGAGTAA+TGG - chr3_1:71126064-71126083 None:intergenic 30.0%
!! CAATTTTGTTGACTATGTAG+TGG + chr3_1:71126083-71126102 Msa0372550:intron 30.0%
! TTTGGAACTTTGATTTCAGA+AGG + chr3_1:71126125-71126144 Msa0372550:intron 30.0%
TAACTACGTTATTGCAGTTT+AGG + chr3_1:71126348-71126367 Msa0372550:CDS 30.0%
AATTATTTCCACCAACAAGA+TGG + chr3_1:71126372-71126391 Msa0372550:CDS 30.0%
ATTATTTCCACCAACAAGAT+GGG + chr3_1:71126373-71126392 Msa0372550:CDS 30.0%
TCAATCCATTTATTTGTGAG+TGG + chr3_1:71126615-71126634 Msa0372550:intron 30.0%
ATTTACCACCATTTGAAAAC+CGG - chr3_1:71126647-71126666 None:intergenic 30.0%
!! TACAAGTATTTTTGCTTTCC+CGG - chr3_1:71126673-71126692 None:intergenic 30.0%
CTAAAAATCAAGGAAATGAG+TGG - chr3_1:71126894-71126913 None:intergenic 30.0%
! CATTTTAAACCAAACTTCAG+AGG - chr3_1:71126962-71126981 None:intergenic 30.0%
! GTAACTCAACCTTTTTGAAT+TGG + chr3_1:71127021-71127040 Msa0372550:intron 30.0%
! ATGCCTTTCATTTTACTCAT+GGG + chr3_1:71127045-71127064 Msa0372550:intron 30.0%
TATGTACTAGGTTATAGAAG+TGG + chr3_1:71127239-71127258 Msa0372550:intron 30.0%
GTTATAGAAGTGGAGATAAA+TGG + chr3_1:71127249-71127268 Msa0372550:intron 30.0%
TATAGAAGTGGAGATAAATG+GGG + chr3_1:71127251-71127270 Msa0372550:intron 30.0%
GTGTCCATATAAAAAAATGC+AGG + chr3_1:71127289-71127308 Msa0372550:intron 30.0%
!! AGATTTCATGTCTCTAAGAT+TGG + chr3_1:71127313-71127332 Msa0372550:intron 30.0%
ATTCGGTAACAGATTTGATT+TGG - chr3_1:71127540-71127559 None:intergenic 30.0%
GTTTAAACTAAAATCCCTCT+TGG - chr3_1:71127804-71127823 None:intergenic 30.0%
! CAGTACCATTTTCTTGATAT+AGG - chr3_1:71127841-71127860 None:intergenic 30.0%
!!! CATTTTAGCTTTAGTAGTAC+GGG - chr3_1:71127864-71127883 None:intergenic 30.0%
TTTCCATCTATAAACAAGCA+AGG - chr3_1:71127889-71127908 None:intergenic 30.0%
GCTTGTTTATAGATGGAAAT+TGG + chr3_1:71127890-71127909 Msa0372550:intron 30.0%
!! CTCCTTAATTTTTGTTGACT+TGG - chr3_1:71128062-71128081 None:intergenic 30.0%
CTTTAATGTACCAAGTCAAA+AGG - chr3_1:71128171-71128190 None:intergenic 30.0%
AAATAGAAAAAAGGACTTCC+TGG + chr3_1:71128439-71128458 Msa0372550:intron 30.0%
AATAGAAAAAAGGACTTCCT+GGG + chr3_1:71128440-71128459 Msa0372550:intron 30.0%
!! AAGTATTATCATTCTAGAGC+TGG - chr3_1:71128515-71128534 None:intergenic 30.0%
! TAACATACGTCAAGTGATTT+TGG - chr3_1:71128574-71128593 None:intergenic 30.0%
CACTCGAAATTAATAAGTGA+TGG - chr3_1:71128990-71129009 None:intergenic 30.0%
CATCACTTATTAATTTCGAG+TGG + chr3_1:71128988-71129007 Msa0372550:intron 30.0%
ATAAATTTGTGTACATCGAG+GGG - chr3_1:71129027-71129046 None:intergenic 30.0%
CACAAATTTATTTCATCCCA+AGG + chr3_1:71129036-71129055 Msa0372550:intron 30.0%
CAAATTTATTTCATCCCAAG+GGG + chr3_1:71129038-71129057 Msa0372550:intron 30.0%
! GTTATATTTTCTCAATGTGG+GGG - chr3_1:71129495-71129514 None:intergenic 30.0%
AAATATAATTGCACCAGACA+AGG + chr3_1:71129827-71129846 Msa0372550:intron 30.0%
! TAGTTTGAATGTGCATGTTT+TGG - chr3_1:71129958-71129977 None:intergenic 30.0%
CTAACTCTATCTTAATGACA+CGG + chr3_1:71130095-71130114 Msa0372550:intron 30.0%
CACATGTTTACACAAATTGA+AGG + chr3_1:71130165-71130184 Msa0372550:intron 30.0%
TTGAGGCCAATAAATTATTG+AGG - chr3_1:71130616-71130635 None:intergenic 30.0%
