AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0338900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0338900 MtrunA17_Chr2g0326841 98.565 209 3 0 1 209 1 209 2.29e-155 428
Msa0338900 MtrunA17_Chr7g0264181 87.317 205 26 0 3 207 4 208 1.01e-133 374
Msa0338900 MtrunA17_Chr1g0181131 85.990 207 29 0 1 207 1 207 1.16e-133 374
Msa0338900 MtrunA17_Chr4g0028871 89.899 198 20 0 12 209 12 209 1.22e-132 370
Msa0338900 MtrunA17_Chr3g0142491 76.329 207 49 0 1 207 3 209 2.70e-119 337
Msa0338900 MtrunA17_Chr1g0177391 76.410 195 46 0 10 204 6 200 3.18e-114 324
Msa0338900 MtrunA17_Chr1g0151201 69.000 200 60 1 11 208 7 206 4.28e-102 294
Msa0338900 MtrunA17_Chr1g0156401 66.964 112 16 1 40 130 1 112 8.32e-45 145
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0338900 AT2G28305.1 88.945 199 22 0 10 208 5 203 1.48e-132 371
Msa0338900 AT2G37210.1 85.644 202 29 0 7 208 8 209 1.85e-130 366
Msa0338900 AT3G53450.1 84.236 203 32 0 7 209 8 210 1.60e-127 358
Msa0338900 AT2G37210.2 76.106 226 30 1 7 208 8 233 1.42e-124 352
Msa0338900 AT2G28305.3 90.659 182 17 0 10 191 5 186 6.19e-122 343
Msa0338900 AT5G06300.1 79.000 200 42 0 5 204 1 200 6.81e-118 334
Msa0338900 AT5G03270.1 82.796 186 32 0 10 195 16 201 3.01e-113 322
Msa0338900 AT2G35990.1 71.144 201 58 0 5 205 1 201 1.74e-110 315
Msa0338900 AT5G03270.2 82.873 181 31 0 10 190 16 196 5.15e-109 311
Msa0338900 AT4G35190.1 69.458 203 62 0 5 207 1 203 2.91e-105 303
Msa0338900 AT5G11950.1 68.342 199 63 0 10 208 7 205 2.03e-101 292
Msa0338900 AT5G11950.2 68.342 199 63 0 10 208 7 205 2.03e-101 292
Msa0338900 AT5G11950.3 68.342 199 63 0 10 208 7 205 2.03e-101 292
Msa0338900 AT4G35190.2 70.103 194 56 1 5 198 1 192 1.25e-100 290
Msa0338900 AT2G28305.2 92.593 135 10 0 10 144 5 139 7.17e-89 258
Msa0338900 AT2G35990.3 71.812 149 42 0 57 205 1 149 6.91e-80 236
Msa0338900 AT2G35990.2 71.812 149 42 0 57 205 1 149 6.91e-80 236
Msa0338900 AT5G11950.4 68.421 152 48 0 57 208 1 152 3.56e-74 221
Msa0338900 AT5G26140.2 53.061 147 47 1 84 208 6 152 2.49e-45 148
Msa0338900 AT5G26140.1 51.880 133 42 1 98 208 1 133 5.58e-38 129
Msa0338900 AT5G26140.3 56.863 102 44 0 107 208 17 118 1.97e-34 119

Find 65 sgRNAs with CRISPR-Local

Find 444 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAATATTGATCTAGTTTA+TGG 0.105402 2_4:-59585538 Msa0338900:CDS
CTCTCTTGGCATTAGTGTTT+TGG 0.116726 2_4:+59585267 None:intergenic
TGTTTCTACTTTAATTACTA+TGG 0.284874 2_4:+59586284 None:intergenic
GATGGTGGTCGACATGTAAT+TGG 0.286287 2_4:-59585469 Msa0338900:CDS
GTTAATGTAAACTATTGATT+TGG 0.307486 2_4:-59578939 Msa0338900:three_prime_UTR
GTATATATGCTGCAGCTTAC+TGG 0.317998 2_4:-59584319 Msa0338900:intron
AATGATGCTGACTCGTCTAT+AGG 0.325760 2_4:+59586207 None:intergenic
CCAACCTGGTAAGGCTATAA+AGG 0.339119 2_4:+59584222 None:intergenic
ATGATGCTGACTCGTCTATA+GGG 0.353587 2_4:+59586208 None:intergenic
TATTGAACTTGGAAAAGAAT+TGG 0.373481 2_4:-59585941 Msa0338900:intron
AGGAGGCAGCATTGGTTTGA+TGG 0.380464 2_4:-59585515 Msa0338900:CDS
TGGTAACAAAACTAGCTATA+AGG 0.381980 2_4:-59585971 Msa0338900:CDS
CGGTTATATGGTATATATAA+AGG 0.383302 2_4:+59586140 None:intergenic
GGTGTATAAGCGCGGTTATA+TGG 0.386897 2_4:+59586128 None:intergenic
GGAGGCAGCATTGGTTTGAT+GGG 0.391809 2_4:-59585514 Msa0338900:CDS
GCATCAAAGGAAAGCTGAAA+TGG 0.434148 2_4:-59584260 Msa0338900:CDS
TATTTGCATGAAGGTGGGTA+TGG 0.435005 2_4:-59579749 Msa0338900:intron
GAGTTGCCTCCAAGCTAAGC+TGG 0.437628 2_4:-59579121 Msa0338900:CDS
TTTGTCGATGAAAGTCAAAA+AGG 0.444110 2_4:+59579526 None:intergenic
AAATCTTTACCGGTTTATCA+TGG 0.448590 2_4:+59579678 None:intergenic
CAACATAACCTTACCTCTCT+TGG 0.453244 2_4:+59585253 None:intergenic
GTGGGATTGCTGAATGTTGA+TGG 0.455471 2_4:-59579560 Msa0338900:CDS
CCTTTGATATGAGTGGTTGA+TGG 0.456369 2_4:+59586107 None:intergenic
AAGGATGCTGCTATTGAACT+TGG 0.459571 2_4:-59585952 Msa0338900:CDS
ATTTCTCAAGCTGTTTATGA+TGG 0.472010 2_4:-59585487 Msa0338900:CDS
GGTAGAAGATCACAATTTCA+TGG 0.474201 2_4:-59578995 Msa0338900:three_prime_UTR
TTTGAATGAATGGTGAAAGA+GGG 0.481457 2_4:-59586309 None:intergenic
ACAATAATATGGCGAGCTGT+GGG 0.481841 2_4:+59579479 None:intergenic
TTGGTGCAGACACAATAATA+TGG 0.486535 2_4:+59579468 None:intergenic
TTGTTTGTACCAACCTGGTA+AGG 0.495823 2_4:+59584213 None:intergenic
GTTTATGGAGGAGGCAGCAT+TGG 0.498113 2_4:-59585523 Msa0338900:CDS
CACAATAATATGGCGAGCTG+TGG 0.500721 2_4:+59579478 None:intergenic
ACTTGGCATCCATGATAAAC+CGG 0.501203 2_4:-59579687 Msa0338900:intron
GATGCCTTTATAGCCTTACC+AGG 0.517415 2_4:-59584226 Msa0338900:intron
TCTCAAGCTGTTTATGATGG+TGG 0.519302 2_4:-59585484 Msa0338900:CDS
TCTCTCACCTTTGATATGAG+TGG 0.521689 2_4:+59586100 None:intergenic
ATTGATCTAGTTTATGGAGG+AGG 0.523752 2_4:-59585532 Msa0338900:CDS
GACAACTCAAGGAACTACTA+TGG 0.525382 2_4:-59579016 Msa0338900:three_prime_UTR
AGGCAACTCTTTCATGCTGT+GGG 0.528340 2_4:+59579135 None:intergenic
AATTAACAAAGAGAGAAGAA+TGG 0.528377 2_4:-59586058 Msa0338900:intron
GTGATAACATGGGCTCAACT+TGG 0.532726 2_4:-59579704 Msa0338900:CDS
CAGTAGCTGACATGCATCAA+AGG 0.536960 2_4:-59584273 Msa0338900:CDS
GAGGCAGCATTGGTTTGATG+GGG 0.537940 2_4:-59585513 Msa0338900:CDS
ATCGACAAAGCTGTGGAGGA+AGG 0.545903 2_4:-59579512 Msa0338900:CDS
GAGGCAACTCTTTCATGCTG+TGG 0.549574 2_4:+59579134 None:intergenic
ATTTGCATGAAGGTGGGTAT+GGG 0.550161 2_4:-59579748 Msa0338900:intron
GACTTTCATCGACAAAGCTG+TGG 0.562460 2_4:-59579519 Msa0338900:CDS
AGCTCCTTGAGGTGATAACA+TGG 0.564557 2_4:-59579715 Msa0338900:CDS
CAGCTTACTGGTGAAACAGT+AGG 0.570843 2_4:-59584307 Msa0338900:CDS
ATGGTGGTCGACATGTAATT+GGG 0.573816 2_4:-59585468 Msa0338900:intron
