Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1310050 | sp|Q9M1C7|AB9C_ARATH | 65.926 | 135 | 46 | 0 | 1 | 135 | 957 | 1091 | 9.72e-53 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1310050 | A0A2Z6NK40 | 94.815 | 135 | 7 | 0 | 1 | 135 | 402 | 536 | 4.27e-86 | 271 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008330 | Msa1310050 | 0.807553 | 4.778705e-50 | -8.615850e-47 |
| Msa0026120 | Msa1310050 | 0.805161 | 1.525697e-49 | -8.615850e-47 |
| Msa0035090 | Msa1310050 | 0.806791 | 6.929754e-50 | -8.615850e-47 |
| Msa0039200 | Msa1310050 | 0.803174 | 3.953177e-49 | -8.615850e-47 |
| Msa0040190 | Msa1310050 | 0.810697 | 1.013185e-50 | -8.615850e-47 |
| Msa0046860 | Msa1310050 | 0.814066 | 1.861447e-51 | -8.615850e-47 |
| Msa0053480 | Msa1310050 | 0.805153 | 1.531305e-49 | -8.615850e-47 |
| Msa0055650 | Msa1310050 | 0.819482 | 1.135162e-52 | -8.615850e-47 |
| Msa0086820 | Msa1310050 | 0.801435 | 9.014834e-49 | -8.615850e-47 |
| Msa0087880 | Msa1310050 | 0.800703 | 1.272484e-48 | -8.615850e-47 |
| Msa0112800 | Msa1310050 | 0.806162 | 9.404042e-50 | -8.615850e-47 |
| Msa0119000 | Msa1310050 | 0.815148 | 1.072122e-51 | -8.615850e-47 |
| Msa0120310 | Msa1310050 | 0.804757 | 1.853298e-49 | -8.615850e-47 |
| Msa0610850 | Msa1310050 | 0.828511 | 8.633003e-55 | -8.615850e-47 |
| Msa0619480 | Msa1310050 | 0.825843 | 3.757873e-54 | -8.615850e-47 |
| Msa0622400 | Msa1310050 | 0.817279 | 3.581534e-52 | -8.615850e-47 |
| Msa0626890 | Msa1310050 | 0.830962 | 2.185396e-55 | -8.615850e-47 |
| Msa0659640 | Msa1310050 | 0.820210 | 7.735237e-53 | -8.615850e-47 |
| Msa0664110 | Msa1310050 | 0.811213 | 7.834636e-51 | -8.615850e-47 |
| Msa0664130 | Msa1310050 | 0.815102 | 1.097781e-51 | -8.615850e-47 |
| Msa0665010 | Msa1310050 | 0.813970 | 1.954606e-51 | -8.615850e-47 |
| Msa0693560 | Msa1310050 | 0.812426 | 4.265680e-51 | -8.615850e-47 |
| Msa0707870 | Msa1310050 | 0.809801 | 1.581330e-50 | -8.615850e-47 |
| Msa0713530 | Msa1310050 | 0.811588 | 6.495436e-51 | -8.615850e-47 |
| Msa0714160 | Msa1310050 | 0.800943 | 1.136985e-48 | -8.615850e-47 |
| Msa0729780 | Msa1310050 | 0.806548 | 7.799000e-50 | -8.615850e-47 |
| Msa0733570 | Msa1310050 | 0.813790 | 2.141678e-51 | -8.615850e-47 |
| Msa0736330 | Msa1310050 | 0.814175 | 1.761002e-51 | -8.615850e-47 |
| Msa0747660 | Msa1310050 | 0.816710 | 4.807062e-52 | -8.615850e-47 |
| Msa0755590 | Msa1310050 | 0.803777 | 2.965035e-49 | -8.615850e-47 |
| Msa0774680 | Msa1310050 | 0.811833 | 5.745976e-51 | -8.615850e-47 |
| Msa0778060 | Msa1310050 | 0.830100 | 3.551240e-55 | -8.615850e-47 |
| Msa0797210 | Msa1310050 | 0.808415 | 3.132310e-50 | -8.615850e-47 |
| Msa0835010 | Msa1310050 | 0.804065 | 2.582835e-49 | -8.615850e-47 |
| Msa0839730 | Msa1310050 | 0.814688 | 1.356141e-51 | -8.615850e-47 |
| Msa0840570 | Msa1310050 | 0.809855 | 1.539385e-50 | -8.615850e-47 |
| Msa0130120 | Msa1310050 | 0.814504 | 1.489732e-51 | -8.615850e-47 |
| Msa0133670 | Msa1310050 | 0.802597 | 5.202000e-49 | -8.615850e-47 |
| Msa0133880 | Msa1310050 | 0.801314 | 9.547494e-49 | -8.615850e-47 |
| Msa0134550 | Msa1310050 | 0.818582 | 1.817854e-52 | -8.615850e-47 |
| Msa0143360 | Msa1310050 | 0.827147 | 1.837034e-54 | -8.615850e-47 |
| Msa0144510 | Msa1310050 | 0.805973 | 1.030461e-49 | -8.615850e-47 |
| Msa0148590 | Msa1310050 | 0.820179 | 7.862726e-53 | -8.615850e-47 |
| Msa0162330 | Msa1310050 | 0.814542 | 1.460951e-51 | -8.615850e-47 |
| Msa0163010 | Msa1310050 | 0.803820 | 2.904544e-49 | -8.615850e-47 |
| Msa0166580 | Msa1310050 | 0.804282 | 2.327598e-49 | -8.615850e-47 |
| Msa0174800 | Msa1310050 | 0.823711 | 1.195691e-53 | -8.615850e-47 |
| Msa0184120 | Msa1310050 | 0.803558 | 3.292202e-49 | -8.615850e-47 |
| Msa0187560 | Msa1310050 | 0.820186 | 7.834356e-53 | -8.615850e-47 |
| Msa0187820 | Msa1310050 | 0.810309 | 1.229243e-50 | -8.615850e-47 |
| Msa0189050 | Msa1310050 | 0.802664 | 5.038766e-49 | -8.615850e-47 |
| Msa0198140 | Msa1310050 | 0.820872 | 5.452490e-53 | -8.615850e-47 |
| Msa0198220 | Msa1310050 | 0.827848 | 1.246971e-54 | -8.615850e-47 |