!! TATGACATTCACTTTTAAGC+AGG - chr3_1:71130654-71130673 None:intergenic 30.0%
TACATGTATGTATCTGATGA+AGG - chr3_1:71130689-71130708 None:intergenic 30.0%
TGATTGAGGATTATGCTAAT+TGG - chr3_1:71130729-71130748 None:intergenic 30.0%
TGAAGTGATTAAGATGATTG+AGG - chr3_1:71130743-71130762 None:intergenic 30.0%
ATTCGGTAACAGATTTGATT+TGG - chr3_1:71127540-71127559 None:intergenic 30.0%
GTTTAAACTAAAATCCCTCT+TGG - chr3_1:71127804-71127823 None:intergenic 30.0%
! CAGTACCATTTTCTTGATAT+AGG - chr3_1:71127841-71127860 None:intergenic 30.0%
!!! CATTTTAGCTTTAGTAGTAC+GGG - chr3_1:71127864-71127883 None:intergenic 30.0%
TTTCCATCTATAAACAAGCA+AGG - chr3_1:71127889-71127908 None:intergenic 30.0%
GCTTGTTTATAGATGGAAAT+TGG + chr3_1:71127890-71127909 Msa0372550:intron 30.0%
!! CTCCTTAATTTTTGTTGACT+TGG - chr3_1:71128062-71128081 None:intergenic 30.0%
CTTTAATGTACCAAGTCAAA+AGG - chr3_1:71128171-71128190 None:intergenic 30.0%
CCTAAAAAAATAACCACTGA+TGG - chr3_1:71132024-71132043 None:intergenic 30.0%
!!! CCATCAGTGGTTATTTTTTT+AGG + chr3_1:71132021-71132040 Msa0372550:intron 30.0%
ACTAATCTTTGCATTGCTTA+TGG + chr3_1:71132154-71132173 Msa0372550:intron 30.0%
TTAGTGAAAAAATCTTGGGT+AGG - chr3_1:71132284-71132303 None:intergenic 30.0%
ATGAGTTGTGATATGGTTTA+TGG + chr3_1:71132487-71132506 Msa0372550:CDS 30.0%
TTACATATATCAGCATAGCA+AGG - chr3_1:71132556-71132575 None:intergenic 30.0%
TTGATTGAATGGAACACAAA+AGG - chr3_1:71132589-71132608 None:intergenic 30.0%
! CTAACACAAAAATAACTTGC+AGG + chr3_1:71132627-71132646 Msa0372550:intron 30.0%
TGTCATGGAAAATTATCCAA+AGG - chr3_1:71132711-71132730 None:intergenic 30.0%
AGTATACACTAATTCTGTCA+TGG - chr3_1:71132726-71132745 None:intergenic 30.0%
TTCTCATGATTTCTACTTTG+AGG + chr3_1:71132752-71132771 Msa0372550:three_prime_UTR 30.0%
! TTTCCTCTTGGAGCATATTT+TGG - chr3_1:71125135-71125154 None:intergenic 35.0%
AAATATGCTCCAAGAGGAAA+TGG + chr3_1:71125135-71125154 Msa0372550:CDS 35.0%
! TAACGTGTCTTTTGTCCTAA+AGG - chr3_1:71125213-71125232 None:intergenic 35.0%
! GACTTTGTTTGCACGAAAAA+TGG + chr3_1:71125263-71125282 Msa0372550:CDS 35.0%
! AGAAAGGTTGGTTGGATATT+TGG + chr3_1:71125334-71125353 Msa0372550:CDS 35.0%
! GAAAGGTTGGTTGGATATTT+GGG + chr3_1:71125335-71125354 Msa0372550:CDS 35.0%
CTTAACTATGCATCTCTTTC+TGG - chr3_1:71125750-71125769 None:intergenic 35.0%
TGCCTATATTTCATTCTGGT+GGG - chr3_1:71125810-71125829 None:intergenic 35.0%
TTGCCTATATTTCATTCTGG+TGG - chr3_1:71125811-71125830 None:intergenic 35.0%
TTAGCAGACCTTCTATAAAG+AGG + chr3_1:71125911-71125930 Msa0372550:intron 35.0%
TAGCAGACCTTCTATAAAGA+GGG + chr3_1:71125912-71125931 Msa0372550:intron 35.0%
!! ATCTCTTTGGAGTTGTCATT+AGG + chr3_1:71125944-71125963 Msa0372550:intron 35.0%
TGTCCTGCATTTGACAATTT+AGG + chr3_1:71125986-71126005 Msa0372550:intron 35.0%
AGTAACAAAATCACCTCAGA+AGG - chr3_1:71126452-71126471 None:intergenic 35.0%
! GCTTAACTTCATAAGAGCAT+TGG + chr3_1:71126526-71126545 Msa0372550:intron 35.0%
TGCAAATGTTCTGCATTTCA+AGG + chr3_1:71126566-71126585 Msa0372550:intron 35.0%
TTGCAGAGCTGCATAATATT+AGG + chr3_1:71126862-71126881 Msa0372550:intron 35.0%