AATATTGATCTAGTTTATGG+AGG 0.578824 2_4:-59585535 Msa0338900:CDS
TTGAATGAATGGTGAAAGAG+GGG 0.580105 2_4:-59586308 None:intergenic
AGTTGCCTCCAAGCTAAGCT+GGG 0.587565 2_4:-59579120 Msa0338900:CDS
AACAAACACAGATAAGACAT+TGG 0.598891 2_4:-59586249 Msa0338900:five_prime_UTR
CCATCAACCACTCATATCAA+AGG 0.603610 2_4:-59586107 Msa0338900:five_prime_UTR
GAGCCCATGTTATCACCTCA+AGG 0.614099 2_4:+59579711 None:intergenic
TCAAAATGTGAGACAACTCA+AGG 0.622102 2_4:-59579027 Msa0338900:three_prime_UTR
TTTCATCGACAAAGCTGTGG+AGG 0.624003 2_4:-59579516 Msa0338900:CDS
CAAAACACTAATGCCAAGAG+AGG 0.626831 2_4:-59585266 Msa0338900:intron
GACACTTGAGGAGCTCCTTG+AGG 0.631827 2_4:-59579726 Msa0338900:CDS
GACTCGTCTATAGGGAACCA+AGG 0.651655 2_4:+59586216 None:intergenic
AGGTGGGTATGGGACACTTG+AGG 0.655697 2_4:-59579738 Msa0338900:CDS
CAATAATATGGCGAGCTGTG+GGG 0.681355 2_4:+59579480 None:intergenic
GCTCCTTGAGGTGATAACAT+GGG 0.684486 2_4:-59579714 Msa0338900:CDS
TGGTTGATGGTGTATAAGCG+CGG 0.771566 2_4:+59586120 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATATATATATATATA+TGG - chr2_4:59584726-59584745 Msa0338900:intron 0.0%
!! TATTATATATATATATATAT+GGG - chr2_4:59584727-59584746 Msa0338900:intron 0.0%
!! TATATATATATATATATATA+GGG + chr2_4:59585151-59585170 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG + chr2_4:59585152-59585171 None:intergenic 0.0%
!!! TTTTTACTTATATTTTGTTA+TGG + chr2_4:59579500-59579519 None:intergenic 10.0%
!!! TTGTATTTTGATATATAAAA+AGG - chr2_4:59579595-59579614 Msa0338900:intron 10.0%
!! ATGATAAAGAATATAAAAAA+GGG + chr2_4:59580285-59580304 None:intergenic 10.0%
!!! AAATTAAAGTTTACATTTTA+TGG + chr2_4:59581195-59581214 None:intergenic 10.0%
!!! TAGTGTTTTTATTTTTAATA+AGG - chr2_4:59581641-59581660 Msa0338900:intron 10.0%
!!! AGTGTTTTTATTTTTAATAA+GGG - chr2_4:59581642-59581661 Msa0338900:intron 10.0%
!!! ATGATATCAATATAAATTTT+AGG - chr2_4:59582156-59582175 Msa0338900:intron 10.0%
!!! TTTTTGATTGATTAAAATTT+AGG + chr2_4:59582594-59582613 None:intergenic 10.0%
!! AAAAAAACTTTATTAAAGAT+AGG - chr2_4:59582898-59582917 Msa0338900:intron 10.0%
!!! AAGTTAAAAAAAAATCTTTT+TGG + chr2_4:59582987-59583006 None:intergenic 10.0%
!!! TTTTAACTTATTTACATTAT+AGG - chr2_4:59582998-59583017 Msa0338900:intron 10.0%
!!! GTATTTTTTTAATAATAAAG+AGG - chr2_4:59584195-59584214 Msa0338900:intron 10.0%
!! TCAAAAAAAAAAAAAGATAA+AGG - chr2_4:59584601-59584620 Msa0338900:intron 10.0%
!! TATATATATATATATATAGG+GGG + chr2_4:59585149-59585168 None:intergenic 10.0%
!!! ATAAAAATTTTTGTTTTTGA+AGG - chr2_4:59585579-59585598 Msa0338900:intron 10.0%
!! TTATTCATGATGATAAAATA+AGG + chr2_4:59579279-59579298 None:intergenic 15.0%
!! GATGATAAAGAATATAAAAA+AGG + chr2_4:59580286-59580305 None:intergenic 15.0%
!! AAATATCGACATTTAATATA+TGG + chr2_4:59580556-59580575 None:intergenic 15.0%
!! CTTCTAATATTTGATTAAAT+GGG - chr2_4:59581219-59581238 Msa0338900:intron 15.0%
!! TAAAATGAAAAGAGAAAAAA+AGG + chr2_4:59581552-59581571 None:intergenic 15.0%
!!! TTTTTTTCTCTTTTCATTTT+AGG - chr2_4:59581551-59581570 Msa0338900:intron 15.0%
!! AAAAATAAAAACACTATGAT+TGG + chr2_4:59581637-59581656 None:intergenic 15.0%
!!! TATTTAAAATTTCCTCTTTT+GGG + chr2_4:59581824-59581843 None:intergenic 15.0%
!!! TTATTTAAAATTTCCTCTTT+TGG + chr2_4:59581825-59581844 None:intergenic 15.0%
!!! TGTTGTCAATAATTATTTTA+GGG + chr2_4:59581947-59581966 None:intergenic 15.0%
!!! ATGTTGTCAATAATTATTTT+AGG + chr2_4:59581948-59581967 None:intergenic 15.0%
!! AAAAAAAAACACAAAACTAT+TGG + chr2_4:59583242-59583261 None:intergenic 15.0%
!! ATTTGTCATGTAATAATTAA+TGG + chr2_4:59583416-59583435 None:intergenic 15.0%
!! AAACATCAAAAATAAAGATT+AGG - chr2_4:59583561-59583580 Msa0338900:intron 15.0%
!!! CTTTAAAATAACTTTTTAGT+AGG + chr2_4:59583909-59583928 None:intergenic 15.0%
!! TGTTTATAATAGAAAAACAT+GGG + chr2_4:59584829-59584848 None:intergenic 15.0%
!! TTGTTTATAATAGAAAAACA+TGG + chr2_4:59584830-59584849 None:intergenic 15.0%
!! TGTTTATAATAGAAAAACAT+GGG + chr2_4:59584829-59584848 None:intergenic 15.0%
!! TTGTTTATAATAGAAAAACA+TGG + chr2_4:59584830-59584849 None:intergenic 15.0%
!! AAAGTTTAATAGAGATAAAA+TGG - chr2_4:59585048-59585067 Msa0338900:intron 15.0%
!!! GATGATTGTATATTTTTTTA+AGG + chr2_4:59585278-59585297 None:intergenic 15.0%
!!! AAAAAATTGGTTTCAAAATT+GGG + chr2_4:59585355-59585374 None:intergenic 15.0%
!!! TGTTTCTACTTTAATTACTA+TGG + chr2_4:59578880-59578899 None:intergenic 20.0%
!!! TTATGGAGAGTATATAAATT+AGG + chr2_4:59579483-59579502 None:intergenic 20.0%
!! ATATCATATCATAGGTATAT+AGG + chr2_4:59579554-59579573 None:intergenic 20.0%
!! TAAACATCATATCATATCAT+AGG + chr2_4:59579562-59579581 None:intergenic 20.0%
!!! AGAAATATTGATCTAGTTTA+TGG - chr2_4:59579623-59579642 Msa0338900:intron 20.0%
!! AGTTTGTAAATTTGAACTAT+AGG + chr2_4:59580155-59580174 None:intergenic 20.0%
!! TATATTCTTTATCATCATTG+AGG - chr2_4:59580290-59580309 Msa0338900:intron 20.0%
!! CCATTTAATCAAATATTAGA+AGG + chr2_4:59581221-59581240 None:intergenic 20.0%
!! CCTTCTAATATTTGATTAAA+TGG - chr2_4:59581218-59581237 Msa0338900:intron 20.0%
!! TTATGTGTAATTCATCTTAA+AGG + chr2_4:59581745-59581764 None:intergenic 20.0%
!!! TTGAAATTAGTCATCTTTTT+AGG - chr2_4:59582363-59582382 Msa0338900:intron 20.0%
!!! AAAAACTAAAAAGACTTGTT+TGG - chr2_4:59582471-59582490 Msa0338900:intron 20.0%
!!! AAAACTAAAAAGACTTGTTT+GGG - chr2_4:59582472-59582491 Msa0338900:intron 20.0%
!!! TTGGAATTTTTGAAACTTAA+AGG - chr2_4:59582519-59582538 Msa0338900:intron 20.0%
!!! ATTTGTTTTAGGTTAAAAGA+TGG + chr2_4:59582693-59582712 None:intergenic 20.0%