| Msa0201910 | Msa1310050 | 0.800258 | 1.568237e-48 | -8.615850e-47 |
| Msa0207220 | Msa1310050 | 0.811759 | 5.962077e-51 | -8.615850e-47 |
| Msa0207530 | Msa1310050 | 0.837070 | 6.454531e-57 | -8.615850e-47 |
| Msa0207900 | Msa1310050 | 0.843790 | 1.128230e-58 | -8.615850e-47 |
| Msa0207990 | Msa1310050 | 0.807977 | 3.882714e-50 | -8.615850e-47 |
| Msa0218480 | Msa1310050 | 0.853960 | 1.691223e-61 | -8.615850e-47 |
| Msa0218590 | Msa1310050 | 0.852245 | 5.240544e-61 | -8.615850e-47 |
| Msa0221880 | Msa1310050 | 0.807791 | 4.254314e-50 | -8.615850e-47 |
| Msa0222510 | Msa1310050 | 0.814641 | 1.389070e-51 | -8.615850e-47 |
| Msa0226580 | Msa1310050 | 0.809749 | 1.622728e-50 | -8.615850e-47 |
| Msa0231310 | Msa1310050 | 0.806020 | 1.007473e-49 | -8.615850e-47 |
| Msa1232640 | Msa1310050 | 0.805534 | 1.274560e-49 | -8.615850e-47 |
| Msa1245300 | Msa1310050 | 0.915824 | 3.719279e-85 | -8.615850e-47 |
| Msa1251960 | Msa1310050 | 0.829492 | 4.994222e-55 | -8.615850e-47 |
| Msa1252040 | Msa1310050 | 0.822902 | 1.847692e-53 | -8.615850e-47 |
| Msa1262740 | Msa1310050 | 0.807830 | 4.172178e-50 | -8.615850e-47 |
| Msa1264230 | Msa1310050 | 0.826524 | 2.588387e-54 | -8.615850e-47 |
| Msa1266570 | Msa1310050 | 0.818908 | 1.532950e-52 | -8.615850e-47 |
| Msa1302920 | Msa1310050 | 0.817726 | 2.840121e-52 | -8.615850e-47 |
| Msa1310050 | Msa1310260 | 0.830355 | 3.077697e-55 | -8.615850e-47 |
| Msa1310050 | Msa1310300 | 0.809374 | 1.952967e-50 | -8.615850e-47 |
| Msa1310050 | Msa1329820 | 0.803483 | 3.412218e-49 | -8.615850e-47 |
| Msa1310050 | Msa1332180 | 0.822622 | 2.146079e-53 | -8.615850e-47 |
| Msa1310050 | Msa1343540 | 0.838530 | 2.722835e-57 | -8.615850e-47 |
| Msa1310050 | Msa1351560 | 0.812873 | 3.404604e-51 | -8.615850e-47 |
| Msa1310050 | Msa1370830 | 0.808914 | 2.450138e-50 | -8.615850e-47 |
| Msa1310050 | Msa1381720 | 0.810426 | 1.159736e-50 | -8.615850e-47 |
| Msa1310050 | Msa1385940 | 0.805574 | 1.249985e-49 | -8.615850e-47 |
| Msa1310050 | Msa1388230 | 0.802264 | 6.091699e-49 | -8.615850e-47 |
| Msa1310050 | Msa1393600 | 0.810167 | 1.318909e-50 | -8.615850e-47 |
| Msa1310050 | Msa1400600 | 0.813770 | 2.163188e-51 | -8.615850e-47 |
| Msa1310050 | Msa1405190 | 0.825166 | 5.437083e-54 | -8.615850e-47 |
| Msa1310050 | Msa1413880 | 0.810083 | 1.375089e-50 | -8.615850e-47 |
| Msa1310050 | Msa1415120 | 0.800641 | 1.310489e-48 | -8.615850e-47 |
| Msa1310050 | Msa1419040 | 0.818984 | 1.473498e-52 | -8.615850e-47 |
| Msa1310050 | Msa1433650 | 0.820259 | 7.539255e-53 | -8.615850e-47 |
| Msa1310050 | Msa1439160 | 0.839806 | 1.270857e-57 | -8.615850e-47 |
| Msa1310050 | Msa1448890 | 0.801801 | 7.587004e-49 | -8.615850e-47 |
| Msa0369750 | Msa1310050 | 0.821945 | 3.081625e-53 | -8.615850e-47 |
| Msa0370510 | Msa1310050 | 0.802631 | 5.120038e-49 | -8.615850e-47 |
| Msa0379720 | Msa1310050 | 0.829291 | 5.587619e-55 | -8.615850e-47 |
| Msa0387170 | Msa1310050 | 0.839651 | 1.394486e-57 | -8.615850e-47 |
| Msa0390950 | Msa1310050 | 0.808835 | 2.547794e-50 | -8.615850e-47 |
| Msa0416990 | Msa1310050 | 0.837940 | 3.863985e-57 | -8.615850e-47 |
| Msa0417130 | Msa1310050 | 0.839637 | 1.406497e-57 | -8.615850e-47 |
| Msa0420080 | Msa1310050 | 0.808316 | 3.288451e-50 | -8.615850e-47 |
| Msa0426990 | Msa1310050 | 0.827442 | 1.561353e-54 | -8.615850e-47 |
| Msa0429100 | Msa1310050 | 0.837217 | 5.922774e-57 | -8.615850e-47 |
| Msa0429130 | Msa1310050 | 0.827627 | 1.409053e-54 | -8.615850e-47 |
| Msa0433350 | Msa1310050 | 0.829656 | 4.556732e-55 | -8.615850e-47 |
| Msa0451370 | Msa1310050 | 0.830704 | 2.527973e-55 | -8.615850e-47 |
| Msa0463960 | Msa1310050 | 0.818390 | 2.009574e-52 | -8.615850e-47 |
| Msa0464500 | Msa1310050 | 0.804572 | 2.025865e-49 | -8.615850e-47 |
| Msa0473450 | Msa1310050 | 0.803309 | 3.706386e-49 | -8.615850e-47 |
| Msa0475830 | Msa1310050 | 0.826680 | 2.375566e-54 | -8.615850e-47 |
| Msa0477070 | Msa1310050 | 0.855943 | 4.493094e-62 | -8.615850e-47 |
| Msa0481620 | Msa1310050 | 0.831143 | 1.972550e-55 | -8.615850e-47 |
| Msa0981300 | Msa1310050 | 0.810972 | 8.834042e-51 | -8.615850e-47 |
| Msa0983030 | Msa1310050 | 0.800285 | 1.548597e-48 | -8.615850e-47 |