TGCAGAGCTGCATAATATTA+GGG + chr3_1:71126863-71126882 Msa0372550:intron 35.0%
GTGAGAGTTACAAAATGTCT+TGG - chr3_1:71126936-71126955 None:intergenic 35.0%
! AAAGGCATGCCAATTCAAAA+AGG - chr3_1:71127033-71127052 None:intergenic 35.0%
! CATGCCTTTCATTTTACTCA+TGG + chr3_1:71127044-71127063 Msa0372550:intron 35.0%
CATCCCATGAGTAAAATGAA+AGG - chr3_1:71127051-71127070 None:intergenic 35.0%
! TAGGTCTAAGATACAACTCT+GGG - chr3_1:71127742-71127761 None:intergenic 35.0%
! ATAGGTCTAAGATACAACTC+TGG - chr3_1:71127743-71127762 None:intergenic 35.0%
AGAGTTGTATCTTAGACCTA+TGG + chr3_1:71127742-71127761 Msa0372550:intron 35.0%
TGAACCATAGAAAAACCAAG+AGG + chr3_1:71127786-71127805 Msa0372550:intron 35.0%
GAACCATAGAAAAACCAAGA+GGG + chr3_1:71127787-71127806 Msa0372550:intron 35.0%
!! AATCCCTCTTGGTTTTTCTA+TGG - chr3_1:71127793-71127812 None:intergenic 35.0%
ATCACTCGTAGCAGAAAAAT+AGG + chr3_1:71128130-71128149 Msa0372550:intron 35.0%
!! ATTGTACATCCCTTTTGACT+TGG + chr3_1:71128158-71128177 Msa0372550:intron 35.0%
AATCACTTGACGTATGTTAG+CGG + chr3_1:71128575-71128594 Msa0372550:intron 35.0%
AAATCATACACCACCCATAT+GGG + chr3_1:71128768-71128787 Msa0372550:intron 35.0%
AATTTCATATCCCATATGGG+TGG - chr3_1:71128781-71128800 None:intergenic 35.0%
ACCCATATGAACCTTATTCA+TGG + chr3_1:71128938-71128957 Msa0372550:intron 35.0%
CCCATGAATAAGGTTCATAT+GGG - chr3_1:71128942-71128961 None:intergenic 35.0%
CCCATATGAACCTTATTCAT+GGG + chr3_1:71128939-71128958 Msa0372550:intron 35.0%
TCCCATGAATAAGGTTCATA+TGG - chr3_1:71128943-71128962 None:intergenic 35.0%
TGTTTGTAAACTACCTTGTC+TGG - chr3_1:71129843-71129862 None:intergenic 35.0%
TTGTGTAAACATGTGCTATG+TGG - chr3_1:71130160-71130179 None:intergenic 35.0%
ATTCCAAACAGGAATATGAG+TGG + chr3_1:71130492-71130511 Msa0372550:intron 35.0%
! GTTTTCTGATTGATCGAGTA+TGG - chr3_1:71130766-71130785 None:intergenic 35.0%
TCGATCAATCAGAAAACTAG+AGG + chr3_1:71130769-71130788 Msa0372550:intron 35.0%
GTTCTTCTTTGTACGAATCA+TGG + chr3_1:71130827-71130846 Msa0372550:intron 35.0%
! TAGGTCTAAGATACAACTCT+GGG - chr3_1:71127742-71127761 None:intergenic 35.0%
! ATAGGTCTAAGATACAACTC+TGG - chr3_1:71127743-71127762 None:intergenic 35.0%
AGAGTTGTATCTTAGACCTA+TGG + chr3_1:71127742-71127761 Msa0372550:intron 35.0%
TGAACCATAGAAAAACCAAG+AGG + chr3_1:71127786-71127805 Msa0372550:intron 35.0%
GAACCATAGAAAAACCAAGA+GGG + chr3_1:71127787-71127806 Msa0372550:intron 35.0%
!! AATCCCTCTTGGTTTTTCTA+TGG - chr3_1:71127793-71127812 None:intergenic 35.0%
ATCACTCGTAGCACAAAAAT+AGG + chr3_1:71131667-71131686 Msa0372550:intron 35.0%
!! ATTGTACATCCCTTTTGACT+TGG + chr3_1:71128158-71128177 Msa0372550:intron 35.0%
ATGTTAGTATCCACTATCCA+TGG + chr3_1:71132061-71132080 Msa0372550:intron 35.0%
!!! TTTTTTCTTGTTCAGGTACC+TGG + chr3_1:71132214-71132233 Msa0372550:intron 35.0%
GAAAGACAAGAAGACATACT+TGG - chr3_1:71132335-71132354 None:intergenic 35.0%
TGAAGACATGAGTTGTGATA+TGG + chr3_1:71132480-71132499 Msa0372550:CDS 35.0%
ATTGAATGGAACACAAAAGG+AGG - chr3_1:71132586-71132605 None:intergenic 35.0%
TTAGGACATATACTGGAGTT+TGG - chr3_1:71132666-71132685 None:intergenic 35.0%