!!! GGTTAAGTTTTATTTGTTTT+AGG + chr2_4:59582704-59582723 None:intergenic 20.0%
!!! TAAGTTTTATTTCGATCATT+TGG + chr2_4:59582725-59582744 None:intergenic 20.0%
!! CAAAAAAAACACAAAACTAA+CGG - chr2_4:59583142-59583161 Msa0338900:intron 20.0%
!! CTTTGTAAAAATATTGGTAT+TGG + chr2_4:59583106-59583125 None:intergenic 20.0%
!!! TTGTGTTTTTTTTTTAACAG+AGG - chr2_4:59583248-59583267 Msa0338900:intron 20.0%
!!! TGTGTTTTTTTTTTAACAGA+GGG - chr2_4:59583249-59583268 Msa0338900:intron 20.0%
!!! CTTTGAAAAAATATTGGTAT+TGG + chr2_4:59583276-59583295 None:intergenic 20.0%
!!! CTTATCACTTTTCAATTAAT+GGG + chr2_4:59583592-59583611 None:intergenic 20.0%
!!! TCTTATCACTTTTCAATTAA+TGG + chr2_4:59583593-59583612 None:intergenic 20.0%
!! TTAATTGAAAAGTGATAAGA+TGG - chr2_4:59583593-59583612 Msa0338900:intron 20.0%
!!! ATTATATTTCAAGTAACGTT+TGG + chr2_4:59583869-59583888 None:intergenic 20.0%
!! ATCAAAATACCTATTATTGA+AGG + chr2_4:59584028-59584047 None:intergenic 20.0%
!! ATTACGATAAAGTAAAACAA+AGG + chr2_4:59584065-59584084 None:intergenic 20.0%
!! TACTTTAAGTCTTAAGATAA+AGG - chr2_4:59584567-59584586 Msa0338900:intron 20.0%
!!! AAAAAAAGATAAAGGTTTTC+TGG - chr2_4:59584609-59584628 Msa0338900:intron 20.0%
!!! TGTTTTAATAAAGTACAAGT+AGG - chr2_4:59584916-59584935 Msa0338900:intron 20.0%
!! ACAATTAGAGTTAAAAAAGT+TGG - chr2_4:59585182-59585201 Msa0338900:intron 20.0%
!!! GAAAAAATTGGTTTCAAAAT+TGG + chr2_4:59585356-59585375 None:intergenic 20.0%
!! GTACTAGAAATAGAAAAAAT+TGG + chr2_4:59585368-59585387 None:intergenic 20.0%
!!! GCAAATTTTATCTCATAAAA+GGG + chr2_4:59585555-59585574 None:intergenic 20.0%
!!! AGCAAATTTTATCTCATAAA+AGG + chr2_4:59585556-59585575 None:intergenic 20.0%
!!! AAAATTTTTGTTTTTGAAGG+TGG - chr2_4:59585582-59585601 Msa0338900:intron 20.0%
!!! AAATTTTTGTTTTTGAAGGT+GGG - chr2_4:59585583-59585602 Msa0338900:intron 20.0%
!!! AGAATTAGTTTTCATTCTTT+TGG - chr2_4:59585981-59586000 Msa0338900:CDS 20.0%
!!! GTTAATGTAAACTATTGATT+TGG - chr2_4:59586222-59586241 Msa0338900:five_prime_UTR 20.0%
! CGGTTATATGGTATATATAA+AGG + chr2_4:59579024-59579043 None:intergenic 25.0%
! AATTAACAAAGAGAGAAGAA+TGG - chr2_4:59579103-59579122 Msa0338900:CDS 25.0%
! TATTGAACTTGGAAAAGAAT+TGG - chr2_4:59579220-59579239 Msa0338900:intron 25.0%
! CAAGACAAAGTTTCTTATAA+TGG + chr2_4:59579352-59579371 None:intergenic 25.0%
! CATTATAAGAAACTTTGTCT+TGG - chr2_4:59579350-59579369 Msa0338900:intron 25.0%
! TCAAAAGAATTTGACGTATT+TGG - chr2_4:59579524-59579543 Msa0338900:CDS 25.0%
!! AATATTGATCTAGTTTATGG+AGG - chr2_4:59579626-59579645 Msa0338900:intron 25.0%
! TTCTTCTTCTTAAACCTATT+TGG - chr2_4:59579734-59579753 Msa0338900:CDS 25.0%
! CTTAAACCTATTTGGATTTA+CGG - chr2_4:59579742-59579761 Msa0338900:intron 25.0%
! CGATAAATTTGACAATATCA+CGG + chr2_4:59579795-59579814 None:intergenic 25.0%
! ATATTGAGATAACAAAAGCA+TGG + chr2_4:59580040-59580059 None:intergenic 25.0%
! AAAAATACAAACGTGAAACT+TGG + chr2_4:59580063-59580082 None:intergenic 25.0%
! CCAAGCTTAAATTTATGATA+GGG + chr2_4:59580361-59580380 None:intergenic 25.0%
!! AAGTAATGATGAGTTTTTGA+AGG + chr2_4:59580706-59580725 None:intergenic 25.0%
! AAAATGCATTTGTACCATAA+GGG + chr2_4:59580733-59580752 None:intergenic 25.0%
! AAAAATGCATTTGTACCATA+AGG + chr2_4:59580734-59580753 None:intergenic 25.0%
!! TTATGGTACAAATGCATTTT+TGG - chr2_4:59580733-59580752 Msa0338900:intron 25.0%
! AGTGATATGAGTATTTAGTA+GGG + chr2_4:59580763-59580782 None:intergenic 25.0%
! CTATTGTTTCAGTGATAATT+TGG - chr2_4:59580820-59580839 Msa0338900:intron 25.0%
! ATGATTCACAAGTTTAATAG+TGG + chr2_4:59581303-59581322 None:intergenic 25.0%
!! AGTAGTGATTCACTAATTTT+TGG + chr2_4:59581327-59581346 None:intergenic 25.0%
! GAGATACTAGTAGATATTAT+TGG - chr2_4:59581363-59581382 Msa0338900:intron 25.0%
! ATATTATTGGTCATATGTGT+TGG - chr2_4:59581376-59581395 Msa0338900:intron 25.0%
!! TATGTGTTGGTATATTTAGA+TGG - chr2_4:59581389-59581408 Msa0338900:intron 25.0%
!!! TTGGAAAGCACTTAAATTTT+TGG - chr2_4:59581695-59581714 Msa0338900:intron 25.0%
!!! CTTAAATTTTTGGAATTTGC+AGG - chr2_4:59581705-59581724 Msa0338900:intron 25.0%
! TAAAAAGCTGACAAATTCAA+TGG - chr2_4:59581975-59581994 Msa0338900:intron 25.0%
!!! TATAGATTTTAACCAAGAGT+AGG + chr2_4:59582093-59582112 None:intergenic 25.0%
! CTCTTGGTTAAAATCTATAT+AGG - chr2_4:59582094-59582113 Msa0338900:intron 25.0%
! TTTAGGTCAAATGTATCTAA+AGG - chr2_4:59582173-59582192 Msa0338900:intron 25.0%
!!! GTTTTTCGTTTTTTCCAAAA+TGG - chr2_4:59582203-59582222 Msa0338900:intron 25.0%
!!! TTGTGACTTTTGAAACTTAA+AGG + chr2_4:59582230-59582249 None:intergenic 25.0%
! GAAACGATTCAAAAACTAAA+AGG + chr2_4:59582461-59582480 None:intergenic 25.0%
!! AAAGATGACTAATTTCAAGT+GGG + chr2_4:59582361-59582380 None:intergenic 25.0%
! AAAAGATGACTAATTTCAAG+TGG + chr2_4:59582362-59582381 None:intergenic 25.0%
!!! TTTCAAACAAGTCATTTTAG+AGG + chr2_4:59582445-59582464 None:intergenic 25.0%
! ATAGGATTAGACTTATAAGT+GGG - chr2_4:59582916-59582935 Msa0338900:intron 25.0%
!!! CAATATTTTTACAAAGTGCA+GGG + chr2_4:59583209-59583228 None:intergenic 25.0%
!!! TGTTTTTTTTGTCTAACAGA+AGG + chr2_4:59583133-59583152 None:intergenic 25.0%
!!! CAATATTTTTACAAAGTGCA+GGG - chr2_4:59583209-59583228 Msa0338900:intron 25.0%
! AAACACAAAACTATTGGTAT+TGG + chr2_4:59583236-59583255 None:intergenic 25.0%
!!! CAATATTTTTTCAAAGTGCA+GGG - chr2_4:59583280-59583299 Msa0338900:intron 25.0%
!!! CACTTTTTTTTGTTTGGAAT+TGG + chr2_4:59583307-59583326 None:intergenic 25.0%
! AAGACCAAATCAATAATGTT+TGG + chr2_4:59584279-59584298 None:intergenic 25.0%
! GAAAAACAAATCCATACTTA+TGG - chr2_4:59584478-59584497 Msa0338900:intron 25.0%
