Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0345200 | XP_003600605.1 | 99.048 | 525 | 5 | 0 | 1 | 525 | 1 | 525 | 0.0 | 1053 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0345200 | sp|O62703|CTBL1_BOVIN | 43.878 | 490 | 257 | 10 | 45 | 522 | 77 | 560 | 5.87e-126 | 382 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0345200 | G7J7W2 | 99.048 | 525 | 5 | 0 | 1 | 525 | 1 | 525 | 0.0 | 1053 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa0345200 | 0.828068 | 1.103926e-54 | -8.615850e-47 |
| Msa0007440 | Msa0345200 | 0.806721 | 7.169453e-50 | -8.615850e-47 |
| Msa0027770 | Msa0345200 | 0.812242 | 4.679447e-51 | -8.615850e-47 |
| Msa0032430 | Msa0345200 | 0.800136 | 1.660509e-48 | -8.615850e-47 |
| Msa0033110 | Msa0345200 | 0.818140 | 2.289908e-52 | -8.615850e-47 |
| Msa0033260 | Msa0345200 | 0.822191 | 2.702567e-53 | -8.615850e-47 |
| Msa0054440 | Msa0345200 | 0.812387 | 4.349371e-51 | -8.615850e-47 |
| Msa0054480 | Msa0345200 | 0.817685 | 2.900779e-52 | -8.615850e-47 |
| Msa0067630 | Msa0345200 | 0.819923 | 9.001645e-53 | -8.615850e-47 |
| Msa0075500 | Msa0345200 | 0.803993 | 2.673444e-49 | -8.615850e-47 |
| Msa0079380 | Msa0345200 | 0.801049 | 1.081463e-48 | -8.615850e-47 |
| Msa0090360 | Msa0345200 | 0.820589 | 6.331705e-53 | -8.615850e-47 |
| Msa0091410 | Msa0345200 | 0.814290 | 1.661530e-51 | -8.615850e-47 |
| Msa0105620 | Msa0345200 | 0.806185 | 9.300141e-50 | -8.615850e-47 |
| Msa0115400 | Msa0345200 | 0.810133 | 1.341375e-50 | -8.615850e-47 |
| Msa0127020 | Msa0345200 | 0.817224 | 3.683421e-52 | -8.615850e-47 |
| Msa0137840 | Msa0345200 | 0.817970 | 2.501821e-52 | -8.615850e-47 |
| Msa0144370 | Msa0345200 | 0.802568 | 5.274703e-49 | -8.615850e-47 |
| Msa0145440 | Msa0345200 | 0.809006 | 2.341520e-50 | -8.615850e-47 |
| Msa0150820 | Msa0345200 | 0.810829 | 9.490394e-51 | -8.615850e-47 |
| Msa0169280 | Msa0345200 | 0.816411 | 5.607834e-52 | -8.615850e-47 |
| Msa0172070 | Msa0345200 | 0.804277 | 2.333737e-49 | -8.615850e-47 |
| Msa0184040 | Msa0345200 | 0.821878 | 3.194829e-53 | -8.615850e-47 |
| Msa0189320 | Msa0345200 | 0.803793 | 2.942807e-49 | -8.615850e-47 |
| Msa0241470 | Msa0345200 | 0.825762 | 3.927728e-54 | -8.615850e-47 |
| Msa0279220 | Msa0345200 | 0.846008 | 2.844183e-59 | -8.615850e-47 |
| Msa0279240 | Msa0345200 | 0.856380 | 3.345893e-62 | -8.615850e-47 |
| Msa0309750 | Msa0345200 | 0.810534 | 1.099027e-50 | -8.615850e-47 |
| Msa0309770 | Msa0345200 | 0.862769 | 4.007113e-64 | -8.615850e-47 |
| Msa0318980 | Msa0345200 | 0.860096 | 2.621375e-63 | -8.615850e-47 |
| Msa0326480 | Msa0345200 | 0.800593 | 1.340129e-48 | -8.615850e-47 |
| Msa0345200 | Msa0383800 | 0.805461 | 1.320284e-49 | -8.615850e-47 |
| Msa0345200 | Msa0388700 | 0.813487 | 2.497460e-51 | -8.615850e-47 |
| Msa0345200 | Msa0395820 | 0.801290 | 9.655042e-49 | -8.615850e-47 |
| Msa0345200 | Msa0402650 | 0.824491 | 7.842390e-54 | -8.615850e-47 |
| Msa0345200 | Msa0402790 | 0.814205 | 1.734392e-51 | -8.615850e-47 |
| Msa0345200 | Msa0457960 | 0.802746 | 4.846752e-49 | -8.615850e-47 |
| Msa0345200 | Msa0478020 | 0.815340 | 9.721827e-52 | -8.615850e-47 |
| Msa0345200 | Msa0481530 | 0.842656 | 2.263775e-58 | -8.615850e-47 |
| Msa0345200 | Msa0482130 | 0.811220 | 7.805875e-51 | -8.615850e-47 |
| Msa0345200 | Msa0529890 | 0.834902 | 2.291274e-56 | -8.615850e-47 |
| Msa0345200 | Msa0542090 | 0.820711 | 5.937444e-53 | -8.615850e-47 |
| Msa0345200 | Msa0542130 | 0.819990 | 8.685462e-53 | -8.615850e-47 |
| Msa0345200 | Msa0555450 | 0.806119 | 9.600448e-50 | -8.615850e-47 |
| Msa0345200 | Msa0556060 | 0.803466 | 3.439046e-49 | -8.615850e-47 |
| Msa0345200 | Msa0577500 | 0.805697 | 1.178014e-49 | -8.615850e-47 |
| Msa0345200 | Msa0585560 | 0.839838 | 1.247272e-57 | -8.615850e-47 |
| Msa0345200 | Msa0590990 | 0.801412 | 9.113244e-49 | -8.615850e-47 |
| Msa0345200 | Msa0602690 | 0.804979 | 1.665583e-49 | -8.615850e-47 |
| Msa0345200 | Msa0607050 | 0.802913 | 4.476770e-49 | -8.615850e-47 |
| Msa0345200 | Msa0610430 | 0.816085 | 6.633509e-52 | -8.615850e-47 |
| Msa0345200 | Msa0617640 | 0.811388 | 7.178786e-51 | -8.615850e-47 |
| Msa0345200 | Msa0623790 | 0.801002 | 1.105739e-48 | -8.615850e-47 |
| Msa0345200 | Msa0625720 | 0.834151 | 3.537230e-56 | -8.615850e-47 |
| Msa0345200 | Msa0643560 | 0.818602 | 1.799626e-52 | -8.615850e-47 |
| Msa0345200 | Msa0647500 | 0.812899 | 3.361067e-51 | -8.615850e-47 |
| Msa0345200 | Msa0663390 | 0.841626 | 4.239304e-58 | -8.615850e-47 |
| Msa0345200 | Msa0685140 | 0.807100 | 5.960314e-50 | -8.615850e-47 |
| Msa0345200 | Msa0689260 | 0.804991 | 1.655656e-49 | -8.615850e-47 |
| Msa0345200 | Msa0690150 | 0.801841 | 7.441940e-49 | -8.615850e-47 |
| Msa0345200 | Msa0690860 | 0.801412 | 9.114071e-49 | -8.615850e-47 |
| Msa0345200 | Msa0692830 | 0.822522 | 2.264151e-53 | -8.615850e-47 |
| Msa0345200 | Msa0692950 | 0.825824 | 3.797648e-54 | -8.615850e-47 |
| Msa0345200 | Msa0698540 | 0.816079 | 6.653998e-52 | -8.615850e-47 |
| Msa0345200 | Msa0707250 | 0.844100 | 9.318186e-59 | -8.615850e-47 |
| Msa0345200 | Msa0711780 | 0.837462 | 5.125747e-57 | -8.615850e-47 |
| Msa0345200 | Msa0727550 | 0.821445 | 4.023557e-53 | -8.615850e-47 |
| Msa0345200 | Msa0737600 | 0.814890 | 1.223698e-51 | -8.615850e-47 |
| Msa0345200 | Msa0794670 | 0.861166 | 1.241526e-63 | -8.615850e-47 |