TTGTAGCTTAGGACATATAC+TGG - chr3_1:71132673-71132692 None:intergenic 35.0%
TTTGGTGGAGTTATTAGCTG+AGG - chr3_1:71125117-71125136 None:intergenic 40.0%
ATGGTTCAGCTATACCACAA+CGG - chr3_1:71125176-71125195 None:intergenic 40.0%
CATTTGCAGAGCCTGTAATA+GGG + chr3_1:71125289-71125308 Msa0372550:CDS 40.0%
! GAAGGAAAAGAAAGGTTGGT+TGG + chr3_1:71125326-71125345 Msa0372550:CDS 40.0%
CGAAAAGAGTAATGTTGCGT+CGG + chr3_1:71125388-71125407 Msa0372550:CDS 40.0%
AGGTCTAAGTTGTTCGCTTT+AGG + chr3_1:71125718-71125737 Msa0372550:intron 40.0%
TATGCATCTCTTTCTGGATG+AGG - chr3_1:71125744-71125763 None:intergenic 40.0%
!! TGGTGGGAGTATTAAGTATG+AGG - chr3_1:71125794-71125813 None:intergenic 40.0%
CTCCCACCAGAATGAAATAT+AGG + chr3_1:71125805-71125824 Msa0372550:intron 40.0%
CAACTCCAAAGAGATTAGCA+AGG - chr3_1:71125939-71125958 None:intergenic 40.0%
ATTAGGCCTCCACTTATGTT+GGG + chr3_1:71125961-71125980 Msa0372550:intron 40.0%
GTGCCTAAATTGTCAAATGC+AGG - chr3_1:71125992-71126011 None:intergenic 40.0%
AATTGAGCCATGAGAAGGTT+TGG + chr3_1:71126107-71126126 Msa0372550:intron 40.0%
CAAAGTTCCAAACCTTCTCA+TGG - chr3_1:71126117-71126136 None:intergenic 40.0%
GATTTCAGAAGGCTCATAGT+AGG + chr3_1:71126136-71126155 Msa0372550:intron 40.0%
! TCCCAAGTTGGCTATTCATT+TGG + chr3_1:71126198-71126217 Msa0372550:intron 40.0%
CCCAAATGAATAGCCAACTT+GGG - chr3_1:71126202-71126221 None:intergenic 40.0%
! CCCAAGTTGGCTATTCATTT+GGG + chr3_1:71126199-71126218 Msa0372550:intron 40.0%
! CCAAGTTGGCTATTCATTTG+GGG + chr3_1:71126200-71126219 Msa0372550:intron 40.0%
TCGGTCCACTCACAAATAAA+TGG - chr3_1:71126623-71126642 None:intergenic 40.0%
TCAAATGGTGGTAAATCCTC+CGG + chr3_1:71126651-71126670 Msa0372550:intron 40.0%
!! AAGTATTTTTGCTTTCCCGG+AGG - chr3_1:71126670-71126689 None:intergenic 40.0%
! AGATGTTGATAGAGCTGTGT+CGG - chr3_1:71127510-71127529 None:intergenic 40.0%
AACTACGCGGAAAATCCTTA+AGG - chr3_1:71127628-71127647 None:intergenic 40.0%
AGAAGGGTCTGTTAAATCCT+GGG - chr3_1:71127663-71127682 None:intergenic 40.0%
GTGCCTTGCTTGTTTATAGA+TGG + chr3_1:71127883-71127902 Msa0372550:intron 40.0%
GAGCACTCATGAAATAATCC+AGG - chr3_1:71128672-71128691 None:intergenic 40.0%
ACCTATATGAGTGTCAAGTG+GGG - chr3_1:71128726-71128745 None:intergenic 40.0%
CACCTATATGAGTGTCAAGT+GGG - chr3_1:71128727-71128746 None:intergenic 40.0%
TCACCTATATGAGTGTCAAG+TGG - chr3_1:71128728-71128747 None:intergenic 40.0%
CAAATCATACACCACCCATA+TGG + chr3_1:71128767-71128786 Msa0372550:intron 40.0%
!! CTAGACACTGCATTTTTGAG+AGG - chr3_1:71128827-71128846 None:intergenic 40.0%
GATTGGAGATCCCATGAATA+AGG - chr3_1:71128952-71128971 None:intergenic 40.0%
GATCTCCAATCACAAAGGTT+GGG + chr3_1:71128961-71128980 Msa0372550:intron 40.0%
AAGCGACATCACTATCAATG+TGG + chr3_1:71129229-71129248 Msa0372550:intron 40.0%
ACATGTGCTATGTGGATCTT+TGG - chr3_1:71130152-71130171 None:intergenic 40.0%
GGAAAATGTGTGTTGAACCA+TGG - chr3_1:71130330-71130349 None:intergenic 40.0%
TGTCCACTCATATTCCTGTT+TGG - chr3_1:71130498-71130517 None:intergenic 40.0%
GGTAGATGACAGTATGTTTG+AGG - chr3_1:71130633-71130652 None:intergenic 40.0%
! AGATGTTGATAGAGCTGTGT+CGG - chr3_1:71127510-71127529 None:intergenic 40.0%