| Msa1008960 | Msa1310050 | 0.800155 | 1.645310e-48 | -8.615850e-47 |
| Msa1029190 | Msa1310050 | 0.818764 | 1.653303e-52 | -8.615850e-47 |
| Msa1031220 | Msa1310050 | 0.808547 | 2.934898e-50 | -8.615850e-47 |
| Msa1038420 | Msa1310050 | 0.815323 | 9.805941e-52 | -8.615850e-47 |
| Msa1042380 | Msa1310050 | 0.824368 | 8.381651e-54 | -8.615850e-47 |
| Msa1049440 | Msa1310050 | 0.823820 | 1.127673e-53 | -8.615850e-47 |
| Msa1071460 | Msa1310050 | 0.808015 | 3.811486e-50 | -8.615850e-47 |
| Msa0244370 | Msa1310050 | 0.800336 | 1.511487e-48 | -8.615850e-47 |
| Msa0258280 | Msa1310050 | 0.802763 | 4.808078e-49 | -8.615850e-47 |
| Msa0263470 | Msa1310050 | 0.813789 | 2.143047e-51 | -8.615850e-47 |
| Msa0270610 | Msa1310050 | 0.802765 | 4.802324e-49 | -8.615850e-47 |
| Msa0270640 | Msa1310050 | 0.823792 | 1.144819e-53 | -8.615850e-47 |
| Msa0278340 | Msa1310050 | 0.822539 | 2.243960e-53 | -8.615850e-47 |
| Msa0282880 | Msa1310050 | 0.812202 | 4.774606e-51 | -8.615850e-47 |
| Msa0288280 | Msa1310050 | 0.810588 | 1.069667e-50 | -8.615850e-47 |
| Msa0301300 | Msa1310050 | 0.801448 | 8.961881e-49 | -8.615850e-47 |
| Msa0321180 | Msa1310050 | 0.807647 | 4.564460e-50 | -8.615850e-47 |
| Msa0321200 | Msa1310050 | 0.808476 | 3.039250e-50 | -8.615850e-47 |
| Msa0324390 | Msa1310050 | 0.804490 | 2.107016e-49 | -8.615850e-47 |
| Msa0324430 | Msa1310050 | 0.800041 | 1.735559e-48 | -8.615850e-47 |
| Msa0338610 | Msa1310050 | 0.824629 | 7.277254e-54 | -8.615850e-47 |
| Msa0359230 | Msa1310050 | 0.811956 | 5.401651e-51 | -8.615850e-47 |
| Msa1108530 | Msa1310050 | 0.800546 | 1.369915e-48 | -8.615850e-47 |
| Msa1111200 | Msa1310050 | 0.806222 | 9.134246e-50 | -8.615850e-47 |
| Msa1122480 | Msa1310050 | 0.801358 | 9.348370e-49 | -8.615850e-47 |
| Msa1125100 | Msa1310050 | 0.824355 | 8.444764e-54 | -8.615850e-47 |
| Msa1125150 | Msa1310050 | 0.820460 | 6.780569e-53 | -8.615850e-47 |
| Msa1129320 | Msa1310050 | 0.816921 | 4.308797e-52 | -8.615850e-47 |
| Msa1154750 | Msa1310050 | 0.829562 | 4.801847e-55 | -8.615850e-47 |
| Msa1186010 | Msa1310050 | 0.803138 | 4.021662e-49 | -8.615850e-47 |
| Msa1203210 | Msa1310050 | 0.809600 | 1.746122e-50 | -8.615850e-47 |
| Msa1204110 | Msa1310050 | 0.822460 | 2.340784e-53 | -8.615850e-47 |
| Msa1208070 | Msa1310050 | 0.818732 | 1.681047e-52 | -8.615850e-47 |
| Msa1211100 | Msa1310050 | 0.907994 | 2.772441e-81 | -8.615850e-47 |
| Msa1211120 | Msa1310050 | 0.910331 | 2.111648e-82 | -8.615850e-47 |
| Msa1211280 | Msa1310050 | 0.807346 | 5.285623e-50 | -8.615850e-47 |
| Msa1215660 | Msa1310050 | 0.806502 | 7.972857e-50 | -8.615850e-47 |
| Msa1218720 | Msa1310050 | 0.800234 | 1.586109e-48 | -8.615850e-47 |
| Msa0493640 | Msa1310050 | 0.856336 | 3.446996e-62 | -8.615850e-47 |
| Msa0509500 | Msa1310050 | 0.830796 | 2.400597e-55 | -8.615850e-47 |
| Msa0509510 | Msa1310050 | 0.836146 | 1.110182e-56 | -8.615850e-47 |
| Msa0512770 | Msa1310050 | 0.804720 | 1.886846e-49 | -8.615850e-47 |
| Msa0521440 | Msa1310050 | 0.856995 | 2.206592e-62 | -8.615850e-47 |
| Msa0564000 | Msa1310050 | 0.817384 | 3.391219e-52 | -8.615850e-47 |
| Msa0569630 | Msa1310050 | 0.809470 | 1.862137e-50 | -8.615850e-47 |
| Msa0575450 | Msa1310050 | 0.815181 | 1.054255e-51 | -8.615850e-47 |
| Msa0578890 | Msa1310050 | 0.810831 | 9.477622e-51 | -8.615850e-47 |
| Msa0587060 | Msa1310050 | 0.822708 | 2.049583e-53 | -8.615850e-47 |
| Msa0591570 | Msa1310050 | 0.822545 | 2.237510e-53 | -8.615850e-47 |
| Msa0595240 | Msa1310050 | 0.824459 | 7.978999e-54 | -8.615850e-47 |
| Msa0848980 | Msa1310050 | 0.807454 | 5.014614e-50 | -8.615850e-47 |
| Msa0866960 | Msa1310050 | 0.848397 | 6.290429e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1310050 | MtrunA17_Chr8g0337121 | 98.519 | 135 | 2 | 0 | 1 | 135 | 961 | 1095 | 2.48e-88 | 280 |
| Msa1310050 | MtrunA17_Chr8g0337191 | 94.815 | 135 | 7 | 0 | 1 | 135 | 941 | 1075 | 4.85e-84 | 267 |
| Msa1310050 | MtrunA17_Chr5g0445741 | 54.074 | 135 | 62 | 0 | 1 | 135 | 952 | 1086 | 1.34e-44 | 155 |
| Msa1310050 | MtrunA17_Chr5g0445671 | 51.852 | 135 | 65 | 0 | 1 | 135 | 561 | 695 | 1.62e-41 | 146 |