!!! TTTTTTCCATTTTGCTTGAA+GGG - chr2_4:59584634-59584653 Msa0338900:intron 25.0%
!! TTATTAGTTTCGACAATATG+TGG + chr2_4:59584663-59584682 None:intergenic 25.0%
!!! TGTTTTGGTAAATAACTAGT+AGG + chr2_4:59584806-59584825 None:intergenic 25.0%
!!! TGTTTTGGTAAATAACTAGT+AGG + chr2_4:59584806-59584825 None:intergenic 25.0%
!!! TGTTTTAGTAAAGTACAAGT+AGG - chr2_4:59585071-59585090 Msa0338900:intron 25.0%
! ATTAGAGTTAAAAAAGTTGG+AGG - chr2_4:59585185-59585204 Msa0338900:intron 25.0%
!!! TTTCTTTTGAGTTTGAAGTT+TGG + chr2_4:59585212-59585231 None:intergenic 25.0%
!!! ATTTTTTTAAGGACCAATGT+TGG + chr2_4:59585267-59585286 None:intergenic 25.0%
! ATACAATCATCTAACAAAAC+TGG - chr2_4:59585287-59585306 Msa0338900:intron 25.0%
! TACAATCATCTAACAAAACT+GGG - chr2_4:59585288-59585307 Msa0338900:intron 25.0%
!!! TAGTACCATGTTTTCTAAAA+GGG - chr2_4:59585382-59585401 Msa0338900:intron 25.0%
!!! TATAACCCTTTTAGAAAACA+TGG + chr2_4:59585390-59585409 None:intergenic 25.0%
! GGTTATATATATTTGCATGA+AGG - chr2_4:59585403-59585422 Msa0338900:intron 25.0%
! TATATATATTTGCATGAAGG+TGG - chr2_4:59585406-59585425 Msa0338900:intron 25.0%
! ATATATATTTGCATGAAGGT+GGG - chr2_4:59585407-59585426 Msa0338900:intron 25.0%
! TGTAGAATGAAAATCTTTAC+CGG + chr2_4:59585496-59585515 None:intergenic 25.0%
!!! ATATTTTTGACAAGCTCTTT+TGG + chr2_4:59585721-59585740 None:intergenic 25.0%
! AAAAGAGCTTGTCAAAAATA+TGG - chr2_4:59585720-59585739 Msa0338900:intron 25.0%
! CTAAAAAAATCTTGAAGAAC+CGG + chr2_4:59585963-59585982 None:intergenic 25.0%
!! TCTTAGATTTCACAATTTTG+AGG + chr2_4:59586088-59586107 None:intergenic 25.0%
AACAAACACAGATAAGACAT+TGG - chr2_4:59578912-59578931 Msa0338900:three_prime_UTR 30.0%
!! TCAGCATCATTTTAATGATG+TGG - chr2_4:59578966-59578985 Msa0338900:three_prime_UTR 30.0%
CTTCTCTCTTTGTTAATTGT+TGG + chr2_4:59579101-59579120 None:intergenic 30.0%
! AAGAGAATTTGTGTGTTTTG+TGG - chr2_4:59579158-59579177 Msa0338900:intron 30.0%
!!! TATAGCTAGTTTTGTTACCA+GGG + chr2_4:59579190-59579209 None:intergenic 30.0%
!!! TTATAGCTAGTTTTGTTACC+AGG + chr2_4:59579191-59579210 None:intergenic 30.0%
TGGTAACAAAACTAGCTATA+AGG - chr2_4:59579190-59579209 Msa0338900:intron 30.0%
ATTTCTCAAGCTGTTTATGA+TGG - chr2_4:59579674-59579693 Msa0338900:intron 30.0%
TGTGTGATTATTCATTCAAG+TGG - chr2_4:59580084-59580103 Msa0338900:intron 30.0%
GTGTGATTATTCATTCAAGT+GGG - chr2_4:59580085-59580104 Msa0338900:intron 30.0%
CTTATCTATCAATATACACC+TGG - chr2_4:59580173-59580192 Msa0338900:intron 30.0%
! AGAATCTAAAGGGTGTAATA+TGG + chr2_4:59580250-59580269 None:intergenic 30.0%
AATGCGAATGAGAATCTAAA+GGG + chr2_4:59580260-59580279 None:intergenic 30.0%
TAATGCGAATGAGAATCTAA+AGG + chr2_4:59580261-59580280 None:intergenic 30.0%
CCCTATCATAAATTTAAGCT+TGG - chr2_4:59580358-59580377 Msa0338900:intron 30.0%
GCCAAGCTTAAATTTATGAT+AGG + chr2_4:59580362-59580381 None:intergenic 30.0%
CCTTAGAGAAGTTTATTCAT+AGG + chr2_4:59580513-59580532 None:intergenic 30.0%
CCTATGAATAAACTTCTCTA+AGG - chr2_4:59580510-59580529 Msa0338900:intron 30.0%
ATCATTACTTCTTTCCCTTA+TGG - chr2_4:59580716-59580735 Msa0338900:intron 30.0%
GAGTGATATGAGTATTTAGT+AGG + chr2_4:59580764-59580783 None:intergenic 30.0%
TGTGGAATGTAAATTCCAAT+AGG - chr2_4:59581007-59581026 Msa0338900:intron 30.0%
TTCCAATAGGTGATTCATTA+AGG - chr2_4:59581020-59581039 Msa0338900:intron 30.0%
CGAATTTGGATTTATGAAGT+TGG - chr2_4:59581106-59581125 Msa0338900:intron 30.0%
ATTTGGATTTATGAAGTTGG+AGG - chr2_4:59581109-59581128 Msa0338900:intron 30.0%
GGGTATCTCTATAAATGTAA+GGG - chr2_4:59581269-59581288 Msa0338900:intron 30.0%
!!! AATTTTTCCCCACTTTTTGT+TGG - chr2_4:59581676-59581695 Msa0338900:intron 30.0%
ACATAACGACGACTAAAATA+AGG - chr2_4:59581759-59581778 Msa0338900:intron 30.0%
CATAACGACGACTAAAATAA+GGG - chr2_4:59581760-59581779 Msa0338900:intron 30.0%
AGTTAAGGGTCAAATATAGT+AGG + chr2_4:59581904-59581923 None:intergenic 30.0%
TACTATATTTGACCCTTAAC+TGG - chr2_4:59581903-59581922 Msa0338900:intron 30.0%
ACTATATTTGACCCTTAACT+GGG - chr2_4:59581904-59581923 Msa0338900:intron 30.0%
AAGAGTAGGTTGTAAAGTTT+AGG + chr2_4:59582079-59582098 None:intergenic 30.0%
TAAACTTTACAACCTACTCT+TGG - chr2_4:59582078-59582097 Msa0338900:intron 30.0%
TGATTTCCATGTAAATTTGC+TGG + chr2_4:59582121-59582140 None:intergenic 30.0%
! TGAAACTTAAAGGACCATTT+TGG + chr2_4:59582220-59582239 None:intergenic 30.0%
CCAACTATGCTATCTATAAT+AGG + chr2_4:59582290-59582309 None:intergenic 30.0%
CCTATTATAGATAGCATAGT+TGG - chr2_4:59582287-59582306 Msa0338900:intron 30.0%
!! ATCTTTTTAGGCATGACAAA+TGG - chr2_4:59582375-59582394 Msa0338900:intron 30.0%
!!! TTGGGACTTTTGAAACTTAA+AGG - chr2_4:59582490-59582509 Msa0338900:intron 30.0%
! TGAAACTTAAAGGACTTGTT+TGG - chr2_4:59582500-59582519 Msa0338900:intron 30.0%
TGAAACTTAAAGGATCACTT+TGG - chr2_4:59582529-59582548 Msa0338900:intron 30.0%
GAAACTTAAAGGATCACTTT+GGG - chr2_4:59582530-59582549 Msa0338900:intron 30.0%
GGGAAAAACGAAAAACTTAA+AGG - chr2_4:59582550-59582569 Msa0338900:intron 30.0%
GATAGGATTAGACTTATAAG+TGG - chr2_4:59582915-59582934 Msa0338900:intron 30.0%
TAGGATTAGACTTATAAGTG+GGG - chr2_4:59582917-59582936 Msa0338900:intron 30.0%
! AAATCTTTTTGGACATCGTA+TGG + chr2_4:59582976-59582995 None:intergenic 30.0%
!!! CACTTTTTTTTGTTTGGCAT+TGG - chr2_4:59583075-59583094 Msa0338900:intron 30.0%
!! CCAATATTTTTACAAAGTGC+AGG + chr2_4:59583208-59583227 None:intergenic 30.0%
CCTGCACTTTGTAAAAATAT+TGG - chr2_4:59583100-59583119 Msa0338900:intron 30.0%
CCTGCACTTTGTAAAAATAT+TGG + chr2_4:59583100-59583119 None:intergenic 30.0%
