Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961300 | GAU45436.1 | 76.596 | 282 | 48 | 4 | 1 | 278 | 145 | 412 | 3.32e-124 | 392 |
| Msa0961300 | GAU45436.1 | 87.432 | 183 | 21 | 2 | 282 | 464 | 578 | 758 | 8.36e-89 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961300 | A0A2Z6NPB4 | 76.596 | 282 | 48 | 4 | 1 | 278 | 145 | 412 | 1.59e-124 | 392 |
| Msa0961300 | A0A2Z6NPB4 | 87.432 | 183 | 21 | 2 | 282 | 464 | 578 | 758 | 3.99e-89 | 300 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008220 | Msa0961300 | 0.802058 | 6.718157e-49 | -8.615850e-47 |
| Msa0027390 | Msa0961300 | 0.825972 | 3.500842e-54 | -8.615850e-47 |
| Msa0031180 | Msa0961300 | 0.814345 | 1.614900e-51 | -8.615850e-47 |
| Msa0032320 | Msa0961300 | 0.805944 | 1.045153e-49 | -8.615850e-47 |
| Msa0037120 | Msa0961300 | 0.803854 | 2.857594e-49 | -8.615850e-47 |
| Msa0039250 | Msa0961300 | 0.800716 | 1.264643e-48 | -8.615850e-47 |
| Msa0054820 | Msa0961300 | 0.821546 | 3.813189e-53 | -8.615850e-47 |
| Msa0056450 | Msa0961300 | 0.822796 | 1.955931e-53 | -8.615850e-47 |
| Msa0077450 | Msa0961300 | 0.838343 | 3.043307e-57 | -8.615850e-47 |
| Msa0078480 | Msa0961300 | 0.800063 | 1.717896e-48 | -8.615850e-47 |
| Msa0084340 | Msa0961300 | 0.804398 | 2.201609e-49 | -8.615850e-47 |
| Msa0092440 | Msa0961300 | 0.815337 | 9.736679e-52 | -8.615850e-47 |
| Msa0100160 | Msa0961300 | 0.811417 | 7.075704e-51 | -8.615850e-47 |
| Msa0101880 | Msa0961300 | 0.801216 | 9.995201e-49 | -8.615850e-47 |
| Msa0621650 | Msa0961300 | 0.812628 | 3.853559e-51 | -8.615850e-47 |
| Msa0622650 | Msa0961300 | 0.811305 | 7.480901e-51 | -8.615850e-47 |
| Msa0626220 | Msa0961300 | 0.801932 | 7.129588e-49 | -8.615850e-47 |
| Msa0641730 | Msa0961300 | 0.802993 | 4.310443e-49 | -8.615850e-47 |
| Msa0651270 | Msa0961300 | 0.806010 | 1.012174e-49 | -8.615850e-47 |
| Msa0657750 | Msa0961300 | 0.813199 | 2.888164e-51 | -8.615850e-47 |
| Msa0661320 | Msa0961300 | 0.813421 | 2.581215e-51 | -8.615850e-47 |
| Msa0663250 | Msa0961300 | 0.813480 | 2.506243e-51 | -8.615850e-47 |
| Msa0677080 | Msa0961300 | 0.828762 | 7.507209e-55 | -8.615850e-47 |
| Msa0682550 | Msa0961300 | 0.813413 | 2.591777e-51 | -8.615850e-47 |
| Msa0687450 | Msa0961300 | 0.810782 | 9.713546e-51 | -8.615850e-47 |
| Msa0688070 | Msa0961300 | 0.803917 | 2.773196e-49 | -8.615850e-47 |
| Msa0689760 | Msa0961300 | 0.830620 | 2.649946e-55 | -8.615850e-47 |
| Msa0691050 | Msa0961300 | 0.821844 | 3.252401e-53 | -8.615850e-47 |
| Msa0693310 | Msa0961300 | 0.812339 | 4.456523e-51 | -8.615850e-47 |
| Msa0693380 | Msa0961300 | 0.809928 | 1.484499e-50 | -8.615850e-47 |
| Msa0716860 | Msa0961300 | 0.813847 | 2.080738e-51 | -8.615850e-47 |
| Msa0737570 | Msa0961300 | 0.807432 | 5.068903e-50 | -8.615850e-47 |
| Msa0744040 | Msa0961300 | 0.810284 | 1.244433e-50 | -8.615850e-47 |
| Msa0756530 | Msa0961300 | 0.820649 | 6.135360e-53 | -8.615850e-47 |
| Msa0757800 | Msa0961300 | 0.818613 | 1.789024e-52 | -8.615850e-47 |
| Msa0780280 | Msa0961300 | 0.822324 | 2.517611e-53 | -8.615850e-47 |
| Msa0800700 | Msa0961300 | 0.821142 | 4.724093e-53 | -8.615850e-47 |
| Msa0821800 | Msa0961300 | 0.823032 | 1.722631e-53 | -8.615850e-47 |
| Msa0824660 | Msa0961300 | 0.801954 | 7.056532e-49 | -8.615850e-47 |
| Msa0828920 | Msa0961300 | 0.818445 | 1.953399e-52 | -8.615850e-47 |
| Msa0829620 | Msa0961300 | 0.820120 | 8.112357e-53 | -8.615850e-47 |
| Msa0122810 | Msa0961300 | 0.801579 | 8.423679e-49 | -8.615850e-47 |
| Msa0123300 | Msa0961300 | 0.810215 | 1.287856e-50 | -8.615850e-47 |
| Msa0126230 | Msa0961300 | 0.804757 | 1.853211e-49 | -8.615850e-47 |
| Msa0133720 | Msa0961300 | 0.818343 | 2.059953e-52 | -8.615850e-47 |
| Msa0133820 | Msa0961300 | 0.815973 | 7.025317e-52 | -8.615850e-47 |
| Msa0135420 | Msa0961300 | 0.808069 | 3.712622e-50 | -8.615850e-47 |