AACTACGCGGAAAATCCTTA+AGG - chr3_1:71127628-71127647 None:intergenic 40.0%
AGAAGGGTCTGTTAAATCCT+GGG - chr3_1:71127663-71127682 None:intergenic 40.0%
GTGCCTTGCTTGTTTATAGA+TGG + chr3_1:71127883-71127902 Msa0372550:intron 40.0%
AGTCTGGAAAGTCTTGAACA+GGG + chr3_1:71131997-71132016 Msa0372550:intron 40.0%
ATCAGCATAGCAAGGTTGTT+TGG - chr3_1:71132548-71132567 None:intergenic 40.0%
TCTGCTCATGATTGTAGCTT+AGG - chr3_1:71132684-71132703 None:intergenic 40.0%
ATGTGCAAGATGAAAGCCAA+AGG + chr3_1:71132936-71132955 Msa0372550:three_prime_UTR 40.0%
!! CCTCTTGGAGCATATTTTGG+TGG - chr3_1:71125132-71125151 None:intergenic 45.0%
CCACCAAAATATGCTCCAAG+AGG + chr3_1:71125129-71125148 Msa0372550:CDS 45.0%
TTCAGCTATACCACAACGGA+TGG - chr3_1:71125172-71125191 None:intergenic 45.0%
TGTGGTATAGCTGAACCATC+TGG + chr3_1:71125177-71125196 Msa0372550:CDS 45.0%
! GTCTTTTGTCCTAAAGGAGC+AGG - chr3_1:71125207-71125226 None:intergenic 45.0%
CCTATTACAGGCTCTGCAAA+TGG - chr3_1:71125291-71125310 None:intergenic 45.0%
CCATTTGCAGAGCCTGTAAT+AGG + chr3_1:71125288-71125307 Msa0372550:CDS 45.0%
CTTCTTTCTATGCTTCCTCC+AGG + chr3_1:71125447-71125466 Msa0372550:CDS 45.0%
TCTCTAATATCCACCTGAGC+AGG - chr3_1:71125477-71125496 None:intergenic 45.0%
GCAAGGACCCTCTTTATAGA+AGG - chr3_1:71125922-71125941 None:intergenic 45.0%
AGGGTCCTTGCTAATCTCTT+TGG + chr3_1:71125931-71125950 Msa0372550:intron 45.0%
CATTAGGCCTCCACTTATGT+TGG + chr3_1:71125960-71125979 Msa0372550:intron 45.0%
GTGGAAATTGAGCCATGAGA+AGG + chr3_1:71126102-71126121 Msa0372550:intron 45.0%
CAGAAGGCTCATAGTAGGAA+TGG + chr3_1:71126141-71126160 Msa0372550:intron 45.0%
ACTCTTTCAGTGTCCCAAGT+TGG + chr3_1:71126186-71126205 Msa0372550:intron 45.0%
CCCCAAATGAATAGCCAACT+TGG - chr3_1:71126203-71126222 None:intergenic 45.0%
TATTTGTGAGTGGACCGAAC+CGG + chr3_1:71126625-71126644 Msa0372550:intron 45.0%
CCACCATTTGAAAACCGGTT+CGG - chr3_1:71126642-71126661 None:intergenic 45.0%
CAAATGGTGGTAAATCCTCC+GGG + chr3_1:71126652-71126671 Msa0372550:intron 45.0%
TTGTCCAAGTGCTTCCACTT+TGG + chr3_1:71126825-71126844 Msa0372550:intron 45.0%
! TCCACTTTGGAGAGGATTGT+AGG + chr3_1:71126838-71126857 Msa0372550:intron 45.0%
ACCTACAATCCTCTCCAAAG+TGG - chr3_1:71126842-71126861 None:intergenic 45.0%
!! TCTCACAACCCTCTGAAGTT+TGG + chr3_1:71126950-71126969 Msa0372550:intron 45.0%
CTTACTTGCAAGTTGCAAGC+TGG - chr3_1:71127002-71127021 None:intergenic 45.0%
AATGGGGTGAAGCAAAAGAG+TGG + chr3_1:71127267-71127286 Msa0372550:intron 45.0%
AAGGGTCTGTTAAATCCTGG+GGG - chr3_1:71127661-71127680 None:intergenic 45.0%
GAAGGGTCTGTTAAATCCTG+GGG - chr3_1:71127662-71127681 None:intergenic 45.0%
GAGAAGGGTCTGTTAAATCC+TGG - chr3_1:71127664-71127683 None:intergenic 45.0%
TTAACAGACCCTTCTCGATG+TGG + chr3_1:71127668-71127687 Msa0372550:intron 45.0%
CAGTTTGATGCATCACATCC+AGG - chr3_1:71128473-71128492 None:intergenic 45.0%
CTGGATGTGATGCATCAAAC+TGG + chr3_1:71128471-71128490 Msa0372550:intron 45.0%
TGAGATCTTGGCGAAATCTC+TGG - chr3_1:71128694-71128713 None:intergenic 45.0%
TCGCCAAGATCTCATACAAG+CGG + chr3_1:71128700-71128719 Msa0372550:intron 45.0%
TCACACACACACCATAGGAA+AGG + chr3_1:71128851-71128870 Msa0372550:intron 45.0%