| Msa0345200 | Msa0830540 | 0.801429 | 9.043954e-49 | -8.615850e-47 |
| Msa0345200 | Msa0876810 | 0.806321 | 8.705970e-50 | -8.615850e-47 |
| Msa0345200 | Msa0945440 | 0.810926 | 9.039601e-51 | -8.615850e-47 |
| Msa0345200 | Msa1051200 | 0.821655 | 3.596588e-53 | -8.615850e-47 |
| Msa0345200 | Msa1137700 | 0.813387 | 2.626513e-51 | -8.615850e-47 |
| Msa0345200 | Msa1160590 | 0.815256 | 1.014766e-51 | -8.615850e-47 |
| Msa0345200 | Msa1162270 | 0.805033 | 1.622630e-49 | -8.615850e-47 |
| Msa0345200 | Msa1162780 | 0.801649 | 8.150356e-49 | -8.615850e-47 |
| Msa0345200 | Msa1181250 | 0.812427 | 4.263272e-51 | -8.615850e-47 |
| Msa0345200 | Msa1204530 | 0.815487 | 9.016892e-52 | -8.615850e-47 |
| Msa0345200 | Msa1204630 | 0.803794 | 2.940150e-49 | -8.615850e-47 |
| Msa0345200 | Msa1208880 | 0.849312 | 3.504951e-60 | -8.615850e-47 |
| Msa0345200 | Msa1209200 | 0.814811 | 1.274154e-51 | -8.615850e-47 |
| Msa0345200 | Msa1209760 | 0.800097 | 1.690593e-48 | -8.615850e-47 |
| Msa0345200 | Msa1231840 | 0.803417 | 3.521665e-49 | -8.615850e-47 |
| Msa0345200 | Msa1245930 | 0.849822 | 2.526447e-60 | -8.615850e-47 |
| Msa0345200 | Msa1259060 | 0.848559 | 5.672757e-60 | -8.615850e-47 |
| Msa0345200 | Msa1302640 | 0.801566 | 8.475383e-49 | -8.615850e-47 |
| Msa0345200 | Msa1331000 | 0.812887 | 3.382105e-51 | -8.615850e-47 |
| Msa0345200 | Msa1358250 | 0.806603 | 7.590671e-50 | -8.615850e-47 |
| Msa0345200 | Msa1370070 | -0.806740 | 7.103876e-50 | -8.615850e-47 |
| Msa0345200 | Msa1382560 | 0.802592 | 5.214405e-49 | -8.615850e-47 |
| Msa0345200 | Msa1386780 | 0.827486 | 1.523394e-54 | -8.615850e-47 |
| Msa0345200 | Msa1392780 | 0.803058 | 4.177299e-49 | -8.615850e-47 |
| Msa0345200 | Msa1393570 | 0.845974 | 2.904765e-59 | -8.615850e-47 |
| Msa0345200 | Msa1400580 | 0.848218 | 7.050985e-60 | -8.615850e-47 |
| Msa0345200 | Msa1412530 | 0.800791 | 1.221315e-48 | -8.615850e-47 |
| Msa0345200 | Msa1419870 | 0.819431 | 1.165637e-52 | -8.615850e-47 |
| Msa0345200 | Msa1423350 | 0.802131 | 6.487628e-49 | -8.615850e-47 |
| Msa0345200 | Msa1432420 | 0.823480 | 1.354308e-53 | -8.615850e-47 |
| Msa0345200 | Msa1433390 | 0.815911 | 7.252317e-52 | -8.615850e-47 |
| Msa0345200 | Msa1439550 | 0.852469 | 4.522273e-61 | -8.615850e-47 |
| Msa0345200 | Msa1443850 | 0.808378 | 3.189254e-50 | -8.615850e-47 |
| Msa0345200 | Msa1446950 | 0.801920 | 7.171844e-49 | -8.615850e-47 |
| Msa0345200 | Msa1454480 | 0.818120 | 2.313259e-52 | -8.615850e-47 |
| Msa0345200 | Msa1457920 | 0.808471 | 3.046769e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0345200 | MtrunA17_Chr3g0109531 | 99.048 | 525 | 5 | 0 | 1 | 525 | 1 | 525 | 0.0 | 1053 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0345200 | AT3G02710.1 | 75.614 | 529 | 125 | 2 | 1 | 525 | 1 | 529 | 0.0 | 787 |
Find 138 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACTAGTTGCTTCATTATT+TGG | 0.121094 | 3_1:+4308260 | Msa0345200:CDS |
| TCAGTTGGTTGCTGTCATTT+TGG | 0.177787 | 3_1:+4309500 | Msa0345200:intron |
| AAAGATTCAGAAGTTCTTAA+TGG | 0.254674 | 3_1:+4309928 | Msa0345200:CDS |
| TGATGTTGTTACGTTGATTC+AGG | 0.256713 | 3_1:+4307374 | Msa0345200:CDS |
| GTGGCTGTTGGGGAAGATTA+AGG | 0.265756 | 3_1:+4307629 | Msa0345200:CDS |
| GCAGTATGCATCGGAGATTT+TGG | 0.271538 | 3_1:+4307674 | Msa0345200:CDS |
| GTTGATGCCGTTGGAGAATA+AGG | 0.287924 | 3_1:+4307857 | Msa0345200:CDS |
| GCGAATCGTTCGGGTTGATT+TGG | 0.294786 | 3_1:-4307207 | None:intergenic |
| TATTATGAAGCAGAAGAAAT+TGG | 0.295478 | 3_1:+4307920 | Msa0345200:CDS |
| TTCGATTTCTGTATTTATAC+TGG | 0.299006 | 3_1:+4310137 | Msa0345200:three_prime_UTR |
| TAAGCTTGTGAAGCTCTTCA+TGG | 0.319731 | 3_1:-4307248 | None:intergenic |
| ATCTGGACTTTATACTCTTC+AGG | 0.322599 | 3_1:+4309182 | Msa0345200:CDS |
| TAGGAATATCATGACAATAT+TGG | 0.328004 | 3_1:+4309866 | Msa0345200:intron |
| CTCTTCCTCATCCGAACTCT+TGG | 0.328264 | 3_1:-4307799 | None:intergenic |
| CTTAACAGTGTAAACTTCAT+TGG | 0.328577 | 3_1:+4309970 | Msa0345200:three_prime_UTR |
| TGTGCTCGCTCCTTCTCTTC+TGG | 0.344836 | 3_1:-4309902 | None:intergenic |
| GACAATATTGGCGATCTTGA+TGG | 0.349058 | 3_1:+4309878 | Msa0345200:CDS |
| TCGGAATCCGCGAATCGTTC+GGG | 0.352290 | 3_1:-4307216 | None:intergenic |
| TACGGCGAATCAGAAGAAAT+TGG | 0.359095 | 3_1:+4307716 | Msa0345200:CDS |
| GGATGAGCGGTTGCGGGTGG+TGG | 0.364644 | 3_1:-4307007 | None:intergenic |
| GACGGCGTCGATTGTGGGTT+GGG | 0.368993 | 3_1:-4307106 | None:intergenic |
| TACAATCGTAAACTAGAATC+TGG | 0.374374 | 3_1:+4309165 | Msa0345200:CDS |
| TTCGGAATCCGCGAATCGTT+CGG | 0.376786 | 3_1:-4307217 | None:intergenic |
| TGAGCGGTTGCGGGTGGTGG+TGG | 0.378306 | 3_1:-4307004 | None:intergenic |
| TTGTCGACGGCGTCGATTGT+GGG | 0.393927 | 3_1:-4307111 | None:intergenic |
| TGGCGTATGCCTCCGCGATA+AGG | 0.396871 | 3_1:+4307940 | Msa0345200:CDS |
| CCCCACTAAACCTCTCATTA+GGG | 0.397176 | 3_1:+4306952 | Msa0345200:five_prime_UTR |
| ACGGCGAATCAGAAGAAATT+GGG | 0.402285 | 3_1:+4307717 | Msa0345200:CDS |
| GCGTTTGGATGAGCGGTTGC+GGG | 0.408371 | 3_1:-4307013 | None:intergenic |
| AAGAAATTGGGGCAGATGAA+TGG | 0.410742 | 3_1:+4307729 | Msa0345200:CDS |
| ATGGCATTATAACTGTTGTA+AGG | 0.413293 | 3_1:+4309947 | Msa0345200:exon |
| TGGGGTGGATGTGATGCTTC+AGG | 0.413573 | 3_1:+4307749 | Msa0345200:CDS |
| TTCTGCCACTACCTTAGCTC+AGG | 0.419714 | 3_1:-4306899 | None:intergenic |
| ACGATTCGCGGATTCCGAAT+TGG | 0.425378 | 3_1:+4307221 | Msa0345200:CDS |