!! CCAATATTTTTACAAAGTGC+AGG - chr2_4:59583208-59583227 Msa0338900:intron 30.0%
! CCTGCACTTTGAAAAAATAT+TGG + chr2_4:59583282-59583301 None:intergenic 30.0%
!!! CCAATATTTTTTCAAAGTGC+AGG - chr2_4:59583279-59583298 Msa0338900:intron 30.0%
! TTCCAAACAAAAAAAAGTGC+AGG - chr2_4:59583308-59583327 Msa0338900:intron 30.0%
! TCCAAACAAAAAAAAGTGCA+GGG - chr2_4:59583309-59583328 Msa0338900:intron 30.0%
!! CTTTTATCAGATTTTGGCAT+TGG + chr2_4:59583336-59583355 None:intergenic 30.0%
! CAAAATCTGATAAAAGTGCA+GGG - chr2_4:59583340-59583359 Msa0338900:intron 30.0%
CTTTCAAAGCCTTCAATAAT+AGG - chr2_4:59584016-59584035 Msa0338900:intron 30.0%
TGCAAGGAGAAATTCTAATA+TGG - chr2_4:59584127-59584146 Msa0338900:intron 30.0%
AGAAATTCTAATATGGTCAC+AGG - chr2_4:59584134-59584153 Msa0338900:intron 30.0%
! GTGTCCAAACATTATTGATT+TGG - chr2_4:59584272-59584291 Msa0338900:CDS 30.0%
TAAGTAGATGACCATAAGTA+TGG + chr2_4:59584492-59584511 None:intergenic 30.0%
!!! CTTTTTTCCATTTTGCTTGA+AGG - chr2_4:59584633-59584652 Msa0338900:intron 30.0%
AATAACAATTCCATACCATC+AGG - chr2_4:59584678-59584697 Msa0338900:intron 30.0%
! ATTTCTTTTTCCTGATGGTA+TGG + chr2_4:59584691-59584710 None:intergenic 30.0%
! AGACAATTTCTTTTTCCTGA+TGG + chr2_4:59584696-59584715 None:intergenic 30.0%
! ATAGAAAAACATGGGTGTTT+TGG + chr2_4:59584821-59584840 None:intergenic 30.0%
! ATAGAAAAACATGGGTGTTT+TGG + chr2_4:59584821-59584840 None:intergenic 30.0%
!! AATGTTGGTGATTAGTTGTT+AGG + chr2_4:59585252-59585271 None:intergenic 30.0%
TAACAACTAATCACCAACAT+TGG - chr2_4:59585251-59585270 Msa0338900:intron 30.0%
ACAATCATCTAACAAAACTG+GGG - chr2_4:59585289-59585308 Msa0338900:intron 30.0%
! CTAGTACCATGTTTTCTAAA+AGG - chr2_4:59585381-59585400 Msa0338900:intron 30.0%
!! AAATCTTTACCGGTTTATCA+TGG + chr2_4:59585486-59585505 None:intergenic 30.0%
TTTGTCGATGAAAGTCAAAA+AGG + chr2_4:59585638-59585657 None:intergenic 30.0%
!!! TCTTTTGGTTTCATTCATGT+AGG - chr2_4:59585996-59586015 Msa0338900:CDS 30.0%
! ACATTGGAACAAGTTTTCCT+TGG - chr2_4:59578928-59578947 Msa0338900:three_prime_UTR 35.0%
TAGTTTAACCAATGCCTCAA+GGG - chr2_4:59579442-59579461 Msa0338900:CDS 35.0%
! ATTGATCTAGTTTATGGAGG+AGG - chr2_4:59579629-59579648 Msa0338900:intron 35.0%
! TCTCTTGGCATTAGTGTTTT+GGG + chr2_4:59579896-59579915 None:intergenic 35.0%
GAAAGACAAAATCGTTCAGA+AGG + chr2_4:59580217-59580236 None:intergenic 35.0%
! AAAGGGTGTAATATGGAACA+TGG + chr2_4:59580243-59580262 None:intergenic 35.0%
!! GATGAGTTTTTGAAGGTAGT+GGG + chr2_4:59580699-59580718 None:intergenic 35.0%
!! TGATGAGTTTTTGAAGGTAG+TGG + chr2_4:59580700-59580719 None:intergenic 35.0%
AACTATTGGAGCTAGAAAGA+AGG + chr2_4:59580974-59580993 None:intergenic 35.0%
! TAGCTCCAATAGTTTTCTCA+TGG - chr2_4:59580980-59580999 Msa0338900:intron 35.0%
! TCCAATAGTTTTCTCATGGA+TGG - chr2_4:59580984-59581003 Msa0338900:intron 35.0%
ACCATCCATGAGAAAACTAT+TGG + chr2_4:59580988-59581007 None:intergenic 35.0%
TGCCTTAATGAATCACCTAT+TGG + chr2_4:59581025-59581044 None:intergenic 35.0%
TCATTAAGGCACATGTCAAA+AGG - chr2_4:59581034-59581053 Msa0338900:intron 35.0%
CAAATTCGTCTATAGTCATG+CGG + chr2_4:59581094-59581113 None:intergenic 35.0%
ATATTCTAACCGCGTTAACT+AGG - chr2_4:59581247-59581266 Msa0338900:intron 35.0%
TATTCTAACCGCGTTAACTA+GGG - chr2_4:59581248-59581267 Msa0338900:intron 35.0%
! GGGGTATCTCTATAAATGTA+AGG - chr2_4:59581268-59581287 Msa0338900:intron 35.0%
AAAACACTATGATTGGCAGT+TGG + chr2_4:59581630-59581649 None:intergenic 35.0%
AGTGCTTTCCAACAAAAAGT+GGG + chr2_4:59581687-59581706 None:intergenic 35.0%
AAGTGCTTTCCAACAAAAAG+TGG + chr2_4:59581688-59581707 None:intergenic 35.0%
!!! ATTTTTGGAATTTGCAGGAG+TGG - chr2_4:59581710-59581729 Msa0338900:intron 35.0%
TTGGTTAAGAAACCCAAAAG+AGG - chr2_4:59581809-59581828 Msa0338900:intron 35.0%
CTATATTTGACCCTTAACTG+GGG - chr2_4:59581905-59581924 Msa0338900:intron 35.0%
GACAAATTCAATGGAAGAGA+TGG - chr2_4:59581984-59582003 Msa0338900:intron 35.0%
CAATATCAATCGCTACTCAT+TGG + chr2_4:59582022-59582041 None:intergenic 35.0%
ATAGGTCCAGCAAATTTACA+TGG - chr2_4:59582112-59582131 Msa0338900:intron 35.0%
! ACTAATTTCAAGTGGGTGTT+AGG + chr2_4:59582354-59582373 None:intergenic 35.0%
!! TTTTTAGGCATGACAAATGG+TGG - chr2_4:59582378-59582397 Msa0338900:intron 35.0%
!! CAAGTCATTTTAGAGGATGA+TGG + chr2_4:59582438-59582457 None:intergenic 35.0%
TAGGTTAAAAGATGGTTGAC+TGG + chr2_4:59582685-59582704 None:intergenic 35.0%
ATCATCTGAGTTCGATCATT+TGG + chr2_4:59582749-59582768 None:intergenic 35.0%
! CATTATCAAGATCTTTTCCC+TGG - chr2_4:59582858-59582877 Msa0338900:intron 35.0%
! AAGATCTTTTCCCTGGAAAA+CGG - chr2_4:59582865-59582884 Msa0338900:intron 35.0%
! CAAAACCTGATAAAAGTGCA+GGG + chr2_4:59583042-59583061 None:intergenic 35.0%
!! CTTTTATCAGGTTTTGGCAT+TGG - chr2_4:59583046-59583065 Msa0338900:intron 35.0%
!!! TCCCTGCACTTTTTTTTGTT+TGG - chr2_4:59583069-59583088 Msa0338900:intron 35.0%
! GCCAAACAAAAAAAAGTGCA+GGG + chr2_4:59583073-59583092 None:intergenic 35.0%
! TGCCAAACAAAAAAAAGTGC+AGG + chr2_4:59583074-59583093 None:intergenic 35.0%
!!! TCCCTGCACTTTTTTTTGTT+TGG + chr2_4:59583069-59583088 None:intergenic 35.0%
! CCTGCACTTTTATCAGATTT+TGG + chr2_4:59583342-59583361 None:intergenic 35.0%
! CCAAAATCTGATAAAAGTGC+AGG - chr2_4:59583339-59583358 Msa0338900:intron 35.0%
ATTATATGAATGCGCCACTT+CGG - chr2_4:59583386-59583405 Msa0338900:intron 35.0%
! TAATTAATGGACAACCGAAG+TGG + chr2_4:59583403-59583422 None:intergenic 35.0%
CAAGAAAATGTAAACCGAAG+TGG + chr2_4:59583495-59583514 None:intergenic 35.0%
TGCAAGATCGATGTAAGTAT+GGG + chr2_4:59584111-59584130 None:intergenic 35.0%