CACACACACACCATAGGAAA+GGG + chr3_1:71128852-71128871 Msa0372550:intron 45.0%
TTGTTCTCGTCCCTTTCCTA+TGG - chr3_1:71128865-71128884 None:intergenic 45.0%
CATGGGATCTCCAATCACAA+AGG + chr3_1:71128956-71128975 Msa0372550:intron 45.0%
GGATCTCCAATCACAAAGGT+TGG + chr3_1:71128960-71128979 Msa0372550:intron 45.0%
TTGTGTACATCGAGGGGATT+GGG - chr3_1:71129021-71129040 None:intergenic 45.0%
TTTGTGTACATCGAGGGGAT+TGG - chr3_1:71129022-71129041 None:intergenic 45.0%
GCTACTAAACAAAGCCCCTT+GGG - chr3_1:71129055-71129074 None:intergenic 45.0%
AGCTACTAAACAAAGCCCCT+TGG - chr3_1:71129056-71129075 None:intergenic 45.0%
TCTGGCATGCATATCAACCA+TGG + chr3_1:71130310-71130329 Msa0372550:intron 45.0%
GTTTGCATGTGCGTGTGAAA+TGG - chr3_1:71130544-71130563 None:intergenic 45.0%
ACGAATCATGGCGATTGATC+TGG + chr3_1:71130839-71130858 Msa0372550:intron 45.0%
! GGGATTAGCGTATAACTACG+CGG - chr3_1:71131178-71131197 None:intergenic 45.0%
TAGTTATACGCTAATCCCCC+AGG + chr3_1:71131180-71131199 Msa0372550:intron 45.0%
AAGGGTCTGTTAAATCCTGG+GGG - chr3_1:71127661-71127680 None:intergenic 45.0%
GAAGGGTCTGTTAAATCCTG+GGG - chr3_1:71127662-71127681 None:intergenic 45.0%
GAGAAGGGTCTGTTAAATCC+TGG - chr3_1:71127664-71127683 None:intergenic 45.0%
TTAACAGACCCTTCTCGATG+TGG + chr3_1:71127668-71127687 Msa0372550:intron 45.0%
CCTCTATTCCACATCGAGAA+GGG - chr3_1:71131216-71131235 None:intergenic 45.0%
TCCTCTATTCCACATCGAGA+AGG - chr3_1:71131217-71131236 None:intergenic 45.0%
CGAAAGCAATCAATCGAGTC+TGG + chr3_1:71131981-71132000 Msa0372550:intron 45.0%
GAGTCTGGAAAGTCTTGAAC+AGG + chr3_1:71131996-71132015 Msa0372550:intron 45.0%
AGTTAAGCAGACAGCTCGAT+CGG - chr3_1:71132118-71132137 None:intergenic 45.0%
ACTGGGTCGTCTTCAAATGA+AGG - chr3_1:71132523-71132542 None:intergenic 45.0%
AGCAAGGTTGTTTGGAGACT+GGG - chr3_1:71132540-71132559 None:intergenic 45.0%
TAGCAAGGTTGTTTGGAGAC+TGG - chr3_1:71132541-71132560 None:intergenic 45.0%
ATCATGAGCAGACACTCCTT+TGG + chr3_1:71132692-71132711 Msa0372550:exon 45.0%
!! TATAAATAGAAAAATTTATA+CGG - chr3_1:71127186-71127205 None:intergenic 5.0%
GCAGTAGCACCATTTCCTCT+TGG - chr3_1:71125147-71125166 None:intergenic 50.0%
AAAGGAGCAGGTTCACCAGA+TGG - chr3_1:71125195-71125214 None:intergenic 50.0%
TCTGGTGAACCTGCTCCTTT+AGG + chr3_1:71125195-71125214 Msa0372550:CDS 50.0%
GCAACAGCAAGTTGTTCGTG+AGG + chr3_1:71125422-71125441 Msa0372550:CDS 50.0%
GACAGACCCAACATAAGTGG+AGG - chr3_1:71125970-71125989 None:intergenic 50.0%
CAGGACAGACCCAACATAAG+TGG - chr3_1:71125973-71125992 None:intergenic 50.0%
AACTCTGCAGCCCATCTTGT+TGG - chr3_1:71126386-71126405 None:intergenic 50.0%
TGACAGTGCCTTTCTTCCAC+TGG + chr3_1:71126417-71126436 Msa0372550:CDS 50.0%
CCAACTAGCCAGTGGAAGAA+AGG - chr3_1:71126428-71126447 None:intergenic 50.0%
! CCTTTCTTCCACTGGCTAGT+TGG + chr3_1:71126425-71126444 Msa0372550:CDS 50.0%
!! GGACCGAACCGGTTTTCAAA+TGG + chr3_1:71126636-71126655 Msa0372550:intron 50.0%
!! CCGAACCGGTTTTCAAATGG+TGG + chr3_1:71126639-71126658 Msa0372550:intron 50.0%
!! CTCTCCAAAGTGGAAGCACT+TGG - chr3_1:71126832-71126851 None:intergenic 50.0%