| Msa0143560 | Msa0961300 | 0.808756 | 2.648233e-50 | -8.615850e-47 |
| Msa0143850 | Msa0961300 | 0.806789 | 6.935238e-50 | -8.615850e-47 |
| Msa0144790 | Msa0961300 | 0.842800 | 2.072511e-58 | -8.615850e-47 |
| Msa0165300 | Msa0961300 | 0.837103 | 6.331321e-57 | -8.615850e-47 |
| Msa0170140 | Msa0961300 | 0.831319 | 1.785496e-55 | -8.615850e-47 |
| Msa0191250 | Msa0961300 | 0.819045 | 1.427012e-52 | -8.615850e-47 |
| Msa0200560 | Msa0961300 | 0.844229 | 8.602611e-59 | -8.615850e-47 |
| Msa0227230 | Msa0961300 | 0.809465 | 1.866798e-50 | -8.615850e-47 |
| Msa0377440 | Msa0961300 | 0.808141 | 3.582898e-50 | -8.615850e-47 |
| Msa0388960 | Msa0961300 | 0.804902 | 1.728185e-49 | -8.615850e-47 |
| Msa0390960 | Msa0961300 | 0.805023 | 1.630971e-49 | -8.615850e-47 |
| Msa0417650 | Msa0961300 | 0.832465 | 9.307797e-56 | -8.615850e-47 |
| Msa0417730 | Msa0961300 | 0.820676 | 6.046661e-53 | -8.615850e-47 |
| Msa0423840 | Msa0961300 | 0.813245 | 2.821489e-51 | -8.615850e-47 |
| Msa0436370 | Msa0961300 | 0.822919 | 1.830641e-53 | -8.615850e-47 |
| Msa0468800 | Msa0961300 | 0.811121 | 8.204317e-51 | -8.615850e-47 |
| Msa0243250 | Msa0961300 | 0.828063 | 1.106939e-54 | -8.615850e-47 |
| Msa0245940 | Msa0961300 | 0.803522 | 3.348390e-49 | -8.615850e-47 |
| Msa0264780 | Msa0961300 | 0.800280 | 1.551802e-48 | -8.615850e-47 |
| Msa0269520 | Msa0961300 | 0.816239 | 6.125849e-52 | -8.615850e-47 |
| Msa0272730 | Msa0961300 | 0.809104 | 2.231504e-50 | -8.615850e-47 |
| Msa0276920 | Msa0961300 | 0.827729 | 1.332161e-54 | -8.615850e-47 |
| Msa0281640 | Msa0961300 | 0.824470 | 7.933559e-54 | -8.615850e-47 |
| Msa0287310 | Msa0961300 | 0.814406 | 1.566222e-51 | -8.615850e-47 |
| Msa0313270 | Msa0961300 | 0.814221 | 1.720659e-51 | -8.615850e-47 |
| Msa0317730 | Msa0961300 | 0.801417 | 9.093087e-49 | -8.615850e-47 |
| Msa0318720 | Msa0961300 | 0.813931 | 1.994094e-51 | -8.615850e-47 |
| Msa0320800 | Msa0961300 | 0.843895 | 1.057469e-58 | -8.615850e-47 |
| Msa0325850 | Msa0961300 | 0.814822 | 1.266638e-51 | -8.615850e-47 |
| Msa0342010 | Msa0961300 | 0.806769 | 7.003920e-50 | -8.615850e-47 |
| Msa0347990 | Msa0961300 | 0.801952 | 7.062802e-49 | -8.615850e-47 |
| Msa0484780 | Msa0961300 | 0.826396 | 2.775343e-54 | -8.615850e-47 |
| Msa0512870 | Msa0961300 | 0.825330 | 4.972947e-54 | -8.615850e-47 |
| Msa0517650 | Msa0961300 | 0.804262 | 2.350112e-49 | -8.615850e-47 |
| Msa0572420 | Msa0961300 | 0.827310 | 1.679019e-54 | -8.615850e-47 |
| Msa0572480 | Msa0961300 | 0.808312 | 3.294700e-50 | -8.615850e-47 |
| Msa0573040 | Msa0961300 | 0.823854 | 1.106907e-53 | -8.615850e-47 |
| Msa0576680 | Msa0961300 | 0.814124 | 1.807492e-51 | -8.615850e-47 |
| Msa0861830 | Msa0961300 | 0.824000 | 1.023224e-53 | -8.615850e-47 |
| Msa0867890 | Msa0961300 | 0.807864 | 4.103120e-50 | -8.615850e-47 |
| Msa0868160 | Msa0961300 | 0.813169 | 2.932851e-51 | -8.615850e-47 |
| Msa0892570 | Msa0961300 | 0.808493 | 3.014786e-50 | -8.615850e-47 |
| Msa0893810 | Msa0961300 | 0.808104 | 3.649227e-50 | -8.615850e-47 |
| Msa0896010 | Msa0961300 | 0.817362 | 3.429709e-52 | -8.615850e-47 |
| Msa0900620 | Msa0961300 | 0.845893 | 3.057160e-59 | -8.615850e-47 |
| Msa0906690 | Msa0961300 | 0.811974 | 5.351418e-51 | -8.615850e-47 |
| Msa0908050 | Msa0961300 | 0.807207 | 5.657341e-50 | -8.615850e-47 |
| Msa0925280 | Msa0961300 | 0.814942 | 1.191432e-51 | -8.615850e-47 |
| Msa0926470 | Msa0961300 | 0.818370 | 2.031015e-52 | -8.615850e-47 |
| Msa0932350 | Msa0961300 | 0.810232 | 1.276573e-50 | -8.615850e-47 |
| Msa0939000 | Msa0961300 | 0.818365 | 2.035714e-52 | -8.615850e-47 |
| Msa0959010 | Msa0961300 | 0.812488 | 4.133420e-51 | -8.615850e-47 |
| Msa0961300 | Msa0966080 | 0.817630 | 2.984885e-52 | -8.615850e-47 |