TTGCAAGATCGATGTAAGTA+TGG + chr2_4:59584112-59584131 None:intergenic 35.0%
ATACTTACATCGATCTTGCA+AGG - chr2_4:59584111-59584130 Msa0338900:intron 35.0%
! CTTTATCTTTGGGTTTGTGT+GGG + chr2_4:59584339-59584358 None:intergenic 35.0%
CACACAAACCCAAAGATAAA+GGG - chr2_4:59584338-59584357 Msa0338900:intron 35.0%
ACACAAACCCAAAGATAAAG+GGG - chr2_4:59584339-59584358 Msa0338900:intron 35.0%
CAAAGATAGTCCTCTAATTC+TGG - chr2_4:59584522-59584541 Msa0338900:intron 35.0%
TATTCTCTCACCAGAATTAG+AGG + chr2_4:59584535-59584554 None:intergenic 35.0%
! ACTTGCACCTTAGTGTTTTT+AGG + chr2_4:59584771-59584790 None:intergenic 35.0%
TTGGTGCAGACACAATAATA+TGG + chr2_4:59585696-59585715 None:intergenic 35.0%
AGAGCTTGTCAAAAATATGG+AGG - chr2_4:59585723-59585742 Msa0338900:intron 35.0%
! GTTGGCTAGAAGTATATAGT+TGG + chr2_4:59585754-59585773 None:intergenic 35.0%
ATCGGTTAAATCGAAAACGT+TGG + chr2_4:59585772-59585791 None:intergenic 35.0%
TAGTCTATTCTCGGTTCAAT+CGG + chr2_4:59585790-59585809 None:intergenic 35.0%
GAACCGAGAATAGACTAATT+AGG - chr2_4:59585793-59585812 Msa0338900:intron 35.0%
! CCACCTAATTAGTCTATTCT+CGG + chr2_4:59585799-59585818 None:intergenic 35.0%
GAATAGACTAATTAGGTGGT+TGG - chr2_4:59585800-59585819 Msa0338900:intron 35.0%
!! TTAGGTGGTTGGTTTAATCT+CGG - chr2_4:59585811-59585830 Msa0338900:intron 35.0%
! GCGATTCAACTGATTTAATG+CGG + chr2_4:59585879-59585898 None:intergenic 35.0%
GCATTAAATCAGTTGAATCG+CGG - chr2_4:59585878-59585897 Msa0338900:intron 35.0%
TTGAAGAACCGGTGAAAATT+CGG + chr2_4:59585952-59585971 None:intergenic 35.0%
TCAAAATGTGAGACAACTCA+AGG - chr2_4:59586134-59586153 Msa0338900:five_prime_UTR 35.0%
GGTAGAAGATCACAATTTCA+TGG - chr2_4:59586166-59586185 Msa0338900:five_prime_UTR 35.0%
! GTAAGAGCACACAAAAATCT+CGG + chr2_4:59586194-59586213 None:intergenic 35.0%
!! ATGATGCTGACTCGTCTATA+GGG + chr2_4:59578956-59578975 None:intergenic 40.0%
!! AATGATGCTGACTCGTCTAT+AGG + chr2_4:59578957-59578976 None:intergenic 40.0%
CCTTTGATATGAGTGGTTGA+TGG + chr2_4:59579057-59579076 None:intergenic 40.0%
CCATCAACCACTCATATCAA+AGG - chr2_4:59579054-59579073 Msa0338900:three_prime_UTR 40.0%
TCTCTCACCTTTGATATGAG+TGG + chr2_4:59579064-59579083 None:intergenic 40.0%
AAGGATGCTGCTATTGAACT+TGG - chr2_4:59579209-59579228 Msa0338900:intron 40.0%
GTAGTTTAACCAATGCCTCA+AGG - chr2_4:59579441-59579460 Msa0338900:CDS 40.0%
AATGTTAACCATTGCCCTTG+AGG + chr2_4:59579459-59579478 None:intergenic 40.0%
TCTCAAGCTGTTTATGATGG+TGG - chr2_4:59579677-59579696 Msa0338900:intron 40.0%
ATGGTGGTCGACATGTAATT+GGG - chr2_4:59579693-59579712 Msa0338900:CDS 40.0%
GAAGAAGAAGATGAAGCTCT+TGG + chr2_4:59579723-59579742 None:intergenic 40.0%
GGGTTTCCGTAAATCCAAAT+AGG + chr2_4:59579751-59579770 None:intergenic 40.0%
GACACAATGCGATTATGCTA+GGG + chr2_4:59579771-59579790 None:intergenic 40.0%
TGACACAATGCGATTATGCT+AGG + chr2_4:59579772-59579791 None:intergenic 40.0%
! CTCTCTTGGCATTAGTGTTT+TGG + chr2_4:59579897-59579916 None:intergenic 40.0%
CAAAACACTAATGCCAAGAG+AGG - chr2_4:59579895-59579914 Msa0338900:intron 40.0%
CAACATAACCTTACCTCTCT+TGG + chr2_4:59579911-59579930 None:intergenic 40.0%
! GAGGTAAGGTTATGTTGCTT+TGG - chr2_4:59579914-59579933 Msa0338900:intron 40.0%
TTCATTCAAGTGGGAACTAG+TGG - chr2_4:59580094-59580113 Msa0338900:intron 40.0%
TCAATATACACCTGGCAATC+TGG - chr2_4:59580181-59580200 Msa0338900:intron 40.0%
CAATATACACCTGGCAATCT+GGG - chr2_4:59580182-59580201 Msa0338900:intron 40.0%
AATATACACCTGGCAATCTG+GGG - chr2_4:59580183-59580202 Msa0338900:intron 40.0%
GTATATATGCTGCAGCTTAC+TGG - chr2_4:59580842-59580861 Msa0338900:intron 40.0%
GCATCAAAGGAAAGCTGAAA+TGG - chr2_4:59580901-59580920 Msa0338900:intron 40.0%
TTGTTTGTACCAACCTGGTA+AGG + chr2_4:59580951-59580970 None:intergenic 40.0%
! TAGTTTTCTCATGGATGGTG+TGG - chr2_4:59580989-59581008 Msa0338900:intron 40.0%
CGCATGACTATAGACGAATT+TGG - chr2_4:59581092-59581111 Msa0338900:intron 40.0%
GTCACGATTGCATGAATATG+TGG + chr2_4:59581138-59581157 None:intergenic 40.0%
TCATGCAATCGTGACAACAT+CGG - chr2_4:59581143-59581162 Msa0338900:intron 40.0%
ATTCTAACCGCGTTAACTAG+GGG - chr2_4:59581249-59581268 Msa0338900:intron 40.0%
GTGCTTTCCAACAAAAAGTG+GGG + chr2_4:59581686-59581705 None:intergenic 40.0%
TGCTTCCTTGAACACATCTT+TGG - chr2_4:59582314-59582333 Msa0338900:intron 40.0%
TGGTACCAAAGATGTGTTCA+AGG + chr2_4:59582322-59582341 None:intergenic 40.0%
CACATCTTTGGTACCAAATC+TGG - chr2_4:59582326-59582345 Msa0338900:intron 40.0%
! CTTAATCCTTCCGTTTTCCA+GGG + chr2_4:59582878-59582897 None:intergenic 40.0%
! TCTTAATCCTTCCGTTTTCC+AGG + chr2_4:59582879-59582898 None:intergenic 40.0%
! TTAGTCCCTGCACTTTTATC+AGG - chr2_4:59583034-59583053 Msa0338900:intron 40.0%
! CCAAAACCTGATAAAAGTGC+AGG + chr2_4:59583043-59583062 None:intergenic 40.0%
! CCTGCACTTTTATCAGGTTT+TGG - chr2_4:59583040-59583059 Msa0338900:intron 40.0%
! GATAAAAGTGCAGGGACTAA+AGG - chr2_4:59583348-59583367 Msa0338900:intron 40.0%
GTGGCGCATTCATATAATGT+AGG + chr2_4:59583384-59583403 None:intergenic 40.0%
!! GAAGGCTTTGAAAGCGATTA+AGG + chr2_4:59584010-59584029 None:intergenic 40.0%
CTAATATGGTCACAGGACTA+AGG - chr2_4:59584141-59584160 Msa0338900:intron 40.0%
! CCTTTATCTTTGGGTTTGTG+TGG + chr2_4:59584340-59584359 None:intergenic 40.0%
CCACACAAACCCAAAGATAA+AGG - chr2_4:59584337-59584356 Msa0338900:intron 40.0%
CACAAGACCCCTTTATCTTT+GGG + chr2_4:59584349-59584368 None:intergenic 40.0%
TCACAAGACCCCTTTATCTT+TGG + chr2_4:59584350-59584369 None:intergenic 40.0%
CACTTGCAGGTATTCTTCTA+TGG + chr2_4:59584373-59584392 None:intergenic 40.0%
CATAGAAGAATACCTGCAAG+TGG - chr2_4:59584371-59584390 Msa0338900:intron 40.0%