| AACGGTCTAAAATTGCTAGA+TGG | 0.425766 | 3_1:-4310213 | None:intergenic |
| AGAAATTGGGGCAGATGAAT+GGG | 0.428528 | 3_1:+4307730 | Msa0345200:CDS |
| GCATGTCAAGGATATACTTC+AGG | 0.429337 | 3_1:+4309695 | Msa0345200:CDS |
| CGGTTGCGGGTGGTGGTGGA+TGG | 0.435184 | 3_1:-4307000 | None:intergenic |
| GCAGAATTTGCATCGGTTGT+CGG | 0.443160 | 3_1:+4307491 | Msa0345200:CDS |
| ATGAGTGCGAGAAGATAGAT+AGG | 0.444249 | 3_1:+4308768 | Msa0345200:CDS |
| AAATCAACCCGAACGATTCG+CGG | 0.444523 | 3_1:+4307209 | Msa0345200:CDS |
| GGATGTGATGCTTCAGGCGG+TGG | 0.444743 | 3_1:+4307755 | Msa0345200:CDS |
| TCAAGACAACTCCCTGCCCC+TGG | 0.447091 | 3_1:-4310179 | None:intergenic |
| CGACGGCGTCGATTGTGGGT+TGG | 0.448251 | 3_1:-4307107 | None:intergenic |
| CTCTTCATGGAGCTCCAATT+CGG | 0.450268 | 3_1:-4307235 | None:intergenic |
| TGAGGTGAAACCGGCGGTGG+CGG | 0.453475 | 3_1:+4307575 | Msa0345200:CDS |
| TGTTGGGGAAGATTAAGGTT+AGG | 0.455452 | 3_1:+4307634 | Msa0345200:CDS |
| GGCGTATGCCTCCGCGATAA+GGG | 0.458877 | 3_1:+4307941 | Msa0345200:CDS |
| CGAGAAGATAGATAGGCTAA+TGG | 0.461422 | 3_1:+4308775 | Msa0345200:CDS |
| GTCAAAGGATCCCAAGAGTT+CGG | 0.461662 | 3_1:+4307788 | Msa0345200:CDS |
| ACGGTACCAGGAGGAGTTAG+AGG | 0.461982 | 3_1:+4308226 | Msa0345200:CDS |
| GAATTTGATTGAGGTGAAAC+CGG | 0.464918 | 3_1:+4307566 | Msa0345200:CDS |
| TCTTCCTCATCCGAACTCTT+GGG | 0.471486 | 3_1:-4307798 | None:intergenic |
| TCAAATTGAGTTTGATGACT+TGG | 0.471831 | 3_1:+4309034 | Msa0345200:CDS |
| TTCGGATGAGGAAGAGATGG+TGG | 0.473430 | 3_1:+4307806 | Msa0345200:CDS |
| TTCTTTCAATCGACGTTCGA+AGG | 0.478492 | 3_1:-4307160 | None:intergenic |
| GTGGAATCTTGAGGGGCTCT+AGG | 0.483156 | 3_1:+4308714 | Msa0345200:CDS |
| AAGTTGTTGAAGTGGCTGTT+GGG | 0.484456 | 3_1:+4307618 | Msa0345200:CDS |
| AACCCTAATGAGAGGTTTAG+TGG | 0.484808 | 3_1:-4306954 | None:intergenic |
| TGGAGCACCGGAGCTTTATC+CGG | 0.487985 | 3_1:+4307281 | Msa0345200:CDS |
| CTTTCCAGGTGGAATCTTGA+GGG | 0.489985 | 3_1:+4308706 | Msa0345200:intron |
| TGCGTTTGGATGAGCGGTTG+CGG | 0.491992 | 3_1:-4307014 | None:intergenic |
| GGTGTCGTTGAATTTGCGTT+TGG | 0.492933 | 3_1:-4307028 | None:intergenic |
| TTCGCTCCTCTAACTCCTCC+TGG | 0.495355 | 3_1:-4308232 | None:intergenic |
| ATTGTCGACGGCGTCGATTG+TGG | 0.496589 | 3_1:-4307112 | None:intergenic |
| GGTTCTTGTTGATGCGCTTG+TGG | 0.498065 | 3_1:+4307443 | Msa0345200:CDS |
| GTTGGGGAAGATTAAGGTTA+GGG | 0.503090 | 3_1:+4307635 | Msa0345200:CDS |
| GGCTAATGGAACTATACATC+AGG | 0.506522 | 3_1:+4308789 | Msa0345200:CDS |
| TTTACATGCATTAGGAAAGA+GGG | 0.508229 | 3_1:-4310021 | None:intergenic |
| AAAAGCTGAAACTGAACGGT+TGG | 0.509025 | 3_1:+4309010 | Msa0345200:CDS |
| TAAAGTCCTCGCTGGAGCAC+CGG | 0.510169 | 3_1:+4307269 | Msa0345200:CDS |
| ACATTGAGGTTAACAAGATC+CGG | 0.510454 | 3_1:-4307300 | None:intergenic |
| TGCGATGACAAATTACCCTC+CGG | 0.510486 | 3_1:+4307974 | Msa0345200:CDS |
| TTTGCATCGGTTGTCGGAGA+AGG | 0.512034 | 3_1:+4307497 | Msa0345200:CDS |
| AACCTTTCCTTATTCTCCAA+CGG | 0.513307 | 3_1:-4307864 | None:intergenic |
| ACCCTAATGAGAGGTTTAGT+GGG | 0.520452 | 3_1:-4306953 | None:intergenic |
| CAAGACAACTCCCTGCCCCT+GGG | 0.523128 | 3_1:-4310178 | None:intergenic |
| AGAGAGATCGATGTCGTTGG+TGG | 0.524918 | 3_1:-4307061 | None:intergenic |
| GAAAGGTTTGTGAAAGCAGA+AGG | 0.526602 | 3_1:+4307879 | Msa0345200:CDS |
| GAGATCGATGTCGTTGGTGG+AGG | 0.529331 | 3_1:-4307058 | None:intergenic |
| GAACAAGAAAGAACGGTACC+AGG | 0.534798 | 3_1:+4308214 | Msa0345200:CDS |
| AATTGAGTTTGATGACTTGG+AGG | 0.536575 | 3_1:+4309037 | Msa0345200:CDS |
| CACAAGCTTAAAGTCCTCGC+TGG | 0.536930 | 3_1:+4307261 | Msa0345200:CDS |
| GACAATTGAGAATTTGATTG+AGG | 0.537691 | 3_1:+4307557 | Msa0345200:CDS |
| ATGTTGTTTGTTGATGCCGT+TGG | 0.538373 | 3_1:+4307848 | Msa0345200:CDS |
| TCAATCGACGTTCGAAGGAG+AGG | 0.538613 | 3_1:-4307155 | None:intergenic |
| TTTCAAATCTTCAACAACAA+TGG | 0.543527 | 3_1:+4306975 | Msa0345200:exon |
| TCTTTCCAGGTGGAATCTTG+AGG | 0.544919 | 3_1:+4308705 | Msa0345200:intron |
| GCATCAACAAGAACCTTAGC+AGG | 0.545350 | 3_1:-4307435 | None:intergenic |
| GGATCCCAAGAGTTCGGATG+AGG | 0.548449 | 3_1:+4307794 | Msa0345200:CDS |
| TGAATTTGCGTTTGGATGAG+CGG | 0.551592 | 3_1:-4307020 | None:intergenic |
| GTCGTTGGTGGAGGATGAAA+CGG | 0.556914 | 3_1:-4307049 | None:intergenic |
| GAAGTTGTTGAAGTGGCTGT+TGG | 0.565011 | 3_1:+4307617 | Msa0345200:CDS |
| CAGACAATCTCCGCCACCGC+CGG | 0.566151 | 3_1:-4307585 | None:intergenic |
| TCGGTTGTCGGAGAAGGATG+CGG | 0.566965 | 3_1:+4307503 | Msa0345200:CDS |
| GAAATTGGGGCAGATGAATG+GGG | 0.568740 | 3_1:+4307731 | Msa0345200:CDS |
| TAAAGCCTGAGCTAAGGTAG+TGG | 0.568999 | 3_1:+4306894 | Msa0345200:five_prime_UTR |
| TCAACAAAACGTTCACAAGC+CGG | 0.570628 | 3_1:-4307993 | None:intergenic |
| ACAAGATCCGGATAAAGCTC+CGG | 0.577304 | 3_1:-4307288 | None:intergenic |
| GATTGAGGTGAAACCGGCGG+TGG | 0.578618 | 3_1:+4307572 | Msa0345200:CDS |
| TTTCCAGGTGGAATCTTGAG+GGG | 0.579676 | 3_1:+4308707 | Msa0345200:intron |
| AAACTAGAAAATTTCCCTAA+CGG | 0.584894 | 3_1:-4310231 | None:intergenic |
| TGCTTGTGCAGAATTTGCAT+CGG | 0.590572 | 3_1:+4307484 | Msa0345200:CDS |
| GAGTTCGGATGAGGAAGAGA+TGG | 0.592926 | 3_1:+4307803 | Msa0345200:CDS |
| TCTTGATGGACCAGAAGAGA+AGG | 0.605271 | 3_1:+4309892 | Msa0345200:CDS |
| ATTGGGGCAGATGAATGGGG+TGG | 0.605769 | 3_1:+4307734 | Msa0345200:CDS |