! CAAGTGCTTCCACTTTGGAG+AGG + chr3_1:71126830-71126849 Msa0372550:intron 50.0%
TGCTGATCGCACTGTCCTTA+AGG + chr3_1:71127610-71127629 Msa0372550:intron 50.0%
! GGGGTTAGCGTATAACTACG+CGG - chr3_1:71127641-71127660 None:intergenic 50.0%
TAGTTATACGCTAACCCCCC+AGG + chr3_1:71127643-71127662 Msa0372550:intron 50.0%
AGGGTCTGTTAAATCCTGGG+GGG - chr3_1:71127660-71127679 None:intergenic 50.0%
CCTCGATTCCACATCGAGAA+GGG - chr3_1:71127679-71127698 None:intergenic 50.0%
TCCTCGATTCCACATCGAGA+AGG - chr3_1:71127680-71127699 None:intergenic 50.0%
!! GACTTCCTGGGTTAGTATCC+TGG + chr3_1:71128452-71128471 Msa0372550:intron 50.0%
CACATCCAGGATACTAACCC+AGG - chr3_1:71128460-71128479 None:intergenic 50.0%
ACCCCCACATTTCTTGTCGT+TGG + chr3_1:71128615-71128634 Msa0372550:intron 50.0%
GCCAACGACAAGAAATGTGG+GGG - chr3_1:71128619-71128638 None:intergenic 50.0%
CGCCAACGACAAGAAATGTG+GGG - chr3_1:71128620-71128639 None:intergenic 50.0%
GCGCCAACGACAAGAAATGT+GGG - chr3_1:71128621-71128640 None:intergenic 50.0%
AGCGCCAACGACAAGAAATG+TGG - chr3_1:71128622-71128641 None:intergenic 50.0%
ATTTCTTGTCGTTGGCGCTG+TGG + chr3_1:71128623-71128642 Msa0372550:intron 50.0%
AAATAATCCAGGCACGCGCA+CGG - chr3_1:71128661-71128680 None:intergenic 50.0%
GCCCCACTTGACACTCATAT+AGG + chr3_1:71128722-71128741 Msa0372550:intron 50.0%
GCACTTCACACACACACCAT+AGG + chr3_1:71128846-71128865 Msa0372550:intron 50.0%
GGGAACCCAACCTTTGTGAT+TGG - chr3_1:71128969-71128988 None:intergenic 50.0%
TGCTGATCGCACTGTCCTTA+AGG + chr3_1:71127610-71127629 Msa0372550:intron 50.0%
CCCTTCTCGATGTGGAATAG+AGG + chr3_1:71131213-71131232 Msa0372550:intron 50.0%
TCTTGAACAGGGACCATCAG+TGG + chr3_1:71132008-71132027 Msa0372550:intron 50.0%
ATCCACTATCCATGGTCCGA+AGG + chr3_1:71132069-71132088 Msa0372550:intron 50.0%
AACCTTCGGACCATGGATAG+TGG - chr3_1:71132074-71132093 None:intergenic 50.0%
ACTATCCATGGTCCGAAGGT+TGG + chr3_1:71132073-71132092 Msa0372550:intron 50.0%
TTCAGGTACCTGGAGAACAG+TGG + chr3_1:71132224-71132243 Msa0372550:intron 50.0%
CAACACATCCACTGTTCTCC+AGG - chr3_1:71132235-71132254 None:intergenic 50.0%
CTGGAGAACAGTGGATGTGT+TGG + chr3_1:71132233-71132252 Msa0372550:CDS 50.0%
CTTCAAATGAAGGCGGGGTT+TGG - chr3_1:71132513-71132532 None:intergenic 50.0%
GTCGTCTTCAAATGAAGGCG+GGG - chr3_1:71132518-71132537 None:intergenic 50.0%
GGTCGTCTTCAAATGAAGGC+GGG - chr3_1:71132519-71132538 None:intergenic 50.0%
GGGTCGTCTTCAAATGAAGG+CGG - chr3_1:71132520-71132539 None:intergenic 50.0%
GCTACTGCTACCATCCGTTG+TGG + chr3_1:71125159-71125178 Msa0372550:CDS 55.0%
TCTGCAGCCCATCTTGTTGG+TGG - chr3_1:71126383-71126402 None:intergenic 55.0%
CAGAAGGACCAACTAGCCAG+TGG - chr3_1:71126436-71126455 None:intergenic 55.0%
! CTGGCTAGTTGGTCCTTCTG+AGG + chr3_1:71126436-71126455 Msa0372550:CDS 55.0%
CCCTTCTCGATGTGGAATCG+AGG + chr3_1:71127676-71127695 Msa0372550:intron 55.0%
GGGCCGCTTGTATGAGATCT+TGG - chr3_1:71128706-71128725 None:intergenic 55.0%
AAGGTCCAACCTTCGGACCA+TGG - chr3_1:71132081-71132100 None:intergenic 55.0%
AGGGCAGAAGGTCCAACCTT+CGG - chr3_1:71132088-71132107 None:intergenic 55.0%
TGGCGCTGTGGTGCGCTAAT+AGG + chr3_1:71128635-71128654 Msa0372550:intron 60.0%