! CTGTATCTTTGGGTTTGTGT+GGG + chr2_4:59584401-59584420 None:intergenic 40.0%
CACACAAACCCAAAGATACA+GGG - chr2_4:59584400-59584419 Msa0338900:intron 40.0%
ACACAAACCCAAAGATACAG+GGG - chr2_4:59584401-59584420 Msa0338900:intron 40.0%
GAATCGTTCATAAGCTTAGC+AGG - chr2_4:59584456-59584475 Msa0338900:intron 40.0%
!!! GCACCTTAGTGTTTTTAGGT+GGG + chr2_4:59585110-59585129 None:intergenic 40.0%
!!! TGCACCTTAGTGTTTTTAGG+TGG + chr2_4:59584768-59584787 None:intergenic 40.0%
! ACTCGCACCTTAGTGTTTTT+AGG - chr2_4:59585106-59585125 Msa0338900:intron 40.0%
!!! GCACCTTAGTGTTTTTAGGT+GGG - chr2_4:59585110-59585129 Msa0338900:intron 40.0%
ATCTAACAAAACTGGGGAAG+TGG - chr2_4:59585295-59585314 Msa0338900:intron 40.0%
TATTTGCATGAAGGTGGGTA+TGG - chr2_4:59585412-59585431 Msa0338900:intron 40.0%
ATTTGCATGAAGGTGGGTAT+GGG - chr2_4:59585413-59585432 Msa0338900:intron 40.0%
ACTTGGCATCCATGATAAAC+CGG - chr2_4:59585474-59585493 Msa0338900:CDS 40.0%
ACAATAATATGGCGAGCTGT+GGG + chr2_4:59585685-59585704 None:intergenic 40.0%
!! TTGACAAGCTCTTTTGGTGT+TGG + chr2_4:59585715-59585734 None:intergenic 40.0%
CCGAGAATAGACTAATTAGG+TGG - chr2_4:59585796-59585815 Msa0338900:intron 40.0%
! ACCATAACCCGAATTTTCAC+CGG - chr2_4:59585941-59585960 Msa0338900:intron 40.0%
TGAAGAACCGGTGAAAATTC+GGG + chr2_4:59585951-59585970 None:intergenic 40.0%
GACAACTCAAGGAACTACTA+TGG - chr2_4:59586145-59586164 Msa0338900:five_prime_UTR 40.0%
GGTGTATAAGCGCGGTTATA+TGG + chr2_4:59579036-59579055 None:intergenic 45.0%
!! TGGTTGATGGTGTATAAGCG+CGG + chr2_4:59579044-59579063 None:intergenic 45.0%
ATCCTTAACCATTGCCCTCA+GGG + chr2_4:59579328-59579347 None:intergenic 45.0%
AATCCTTAACCATTGCCCTC+AGG + chr2_4:59579329-59579348 None:intergenic 45.0%
! GATGGTGGTCGACATGTAAT+TGG - chr2_4:59579692-59579711 Msa0338900:CDS 45.0%
CACTAATGCCAAGAGAGGTA+AGG - chr2_4:59579900-59579919 Msa0338900:intron 45.0%
ATAAACAACCCCAGATTGCC+AGG + chr2_4:59580194-59580213 None:intergenic 45.0%
CAGCTTACTGGTGAAACAGT+AGG - chr2_4:59580854-59580873 Msa0338900:intron 45.0%
CAGTAGCTGACATGCATCAA+AGG - chr2_4:59580888-59580907 Msa0338900:intron 45.0%
! GATGCCTTTATAGCCTTACC+AGG - chr2_4:59580935-59580954 Msa0338900:intron 45.0%
CCAACCTGGTAAGGCTATAA+AGG + chr2_4:59580942-59580961 None:intergenic 45.0%
! CCTTTATAGCCTTACCAGGT+TGG - chr2_4:59580939-59580958 Msa0338900:intron 45.0%
GAAGGTTGTTTGTACCAACC+TGG + chr2_4:59580956-59580975 None:intergenic 45.0%
AGAGATACCCCTAGTTAACG+CGG + chr2_4:59581259-59581278 None:intergenic 45.0%
GGTTTCTTAACCAATGCTCC+GGG + chr2_4:59581803-59581822 None:intergenic 45.0%
GGGTTTCTTAACCAATGCTC+CGG + chr2_4:59581804-59581823 None:intergenic 45.0%
TTAACCAGTGCCCCAGTTAA+GGG + chr2_4:59581918-59581937 None:intergenic 45.0%
CAATGGAAGAGATGGTGAAG+AGG - chr2_4:59581992-59582011 Msa0338900:intron 45.0%
! TCTTTTCCCTGGAAAACGGA+AGG - chr2_4:59582869-59582888 Msa0338900:intron 45.0%
CCACGTGGCATGAAATGATT+GGG + chr2_4:59583180-59583199 None:intergenic 45.0%
!! ATATTGGTATTGGTGCCACG+TGG + chr2_4:59583195-59583214 None:intergenic 45.0%
CATTCTTAGATGCGCCACTT+CGG - chr2_4:59583478-59583497 Msa0338900:intron 45.0%
! GCAGGCGAAGTATTCTTCTA+TGG + chr2_4:59584306-59584325 None:intergenic 45.0%
AAGAATACTTCGCCTGCAAG+TGG - chr2_4:59584309-59584328 Msa0338900:intron 45.0%
! CCTGTATCTTTGGGTTTGTG+TGG + chr2_4:59584402-59584421 None:intergenic 45.0%
CCACACAAACCCAAAGATAC+AGG - chr2_4:59584399-59584418 Msa0338900:intron 45.0%
TGGAGACCCTTCAAGCAAAA+TGG + chr2_4:59584643-59584662 None:intergenic 45.0%
GCACCCACCTAAAAACACTA+AGG - chr2_4:59584761-59584780 Msa0338900:intron 45.0%
!!! CGCACCTTAGTGTTTTTAGG+TGG - chr2_4:59585109-59585128 Msa0338900:intron 45.0%
GCACCCACCTAAAAACACTA+AGG + chr2_4:59584761-59584780 None:intergenic 45.0%
AGCTCCTTGAGGTGATAACA+TGG - chr2_4:59585446-59585465 Msa0338900:intron 45.0%
GCTCCTTGAGGTGATAACAT+GGG - chr2_4:59585447-59585466 Msa0338900:intron 45.0%
GTGATAACATGGGCTCAACT+TGG - chr2_4:59585457-59585476 Msa0338900:intron 45.0%
GTGGGATTGCTGAATGTTGA+TGG - chr2_4:59585601-59585620 Msa0338900:intron 45.0%
GACTTTCATCGACAAAGCTG+TGG - chr2_4:59585642-59585661 Msa0338900:intron 45.0%
TTTCATCGACAAAGCTGTGG+AGG - chr2_4:59585645-59585664 Msa0338900:intron 45.0%
CAATAATATGGCGAGCTGTG+GGG + chr2_4:59585684-59585703 None:intergenic 45.0%
CACAATAATATGGCGAGCTG+TGG + chr2_4:59585686-59585705 None:intergenic 45.0%
! ACCGGTGAAAATTCGGGTTA+TGG + chr2_4:59585945-59585964 None:intergenic 45.0%
AGGCAACTCTTTCATGCTGT+GGG + chr2_4:59586029-59586048 None:intergenic 45.0%
!! ATTTTCCCAGCTTAGCTTGG+AGG + chr2_4:59586049-59586068 None:intergenic 45.0%
! CTCATTTTCCCAGCTTAGCT+TGG + chr2_4:59586052-59586071 None:intergenic 45.0%
!! AATTAAATATTAGATTTATA+TGG + chr2_4:59580384-59580403 None:intergenic 5.0%
!!! TATATAATTTTGATATATTT+TGG + chr2_4:59581438-59581457 None:intergenic 5.0%
!! ATTATATATATATATATATG+GGG - chr2_4:59584728-59584747 Msa0338900:intron 5.0%
!! ATATATATATATATATATAG+GGG + chr2_4:59585150-59585169 None:intergenic 5.0%
GACTCGTCTATAGGGAACCA+AGG + chr2_4:59578948-59578967 None:intergenic 50.0%
! GTGTTTTGTGGTAGTAGCCC+TGG - chr2_4:59579170-59579189 Msa0338900:intron 50.0%
ATTGCTAACCAGTGCCCTGA+GGG - chr2_4:59579311-59579330 Msa0338900:intron 50.0%
AACCAATGCCTCAAGGGCAA+TGG - chr2_4:59579448-59579467 Msa0338900:CDS 50.0%
AACCATTGCCCTTGAGGCAT+TGG + chr2_4:59579453-59579472 None:intergenic 50.0%
GTTTATGGAGGAGGCAGCAT+TGG - chr2_4:59579638-59579657 Msa0338900:intron 50.0%
!! AGGAGGCAGCATTGGTTTGA+TGG - chr2_4:59579646-59579665 Msa0338900:intron 50.0%