| GCTTGTGGATTGTAGTGTGT+TGG | 0.607878 | 3_1:+4307458 | Msa0345200:CDS |
| TTTGGATGAGCGGTTGCGGG+TGG | 0.608239 | 3_1:-4307010 | None:intergenic |
| TGAGAATGATGAACCTGCTA+AGG | 0.609377 | 3_1:+4307422 | Msa0345200:CDS |
| AAGAGAGAGATCGATGTCGT+TGG | 0.609485 | 3_1:-4307064 | None:intergenic |
| GTCAGGCATTCACAAATGAG+AGG | 0.612340 | 3_1:+4309630 | Msa0345200:intron |
| AGATTTGAAACCCTAATGAG+AGG | 0.613304 | 3_1:-4306962 | None:intergenic |
| GAGTAAAAGCTGAAACTGAA+CGG | 0.614348 | 3_1:+4309006 | Msa0345200:CDS |
| TTACATGCATTAGGAAAGAG+GGG | 0.617679 | 3_1:-4310020 | None:intergenic |
| CTAATGAGAGGTTTAGTGGG+GGG | 0.618122 | 3_1:-4306950 | None:intergenic |
| TTCAACAAATCAACAATCGA+CGG | 0.618753 | 3_1:-4307327 | None:intergenic |
| GGTGGCGATGTATAAGTCAA+AGG | 0.624239 | 3_1:+4307773 | Msa0345200:CDS |
| CAATCGACGGAACAACATTG+AGG | 0.625918 | 3_1:-4307314 | None:intergenic |
| TGCCGTTGGAGAATAAGGAA+AGG | 0.626114 | 3_1:+4307862 | Msa0345200:CDS |
| TAGTAATAAGCAGTATGCAT+CGG | 0.627164 | 3_1:+4307665 | Msa0345200:CDS |
| AGAAGACGAAGTTGTTGAAG+TGG | 0.628312 | 3_1:+4307610 | Msa0345200:CDS |
| ACTTAGTAAACAGCATGTCA+AGG | 0.628328 | 3_1:+4309683 | Msa0345200:CDS |
| CCCTAATGAGAGGTTTAGTG+GGG | 0.630850 | 3_1:-4306952 | None:intergenic |
| CGGCGAATCAGAAGAAATTG+GGG | 0.632291 | 3_1:+4307718 | Msa0345200:CDS |
| GAGAAAGAAACACTGATATG+TGG | 0.639982 | 3_1:+4310076 | Msa0345200:three_prime_UTR |
| AAAATCAAGTGCCCTTATCG+CGG | 0.652002 | 3_1:-4307952 | None:intergenic |
| GGTGGATGTGATGCTTCAGG+CGG | 0.654680 | 3_1:+4307752 | Msa0345200:CDS |
| AGTTGTTGAAGTGGCTGTTG+GGG | 0.656007 | 3_1:+4307619 | Msa0345200:CDS |
| ATCAAGTGCCCTTATCGCGG+AGG | 0.657323 | 3_1:-4307949 | None:intergenic |
| TGCTGCGGTTTATAATACGC+TGG | 0.663673 | 3_1:+4307533 | Msa0345200:CDS |
| ACAAAACGTTCACAAGCCGG+AGG | 0.666267 | 3_1:-4307990 | None:intergenic |
| TTTGATTGAGGTGAAACCGG+CGG | 0.669349 | 3_1:+4307569 | Msa0345200:CDS |
| CAAAACGTTCACAAGCCGGA+GGG | 0.670414 | 3_1:-4307989 | None:intergenic |
| CCTAATGAGAGGTTTAGTGG+GGG | 0.680119 | 3_1:-4306951 | None:intergenic |
| AAAGCTCCGGTGCTCCAGCG+AGG | 0.693299 | 3_1:-4307275 | None:intergenic |
| CAAGAAAGAACGGTACCAGG+AGG | 0.701118 | 3_1:+4308217 | Msa0345200:CDS |
| AAGACAACTCCCTGCCCCTG+GGG | 0.703050 | 3_1:-4310177 | None:intergenic |
| GGATGCGGATGAGAATGCTG+CGG | 0.727804 | 3_1:+4307518 | Msa0345200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTAAAAAAGAAAAAATTA+AGG | - | chr3_1:4308664-4308683 | None:intergenic | 10.0% |
| !!! | ATATTTTTGTAATTTATAGA+TGG | + | chr3_1:4309128-4309147 | Msa0345200:intron | 10.0% |
| !! | TTGATTGTTATCTTATAAAT+TGG | + | chr3_1:4308135-4308154 | Msa0345200:intron | 15.0% |
| !! | TATTACATAACTAATGATAA+GGG | - | chr3_1:4308358-4308377 | None:intergenic | 15.0% |
| !! | ATATTACATAACTAATGATA+AGG | - | chr3_1:4308359-4308378 | None:intergenic | 15.0% |
| !! | TTTGCTAAATAAAATAAACA+AGG | - | chr3_1:4309103-4309122 | None:intergenic | 15.0% |
| !! | CATATTAAAAAAAACATGTT+TGG | + | chr3_1:4309318-4309337 | Msa0345200:intron | 15.0% |
| !! | ATAAATTAGTCAGTATAAAA+AGG | - | chr3_1:4309470-4309489 | None:intergenic | 15.0% |
| !!! | TTTATATATGATTTTTCAGT+TGG | + | chr3_1:4309485-4309504 | Msa0345200:intron | 15.0% |
| !!! | AAAGTATTAGTTTATATCTC+GGG | - | chr3_1:4308573-4308592 | None:intergenic | 20.0% |
| !!! | CAAAGTATTAGTTTATATCT+CGG | - | chr3_1:4308574-4308593 | None:intergenic | 20.0% |
| !!! | TTTTTTTTAGTAAATACCAG+TGG | + | chr3_1:4309390-4309409 | Msa0345200:intron | 20.0% |
| !! | ACCAAAAATTTAATTAAGTC+AGG | - | chr3_1:4309612-4309631 | None:intergenic | 20.0% |
| !!! | ACTTAATTAAATTTTTGGTC+AGG | + | chr3_1:4309613-4309632 | Msa0345200:intron | 20.0% |
| ! | TTTCAAATCTTCAACAACAA+TGG | + | chr3_1:4306975-4306994 | Msa0345200:exon | 25.0% |
| ! | TATTATGAAGCAGAAGAAAT+TGG | + | chr3_1:4307920-4307939 | Msa0345200:CDS | 25.0% |
| !! | TTCTTGTTCTTTTTACTGAT+GGG | - | chr3_1:4308203-4308222 | None:intergenic | 25.0% |
| !! | TTTCTTGTTCTTTTTACTGA+TGG | - | chr3_1:4308204-4308223 | None:intergenic | 25.0% |
| ! | GTAAAAAGAACAAGAAAGAA+CGG | + | chr3_1:4308207-4308226 | Msa0345200:CDS | 25.0% |
| ! | TAACATGTATACTTTACCAT+TGG | + | chr3_1:4308389-4308408 | Msa0345200:intron | 25.0% |
| !! | AAGTATTAGTTTATATCTCG+GGG | - | chr3_1:4308572-4308591 | None:intergenic | 25.0% |
| ! | CAATCATGAACACAATATAA+GGG | - | chr3_1:4308836-4308855 | None:intergenic | 25.0% |
| ! | TTAATACAGAATGGAACAAA+TGG | - | chr3_1:4308870-4308889 | None:intergenic | 25.0% |
| ! | GTATAGAATCATAAAAGATG+TGG | + | chr3_1:4308921-4308940 | Msa0345200:intron | 25.0% |
| ! | AAATTTAATTAAGTCAGGCA+AGG | - | chr3_1:4309607-4309626 | None:intergenic | 25.0% |
| !! | GCCTGACTTAATTAAATTTT+TGG | + | chr3_1:4309608-4309627 | Msa0345200:intron | 25.0% |
| !! | TATTTTGTTACTGTTAGTGT+TGG | + | chr3_1:4309760-4309779 | Msa0345200:intron | 25.0% |
| ! | TAGGAATATCATGACAATAT+TGG | + | chr3_1:4309866-4309885 | Msa0345200:intron | 25.0% |
| ! | AAAGATTCAGAAGTTCTTAA+TGG | + | chr3_1:4309928-4309947 | Msa0345200:CDS | 25.0% |
| !! | AAACAGATTTTACATGCATT+AGG | - | chr3_1:4310032-4310051 | None:intergenic | 25.0% |
| ! | TTCGATTTCTGTATTTATAC+TGG | + | chr3_1:4310137-4310156 | Msa0345200:three_prime_UTR | 25.0% |
| ! | AAACTAGAAAATTTCCCTAA+CGG | - | chr3_1:4310234-4310253 | None:intergenic | 25.0% |
| !!! | GGAAATTTTCTAGTTTTGAT+AGG | + | chr3_1:4310238-4310257 | Msa0345200:three_prime_UTR | 25.0% |