| Msa0961300 | Msa0975940 | 0.834014 | 3.829116e-56 | -8.615850e-47 |
| Msa0961300 | Msa0981310 | 0.806284 | 8.864164e-50 | -8.615850e-47 |
| Msa0961300 | Msa0996020 | 0.800003 | 1.766926e-48 | -8.615850e-47 |
| Msa0961300 | Msa1010070 | 0.823399 | 1.414679e-53 | -8.615850e-47 |
| Msa0961300 | Msa1021510 | 0.836561 | 8.707754e-57 | -8.615850e-47 |
| Msa0961300 | Msa1036410 | 0.804054 | 2.596721e-49 | -8.615850e-47 |
| Msa0961300 | Msa1038080 | 0.803736 | 3.023994e-49 | -8.615850e-47 |
| Msa0961300 | Msa1051600 | 0.807189 | 5.709073e-50 | -8.615850e-47 |
| Msa0961300 | Msa1056460 | 0.820153 | 7.972533e-53 | -8.615850e-47 |
| Msa0961300 | Msa1082500 | 0.806663 | 7.374790e-50 | -8.615850e-47 |
| Msa0961300 | Msa1087980 | 0.821074 | 4.899307e-53 | -8.615850e-47 |
| Msa0961300 | Msa1105500 | 0.829247 | 5.726146e-55 | -8.615850e-47 |
| Msa0961300 | Msa1113590 | 0.806229 | 9.103261e-50 | -8.615850e-47 |
| Msa0961300 | Msa1133570 | 0.803948 | 2.732339e-49 | -8.615850e-47 |
| Msa0961300 | Msa1158660 | 0.819530 | 1.106904e-52 | -8.615850e-47 |
| Msa0961300 | Msa1205370 | 0.812171 | 4.848030e-51 | -8.615850e-47 |
| Msa0961300 | Msa1211340 | 0.802055 | 6.728230e-49 | -8.615850e-47 |
| Msa0961300 | Msa1224830 | 0.814283 | 1.667219e-51 | -8.615850e-47 |
| Msa0961300 | Msa1227330 | 0.829723 | 4.387182e-55 | -8.615850e-47 |
| Msa0961300 | Msa1267610 | 0.811914 | 5.517042e-51 | -8.615850e-47 |
| Msa0961300 | Msa1286550 | 0.820189 | 7.822264e-53 | -8.615850e-47 |
| Msa0961300 | Msa1288450 | 0.810793 | 9.658571e-51 | -8.615850e-47 |
| Msa0961300 | Msa1297290 | 0.817291 | 3.558062e-52 | -8.615850e-47 |
| Msa0961300 | Msa1299330 | 0.825886 | 3.669598e-54 | -8.615850e-47 |
| Msa0961300 | Msa1313150 | 0.805263 | 1.452731e-49 | -8.615850e-47 |
| Msa0961300 | Msa1317580 | 0.820316 | 7.314364e-53 | -8.615850e-47 |
| Msa0961300 | Msa1329670 | 0.804030 | 2.626330e-49 | -8.615850e-47 |
| Msa0961300 | Msa1333680 | 0.803568 | 3.276314e-49 | -8.615850e-47 |
| Msa0961300 | Msa1333730 | 0.811362 | 7.270913e-51 | -8.615850e-47 |
| Msa0961300 | Msa1338250 | 0.812130 | 4.950018e-51 | -8.615850e-47 |
| Msa0961300 | Msa1340810 | 0.800368 | 1.489545e-48 | -8.615850e-47 |
| Msa0961300 | Msa1348880 | 0.801734 | 7.830541e-49 | -8.615850e-47 |
| Msa0961300 | Msa1366300 | 0.817270 | 3.597954e-52 | -8.615850e-47 |
| Msa0961300 | Msa1379850 | 0.824917 | 6.223185e-54 | -8.615850e-47 |
| Msa0961300 | Msa1385000 | 0.817500 | 3.192880e-52 | -8.615850e-47 |
| Msa0961300 | Msa1392700 | 0.807568 | 4.743715e-50 | -8.615850e-47 |
| Msa0961300 | Msa1396780 | 0.808829 | 2.555011e-50 | -8.615850e-47 |
| Msa0961300 | Msa1400070 | 0.802936 | 4.428842e-49 | -8.615850e-47 |
| Msa0961300 | Msa1402270 | 0.821402 | 4.114665e-53 | -8.615850e-47 |
| Msa0961300 | Msa1415940 | 0.812190 | 4.803387e-51 | -8.615850e-47 |
| Msa0961300 | Msa1420250 | 0.833231 | 6.006607e-56 | -8.615850e-47 |
| Msa0961300 | Msa1423880 | 0.803826 | 2.896791e-49 | -8.615850e-47 |
| Msa0961300 | Msa1433220 | 0.835068 | 2.081124e-56 | -8.615850e-47 |
| Msa0961300 | Msa1435400 | 0.837615 | 4.683061e-57 | -8.615850e-47 |
| Msa0961300 | Msa1440940 | 0.822696 | 2.062931e-53 | -8.615850e-47 |
| Msa0961300 | Msa1445220 | 0.807679 | 4.492792e-50 | -8.615850e-47 |
| Msa0961300 | Msa1446780 | 0.805033 | 1.622541e-49 | -8.615850e-47 |
| Msa0961300 | Msa1464290 | 0.802774 | 4.783644e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961300 | MtrunA17_Chr6g0480541 | 91.250 | 240 | 12 | 2 | 40 | 278 | 288 | 519 | 8.81e-126 | 396 |
| Msa0961300 | MtrunA17_Chr6g0480541 | 91.803 | 183 | 15 | 0 | 282 | 464 | 685 | 867 | 1.29e-99 | 326 |
| Msa0961300 | MtrunA17_Chr6g0480541 | 94.595 | 74 | 4 | 0 | 453 | 526 | 1125 | 1198 | 4.56e-40 | 155 |
| Msa0961300 | MtrunA17_Chr6g0480491 | 86.486 | 185 | 22 | 1 | 289 | 470 | 1 | 185 | 1.64e-101 | 303 |