!! GGAGGCAGCATTGGTTTGAT+GGG - chr2_4:59579647-59579666 Msa0338900:intron 50.0%
!! GAGGCAGCATTGGTTTGATG+GGG - chr2_4:59579648-59579667 Msa0338900:intron 50.0%
! GTCTTGTTAACCAGTGCTCC+CGG - chr2_4:59581782-59581801 Msa0338900:intron 50.0%
GTTAACCAGTGCCCCAGTTA+AGG + chr2_4:59581919-59581938 None:intergenic 50.0%
TGGGTGTTAGGAGCCAGATT+TGG + chr2_4:59582342-59582361 None:intergenic 50.0%
! AAAACTAACGGAGTGCCACG+TGG - chr2_4:59583154-59583173 Msa0338900:intron 50.0%
CATGAAATGATTGGGCCACG+TGG + chr2_4:59583172-59583191 None:intergenic 50.0%
CCCAATCATTTCATGCCACG+TGG - chr2_4:59583177-59583196 Msa0338900:intron 50.0%
GCCACGTGGCATGAAATGAT+TGG + chr2_4:59583181-59583200 None:intergenic 50.0%
TCATGGGCCCCTGTATCTTT+GGG + chr2_4:59584411-59584430 None:intergenic 50.0%
ATCATGGGCCCCTGTATCTT+TGG + chr2_4:59584412-59584431 None:intergenic 50.0%
AGATACAGGGGCCCATGATA+AGG - chr2_4:59584413-59584432 Msa0338900:intron 50.0%
GATACAGGGGCCCATGATAA+GGG - chr2_4:59584414-59584433 Msa0338900:intron 50.0%
GAGAAAGCCGCCCTTATCAT+GGG + chr2_4:59584427-59584446 None:intergenic 50.0%
AGAGAAAGCCGCCCTTATCA+TGG + chr2_4:59584428-59584447 None:intergenic 50.0%
GAGCCCATGTTATCACCTCA+AGG + chr2_4:59585453-59585472 None:intergenic 50.0%
ATCGACAAAGCTGTGGAGGA+AGG - chr2_4:59585649-59585668 Msa0338900:intron 50.0%
GAGGCAACTCTTTCATGCTG+TGG + chr2_4:59586030-59586049 None:intergenic 50.0%
AGTTGCCTCCAAGCTAAGCT+GGG - chr2_4:59586041-59586060 Msa0338900:CDS 50.0%
CATTGCTAACCAGTGCCCTG+AGG - chr2_4:59579310-59579329 Msa0338900:intron 55.0%
TGCCCTGAGGGCAATGGTTA+AGG - chr2_4:59579323-59579342 Msa0338900:intron 55.0%
GGAATTTGCAGGAGTGGTGC+AGG - chr2_4:59581716-59581735 Msa0338900:intron 55.0%
TTGACCCTTAACTGGGGCAC+TGG - chr2_4:59581911-59581930 Msa0338900:intron 55.0%
TGTGTGGGTAAGCCACTTGC+AGG + chr2_4:59584324-59584343 None:intergenic 55.0%
TGTGTGGGTAAGCCACTTGC+AGG + chr2_4:59584324-59584343 None:intergenic 55.0%
AGGTGGGTATGGGACACTTG+AGG - chr2_4:59585423-59585442 Msa0338900:intron 55.0%
GACACTTGAGGAGCTCCTTG+AGG - chr2_4:59585435-59585454 Msa0338900:intron 55.0%
GAGTTGCCTCCAAGCTAAGC+TGG - chr2_4:59586040-59586059 Msa0338900:CDS 55.0%
AACCAGTGCCCTGAGGGCAA+TGG - chr2_4:59579317-59579336 Msa0338900:intron 60.0%
AACCATTGCCCTCAGGGCAC+TGG + chr2_4:59579322-59579341 None:intergenic 60.0%
GGCAGTTGGCACGTCACAAG+TGG + chr2_4:59581616-59581635 None:intergenic 60.0%
AACCAGTGCTCCCGGAGCAT+TGG - chr2_4:59581790-59581809 Msa0338900:intron 60.0%
! AACCAATGCTCCGGGAGCAC+TGG + chr2_4:59581795-59581814 None:intergenic 60.0%
ACAGGGGCCCATGATAAGGG+CGG - chr2_4:59584417-59584436 Msa0338900:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 59578866 59586317 59578866 ID=Msa0338900;Name=Msa0338900
chr2_4 mRNA 59578866 59586317 59578866 ID=Msa0338900-mRNA-1;Parent=Msa0338900;Name=Msa0338900-mRNA-1;_AED=0.08;_eAED=0.08;_QI=223|1|1|1|0.85|0.75|8|234|209
chr2_4 exon 59578866 59579165 59578866 ID=Msa0338900-mRNA-1:exon:18471;Parent=Msa0338900-mRNA-1
chr2_4 exon 59579439 59579582 59579439 ID=Msa0338900-mRNA-1:exon:18470;Parent=Msa0338900-mRNA-1
chr2_4 exon 59579688 59579758 59579688 ID=Msa0338900-mRNA-1:exon:18469;Parent=Msa0338900-mRNA-1
chr2_4 exon 59584227 59584326 59584227 ID=Msa0338900-mRNA-1:exon:18468;Parent=Msa0338900-mRNA-1
chr2_4 exon 59585267 59585297 59585267 ID=Msa0338900-mRNA-1:exon:18467;Parent=Msa0338900-mRNA-1
chr2_4 exon 59585469 59585566 59585469 ID=Msa0338900-mRNA-1:exon:18466;Parent=Msa0338900-mRNA-1
chr2_4 exon 59585942 59586070 59585942 ID=Msa0338900-mRNA-1:exon:18465;Parent=Msa0338900-mRNA-1
chr2_4 exon 59586104 59586317 59586104 ID=Msa0338900-mRNA-1:exon:18464;Parent=Msa0338900-mRNA-1
chr2_4 five_prime_UTR 59586104 59586317 59586104 ID=Msa0338900-mRNA-1:five_prime_utr;Parent=Msa0338900-mRNA-1
chr2_4 five_prime_UTR 59586062 59586070 59586062 ID=Msa0338900-mRNA-1:five_prime_utr;Parent=Msa0338900-mRNA-1
chr2_4 CDS 59585942 59586061 59585942 ID=Msa0338900-mRNA-1:cds;Parent=Msa0338900-mRNA-1
chr2_4 CDS 59585469 59585566 59585469 ID=Msa0338900-mRNA-1:cds;Parent=Msa0338900-mRNA-1
chr2_4 CDS 59585267 59585297 59585267 ID=Msa0338900-mRNA-1:cds;Parent=Msa0338900-mRNA-1
chr2_4 CDS 59584227 59584326 59584227 ID=Msa0338900-mRNA-1:cds;Parent=Msa0338900-mRNA-1
chr2_4 CDS 59579688 59579758 59579688 ID=Msa0338900-mRNA-1:cds;Parent=Msa0338900-mRNA-1
chr2_4 CDS 59579439 59579582 59579439 ID=Msa0338900-mRNA-1:cds;Parent=Msa0338900-mRNA-1
chr2_4 CDS 59579100 59579165 59579100 ID=Msa0338900-mRNA-1:cds;Parent=Msa0338900-mRNA-1
chr2_4 three_prime_UTR 59578866 59579099 59578866 ID=Msa0338900-mRNA-1:three_prime_utr;Parent=Msa0338900-mRNA-1
Gene Sequence

>Msa0338900

ATGGAGAGAGACATAGAGATGAAACTATCAAAGTTTAAGAGAATTTGTGTGTTTTGTGGTAGTAGCCCTGGTAACAAAACTAGCTATAAGGATGCTGCTATTGAACTTGGAAAAGAATTGGTTTCAAGAAATATTGATCTAGTTTATGGAGGAGGCAGCATTGGTTTGATGGGGTTGATTTCTCAAGCTGTTTATGATGGTGGTCGACATGTAATTGGAGTGATTCCCAAAACACTAATGCCAAGAGAGCTTACTGGTGAAACAGTAGGAGAAGTGAAAGCAGTAGCTGACATGCATCAAAGGAAAGCTGAAATGGCTAGAAATTCTGATGCCTTTATAGCCTTACCAGGTGGGTATGGGACACTTGAGGAGCTCCTTGAGGTGATAACATGGGCTCAACTTGGCATCCATGATAAACCGGTGGGATTGCTGAATGTTGATGGATACTACAATTCCTTTTTGACTTTCATCGACAAAGCTGTGGAGGAAGGATTCATTAGCCCCACAGCTCGCCATATTATTGTGTCTGCACCAACACCAAAAGAGCTTGTCAAAAATATGGAGGAGTATTTCCCACAGCATGAAAGAGTTGCCTCCAAGCTAAGCTGGGAAAATGAGCAGCTAGATTAG

Protein sequence

>Msa0338900

MERDIEMKLSKFKRICVFCGSSPGNKTSYKDAAIELGKELVSRNIDLVYGGGSIGLMGLISQAVYDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMARNSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSFLTFIDKAVEEGFISPTARHIIVSAPTPKELVKNMEEYFPQHERVASKLSWENEQLD*