| !!! | GTTGTTTTAACGTCTATAAT+TGG | + | chr3_1:4310260-4310279 | Msa0345200:three_prime_UTR | 25.0% |
| TTCAACAAATCAACAATCGA+CGG | - | chr3_1:4307330-4307349 | None:intergenic | 30.0% | |
| GACAATTGAGAATTTGATTG+AGG | + | chr3_1:4307557-4307576 | Msa0345200:CDS | 30.0% | |
| TAGTAATAAGCAGTATGCAT+CGG | + | chr3_1:4307665-4307684 | Msa0345200:CDS | 30.0% | |
| !! | TGAACGTTTTGTTGATGTTT+TGG | + | chr3_1:4308001-4308020 | Msa0345200:CDS | 30.0% |
| !! | GAACGTTTTGTTGATGTTTT+GGG | + | chr3_1:4308002-4308021 | Msa0345200:CDS | 30.0% |
| ! | CTACAAAATTGGTTTAGAAG+TGG | - | chr3_1:4308081-4308100 | None:intergenic | 30.0% |
| TCTAGAGAGTTCTACAAAAT+TGG | - | chr3_1:4308092-4308111 | None:intergenic | 30.0% | |
| TCACTAGTTGCTTCATTATT+TGG | + | chr3_1:4308260-4308279 | Msa0345200:CDS | 30.0% | |
| !! | TTGAGTTTTGACATAGTATG+TGG | + | chr3_1:4308306-4308325 | Msa0345200:intron | 30.0% |
| GATGATAGAACTGTCTAATA+CGG | + | chr3_1:4308509-4308528 | Msa0345200:intron | 30.0% | |
| ATGATAGAACTGTCTAATAC+GGG | + | chr3_1:4308510-4308529 | Msa0345200:intron | 30.0% | |
| GCAATCATGAACACAATATA+AGG | - | chr3_1:4308837-4308856 | None:intergenic | 30.0% | |
| !! | TGGAACAAATGGATTAAGTT+CGG | - | chr3_1:4308859-4308878 | None:intergenic | 30.0% |
| TGTTCCATTCTGTATTAATC+TGG | + | chr3_1:4308872-4308891 | Msa0345200:intron | 30.0% | |
| AGAACCAGATTAATACAGAA+TGG | - | chr3_1:4308879-4308898 | None:intergenic | 30.0% | |
| !! | GTATTAATCTGGTTCTAAGT+TGG | + | chr3_1:4308883-4308902 | Msa0345200:intron | 30.0% |
| TTTACTCTATCCGAATATCT+GGG | - | chr3_1:4308993-4309012 | None:intergenic | 30.0% | |
| ! | TTTTACTCTATCCGAATATC+TGG | - | chr3_1:4308994-4309013 | None:intergenic | 30.0% |
| ! | TCAAATTGAGTTTGATGACT+TGG | + | chr3_1:4309034-4309053 | Msa0345200:CDS | 30.0% |
| TACAATCGTAAACTAGAATC+TGG | + | chr3_1:4309165-4309184 | Msa0345200:CDS | 30.0% | |
| ATCTCAACTGCAATTTGAAA+TGG | - | chr3_1:4309371-4309390 | None:intergenic | 30.0% | |
| !! | ATAAAAAGGTGCTGTAAAAC+TGG | - | chr3_1:4309456-4309475 | None:intergenic | 30.0% |
| AAAAGATGCAACTACTTACT+CGG | - | chr3_1:4309541-4309560 | None:intergenic | 30.0% | |
| TGAATTTGAATTTGGGGATT+GGG | - | chr3_1:4309816-4309835 | None:intergenic | 30.0% | |
| AGCTTCTGAATTTGAATTTG+GGG | - | chr3_1:4309822-4309841 | None:intergenic | 30.0% | |
| GAGCTTCTGAATTTGAATTT+GGG | - | chr3_1:4309823-4309842 | None:intergenic | 30.0% | |
| AGAGCTTCTGAATTTGAATT+TGG | - | chr3_1:4309824-4309843 | None:intergenic | 30.0% | |
| ! | TTCAAATTCAGAAGCTCTAA+CGG | + | chr3_1:4309826-4309845 | Msa0345200:intron | 30.0% |
| TCATGATATTCCTAAACCAT+GGG | - | chr3_1:4309860-4309879 | None:intergenic | 30.0% | |
| ATGGCATTATAACTGTTGTA+AGG | + | chr3_1:4309947-4309966 | Msa0345200:exon | 30.0% | |
| CTTAACAGTGTAAACTTCAT+TGG | + | chr3_1:4309970-4309989 | Msa0345200:three_prime_UTR | 30.0% | |
| TTTACATGCATTAGGAAAGA+GGG | - | chr3_1:4310024-4310043 | None:intergenic | 30.0% | |
| ! | TTTTACATGCATTAGGAAAG+AGG | - | chr3_1:4310025-4310044 | None:intergenic | 30.0% |
| ! | GCATGTAAAATCTGTTTTGT+CGG | + | chr3_1:4310035-4310054 | Msa0345200:three_prime_UTR | 30.0% |
| ! | CATGTAAAATCTGTTTTGTC+GGG | + | chr3_1:4310036-4310055 | Msa0345200:three_prime_UTR | 30.0% |
| ! | TAATATATCTTCTTTTCCCC+AGG | + | chr3_1:4310161-4310180 | Msa0345200:three_prime_UTR | 30.0% |
| ! | AATATATCTTCTTTTCCCCA+GGG | + | chr3_1:4310162-4310181 | Msa0345200:three_prime_UTR | 30.0% |
| ! | AGATTTGAAACCCTAATGAG+AGG | - | chr3_1:4306965-4306984 | None:intergenic | 35.0% |
| ACATTGAGGTTAACAAGATC+CGG | - | chr3_1:4307303-4307322 | None:intergenic | 35.0% | |
| !! | TGATGTTGTTACGTTGATTC+AGG | + | chr3_1:4307374-4307393 | Msa0345200:CDS | 35.0% |
| GAATTTGATTGAGGTGAAAC+CGG | + | chr3_1:4307566-4307585 | Msa0345200:CDS | 35.0% | |
| ! | GATTTTGTTGCAGAGTAGTA+CGG | + | chr3_1:4307698-4307717 | Msa0345200:CDS | 35.0% |
| AACCTTTCCTTATTCTCCAA+CGG | - | chr3_1:4307867-4307886 | None:intergenic | 35.0% | |
| ! | ACAGCTTTTGCAGCTTTTAT+GGG | + | chr3_1:4308032-4308051 | Msa0345200:CDS | 35.0% |
| ! | TTTTGCAGCTTTTATGGGTA+AGG | + | chr3_1:4308037-4308056 | Msa0345200:CDS | 35.0% |
| TGCTTCATTATTTGGTAAGC+AGG | + | chr3_1:4308268-4308287 | Msa0345200:intron | 35.0% | |
| ! | GAAATAACTCAAGGTACCAA+TGG | - | chr3_1:4308408-4308427 | None:intergenic | 35.0% |
| TGATAGAACTGTCTAATACG+GGG | + | chr3_1:4308511-4308530 | Msa0345200:intron | 35.0% | |
| TGCATATTTCAATTCACGCA+TGG | - | chr3_1:4308617-4308636 | None:intergenic | 35.0% | |
| TGAGTACTCTATATCTTTCC+AGG | + | chr3_1:4308692-4308711 | Msa0345200:intron | 35.0% | |
| AATGGAACTATACATCAGGT+AGG | + | chr3_1:4308793-4308812 | Msa0345200:intron | 35.0% | |
| GAACACAATATAAGGGAAAG+AGG | - | chr3_1:4308829-4308848 | None:intergenic | 35.0% | |
| GAGTAAAAGCTGAAACTGAA+CGG | + | chr3_1:4309006-4309025 | Msa0345200:CDS | 35.0% | |
| ! | AATTGAGTTTGATGACTTGG+AGG | + | chr3_1:4309037-4309056 | Msa0345200:CDS | 35.0% |
| ATCTGGACTTTATACTCTTC+AGG | + | chr3_1:4309182-4309201 | Msa0345200:CDS | 35.0% | |
| !!! | CTGTCATTTTGGGTCATATT+TGG | + | chr3_1:4309511-4309530 | Msa0345200:CDS | 35.0% |
| ACTTAGTAAACAGCATGTCA+AGG | + | chr3_1:4309683-4309702 | Msa0345200:CDS | 35.0% | |
| CTGAATTTGAATTTGGGGAT+TGG | - | chr3_1:4309817-4309836 | None:intergenic | 35.0% | |
| !!! | TCTAACGGATTATTTTCCCA+TGG | + | chr3_1:4309841-4309860 | Msa0345200:intron | 35.0% |