| Msa0961300 | MtrunA17_Chr6g0480291 | 90.541 | 74 | 6 | 1 | 453 | 526 | 1 | 73 | 5.39e-39 | 137 |
| Msa0961300 | MtrunA17_Chr5g0437131 | 58.108 | 74 | 31 | 0 | 453 | 526 | 630 | 703 | 1.28e-21 | 99.0 |
| Msa0961300 | MtrunA17_Chr6g0480331 | 90.244 | 41 | 4 | 0 | 475 | 515 | 2 | 42 | 1.31e-19 | 82.4 |
| Msa0961300 | MtrunA17_Chr6g0480191 | 90.323 | 31 | 3 | 0 | 496 | 526 | 1 | 31 | 1.10e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961300 | AT1G73460.2 | 61.088 | 239 | 87 | 3 | 56 | 293 | 256 | 489 | 4.96e-77 | 263 |
| Msa0961300 | AT1G73460.2 | 86.486 | 74 | 10 | 0 | 453 | 526 | 1085 | 1158 | 5.54e-37 | 146 |
| Msa0961300 | AT1G73460.1 | 61.088 | 239 | 87 | 3 | 56 | 293 | 256 | 489 | 4.96e-77 | 263 |
| Msa0961300 | AT1G73460.1 | 86.486 | 74 | 10 | 0 | 453 | 526 | 1085 | 1158 | 5.54e-37 | 146 |
| Msa0961300 | AT1G73450.1 | 59.414 | 239 | 87 | 4 | 56 | 293 | 255 | 484 | 7.33e-76 | 260 |
| Msa0961300 | AT1G73450.1 | 86.486 | 74 | 10 | 0 | 453 | 526 | 1068 | 1141 | 5.39e-37 | 146 |
| Msa0961300 | AT1G73450.1 | 38.000 | 150 | 85 | 3 | 318 | 464 | 666 | 810 | 1.06e-12 | 71.6 |
| Msa0961300 | AT3G17750.1 | 49.265 | 272 | 120 | 5 | 21 | 286 | 232 | 491 | 2.27e-57 | 207 |
| Msa0961300 | AT3G17750.1 | 82.895 | 76 | 13 | 0 | 451 | 526 | 1052 | 1127 | 9.42e-35 | 140 |
| Msa0961300 | AT4G03175.1 | 52.703 | 74 | 35 | 0 | 453 | 526 | 17 | 90 | 1.48e-21 | 89.7 |
| Msa0961300 | AT2G40120.1 | 51.351 | 74 | 36 | 0 | 453 | 526 | 488 | 561 | 7.61e-18 | 87.0 |
Find 112 sgRNAs with CRISPR-Local
Find 367 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCCTTGCATCACCTATTTC+TGG | 0.131448 | 6_3:-82527874 | None:intergenic |
| GCTGACAGCTCTTTACTTAT+TGG | 0.146422 | 6_3:+82528126 | Msa0961300:CDS |
| TTGATTATCCAAATGAATAT+TGG | 0.229575 | 6_3:+82529424 | Msa0961300:CDS |
| TTTACTTATTGGATCATATC+TGG | 0.234260 | 6_3:+82528137 | Msa0961300:CDS |
| ATTTAACCATGGCGACTTAC+TGG | 0.244009 | 6_3:-82530198 | None:intergenic |
| CACGCAGAAGGTCGCTTCTT+CGG | 0.257404 | 6_3:-82532482 | None:intergenic |
| TAAAGATAGCCAGATGATTC+AGG | 0.272060 | 6_3:+82530166 | Msa0961300:CDS |
| TGCCTCAAAGATGTCTTCTT+TGG | 0.277464 | 6_3:-82532398 | None:intergenic |
| ATTACAAGGGAAGATGATTT+AGG | 0.302027 | 6_3:+82530452 | Msa0961300:CDS |
| CTTCACCCGAGAAAAGTTCT+AGG | 0.316441 | 6_3:+82530312 | Msa0961300:CDS |
| GATACCTCTGATCTTGTATC+AGG | 0.317158 | 6_3:+82529366 | Msa0961300:CDS |
| GAAAAGAGAAAGCCAGAAAT+AGG | 0.317771 | 6_3:+82527862 | Msa0961300:CDS |
| TTCGTAAGGGTATGATAATC+AGG | 0.328696 | 6_3:-82532522 | None:intergenic |
| TGATTATCCAAATGAATATT+GGG | 0.333788 | 6_3:+82529425 | Msa0961300:CDS |
| CCATCGGATTCAAACACTTC+TGG | 0.347894 | 6_3:-82528081 | None:intergenic |
| AAGATGTCTTCTTTGGAATC+AGG | 0.354438 | 6_3:-82532391 | None:intergenic |
| CCAACTACTGTCGATAATTA+CGG | 0.356947 | 6_3:+82530377 | Msa0961300:CDS |
| GGACCTCTTTCCTGTGGATC+TGG | 0.357227 | 6_3:-82529579 | None:intergenic |
| TCAGAGTCCCAATATTCATT+TGG | 0.374608 | 6_3:-82529432 | None:intergenic |
| TCATATCTGGATGTACCTAT+TGG | 0.385509 | 6_3:+82528150 | Msa0961300:CDS |
| CGACTTCGGAAAGAATTCTA+TGG | 0.388974 | 6_3:+82530013 | Msa0961300:CDS |
| CGATGGATTGGCTGCTAAGC+TGG | 0.396555 | 6_3:+82528098 | Msa0961300:CDS |
| ACGCAGAAGGTCGCTTCTTC+GGG | 0.406192 | 6_3:-82532481 | None:intergenic |
| ATGACGACGACGACGATGTT+GGG | 0.411245 | 6_3:+82529460 | Msa0961300:CDS |
| TGAGGCATAGATTACCAATT+GGG | 0.431861 | 6_3:+82532414 | Msa0961300:CDS |
| CAACTACTGTCGATAATTAC+GGG | 0.437581 | 6_3:+82530378 | Msa0961300:CDS |
| TTGAGGCATAGATTACCAAT+TGG | 0.446590 | 6_3:+82532413 | Msa0961300:CDS |
| CAGGAACATTTGTTAGCAAA+AGG | 0.450710 | 6_3:+82531873 | Msa0961300:intron |
| TAAAAGAGCAGGTGGATGAA+GGG | 0.453983 | 6_3:+82527902 | Msa0961300:CDS |
| ATAAAAGAGCAGGTGGATGA+AGG | 0.459939 | 6_3:+82527901 | Msa0961300:CDS |