| Msa1310050 | MtrunA17_Chr5g0412721 | 50.370 | 135 | 67 | 0 | 1 | 135 | 947 | 1081 | 8.89e-41 | 144 |
| Msa1310050 | MtrunA17_Chr3g0101481 | 52.593 | 135 | 64 | 0 | 1 | 135 | 957 | 1091 | 6.55e-40 | 141 |
| Msa1310050 | MtrunA17_Chr3g0101441 | 47.407 | 135 | 71 | 0 | 1 | 135 | 764 | 898 | 1.92e-37 | 134 |
| Msa1310050 | MtrunA17_Chr3g0101461 | 45.185 | 135 | 74 | 0 | 1 | 135 | 764 | 898 | 3.24e-35 | 128 |
| Msa1310050 | MtrunA17_Chr1g0183191 | 45.185 | 135 | 74 | 0 | 1 | 135 | 986 | 1120 | 5.42e-35 | 127 |
| Msa1310050 | MtrunA17_Chr7g0262191 | 45.185 | 135 | 74 | 0 | 1 | 135 | 986 | 1120 | 8.58e-34 | 124 |
| Msa1310050 | MtrunA17_Chr3g0101471 | 45.926 | 135 | 73 | 0 | 1 | 135 | 762 | 896 | 1.61e-33 | 123 |
| Msa1310050 | MtrunA17_Chr5g0412931 | 69.863 | 73 | 22 | 0 | 63 | 135 | 7 | 79 | 2.06e-32 | 112 |
| Msa1310050 | MtrunA17_Chr8g0376961 | 40.000 | 135 | 77 | 1 | 1 | 135 | 904 | 1034 | 3.95e-27 | 105 |
| Msa1310050 | MtrunA17_Chr3g0085281 | 39.370 | 127 | 77 | 0 | 9 | 135 | 917 | 1043 | 1.36e-25 | 100 |
| Msa1310050 | MtrunA17_Chr6g0463151 | 31.034 | 116 | 80 | 0 | 20 | 135 | 767 | 882 | 1.04e-21 | 89.7 |
| Msa1310050 | MtrunA17_Chr6g0463141 | 33.871 | 124 | 82 | 0 | 12 | 135 | 966 | 1089 | 4.88e-21 | 87.8 |
| Msa1310050 | MtrunA17_Chr6g0463391 | 31.897 | 116 | 79 | 0 | 20 | 135 | 135 | 250 | 5.35e-21 | 87.4 |
| Msa1310050 | MtrunA17_Chr2g0295911 | 33.835 | 133 | 87 | 1 | 3 | 135 | 966 | 1097 | 1.18e-20 | 86.7 |
| Msa1310050 | MtrunA17_Chr6g0463131 | 29.851 | 134 | 92 | 1 | 2 | 135 | 934 | 1065 | 3.59e-20 | 85.1 |
| Msa1310050 | MtrunA17_Chr6g0463181 | 32.759 | 116 | 78 | 0 | 20 | 135 | 933 | 1048 | 5.87e-20 | 84.7 |
| Msa1310050 | MtrunA17_Chr6g0463201 | 30.172 | 116 | 81 | 0 | 20 | 135 | 955 | 1070 | 8.17e-20 | 84.3 |
| Msa1310050 | MtrunA17_Chr8g0359291 | 31.034 | 116 | 80 | 0 | 20 | 135 | 131 | 246 | 2.23e-19 | 82.8 |
| Msa1310050 | MtrunA17_Chr8g0341811 | 41.593 | 113 | 66 | 0 | 23 | 135 | 771 | 883 | 3.03e-19 | 82.4 |
| Msa1310050 | MtrunA17_Chr6g0472531 | 29.032 | 124 | 88 | 0 | 12 | 135 | 892 | 1015 | 5.83e-19 | 81.6 |
| Msa1310050 | MtrunA17_Chr8g0341751 | 38.938 | 113 | 69 | 0 | 23 | 135 | 768 | 880 | 6.77e-19 | 81.6 |
| Msa1310050 | MtrunA17_Chr6g0471281 | 32.759 | 116 | 78 | 0 | 20 | 135 | 950 | 1065 | 1.07e-18 | 80.9 |
| Msa1310050 | MtrunA17_Chr2g0295901 | 35.338 | 133 | 85 | 1 | 3 | 135 | 963 | 1094 | 1.71e-18 | 80.5 |
| Msa1310050 | MtrunA17_Chr6g0463211 | 30.172 | 116 | 81 | 0 | 20 | 135 | 988 | 1103 | 1.96e-18 | 80.1 |
| Msa1310050 | MtrunA17_Chr6g0484351 | 35.398 | 113 | 73 | 0 | 23 | 135 | 136 | 248 | 2.59e-18 | 79.7 |
| Msa1310050 | MtrunA17_Chr1g0195691 | 33.333 | 129 | 86 | 0 | 7 | 135 | 981 | 1109 | 4.97e-18 | 79.0 |
| Msa1310050 | MtrunA17_Chr6g0463121 | 29.104 | 134 | 93 | 1 | 2 | 135 | 933 | 1064 | 7.68e-18 | 78.6 |
| Msa1310050 | MtrunA17_Chr8g0353541 | 38.053 | 113 | 70 | 0 | 23 | 135 | 552 | 664 | 9.31e-18 | 78.2 |
| Msa1310050 | MtrunA17_Chr8g0341851 | 36.607 | 112 | 70 | 1 | 23 | 134 | 944 | 1054 | 1.15e-17 | 78.2 |
| Msa1310050 | MtrunA17_Chr8g0363771 | 36.800 | 125 | 78 | 1 | 3 | 127 | 963 | 1086 | 1.21e-17 | 78.2 |
| Msa1310050 | MtrunA17_Chr8g0341761 | 37.168 | 113 | 71 | 0 | 23 | 135 | 929 | 1041 | 2.10e-17 | 77.4 |
| Msa1310050 | MtrunA17_Chr2g0295921 | 33.835 | 133 | 87 | 1 | 3 | 135 | 979 | 1110 | 3.88e-17 | 76.6 |
| Msa1310050 | MtrunA17_Chr8g0353781 | 36.283 | 113 | 72 | 0 | 23 | 135 | 935 | 1047 | 6.34e-17 | 75.9 |
| Msa1310050 | MtrunA17_Chr1g0202221 | 32.979 | 94 | 63 | 0 | 42 | 135 | 907 | 1000 | 1.99e-14 | 68.9 |
| Msa1310050 | MtrunA17_Chr2g0333911 | 34.545 | 110 | 64 | 1 | 3 | 104 | 475 | 584 | 5.96e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1310050 | AT3G60160.3 | 65.926 | 135 | 46 | 0 | 1 | 135 | 921 | 1055 | 9.78e-54 | 181 |
| Msa1310050 | AT3G60160.1 | 65.926 | 135 | 46 | 0 | 1 | 135 | 957 | 1091 | 9.88e-54 | 181 |
| Msa1310050 | AT3G60160.2 | 65.926 | 135 | 46 | 0 | 1 | 135 | 957 | 1091 | 1.44e-53 | 181 |
| Msa1310050 | AT3G60970.1 | 65.185 | 135 | 47 | 0 | 1 | 135 | 504 | 638 | 2.05e-53 | 180 |