| ! | GGATTATTTTCCCATGGTTT+AGG | + | chr3_1:4309847-4309866 | Msa0345200:intron | 35.0% |
| GTCATGATATTCCTAAACCA+TGG | - | chr3_1:4309861-4309880 | None:intergenic | 35.0% | |
| TTACATGCATTAGGAAAGAG+GGG | - | chr3_1:4310023-4310042 | None:intergenic | 35.0% | |
| GAGAAAGAAACACTGATATG+TGG | + | chr3_1:4310076-4310095 | Msa0345200:three_prime_UTR | 35.0% | |
| ! | ATATATCTTCTTTTCCCCAG+GGG | + | chr3_1:4310163-4310182 | Msa0345200:three_prime_UTR | 35.0% |
| ! | AACGGTCTAAAATTGCTAGA+TGG | - | chr3_1:4310216-4310235 | None:intergenic | 35.0% |
| ! | TCTAGCAATTTTAGACCGTT+AGG | + | chr3_1:4310216-4310235 | Msa0345200:three_prime_UTR | 35.0% |
| ! | CTAGCAATTTTAGACCGTTA+GGG | + | chr3_1:4310217-4310236 | Msa0345200:three_prime_UTR | 35.0% |
| ACCCTAATGAGAGGTTTAGT+GGG | - | chr3_1:4306956-4306975 | None:intergenic | 40.0% | |
| AACCCTAATGAGAGGTTTAG+TGG | - | chr3_1:4306957-4306976 | None:intergenic | 40.0% | |
| TGAATTTGCGTTTGGATGAG+CGG | - | chr3_1:4307023-4307042 | None:intergenic | 40.0% | |
| !!! | TTTTAGGGTTCGATTGTCGA+CGG | - | chr3_1:4307127-4307146 | None:intergenic | 40.0% |
| !!! | GGAGAGGACGAGTTTTTTTA+GGG | - | chr3_1:4307142-4307161 | None:intergenic | 40.0% |
| !!! | AGGAGAGGACGAGTTTTTTT+AGG | - | chr3_1:4307143-4307162 | None:intergenic | 40.0% |
| TTCTTTCAATCGACGTTCGA+AGG | - | chr3_1:4307163-4307182 | None:intergenic | 40.0% | |
| TAAGCTTGTGAAGCTCTTCA+TGG | - | chr3_1:4307251-4307270 | None:intergenic | 40.0% | |
| TGAGAATGATGAACCTGCTA+AGG | + | chr3_1:4307422-4307441 | Msa0345200:CDS | 40.0% | |
| TGCTTGTGCAGAATTTGCAT+CGG | + | chr3_1:4307484-4307503 | Msa0345200:CDS | 40.0% | |
| AGAAGACGAAGTTGTTGAAG+TGG | + | chr3_1:4307610-4307629 | Msa0345200:CDS | 40.0% | |
| AAGTTGTTGAAGTGGCTGTT+GGG | + | chr3_1:4307618-4307637 | Msa0345200:CDS | 40.0% | |
| TGTTGGGGAAGATTAAGGTT+AGG | + | chr3_1:4307634-4307653 | Msa0345200:CDS | 40.0% | |
| GTTGGGGAAGATTAAGGTTA+GGG | + | chr3_1:4307635-4307654 | Msa0345200:CDS | 40.0% | |
| TACGGCGAATCAGAAGAAAT+TGG | + | chr3_1:4307716-4307735 | Msa0345200:CDS | 40.0% | |
| ACGGCGAATCAGAAGAAATT+GGG | + | chr3_1:4307717-4307736 | Msa0345200:CDS | 40.0% | |
| AAGAAATTGGGGCAGATGAA+TGG | + | chr3_1:4307729-4307748 | Msa0345200:CDS | 40.0% | |
| AGAAATTGGGGCAGATGAAT+GGG | + | chr3_1:4307730-4307749 | Msa0345200:CDS | 40.0% | |
| ! | ATGTTGTTTGTTGATGCCGT+TGG | + | chr3_1:4307848-4307867 | Msa0345200:CDS | 40.0% |
| GAAAGGTTTGTGAAAGCAGA+AGG | + | chr3_1:4307879-4307898 | Msa0345200:CDS | 40.0% | |
| AAAATCAAGTGCCCTTATCG+CGG | - | chr3_1:4307955-4307974 | None:intergenic | 40.0% | |
| TCAACAAAACGTTCACAAGC+CGG | - | chr3_1:4307996-4308015 | None:intergenic | 40.0% | |
| ! | GACAGCTTTTGCAGCTTTTA+TGG | + | chr3_1:4308031-4308050 | Msa0345200:CDS | 40.0% |
| TGACATAGTATGTGGACAGA+CGG | + | chr3_1:4308314-4308333 | Msa0345200:intron | 40.0% | |
| ! | TACCTTGAGTTATTTCGCGA+AGG | + | chr3_1:4308412-4308431 | Msa0345200:intron | 40.0% |
| !! | CGAAGGAGAGATTAACTTGT+TGG | + | chr3_1:4308429-4308448 | Msa0345200:intron | 40.0% |
| GTACTCTATATCTTTCCAGG+TGG | + | chr3_1:4308695-4308714 | Msa0345200:intron | 40.0% | |
| ATGAGTGCGAGAAGATAGAT+AGG | + | chr3_1:4308768-4308787 | Msa0345200:CDS | 40.0% | |
| CGAGAAGATAGATAGGCTAA+TGG | + | chr3_1:4308775-4308794 | Msa0345200:CDS | 40.0% | |
| GGCTAATGGAACTATACATC+AGG | + | chr3_1:4308789-4308808 | Msa0345200:CDS | 40.0% | |
| ! | CTTTTTCCCTCCCAGATATT+CGG | + | chr3_1:4308980-4308999 | Msa0345200:intron | 40.0% |
| AAAAGCTGAAACTGAACGGT+TGG | + | chr3_1:4309010-4309029 | Msa0345200:CDS | 40.0% | |
| ACTACTACCAAGCCATTACT+TGG | - | chr3_1:4309235-4309254 | None:intergenic | 40.0% | |
| TCCATGACTGCTTCAAAACA+TGG | + | chr3_1:4309281-4309300 | Msa0345200:intron | 40.0% | |
| CCATGACTGCTTCAAAACAT+GGG | + | chr3_1:4309282-4309301 | Msa0345200:intron | 40.0% | |
| CATGACTGCTTCAAAACATG+GGG | + | chr3_1:4309283-4309302 | Msa0345200:intron | 40.0% | |
| TTATAAGCAGTAAGCACCAC+TGG | - | chr3_1:4309409-4309428 | None:intergenic | 40.0% | |
| AAACTGGCATCTCATTCAGA+AGG | - | chr3_1:4309440-4309459 | None:intergenic | 40.0% | |
| !! | TCAGTTGGTTGCTGTCATTT+TGG | + | chr3_1:4309500-4309519 | Msa0345200:intron | 40.0% |
| !!! | CAGTTGGTTGCTGTCATTTT+GGG | + | chr3_1:4309501-4309520 | Msa0345200:intron | 40.0% |
| GCATGTCAAGGATATACTTC+AGG | + | chr3_1:4309695-4309714 | Msa0345200:CDS | 40.0% | |
| CTTCAGGTATATATCCTCTG+CGG | + | chr3_1:4309711-4309730 | Msa0345200:intron | 40.0% | |
| TTATTCAATCATAGCCGCAG+AGG | - | chr3_1:4309728-4309747 | None:intergenic | 40.0% | |
| GACAATATTGGCGATCTTGA+TGG | + | chr3_1:4309878-4309897 | Msa0345200:CDS | 40.0% | |
| TAAAGCCTGAGCTAAGGTAG+TGG | + | chr3_1:4306894-4306913 | Msa0345200:five_prime_UTR | 45.0% | |
| CTAATGAGAGGTTTAGTGGG+GGG | - | chr3_1:4306953-4306972 | None:intergenic | 45.0% | |
| CCTAATGAGAGGTTTAGTGG+GGG | - | chr3_1:4306954-4306973 | None:intergenic | 45.0% | |
| CCCTAATGAGAGGTTTAGTG+GGG | - | chr3_1:4306955-4306974 | None:intergenic | 45.0% | |
| CCCCACTAAACCTCTCATTA+GGG | + | chr3_1:4306952-4306971 | Msa0345200:five_prime_UTR | 45.0% | |
| !! | GGTGTCGTTGAATTTGCGTT+TGG | - | chr3_1:4307031-4307050 | None:intergenic | 45.0% |
| AAGAGAGAGATCGATGTCGT+TGG | - | chr3_1:4307067-4307086 | None:intergenic | 45.0% | |
| AAATCAACCCGAACGATTCG+CGG | + | chr3_1:4307209-4307228 | Msa0345200:CDS | 45.0% | |