| TTGATATGCAGGAAAGCAAC+AGG | 0.462723 | 6_3:+82532360 | Msa0961300:intron |
| TACCCTAGTGACAATGAAAA+GGG | 0.464653 | 6_3:+82529537 | Msa0961300:CDS |
| TGGCTATCTTTAAGAGATTG+AGG | 0.465563 | 6_3:-82530155 | None:intergenic |
| GTTCTGAACAGAATAACATT+GGG | 0.465881 | 6_3:+82527959 | Msa0961300:CDS |
| TTAGGTATGAGGAAGGCTAC+AGG | 0.471617 | 6_3:+82529306 | Msa0961300:intron |
| AAAGAGCAGGTGGATGAAGG+GGG | 0.476070 | 6_3:+82527904 | Msa0961300:CDS |
| TATGACGACGACGACGATGT+TGG | 0.483600 | 6_3:+82529459 | Msa0961300:CDS |
| ATTACGTTTACCTCTTGCAT+TGG | 0.489811 | 6_3:+82527984 | Msa0961300:CDS |
| CCCTTGTGGCTTGGAAGTAG+TGG | 0.490759 | 6_3:+82527586 | Msa0961300:CDS |
| TCAGCAATCAAAAGAGAACT+TGG | 0.493597 | 6_3:+82527499 | Msa0961300:CDS |
| AACCAGGCCTCATCCTCAAT+AGG | 0.494298 | 6_3:-82529495 | None:intergenic |
| TATGCTTTATGAGAGGAATC+AGG | 0.494533 | 6_3:+82531929 | Msa0961300:CDS |
| AACCACCACCCTGAATCATC+TGG | 0.494607 | 6_3:-82530175 | None:intergenic |
| TTACCCTAGTGACAATGAAA+AGG | 0.495621 | 6_3:+82529536 | Msa0961300:CDS |
| ATGAAGCCTTGGTCCCCAAT+TGG | 0.495900 | 6_3:-82532428 | None:intergenic |
| TTCCAAAGAAGACATCTTTG+AGG | 0.496816 | 6_3:+82532396 | Msa0961300:CDS |
| GATTGCTGTTGTACAAGAGC+AGG | 0.497793 | 6_3:+82530496 | Msa0961300:CDS |
| ATGAAGAAGTTGACATTACA+AGG | 0.499940 | 6_3:+82530438 | Msa0961300:CDS |
| AAAAGAGCAGGTGGATGAAG+GGG | 0.504756 | 6_3:+82527903 | Msa0961300:CDS |
| AGAAGATAAGCCGTTGACAT+TGG | 0.505280 | 6_3:+82528056 | Msa0961300:CDS |
| AATGAAAAGGGGACTGGGCA+TGG | 0.507288 | 6_3:+82529549 | Msa0961300:CDS |
| CCAGAAGTGTTTGAATCCGA+TGG | 0.508678 | 6_3:+82528081 | Msa0961300:CDS |
| CAACGAAGTCAATGAAGCCT+TGG | 0.513679 | 6_3:-82532439 | None:intergenic |
| AGAGCATGTCAAGCTAGAAA+AGG | 0.514729 | 6_3:+82530412 | Msa0961300:CDS |
| CGGATGAAATGCTTTCTTCG+TGG | 0.517481 | 6_3:+82530270 | Msa0961300:CDS |
| AAAGATAGCCAGATGATTCA+GGG | 0.519030 | 6_3:+82530167 | Msa0961300:CDS |
| AAAAGCATTCATACAGTCAT+CGG | 0.521280 | 6_3:-82530240 | None:intergenic |
| TTGGCAGGACCTCTTTCCTG+TGG | 0.526403 | 6_3:-82529585 | None:intergenic |
| AGTGACAATGAAAAGGGGAC+TGG | 0.537996 | 6_3:+82529543 | Msa0961300:CDS |
| CCGTAATTATCGACAGTAGT+TGG | 0.543307 | 6_3:-82530377 | None:intergenic |
| AACATTTGTTAGCAAAAGGA+CGG | 0.544078 | 6_3:+82531877 | Msa0961300:CDS |
| GTGACAATGAAAAGGGGACT+GGG | 0.546908 | 6_3:+82529544 | Msa0961300:CDS |
| AAGAGCAGGTGGATGAAGGG+GGG | 0.549508 | 6_3:+82527905 | Msa0961300:CDS |
| AGCAGAAGGAAGAGTATCCA+AGG | 0.551230 | 6_3:+82528010 | Msa0961300:CDS |
| TCGAATAAATATGTCATTGG+AGG | 0.552330 | 6_3:+82530077 | Msa0961300:CDS |
| TTCACCCGAGAAAAGTTCTA+GGG | 0.553463 | 6_3:+82530313 | Msa0961300:CDS |
| GAGTCGAATAAATATGTCAT+TGG | 0.556213 | 6_3:+82530074 | Msa0961300:CDS |
| AGCCAGATGATTCAGGGTGG+TGG | 0.560576 | 6_3:+82530173 | Msa0961300:CDS |
| AGTTCTGAACAGAATAACAT+TGG | 0.560804 | 6_3:+82527958 | Msa0961300:CDS |
| TGATTTAGGTGTTTCACAAG+AGG | 0.562368 | 6_3:+82530466 | Msa0961300:CDS |
| AGCCAGAAATAGGTGATGCA+AGG | 0.562922 | 6_3:+82527872 | Msa0961300:CDS |
| GAGACAACCTATTGAGGATG+AGG | 0.563826 | 6_3:+82529488 | Msa0961300:CDS |
| TGGAAGCGTTCCAGATCCAC+AGG | 0.564395 | 6_3:+82529569 | Msa0961300:CDS |
| AGTGTTTGAATCCGATGGAT+TGG | 0.565160 | 6_3:+82528086 | Msa0961300:CDS |
| TTCTGCTTCTCCAATGCAAG+AGG | 0.565960 | 6_3:-82527994 | None:intergenic |
| AGATTACCAATTGGGGACCA+AGG | 0.566061 | 6_3:+82532422 | Msa0961300:CDS |
| ACCACTACTTCCAAGCCACA+AGG | 0.566949 | 6_3:-82527587 | None:intergenic |
| ACATTTGTTAGCAAAAGGAC+GGG | 0.570151 | 6_3:+82531878 | Msa0961300:CDS |
| AACCTATTGAGGATGAGGCC+TGG | 0.570582 | 6_3:+82529493 | Msa0961300:CDS |
| ACATTACAATTATTTAACCA+TGG | 0.570639 | 6_3:-82530209 | None:intergenic |
| TAGGTATGAGGAAGGCTACA+GGG | 0.571899 | 6_3:+82529307 | Msa0961300:intron |