| Msa1310050 | AT3G13080.1 | 48.148 | 135 | 70 | 0 | 1 | 135 | 971 | 1105 | 2.48e-41 | 146 |
| Msa1310050 | AT3G13080.2 | 48.148 | 135 | 70 | 0 | 1 | 135 | 971 | 1105 | 2.76e-41 | 145 |
| Msa1310050 | AT3G13080.5 | 48.148 | 135 | 70 | 0 | 1 | 135 | 971 | 1105 | 3.22e-41 | 145 |
| Msa1310050 | AT3G13080.3 | 48.148 | 135 | 70 | 0 | 1 | 135 | 971 | 1105 | 6.42e-41 | 144 |
| Msa1310050 | AT3G13080.4 | 48.148 | 135 | 70 | 0 | 1 | 135 | 971 | 1105 | 6.42e-41 | 144 |
| Msa1310050 | AT3G13100.2 | 49.630 | 135 | 68 | 0 | 1 | 135 | 698 | 832 | 3.68e-39 | 139 |
| Msa1310050 | AT3G13100.1 | 49.630 | 135 | 68 | 0 | 1 | 135 | 943 | 1077 | 4.06e-39 | 139 |
| Msa1310050 | AT3G13090.1 | 50.370 | 135 | 67 | 0 | 1 | 135 | 921 | 1055 | 5.27e-39 | 139 |
| Msa1310050 | AT1G04120.3 | 45.926 | 135 | 73 | 0 | 1 | 135 | 935 | 1069 | 1.61e-35 | 129 |
| Msa1310050 | AT1G04120.1 | 45.926 | 135 | 73 | 0 | 1 | 135 | 970 | 1104 | 1.20e-34 | 127 |
| Msa1310050 | AT1G04120.2 | 45.926 | 135 | 73 | 0 | 1 | 135 | 970 | 1104 | 1.25e-34 | 127 |
| Msa1310050 | AT3G62700.1 | 38.519 | 135 | 81 | 1 | 1 | 135 | 1001 | 1133 | 4.61e-24 | 96.7 |
| Msa1310050 | AT2G47800.1 | 38.843 | 121 | 74 | 0 | 15 | 135 | 990 | 1110 | 1.18e-23 | 95.5 |
| Msa1310050 | AT3G59140.1 | 30.172 | 116 | 81 | 0 | 20 | 135 | 928 | 1043 | 1.70e-18 | 80.9 |
| Msa1310050 | AT3G21250.2 | 32.407 | 108 | 73 | 0 | 13 | 120 | 929 | 1036 | 2.04e-13 | 66.2 |
| Msa1310050 | AT3G21250.5 | 32.407 | 108 | 73 | 0 | 13 | 120 | 924 | 1031 | 2.08e-13 | 66.2 |
| Msa1310050 | AT3G21250.1 | 32.407 | 108 | 73 | 0 | 13 | 120 | 918 | 1025 | 2.10e-13 | 66.2 |
| Msa1310050 | AT3G21250.4 | 32.407 | 108 | 73 | 0 | 13 | 120 | 935 | 1042 | 2.16e-13 | 66.2 |
| Msa1310050 | AT3G21250.6 | 32.407 | 108 | 73 | 0 | 13 | 120 | 513 | 620 | 2.52e-13 | 65.9 |
| Msa1310050 | AT3G21250.3 | 32.407 | 108 | 73 | 0 | 13 | 120 | 513 | 620 | 2.52e-13 | 65.9 |
| Msa1310050 | AT2G34660.3 | 29.752 | 121 | 81 | 1 | 19 | 135 | 671 | 791 | 7.48e-12 | 62.0 |
| Msa1310050 | AT2G34660.1 | 29.752 | 121 | 81 | 1 | 19 | 135 | 958 | 1078 | 1.31e-11 | 61.2 |
| Msa1310050 | AT2G34660.2 | 29.752 | 121 | 81 | 1 | 19 | 135 | 958 | 1078 | 1.31e-11 | 61.2 |
| Msa1310050 | AT1G71330.1 | 36.765 | 68 | 43 | 0 | 1 | 68 | 243 | 310 | 7.31e-11 | 58.5 |
Find 47 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCATACTACTTATTTATA+TGG | 0.208589 | 8_4:+6611511 | Msa1310050:CDS |
| TACTAGCAATCTGAAGTATT+TGG | 0.212641 | 8_4:-6611427 | None:intergenic |
| TCTTATTTGACAACTGTTAA+AGG | 0.232000 | 8_4:+6611362 | Msa1310050:five_prime_UTR |
| AGGAAATAATGATGGAAAAT+TGG | 0.247233 | 8_4:+6611289 | Msa1310050:five_prime_UTR |
| TATATGGTACTTTCTGTTGC+TGG | 0.296420 | 8_4:+6611527 | Msa1310050:CDS |
| TTCTCAATAATACAAATTCT+TGG | 0.297494 | 8_4:+6611846 | Msa1310050:CDS |
| TTCAGATTGCTAGTAACTAT+TGG | 0.313936 | 8_4:+6611435 | Msa1310050:five_prime_UTR |
| ATGCATTCTCCTTCAGGTAT+TGG | 0.318185 | 8_4:-6611188 | None:intergenic |
| TTGGAAATGGCAAACAAAAT+AGG | 0.340282 | 8_4:+6611813 | Msa1310050:CDS |
| CATATGCAAATTGCAGTTAC+TGG | 0.340989 | 8_4:-6611921 | None:intergenic |
| TAGGTGATGCATTCTCCTTC+AGG | 0.351497 | 8_4:-6611194 | None:intergenic |
| TCTGGTTCCAATCATACTAT+TGG | 0.359328 | 8_4:+6611391 | Msa1310050:five_prime_UTR |
| GCATATCAAAAGAAGTTTAC+TGG | 0.372881 | 8_4:+6611339 | Msa1310050:five_prime_UTR |
| TGTTCAAGATTCTTCCAGTT+GGG | 0.378652 | 8_4:-6611673 | None:intergenic |
| ACAGATGAAGAAAGAGAAAC+AGG | 0.386522 | 8_4:+6611314 | Msa1310050:five_prime_UTR |
| ATGAAATTCATATCAAATAT+AGG | 0.388540 | 8_4:-6611494 | None:intergenic |
| TAGTAACTATTGGATGGCTT+GGG | 0.396537 | 8_4:+6611445 | Msa1310050:exon |
| CAGTAACTGCAATTTGCATA+TGG | 0.413335 | 8_4:+6611922 | Msa1310050:CDS |
| AACTGTTAAAGGAGGAATTC+TGG | 0.416593 | 8_4:+6611373 | Msa1310050:five_prime_UTR |
| CTAGTAACTATTGGATGGCT+TGG | 0.422711 | 8_4:+6611444 | Msa1310050:exon |
| CAACTGGAAGAATCTTGAAC+AGG | 0.440244 | 8_4:+6611675 | Msa1310050:CDS |
| GACTGTGCCAATAGTATGAT+TGG | 0.452797 | 8_4:-6611398 | None:intergenic |
| TTTCCTTTGCTTTCTGTAGG+AGG | 0.481657 | 8_4:-6611272 | None:intergenic |