| CTCTTCATGGAGCTCCAATT+CGG | - | chr3_1:4307238-4307257 | None:intergenic | 45.0% | |
| ACAAGATCCGGATAAAGCTC+CGG | - | chr3_1:4307291-4307310 | None:intergenic | 45.0% | |
| CAATCGACGGAACAACATTG+AGG | - | chr3_1:4307317-4307336 | None:intergenic | 45.0% | |
| GCATCAACAAGAACCTTAGC+AGG | - | chr3_1:4307438-4307457 | None:intergenic | 45.0% | |
| ! | GCTTGTGGATTGTAGTGTGT+TGG | + | chr3_1:4307458-4307477 | Msa0345200:CDS | 45.0% |
| !! | GCAGAATTTGCATCGGTTGT+CGG | + | chr3_1:4307491-4307510 | Msa0345200:CDS | 45.0% |
| TGCTGCGGTTTATAATACGC+TGG | + | chr3_1:4307533-4307552 | Msa0345200:CDS | 45.0% | |
| TTTGATTGAGGTGAAACCGG+CGG | + | chr3_1:4307569-4307588 | Msa0345200:CDS | 45.0% | |
| GAAGTTGTTGAAGTGGCTGT+TGG | + | chr3_1:4307617-4307636 | Msa0345200:CDS | 45.0% | |
| AGTTGTTGAAGTGGCTGTTG+GGG | + | chr3_1:4307619-4307638 | Msa0345200:CDS | 45.0% | |
| ! | GCAGTATGCATCGGAGATTT+TGG | + | chr3_1:4307674-4307693 | Msa0345200:CDS | 45.0% |
| CGGCGAATCAGAAGAAATTG+GGG | + | chr3_1:4307718-4307737 | Msa0345200:CDS | 45.0% | |
| GAAATTGGGGCAGATGAATG+GGG | + | chr3_1:4307731-4307750 | Msa0345200:CDS | 45.0% | |
| GGTGGCGATGTATAAGTCAA+AGG | + | chr3_1:4307773-4307792 | Msa0345200:CDS | 45.0% | |
| GTCAAAGGATCCCAAGAGTT+CGG | + | chr3_1:4307788-4307807 | Msa0345200:CDS | 45.0% | |
| TCTTCCTCATCCGAACTCTT+GGG | - | chr3_1:4307801-4307820 | None:intergenic | 45.0% | |
| GTTGATGCCGTTGGAGAATA+AGG | + | chr3_1:4307857-4307876 | Msa0345200:CDS | 45.0% | |
| TGCCGTTGGAGAATAAGGAA+AGG | + | chr3_1:4307862-4307881 | Msa0345200:CDS | 45.0% | |
| TGCGATGACAAATTACCCTC+CGG | + | chr3_1:4307974-4307993 | Msa0345200:CDS | 45.0% | |
| GAACAAGAAAGAACGGTACC+AGG | + | chr3_1:4308214-4308233 | Msa0345200:CDS | 45.0% | |
| CTCCTTCGCGAAATAACTCA+AGG | - | chr3_1:4308417-4308436 | None:intergenic | 45.0% | |
| AGAACTGTCTAATACGGGGA+TGG | + | chr3_1:4308515-4308534 | Msa0345200:intron | 45.0% | |
| ATATCTCGGGGACAGTTCAA+GGG | - | chr3_1:4308560-4308579 | None:intergenic | 45.0% | |
| TATATCTCGGGGACAGTTCA+AGG | - | chr3_1:4308561-4308580 | None:intergenic | 45.0% | |
| TCTTTCCAGGTGGAATCTTG+AGG | + | chr3_1:4308705-4308724 | Msa0345200:intron | 45.0% | |
| CTTTCCAGGTGGAATCTTGA+GGG | + | chr3_1:4308706-4308725 | Msa0345200:intron | 45.0% | |
| TTTCCAGGTGGAATCTTGAG+GGG | + | chr3_1:4308707-4308726 | Msa0345200:intron | 45.0% | |
| CTCTATCCGAATATCTGGGA+GGG | - | chr3_1:4308989-4309008 | None:intergenic | 45.0% | |
| ACTCTATCCGAATATCTGGG+AGG | - | chr3_1:4308990-4309009 | None:intergenic | 45.0% | |
| GACCAACTGATGCCAAGTAA+TGG | + | chr3_1:4309220-4309239 | Msa0345200:intron | 45.0% | |
| AGCCATTACTTGGCATCAGT+TGG | - | chr3_1:4309225-4309244 | None:intergenic | 45.0% | |
| ACTGATGCCAAGTAATGGCT+TGG | + | chr3_1:4309225-4309244 | Msa0345200:intron | 45.0% | |
| !!! | CCCATGTTTTGAAGCAGTCA+TGG | - | chr3_1:4309285-4309304 | None:intergenic | 45.0% |
| GTCAGGCATTCACAAATGAG+AGG | + | chr3_1:4309630-4309649 | Msa0345200:intron | 45.0% | |
| ! | TCTTGATGGACCAGAAGAGA+AGG | + | chr3_1:4309892-4309911 | Msa0345200:CDS | 45.0% |
| TTCTGCCACTACCTTAGCTC+AGG | - | chr3_1:4306902-4306921 | None:intergenic | 50.0% | |
| CCCCCACTAAACCTCTCATT+AGG | + | chr3_1:4306951-4306970 | Msa0345200:five_prime_UTR | 50.0% | |
| ! | GTCGTTGGTGGAGGATGAAA+CGG | - | chr3_1:4307052-4307071 | None:intergenic | 50.0% |
| AGAGAGATCGATGTCGTTGG+TGG | - | chr3_1:4307064-4307083 | None:intergenic | 50.0% | |
| TCAATCGACGTTCGAAGGAG+AGG | - | chr3_1:4307158-4307177 | None:intergenic | 50.0% | |
| !! | GCGAATCGTTCGGGTTGATT+TGG | - | chr3_1:4307210-4307229 | None:intergenic | 50.0% |
| TTCGGAATCCGCGAATCGTT+CGG | - | chr3_1:4307220-4307239 | None:intergenic | 50.0% | |
| ACGATTCGCGGATTCCGAAT+TGG | + | chr3_1:4307221-4307240 | Msa0345200:CDS | 50.0% | |
| CACAAGCTTAAAGTCCTCGC+TGG | + | chr3_1:4307261-4307280 | Msa0345200:CDS | 50.0% | |
| GGTTCTTGTTGATGCGCTTG+TGG | + | chr3_1:4307443-4307462 | Msa0345200:CDS | 50.0% | |
| !! | TTTGCATCGGTTGTCGGAGA+AGG | + | chr3_1:4307497-4307516 | Msa0345200:CDS | 50.0% |
| GTGGCTGTTGGGGAAGATTA+AGG | + | chr3_1:4307629-4307648 | Msa0345200:CDS | 50.0% | |
| CTCTTCCTCATCCGAACTCT+TGG | - | chr3_1:4307802-4307821 | None:intergenic | 50.0% | |
| GAGTTCGGATGAGGAAGAGA+TGG | + | chr3_1:4307803-4307822 | Msa0345200:CDS | 50.0% | |
| TTCGGATGAGGAAGAGATGG+TGG | + | chr3_1:4307806-4307825 | Msa0345200:CDS | 50.0% | |
| CAAAACGTTCACAAGCCGGA+GGG | - | chr3_1:4307992-4308011 | None:intergenic | 50.0% | |
| ACAAAACGTTCACAAGCCGG+AGG | - | chr3_1:4307993-4308012 | None:intergenic | 50.0% | |
| CAAGAAAGAACGGTACCAGG+AGG | + | chr3_1:4308217-4308236 | Msa0345200:CDS | 50.0% | |
| TATCTCGGGGACAGTTCAAG+GGG | - | chr3_1:4308559-4308578 | None:intergenic | 50.0% | |
| CTGGCATCTCATTCAGAAGG+CGG | - | chr3_1:4309437-4309456 | None:intergenic | 50.0% | |
| ! | TGTTTTGTCGGGAGAACGAG+AGG | + | chr3_1:4310047-4310066 | Msa0345200:three_prime_UTR | 50.0% |
| GAGAGGTTTAGTGGGGGGTT+TGG | - | chr3_1:4306948-4306967 | None:intergenic | 55.0% | |
| TGCGTTTGGATGAGCGGTTG+CGG | - | chr3_1:4307017-4307036 | None:intergenic | 55.0% | |
| ! | GAGATCGATGTCGTTGGTGG+AGG | - | chr3_1:4307061-4307080 | None:intergenic | 55.0% |
| !! | TTGTCGACGGCGTCGATTGT+GGG | - | chr3_1:4307114-4307133 | None:intergenic | 55.0% |
| !! | ATTGTCGACGGCGTCGATTG+TGG | - | chr3_1:4307115-4307134 | None:intergenic | 55.0% |