| CTTCGTTGCTCATTTGCTCG+AGG | 0.578087 | 6_3:+82532454 | Msa0961300:CDS |
| CAGCTTAGCAGCCAATCCAT+CGG | 0.580901 | 6_3:-82528097 | None:intergenic |
| TCGTAAGGGTATGATAATCA+GGG | 0.582233 | 6_3:-82532521 | None:intergenic |
| GGCTTATATAAAAGAGCAGG+TGG | 0.587248 | 6_3:+82527894 | Msa0961300:CDS |
| GTTCCAGATCCACAGGAAAG+AGG | 0.601044 | 6_3:+82529576 | Msa0961300:CDS |
| GCCAGAAATAGGTGATGCAA+GGG | 0.602030 | 6_3:+82527873 | Msa0961300:CDS |
| TTTAGAGCTTCACACGCAGA+AGG | 0.606685 | 6_3:-82532494 | None:intergenic |
| CAAGGCTAGTAATACTTCGA+AGG | 0.608716 | 6_3:+82527466 | Msa0961300:CDS |
| AAGGGCTTATATAAAAGAGC+AGG | 0.609052 | 6_3:+82527891 | Msa0961300:CDS |
| AGGTATGAGGAAGGCTACAG+GGG | 0.617750 | 6_3:+82529308 | Msa0961300:intron |
| GTGGTTCCAGTAAGTCGCCA+TGG | 0.618707 | 6_3:+82530192 | Msa0961300:CDS |
| AGTTGGCTGTCTGTTAGTCA+AGG | 0.620743 | 6_3:+82529333 | Msa0961300:CDS |
| AAAATCATATGCTTTATGAG+AGG | 0.623112 | 6_3:+82531922 | Msa0961300:CDS |
| ATAGTGGAAGATCACGACTT+CGG | 0.627894 | 6_3:+82529999 | Msa0961300:intron |
| TCTTGCATTGGAGAAGCAGA+AGG | 0.630355 | 6_3:+82527996 | Msa0961300:CDS |
| GTACATGAGACAACCTATTG+AGG | 0.638206 | 6_3:+82529482 | Msa0961300:CDS |
| ACTTCTGGCTCCAATGTCAA+CGG | 0.640707 | 6_3:-82528066 | None:intergenic |
| ATGAAATGCTTTCTTCGTGG+AGG | 0.645655 | 6_3:+82530273 | Msa0961300:CDS |
| GAGGCATAGATTACCAATTG+GGG | 0.647630 | 6_3:+82532415 | Msa0961300:CDS |
| ATGGTTAAATAATTGTAATG+TGG | 0.647837 | 6_3:+82530211 | Msa0961300:CDS |
| TTCTGAACAGAATAACATTG+GGG | 0.648213 | 6_3:+82527960 | Msa0961300:CDS |
| GGATGAGAATAATGCTCATG+CGG | 0.652471 | 6_3:+82530334 | Msa0961300:CDS |
| AAAACCTGATACAAGATCAG+AGG | 0.652743 | 6_3:-82529370 | None:intergenic |
| CCACTACTTCCAAGCCACAA+GGG | 0.665308 | 6_3:-82527586 | None:intergenic |
| ACCCTAGTGACAATGAAAAG+GGG | 0.671236 | 6_3:+82529538 | Msa0961300:CDS |
| TGTTAGTCAAGGAATATCAG+AGG | 0.674279 | 6_3:+82529344 | Msa0961300:CDS |
| CGTAAGGGTATGATAATCAG+GGG | 0.676338 | 6_3:-82532520 | None:intergenic |
| TGAAGAAGTTGACATTACAA+GGG | 0.707878 | 6_3:+82530439 | Msa0961300:CDS |
| TCTGAACAGAATAACATTGG+GGG | 0.709856 | 6_3:+82527961 | Msa0961300:CDS |
| GGTATGAGGAAGGCTACAGG+GGG | 0.710161 | 6_3:+82529309 | Msa0961300:intron |
| GATAGCCAGATGATTCAGGG+TGG | 0.778676 | 6_3:+82530170 | Msa0961300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATCGTAATGTTTTTTA+TGG | + | chr6_3:82528381-82528400 | Msa0961300:intron | 15.0% |
| !! | GATAAATTTACAAAGTAAAT+AGG | - | chr6_3:82529024-82529043 | None:intergenic | 15.0% |
| !!! | ATAATTTGTTAGATATACAT+CGG | + | chr6_3:82529733-82529752 | Msa0961300:intron | 15.0% |
| !! | AAGTTAAACAGATAAATATT+CGG | - | chr6_3:82531165-82531184 | None:intergenic | 15.0% |
| !!! | AGTCAATTTTAGAAATTTTA+GGG | - | chr6_3:82531993-82532012 | None:intergenic | 15.0% |
| !!! | TAGTCAATTTTAGAAATTTT+AGG | - | chr6_3:82531994-82532013 | None:intergenic | 15.0% |
| !!! | TTTTTTATTTCTTGTCCAAT+AGG | - | chr6_3:82528168-82528187 | None:intergenic | 20.0% |
| !! | CAATAAATAATGTGACATTA+AGG | - | chr6_3:82529103-82529122 | None:intergenic | 20.0% |
| !! | CAGAAAAAACAATAATCTTT+GGG | - | chr6_3:82529234-82529253 | None:intergenic | 20.0% |
| !! | TCAGAAAAAACAATAATCTT+TGG | - | chr6_3:82529235-82529254 | None:intergenic | 20.0% |
| !!! | GATCTATTTGTATATGTTTT+AGG | + | chr6_3:82529288-82529307 | Msa0961300:intron | 20.0% |
| !! | TTGATTATCCAAATGAATAT+TGG | + | chr6_3:82529424-82529443 | Msa0961300:CDS | 20.0% |
| !! | TGATTATCCAAATGAATATT+GGG | + | chr6_3:82529425-82529444 | Msa0961300:CDS | 20.0% |
| !!! | ATACATATTCTAGTTTACTT+GGG | - | chr6_3:82529825-82529844 | None:intergenic | 20.0% |
| !! | ACATTACAATTATTTAACCA+TGG | - | chr6_3:82530212-82530231 | None:intergenic | 20.0% |
| !! | ATGGTTAAATAATTGTAATG+TGG | + | chr6_3:82530211-82530230 | Msa0961300:CDS | 20.0% |