ATCGGTGAGCTGAGGGCAGA+AGG - chr3_1:71132100-71132119 None:intergenic 60.0%
CAGCTCGATCGGTGAGCTGA+GGG - chr3_1:71132107-71132126 None:intergenic 60.0%
ACAGCTCGATCGGTGAGCTG+AGG - chr3_1:71132108-71132127 None:intergenic 60.0%
TAATAGGCCGTGCGCGTGCC+TGG + chr3_1:71128651-71128670 Msa0372550:intron 65.0%
TCCTCCAGGTGCGCCTGCTC+AGG + chr3_1:71125461-71125480 Msa0372550:intron 70.0%
ACCTGAGCAGGCGCACCTGG+AGG - chr3_1:71125465-71125484 None:intergenic 70.0%
TCCAGGTGCGCCTGCTCAGG+TGG + chr3_1:71125464-71125483 Msa0372550:intron 70.0%
TCCACCTGAGCAGGCGCACC+TGG - chr3_1:71125468-71125487 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 71125087 71132962 71125087 ID=Msa0372550;Name=Msa0372550
chr3_1 mRNA 71125087 71132962 71125087 ID=Msa0372550-mRNA-1;Parent=Msa0372550;Name=Msa0372550-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.5|0.6|1|1|1|5|264|279
chr3_1 exon 71125087 71125468 71125087 ID=Msa0372550-mRNA-1:exon:15615;Parent=Msa0372550-mRNA-1
chr3_1 exon 71126261 71126465 71126261 ID=Msa0372550-mRNA-1:exon:15616;Parent=Msa0372550-mRNA-1
chr3_1 exon 71132229 71132335 71132229 ID=Msa0372550-mRNA-1:exon:15617;Parent=Msa0372550-mRNA-1
chr3_1 exon 71132476 71132571 71132476 ID=Msa0372550-mRNA-1:exon:15618;Parent=Msa0372550-mRNA-1
chr3_1 exon 71132649 71132962 71132649 ID=Msa0372550-mRNA-1:exon:15619;Parent=Msa0372550-mRNA-1
chr3_1 CDS 71125087 71125468 71125087 ID=Msa0372550-mRNA-1:cds;Parent=Msa0372550-mRNA-1
chr3_1 CDS 71126261 71126465 71126261 ID=Msa0372550-mRNA-1:cds;Parent=Msa0372550-mRNA-1
chr3_1 CDS 71132229 71132335 71132229 ID=Msa0372550-mRNA-1:cds;Parent=Msa0372550-mRNA-1
chr3_1 CDS 71132476 71132571 71132476 ID=Msa0372550-mRNA-1:cds;Parent=Msa0372550-mRNA-1
chr3_1 CDS 71132649 71132698 71132649 ID=Msa0372550-mRNA-1:cds;Parent=Msa0372550-mRNA-1
chr3_1 three_prime_UTR 71132699 71132962 71132699 ID=Msa0372550-mRNA-1:three_prime_utr;Parent=Msa0372550-mRNA-1
Gene Sequence

>Msa0372550

ATGGTGGTTCTTAACTTTCAGCTTGTTCCTCAGCTAATAACTCCACCAAAATATGCTCCAAGAGGAAATGGTGCTACTGCTACCATCCGTTGTGGTATAGCTGAACCATCTGGTGAACCTGCTCCTTTAGGACAAAAGACACGTTACAATGACAGTATTTTTGAGAAGGTTTTCATGACTTTGTTTGCACGAAAAATGGAACCATTTGCAGAGCCTGTAATAGGGAATGCTAAAAAAAAGAAGGAAAAGAAAGGTTGGTTGGATATTTGGGAGTATGATTATGAGAGTTTTGTGGATGTGTCGAAAAGAGTAATGTTGCGTCGGTCTCGTTTGCAGCAACAGCAAGTTGTTCGTGAGGTTCTTCTTTCTATGCTTCCTCCAGGAGTCTGCTCTCATGCCTGTATTAGTTTGAAATATGTACATTATGGATGCAATATGAATCTTTTGACTGAAGGAATAAAGTCGCTTTTAACTACGTTATTGCAGTTTAGGAAATTATTTCCACCAACAAGATGGGCTGCAGAGTTTAATGCTGCATTGACAGTGCCTTTCTTCCACTGGCTAGTTGGTCCTTCTGAGGTGATTTTGTACCTGGAGAACAGTGGATGTGTTGGACAGTGTGTTAATATGTGCAAGATTCCTACCCAAGATTTTTTCACTAATGAATTTGGACTTCCATTAACAATGATTCCAAATTTTGAAGACATGAGTTGTGATATGGTTTATGGCCAAACCCCGCCTTCATTTGAAGACGACCCAGTCTCCAAACAACCTTGCTATGCTGATATATGTTCTGTAGCGAATCCAAACTCCAGTATATGTCCTAAGCTACAATCATGA

Protein sequence

>Msa0372550

MVVLNFQLVPQLITPPKYAPRGNGATATIRCGIAEPSGEPAPLGQKTRYNDSIFEKVFMTLFARKMEPFAEPVIGNAKKKKEKKGWLDIWEYDYESFVDVSKRVMLRRSRLQQQQVVREVLLSMLPPGVCSHACISLKYVHYGCNMNLLTEGIKSLLTTLLQFRKLFPPTRWAAEFNAALTVPFFHWLVGPSEVILYLENSGCVGQCVNMCKIPTQDFFTNEFGLPLTMIPNFEDMSCDMVYGQTPPSFEDDPVSKQPCYADICSVANPNSSICPKLQS*