| TCGGAATCCGCGAATCGTTC+GGG | - | chr3_1:4307219-4307238 | None:intergenic | 55.0% | |
| TAAAGTCCTCGCTGGAGCAC+CGG | + | chr3_1:4307269-4307288 | Msa0345200:CDS | 55.0% | |
| !! | TGGAGCACCGGAGCTTTATC+CGG | + | chr3_1:4307281-4307300 | Msa0345200:CDS | 55.0% |
| TCGGTTGTCGGAGAAGGATG+CGG | + | chr3_1:4307503-4307522 | Msa0345200:CDS | 55.0% | |
| GGATGCGGATGAGAATGCTG+CGG | + | chr3_1:4307518-4307537 | Msa0345200:CDS | 55.0% | |
| ATTGGGGCAGATGAATGGGG+TGG | + | chr3_1:4307734-4307753 | Msa0345200:CDS | 55.0% | |
| TGGGGTGGATGTGATGCTTC+AGG | + | chr3_1:4307749-4307768 | Msa0345200:CDS | 55.0% | |
| GGTGGATGTGATGCTTCAGG+CGG | + | chr3_1:4307752-4307771 | Msa0345200:CDS | 55.0% | |
| GGATCCCAAGAGTTCGGATG+AGG | + | chr3_1:4307794-4307813 | Msa0345200:CDS | 55.0% | |
| ATCAAGTGCCCTTATCGCGG+AGG | - | chr3_1:4307952-4307971 | None:intergenic | 55.0% | |
| ACGGTACCAGGAGGAGTTAG+AGG | + | chr3_1:4308226-4308245 | Msa0345200:CDS | 55.0% | |
| TTCGCTCCTCTAACTCCTCC+TGG | - | chr3_1:4308235-4308254 | None:intergenic | 55.0% | |
| ATCTCGGGGACAGTTCAAGG+GGG | - | chr3_1:4308558-4308577 | None:intergenic | 55.0% | |
| GTGGAATCTTGAGGGGCTCT+AGG | + | chr3_1:4308714-4308733 | Msa0345200:CDS | 55.0% | |
| TGTGCTCGCTCCTTCTCTTC+TGG | - | chr3_1:4309905-4309924 | None:intergenic | 55.0% | |
| ! | ATCTTCTTTTCCCCAGGGGC+AGG | + | chr3_1:4310167-4310186 | Msa0345200:three_prime_UTR | 55.0% |
| ! | TCTTCTTTTCCCCAGGGGCA+GGG | + | chr3_1:4310168-4310187 | Msa0345200:three_prime_UTR | 55.0% |
| TTTGGATGAGCGGTTGCGGG+TGG | - | chr3_1:4307013-4307032 | None:intergenic | 60.0% | |
| GCGTTTGGATGAGCGGTTGC+GGG | - | chr3_1:4307016-4307035 | None:intergenic | 60.0% | |
| !! | GACGGCGTCGATTGTGGGTT+GGG | - | chr3_1:4307109-4307128 | None:intergenic | 60.0% |
| GATTGAGGTGAAACCGGCGG+TGG | + | chr3_1:4307572-4307591 | Msa0345200:CDS | 60.0% | |
| GGATGTGATGCTTCAGGCGG+TGG | + | chr3_1:4307755-4307774 | Msa0345200:CDS | 60.0% | |
| TGGCGTATGCCTCCGCGATA+AGG | + | chr3_1:4307940-4307959 | Msa0345200:CDS | 60.0% | |
| GGCGTATGCCTCCGCGATAA+GGG | + | chr3_1:4307941-4307960 | Msa0345200:CDS | 60.0% | |
| TCTCGGGGACAGTTCAAGGG+GGG | - | chr3_1:4308557-4308576 | None:intergenic | 60.0% | |
| GAGCCCCTCAAGATTCCACC+TGG | - | chr3_1:4308713-4308732 | None:intergenic | 60.0% | |
| AAGACAACTCCCTGCCCCTG+GGG | - | chr3_1:4310180-4310199 | None:intergenic | 60.0% | |
| CAAGACAACTCCCTGCCCCT+GGG | - | chr3_1:4310181-4310200 | None:intergenic | 60.0% | |
| TCAAGACAACTCCCTGCCCC+TGG | - | chr3_1:4310182-4310201 | None:intergenic | 60.0% | |
| !! | CGACGGCGTCGATTGTGGGT+TGG | - | chr3_1:4307110-4307129 | None:intergenic | 65.0% |
| AAAGCTCCGGTGCTCCAGCG+AGG | - | chr3_1:4307278-4307297 | None:intergenic | 65.0% | |
| TGAGGTGAAACCGGCGGTGG+CGG | + | chr3_1:4307575-4307594 | Msa0345200:CDS | 65.0% | |
| CAGACAATCTCCGCCACCGC+CGG | - | chr3_1:4307588-4307607 | None:intergenic | 65.0% | |
| !! | CGGTTGCGGGTGGTGGTGGA+TGG | - | chr3_1:4307003-4307022 | None:intergenic | 70.0% |
| ! | TGAGCGGTTGCGGGTGGTGG+TGG | - | chr3_1:4307007-4307026 | None:intergenic | 70.0% |
| GGATGAGCGGTTGCGGGTGG+TGG | - | chr3_1:4307010-4307029 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 4306893 | 4310324 | 4306893 | ID=Msa0345200;Name=Msa0345200 |
| chr3_1 | mRNA | 4306893 | 4310324 | 4306893 | ID=Msa0345200-mRNA-1;Parent=Msa0345200;Name=Msa0345200-mRNA-1;_AED=0.09;_eAED=0.09;_QI=101|1|1|1|1|1|8|366|525 |
| chr3_1 | exon | 4306893 | 4308058 | 4306893 | ID=Msa0345200-mRNA-1:exon:1367;Parent=Msa0345200-mRNA-1 |
| chr3_1 | exon | 4308197 | 4308281 | 4308197 | ID=Msa0345200-mRNA-1:exon:1368;Parent=Msa0345200-mRNA-1 |
| chr3_1 | exon | 4308714 | 4308810 | 4308714 | ID=Msa0345200-mRNA-1:exon:1369;Parent=Msa0345200-mRNA-1 |
| chr3_1 | exon | 4308995 | 4309058 | 4308995 | ID=Msa0345200-mRNA-1:exon:1370;Parent=Msa0345200-mRNA-1 |
| chr3_1 | exon | 4309147 | 4309203 | 4309147 | ID=Msa0345200-mRNA-1:exon:1371;Parent=Msa0345200-mRNA-1 |
| chr3_1 | exon | 4309504 | 4309541 | 4309504 | ID=Msa0345200-mRNA-1:exon:1372;Parent=Msa0345200-mRNA-1 |
| chr3_1 | exon | 4309635 | 4309716 | 4309635 | ID=Msa0345200-mRNA-1:exon:1373;Parent=Msa0345200-mRNA-1 |
| chr3_1 | exon | 4309869 | 4310324 | 4309869 | ID=Msa0345200-mRNA-1:exon:1374;Parent=Msa0345200-mRNA-1 |
| chr3_1 | five_prime_UTR | 4306893 | 4306993 | 4306893 | ID=Msa0345200-mRNA-1:five_prime_utr;Parent=Msa0345200-mRNA-1 |
| chr3_1 | CDS | 4306994 | 4308058 | 4306994 | ID=Msa0345200-mRNA-1:cds;Parent=Msa0345200-mRNA-1 |
| chr3_1 | CDS | 4308197 | 4308281 | 4308197 | ID=Msa0345200-mRNA-1:cds;Parent=Msa0345200-mRNA-1 |
| chr3_1 | CDS | 4308714 | 4308810 | 4308714 | ID=Msa0345200-mRNA-1:cds;Parent=Msa0345200-mRNA-1 |
| chr3_1 | CDS | 4308995 | 4309058 | 4308995 | ID=Msa0345200-mRNA-1:cds;Parent=Msa0345200-mRNA-1 |
| chr3_1 | CDS | 4309147 | 4309203 | 4309147 | ID=Msa0345200-mRNA-1:cds;Parent=Msa0345200-mRNA-1 |
| chr3_1 | CDS | 4309504 | 4309541 | 4309504 | ID=Msa0345200-mRNA-1:cds;Parent=Msa0345200-mRNA-1 |
| chr3_1 | CDS | 4309635 | 4309716 | 4309635 | ID=Msa0345200-mRNA-1:cds;Parent=Msa0345200-mRNA-1 |
| chr3_1 | CDS | 4309869 | 4309958 | 4309869 | ID=Msa0345200-mRNA-1:cds;Parent=Msa0345200-mRNA-1 |
| chr3_1 | three_prime_UTR | 4309959 | 4310324 | 4309959 | ID=Msa0345200-mRNA-1:three_prime_utr;Parent=Msa0345200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