| !! | TCAAGTTAAAATTACAATCT+AGG | - | chr6_3:82530707-82530726 | None:intergenic | 20.0% |
| !! | AAAATAAGATGAAACTAAGA+TGG | + | chr6_3:82530834-82530853 | Msa0961300:intron | 20.0% |
| !! | CATTGTATGTTTAATTATCA+TGG | + | chr6_3:82532310-82532329 | Msa0961300:intron | 20.0% |
| !!! | ACGGTTTTTTCATTTTTGTT+GGG | - | chr6_3:82527535-82527554 | None:intergenic | 25.0% |
| ! | AACAAAAATGAAAAAACCGT+GGG | + | chr6_3:82527535-82527554 | Msa0961300:CDS | 25.0% |
| ! | TTTACTTATTGGATCATATC+TGG | + | chr6_3:82528137-82528156 | Msa0961300:CDS | 25.0% |
| ! | ATGTCAAAATTCAATCCAAT+TGG | - | chr6_3:82528838-82528857 | None:intergenic | 25.0% |
| ! | AAAACAAACTGACAAGAAAT+AGG | - | chr6_3:82528923-82528942 | None:intergenic | 25.0% |
| !!! | AGTTTGTTTTTAGTGTAGAA+TGG | + | chr6_3:82528933-82528952 | Msa0961300:intron | 25.0% |
| !! | GAAAACCTTAATCATTTTCA+TGG | - | chr6_3:82529179-82529198 | None:intergenic | 25.0% |
| !!! | TTGTATATGTTTTAGGTATG+AGG | + | chr6_3:82529295-82529314 | Msa0961300:intron | 25.0% |
| !!! | CATACATATTCTAGTTTACT+TGG | - | chr6_3:82529826-82529845 | None:intergenic | 25.0% |
| ! | CAAGTAAACTAGAATATGTA+TGG | + | chr6_3:82529824-82529843 | Msa0961300:intron | 25.0% |
| ! | TAAACTAGAATATGTATGGA+AGG | + | chr6_3:82529828-82529847 | Msa0961300:intron | 25.0% |
| ! | AAACTAGAATATGTATGGAA+GGG | + | chr6_3:82529829-82529848 | Msa0961300:intron | 25.0% |
| ! | CAAATAAAAACACATACTGA+AGG | + | chr6_3:82530119-82530138 | Msa0961300:CDS | 25.0% |
| ! | ACTTTGCAAATCAATGAAAA+TGG | - | chr6_3:82530620-82530639 | None:intergenic | 25.0% |
| ! | GCGATGCATTAATTATTAAT+TGG | + | chr6_3:82530782-82530801 | Msa0961300:intron | 25.0% |
| !! | GAATGTTTTATGGATCAAAA+AGG | - | chr6_3:82530877-82530896 | None:intergenic | 25.0% |
| !!! | ATCTGTATTTTAACAAAGCA+AGG | - | chr6_3:82530899-82530918 | None:intergenic | 25.0% |
| ! | ATCGAAAACATTGTTGAAAT+TGG | + | chr6_3:82531107-82531126 | Msa0961300:intron | 25.0% |
| ! | TCGAAAACATTGTTGAAATT+GGG | + | chr6_3:82531108-82531127 | Msa0961300:intron | 25.0% |
| !! | TTTTTACCATTGGATCAATA+AGG | - | chr6_3:82531550-82531569 | None:intergenic | 25.0% |
| !!! | TTCTGAAATATGACAAATTC+TGG | - | chr6_3:82531735-82531754 | None:intergenic | 25.0% |
| ! | AAGAACTGAATTACATTATG+AGG | + | chr6_3:82531754-82531773 | Msa0961300:intron | 25.0% |
| ! | AAGTAATTTCCATAAACTCT+AGG | - | chr6_3:82532179-82532198 | None:intergenic | 25.0% |
| ! | ATGTTTAATATGAGCATGTT+TGG | - | chr6_3:82532289-82532308 | None:intergenic | 25.0% |
| !! | TTTTGATTGCTGAGATATTG+AGG | - | chr6_3:82527492-82527511 | None:intergenic | 30.0% |
| !!! | CACGGTTTTTTCATTTTTGT+TGG | - | chr6_3:82527536-82527555 | None:intergenic | 30.0% |
| CAACAAAAATGAAAAAACCG+TGG | + | chr6_3:82527534-82527553 | Msa0961300:CDS | 30.0% | |
| ACAAAAATGAAAAAACCGTG+GGG | + | chr6_3:82527536-82527555 | Msa0961300:CDS | 30.0% | |
| ! | TTTTGCACAAGGTTAAACTT+CGG | - | chr6_3:82527628-82527647 | None:intergenic | 30.0% |
| !!! | TAGATTCTTTGTTTTGCACA+AGG | - | chr6_3:82527639-82527658 | None:intergenic | 30.0% |
| TTGTGCAAAACAAAGAATCT+AGG | + | chr6_3:82527638-82527657 | Msa0961300:intron | 30.0% | |
| TGTGCAAAACAAAGAATCTA+GGG | + | chr6_3:82527639-82527658 | Msa0961300:intron | 30.0% | |
| AAGAATCTAGGGAAATTGAT+CGG | + | chr6_3:82527650-82527669 | Msa0961300:intron | 30.0% | |
| CAAATTCATCTTCTGATGTT+TGG | + | chr6_3:82527749-82527768 | Msa0961300:intron | 30.0% | |
| !!! | ACTGTTTTCCCTTTTTCAAA+GGG | + | chr6_3:82527790-82527809 | Msa0961300:intron | 30.0% |
| !! | AGTTCTGAACAGAATAACAT+TGG | + | chr6_3:82527958-82527977 | Msa0961300:CDS | 30.0% |
| ! | GTTCTGAACAGAATAACATT+GGG | + | chr6_3:82527959-82527978 | Msa0961300:CDS | 30.0% |
| TTCTGAACAGAATAACATTG+GGG | + | chr6_3:82527960-82527979 | Msa0961300:CDS | 30.0% | |
| ! | TCTTCTGACTTAATTTTCAC+AGG | - | chr6_3:82528042-82528061 | None:intergenic | 30.0% |