| CACTATTGCGGTGATGTGTC+AGG | 0.486718 | 8_4:+6611869 | Msa1310050:CDS |
| GAAAGCAAAGGAAATAATGA+TGG | 0.495444 | 8_4:+6611281 | Msa1310050:five_prime_UTR |
| CTGTTCAAGATTCTTCCAGT+TGG | 0.496736 | 8_4:-6611674 | None:intergenic |
| GGCTCTCAGAAGAACACAAA+GGG | 0.505052 | 8_4:-6611552 | None:intergenic |
| AAGTGTGCTAGACTTGGAAA+TGG | 0.507205 | 8_4:+6611800 | Msa1310050:CDS |
| AGATCAAAGTGTGCTAGACT+TGG | 0.514062 | 8_4:+6611794 | Msa1310050:CDS |
| GATTGCTAGTAACTATTGGA+TGG | 0.515013 | 8_4:+6611439 | Msa1310050:exon |
| TTATTTCCTTTGCTTTCTGT+AGG | 0.517012 | 8_4:-6611275 | None:intergenic |
| TGTTCTTCTGAGAGCCATGT+TGG | 0.519340 | 8_4:+6611559 | Msa1310050:CDS |
| TGGTGTTAAATGTTGGACTT+TGG | 0.540169 | 8_4:+6611579 | Msa1310050:CDS |
| GTTCAAGATTCTTCCAGTTG+GGG | 0.540756 | 8_4:-6611672 | None:intergenic |
| GCCATGTTGGTGTTAAATGT+TGG | 0.555974 | 8_4:+6611572 | Msa1310050:CDS |
| ACAAATTCTTGGCACTATTG+CGG | 0.583616 | 8_4:+6611857 | Msa1310050:CDS |
| TTCAGAACTTGAGTTTGAGT+AGG | 0.592279 | 8_4:-6611213 | None:intergenic |
| GTCTAGCACACTTTGATCTG+TGG | 0.602235 | 8_4:-6611790 | None:intergenic |
| AAATGGCAAACAAAATAGGA+TGG | 0.606363 | 8_4:+6611817 | Msa1310050:CDS |
| CGGTGATGTGTCAGGCAGCA+TGG | 0.618291 | 8_4:+6611877 | Msa1310050:CDS |
| TATTTGACAACTGTTAAAGG+AGG | 0.629244 | 8_4:+6611365 | Msa1310050:five_prime_UTR |
| TAGCACACTTTGATCTGTGG+AGG | 0.631377 | 8_4:-6611787 | None:intergenic |
| AATCCTCCTACAGAAAGCAA+AGG | 0.632280 | 8_4:+6611269 | Msa1310050:five_prime_UTR |
| AACTGGAAGAATCTTGAACA+GGG | 0.654633 | 8_4:+6611676 | Msa1310050:CDS |
| AATTTAAATCCAATACCTGA+AGG | 0.669118 | 8_4:+6611179 | Msa1310050:five_prime_UTR |
| TGGCTCTCAGAAGAACACAA+AGG | 0.694455 | 8_4:-6611553 | None:intergenic |
| TCCAACATTTAACACCAACA+TGG | 0.707190 | 8_4:-6611573 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAAATTCATATCAAATAT+AGG | - | chr8_4:6611497-6611516 | None:intergenic | 15.0% |
| !! | TTTCATACTACTTATTTATA+TGG | + | chr8_4:6611511-6611530 | Msa1310050:CDS | 15.0% |
| !! | ATGAAATTCATATCAAATAT+AGG | - | chr8_4:6611497-6611516 | None:intergenic | 15.0% |
| !! | TTTCATACTACTTATTTATA+TGG | + | chr8_4:6611511-6611530 | Msa1310050:CDS | 15.0% |
| !! | ATATTGAAAGTCTTAATTTC+AGG | + | chr8_4:6611764-6611783 | Msa1310050:intron | 20.0% |
| !! | TTCTCAATAATACAAATTCT+TGG | + | chr8_4:6611846-6611865 | Msa1310050:CDS | 20.0% |
| !! | ATATTGAAAGTCTTAATTTC+AGG | + | chr8_4:6611764-6611783 | Msa1310050:intron | 20.0% |
| !! | TTCTCAATAATACAAATTCT+TGG | + | chr8_4:6611846-6611865 | Msa1310050:CDS | 20.0% |
| ! | AATTTAAATCCAATACCTGA+AGG | + | chr8_4:6611179-6611198 | Msa1310050:five_prime_UTR | 25.0% |
| !! | AGGAAATAATGATGGAAAAT+TGG | + | chr8_4:6611289-6611308 | Msa1310050:five_prime_UTR | 25.0% |
| !! | TCTTATTTGACAACTGTTAA+AGG | + | chr8_4:6611362-6611381 | Msa1310050:five_prime_UTR | 25.0% |
| ! | TAGAATCAAAAAATGACATG+GGG | - | chr8_4:6611652-6611671 | None:intergenic | 25.0% |
| ! | GTAGAATCAAAAAATGACAT+GGG | - | chr8_4:6611653-6611672 | None:intergenic | 25.0% |
| ! | AATTTAAATCCAATACCTGA+AGG | + | chr8_4:6611179-6611198 | Msa1310050:five_prime_UTR | 25.0% |
| !! | AGGAAATAATGATGGAAAAT+TGG | + | chr8_4:6611289-6611308 | Msa1310050:five_prime_UTR | 25.0% |
| !! | TCTTATTTGACAACTGTTAA+AGG | + | chr8_4:6611362-6611381 | Msa1310050:five_prime_UTR | 25.0% |
| ! | TAGAATCAAAAAATGACATG+GGG | - | chr8_4:6611652-6611671 | None:intergenic | 25.0% |
| ! | GTAGAATCAAAAAATGACAT+GGG | - | chr8_4:6611653-6611672 | None:intergenic | 25.0% |
| TTATTTCCTTTGCTTTCTGT+AGG | - | chr8_4:6611278-6611297 | None:intergenic | 30.0% | |
| GAAAGCAAAGGAAATAATGA+TGG | + | chr8_4:6611281-6611300 | Msa1310050:five_prime_UTR | 30.0% | |
| GCATATCAAAAGAAGTTTAC+TGG | + | chr8_4:6611339-6611358 | Msa1310050:five_prime_UTR | 30.0% | |
| TATTTGACAACTGTTAAAGG+AGG | + | chr8_4:6611365-6611384 | Msa1310050:five_prime_UTR | 30.0% | |
| ! | TACTAGCAATCTGAAGTATT+TGG | - | chr8_4:6611430-6611449 | None:intergenic | 30.0% |
| TTCAGATTGCTAGTAACTAT+TGG | + | chr8_4:6611435-6611454 | Msa1310050:five_prime_UTR | 30.0% | |
| AGAATCAAAAAATGACATGG+GGG | - | chr8_4:6611651-6611670 | None:intergenic | 30.0% | |
| GGTAGAATCAAAAAATGACA+TGG | - | chr8_4:6611654-6611673 | None:intergenic | 30.0% | |
| TTGGAAATGGCAAACAAAAT+AGG | + | chr8_4:6611813-6611832 | Msa1310050:CDS | 30.0% | |
| AAATGGCAAACAAAATAGGA+TGG | + | chr8_4:6611817-6611836 | Msa1310050:CDS | 30.0% | |
| TTATTTCCTTTGCTTTCTGT+AGG | - | chr8_4:6611278-6611297 | None:intergenic | 30.0% | |
| GAAAGCAAAGGAAATAATGA+TGG | + | chr8_4:6611281-6611300 | Msa1310050:five_prime_UTR | 30.0% | |
| GCATATCAAAAGAAGTTTAC+TGG | + | chr8_4:6611339-6611358 | Msa1310050:five_prime_UTR | 30.0% | |
| TATTTGACAACTGTTAAAGG+AGG | + | chr8_4:6611365-6611384 | Msa1310050:five_prime_UTR | 30.0% | |
| ! | TACTAGCAATCTGAAGTATT+TGG | - | chr8_4:6611430-6611449 | None:intergenic | 30.0% |
| TTCAGATTGCTAGTAACTAT+TGG | + | chr8_4:6611435-6611454 | Msa1310050:five_prime_UTR | 30.0% | |
| AGAATCAAAAAATGACATGG+GGG | - | chr8_4:6611651-6611670 | None:intergenic | 30.0% | |
| GGTAGAATCAAAAAATGACA+TGG | - | chr8_4:6611654-6611673 | None:intergenic | 30.0% | |
| TTGGAAATGGCAAACAAAAT+AGG | + | chr8_4:6611813-6611832 | Msa1310050:CDS | 30.0% | |
| AAATGGCAAACAAAATAGGA+TGG | + | chr8_4:6611817-6611836 | Msa1310050:CDS | 30.0% | |
| TTCAGAACTTGAGTTTGAGT+AGG | - | chr8_4:6611216-6611235 | None:intergenic | 35.0% | |
| ACAGATGAAGAAAGAGAAAC+AGG | + | chr8_4:6611314-6611333 | Msa1310050:five_prime_UTR | 35.0% | |
| AACTGTTAAAGGAGGAATTC+TGG | + | chr8_4:6611373-6611392 | Msa1310050:five_prime_UTR | 35.0% | |
| ! | TCTGGTTCCAATCATACTAT+TGG | + | chr8_4:6611391-6611410 | Msa1310050:five_prime_UTR | 35.0% |
| GATTGCTAGTAACTATTGGA+TGG | + | chr8_4:6611439-6611458 | Msa1310050:exon | 35.0% | |
| TAGTAACTATTGGATGGCTT+GGG | + | chr8_4:6611445-6611464 | Msa1310050:exon | 35.0% | |
| TATATGGTACTTTCTGTTGC+TGG | + | chr8_4:6611527-6611546 | Msa1310050:CDS | 35.0% | |
| TCCAACATTTAACACCAACA+TGG | - | chr8_4:6611576-6611595 | None:intergenic | 35.0% | |
| ! | TGGTGTTAAATGTTGGACTT+TGG | + | chr8_4:6611579-6611598 | Msa1310050:CDS | 35.0% |
| !!! | TTTTTTGATTCTACCCCAAC+TGG | + | chr8_4:6611659-6611678 | Msa1310050:CDS | 35.0% |
| TGTTCAAGATTCTTCCAGTT+GGG | - | chr8_4:6611676-6611695 | None:intergenic | 35.0% | |
| AACTGGAAGAATCTTGAACA+GGG | + | chr8_4:6611676-6611695 | Msa1310050:CDS | 35.0% | |
| ACAAATTCTTGGCACTATTG+CGG | + | chr8_4:6611857-6611876 | Msa1310050:CDS | 35.0% | |
| CATATGCAAATTGCAGTTAC+TGG | - | chr8_4:6611924-6611943 | None:intergenic | 35.0% | |
| CAGTAACTGCAATTTGCATA+TGG | + | chr8_4:6611922-6611941 | Msa1310050:CDS | 35.0% | |
| TTCAGAACTTGAGTTTGAGT+AGG | - | chr8_4:6611216-6611235 | None:intergenic | 35.0% | |
| ACAGATGAAGAAAGAGAAAC+AGG | + | chr8_4:6611314-6611333 | Msa1310050:five_prime_UTR | 35.0% | |
| AACTGTTAAAGGAGGAATTC+TGG | + | chr8_4:6611373-6611392 | Msa1310050:five_prime_UTR | 35.0% | |
| ! | TCTGGTTCCAATCATACTAT+TGG | + | chr8_4:6611391-6611410 | Msa1310050:five_prime_UTR | 35.0% |
| GATTGCTAGTAACTATTGGA+TGG | + | chr8_4:6611439-6611458 | Msa1310050:exon | 35.0% | |
| TAGTAACTATTGGATGGCTT+GGG | + | chr8_4:6611445-6611464 | Msa1310050:exon | 35.0% | |
| TATATGGTACTTTCTGTTGC+TGG | + | chr8_4:6611527-6611546 | Msa1310050:CDS | 35.0% | |
| TCCAACATTTAACACCAACA+TGG | - | chr8_4:6611576-6611595 | None:intergenic | 35.0% | |
| ! | TGGTGTTAAATGTTGGACTT+TGG | + | chr8_4:6611579-6611598 | Msa1310050:CDS | 35.0% |
| !!! | TTTTTTGATTCTACCCCAAC+TGG | + | chr8_4:6611659-6611678 | Msa1310050:CDS | 35.0% |
| TGTTCAAGATTCTTCCAGTT+GGG | - | chr8_4:6611676-6611695 | None:intergenic | 35.0% | |
| AACTGGAAGAATCTTGAACA+GGG | + | chr8_4:6611676-6611695 | Msa1310050:CDS | 35.0% | |
| ACAAATTCTTGGCACTATTG+CGG | + | chr8_4:6611857-6611876 | Msa1310050:CDS | 35.0% | |
| CATATGCAAATTGCAGTTAC+TGG | - | chr8_4:6611924-6611943 | None:intergenic | 35.0% | |
| CAGTAACTGCAATTTGCATA+TGG | + | chr8_4:6611922-6611941 | Msa1310050:CDS | 35.0% | |
| ATGCATTCTCCTTCAGGTAT+TGG | - | chr8_4:6611191-6611210 | None:intergenic | 40.0% | |
| AATCCTCCTACAGAAAGCAA+AGG | + | chr8_4:6611269-6611288 | Msa1310050:five_prime_UTR | 40.0% | |
| TTTCCTTTGCTTTCTGTAGG+AGG | - | chr8_4:6611275-6611294 | None:intergenic | 40.0% | |
| GACTGTGCCAATAGTATGAT+TGG | - | chr8_4:6611401-6611420 | None:intergenic | 40.0% | |
| CTAGTAACTATTGGATGGCT+TGG | + | chr8_4:6611444-6611463 | Msa1310050:exon | 40.0% | |
| ! | GGCTTAGCATCAGATTTTGT+AGG | - | chr8_4:6611476-6611495 | None:intergenic | 40.0% |
| !! | GCCATGTTGGTGTTAAATGT+TGG | + | chr8_4:6611572-6611591 | Msa1310050:CDS | 40.0% |
| GTTCAAGATTCTTCCAGTTG+GGG | - | chr8_4:6611675-6611694 | None:intergenic | 40.0% | |
| CTGTTCAAGATTCTTCCAGT+TGG | - | chr8_4:6611677-6611696 | None:intergenic | 40.0% | |
| CAACTGGAAGAATCTTGAAC+AGG | + | chr8_4:6611675-6611694 | Msa1310050:CDS | 40.0% | |
| AGATCAAAGTGTGCTAGACT+TGG | + | chr8_4:6611794-6611813 | Msa1310050:CDS | 40.0% | |
| AAGTGTGCTAGACTTGGAAA+TGG | + | chr8_4:6611800-6611819 | Msa1310050:CDS | 40.0% | |
| ATGCATTCTCCTTCAGGTAT+TGG | - | chr8_4:6611191-6611210 | None:intergenic | 40.0% | |
| AATCCTCCTACAGAAAGCAA+AGG | + | chr8_4:6611269-6611288 | Msa1310050:five_prime_UTR | 40.0% | |
| TTTCCTTTGCTTTCTGTAGG+AGG | - | chr8_4:6611275-6611294 | None:intergenic | 40.0% | |
| GACTGTGCCAATAGTATGAT+TGG | - | chr8_4:6611401-6611420 | None:intergenic | 40.0% | |
| CTAGTAACTATTGGATGGCT+TGG | + | chr8_4:6611444-6611463 | Msa1310050:exon | 40.0% | |
| ! | GGCTTAGCATCAGATTTTGT+AGG | - | chr8_4:6611476-6611495 | None:intergenic | 40.0% |
| !! | GCCATGTTGGTGTTAAATGT+TGG | + | chr8_4:6611572-6611591 | Msa1310050:CDS | 40.0% |
| GTTCAAGATTCTTCCAGTTG+GGG | - | chr8_4:6611675-6611694 | None:intergenic | 40.0% | |
| CTGTTCAAGATTCTTCCAGT+TGG | - | chr8_4:6611677-6611696 | None:intergenic | 40.0% | |
| CAACTGGAAGAATCTTGAAC+AGG | + | chr8_4:6611675-6611694 | Msa1310050:CDS | 40.0% | |
| AGATCAAAGTGTGCTAGACT+TGG | + | chr8_4:6611794-6611813 | Msa1310050:CDS | 40.0% | |
| AAGTGTGCTAGACTTGGAAA+TGG | + | chr8_4:6611800-6611819 | Msa1310050:CDS | 40.0% | |
| TAGGTGATGCATTCTCCTTC+AGG | - | chr8_4:6611197-6611216 | None:intergenic | 45.0% | |
| GGCTCTCAGAAGAACACAAA+GGG | - | chr8_4:6611555-6611574 | None:intergenic | 45.0% | |
| TGGCTCTCAGAAGAACACAA+AGG | - | chr8_4:6611556-6611575 | None:intergenic | 45.0% | |
| ! | TGTTCTTCTGAGAGCCATGT+TGG | + | chr8_4:6611559-6611578 | Msa1310050:CDS | 45.0% |
| TAGCACACTTTGATCTGTGG+AGG | - | chr8_4:6611790-6611809 | None:intergenic | 45.0% | |
| GTCTAGCACACTTTGATCTG+TGG | - | chr8_4:6611793-6611812 | None:intergenic | 45.0% | |
| TAGGTGATGCATTCTCCTTC+AGG | - | chr8_4:6611197-6611216 | None:intergenic | 45.0% | |
| GGCTCTCAGAAGAACACAAA+GGG | - | chr8_4:6611555-6611574 | None:intergenic | 45.0% | |
| TGGCTCTCAGAAGAACACAA+AGG | - | chr8_4:6611556-6611575 | None:intergenic | 45.0% | |
| ! | TGTTCTTCTGAGAGCCATGT+TGG | + | chr8_4:6611559-6611578 | Msa1310050:CDS | 45.0% |
| TAGCACACTTTGATCTGTGG+AGG | - | chr8_4:6611790-6611809 | None:intergenic | 45.0% | |
| GTCTAGCACACTTTGATCTG+TGG | - | chr8_4:6611793-6611812 | None:intergenic | 45.0% | |
| CACTATTGCGGTGATGTGTC+AGG | + | chr8_4:6611869-6611888 | Msa1310050:CDS | 50.0% | |
| CACTATTGCGGTGATGTGTC+AGG | + | chr8_4:6611869-6611888 | Msa1310050:CDS | 50.0% | |
| CGGTGATGTGTCAGGCAGCA+TGG | + | chr8_4:6611877-6611896 | Msa1310050:CDS | 60.0% | |
| CGGTGATGTGTCAGGCAGCA+TGG | + | chr8_4:6611877-6611896 | Msa1310050:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 6611169 | 6611950 | 6611169 | ID=Msa1310050;Name=Msa1310050 |
| chr8_4 | mRNA | 6611169 | 6611950 | 6611169 | ID=Msa1310050-mRNA-1;Parent=Msa1310050;Name=Msa1310050-mRNA-1;_AED=0.00;_eAED=0.00;_QI=289|1|1|1|1|1|2|0|135 |
| chr8_4 | exon | 6611169 | 6611697 | 6611169 | ID=Msa1310050-mRNA-1:exon:2223;Parent=Msa1310050-mRNA-1 |
| chr8_4 | exon | 6611786 | 6611950 | 6611786 | ID=Msa1310050-mRNA-1:exon:2224;Parent=Msa1310050-mRNA-1 |
| chr8_4 | five_prime_UTR | 6611169 | 6611457 | 6611169 | ID=Msa1310050-mRNA-1:five_prime_utr;Parent=Msa1310050-mRNA-1 |
| chr8_4 | CDS | 6611458 | 6611697 | 6611458 | ID=Msa1310050-mRNA-1:cds;Parent=Msa1310050-mRNA-1 |
| chr8_4 | CDS | 6611786 | 6611950 | 6611786 | ID=Msa1310050-mRNA-1:cds;Parent=Msa1310050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