| GGACAAGAAATAAAAAATGC+AGG | + | chr6_3:82528171-82528190 | Msa0961300:CDS | 30.0% | |
| ! | CAAGAACATTTGAAAGCATA+TGG | - | chr6_3:82528233-82528252 | None:intergenic | 30.0% |
| ! | CTAATTACTGTCTGATTTGT+TGG | + | chr6_3:82528276-82528295 | Msa0961300:intron | 30.0% |
| GGCTTATTATCTTGATTTAG+TGG | + | chr6_3:82528348-82528367 | Msa0961300:intron | 30.0% | |
| CAACAAAATGAAAGAGATTC+AGG | - | chr6_3:82528899-82528918 | None:intergenic | 30.0% | |
| ! | CTGAATCTCTTTCATTTTGT+TGG | + | chr6_3:82528897-82528916 | Msa0961300:intron | 30.0% |
| TAGAATGGTGAAATTTACGT+TGG | + | chr6_3:82528948-82528967 | Msa0961300:intron | 30.0% | |
| AGAATGGTGAAATTTACGTT+GGG | + | chr6_3:82528949-82528968 | Msa0961300:intron | 30.0% | |
| GAAATTTACGTTGGGTAAAA+TGG | + | chr6_3:82528957-82528976 | Msa0961300:intron | 30.0% | |
| ! | TTTTGTAGACTTCACTGAAA+TGG | + | chr6_3:82528989-82529008 | Msa0961300:intron | 30.0% |
| TTTGTAGACTTCACTGAAAT+GGG | + | chr6_3:82528990-82529009 | Msa0961300:intron | 30.0% | |
| GTGACATTAAGGAAACTAAT+AGG | - | chr6_3:82529092-82529111 | None:intergenic | 30.0% | |
| TGGCTGAAAATAGTTAATGT+CGG | - | chr6_3:82529201-82529220 | None:intergenic | 30.0% | |
| AATCTTTGGGTATGTACAAA+TGG | - | chr6_3:82529221-82529240 | None:intergenic | 30.0% | |
| ATACAAATAGATCAAAGTCG+TGG | - | chr6_3:82529281-82529300 | None:intergenic | 30.0% | |
| !! | ATATGTTTTAGGTATGAGGA+AGG | + | chr6_3:82529299-82529318 | Msa0961300:intron | 30.0% |
| ! | GGCTAATGGTAATGATTTAA+TGG | + | chr6_3:82529850-82529869 | Msa0961300:intron | 30.0% |
| GAGTCGAATAAATATGTCAT+TGG | + | chr6_3:82530074-82530093 | Msa0961300:CDS | 30.0% | |
| TCGAATAAATATGTCATTGG+AGG | + | chr6_3:82530077-82530096 | Msa0961300:CDS | 30.0% | |
| !! | AAAAGCATTCATACAGTCAT+CGG | - | chr6_3:82530243-82530262 | None:intergenic | 30.0% |
| ATGAAGAAGTTGACATTACA+AGG | + | chr6_3:82530438-82530457 | Msa0961300:CDS | 30.0% | |
| TGAAGAAGTTGACATTACAA+GGG | + | chr6_3:82530439-82530458 | Msa0961300:CDS | 30.0% | |
| ATTACAAGGGAAGATGATTT+AGG | + | chr6_3:82530452-82530471 | Msa0961300:CDS | 30.0% | |
| AATTCCAAGTGGAAAAAAAC+AGG | - | chr6_3:82530744-82530763 | None:intergenic | 30.0% | |
| ! | ACAAAGCAAGGAATGTTTTA+TGG | - | chr6_3:82530887-82530906 | None:intergenic | 30.0% |
| CGAAAACATTGTTGAAATTG+GGG | + | chr6_3:82531109-82531128 | Msa0961300:intron | 30.0% | |
| GACAAGTCTTAATATAGAAG+TGG | - | chr6_3:82531429-82531448 | None:intergenic | 30.0% | |
| TGTGAGATTTATTGATCCAA+TGG | - | chr6_3:82531502-82531521 | None:intergenic | 30.0% | |
| TTGCAGCACATATTAGTATA+GGG | - | chr6_3:82531624-82531643 | None:intergenic | 30.0% | |
| ATAGTCACAAACACATTAAG+TGG | - | chr6_3:82531694-82531713 | None:intergenic | 30.0% | |
| CTTCAAAGCTATATTCAAAG+TGG | + | chr6_3:82531783-82531802 | Msa0961300:intron | 30.0% | |
| ! | AACATTTGTTAGCAAAAGGA+CGG | + | chr6_3:82531877-82531896 | Msa0961300:CDS | 30.0% |
| TCGCTTGTATTTGATATGTT+TGG | + | chr6_3:82532021-82532040 | Msa0961300:intron | 30.0% | |
| ATTTGCAATCCTAGAGTTTA+TGG | + | chr6_3:82532167-82532186 | Msa0961300:intron | 30.0% | |
| AATATGAGCATGTTTGGATT+GGG | - | chr6_3:82532283-82532302 | None:intergenic | 30.0% | |
| TAATATGAGCATGTTTGGAT+TGG | - | chr6_3:82532284-82532303 | None:intergenic | 30.0% | |
| CATGGAAAAATTATTCAGTG+AGG | + | chr6_3:82532328-82532347 | Msa0961300:intron | 30.0% | |
| TCAGCAATCAAAAGAGAACT+TGG | + | chr6_3:82527499-82527518 | Msa0961300:CDS | 35.0% | |
| CAAAAATGAAAAAACCGTGG+GGG | + | chr6_3:82527537-82527556 | Msa0961300:CDS | 35.0% | |
| !!! | GTTAAACTTCGGTTTTGTTG+AGG | - | chr6_3:82527617-82527636 | None:intergenic | 35.0% |
| AAAAGGGAAAACAGTCTTGA+TGG | - | chr6_3:82527785-82527804 | None:intergenic | 35.0% | |
| !!! | GACTGTTTTCCCTTTTTCAA+AGG | + | chr6_3:82527789-82527808 | Msa0961300:intron | 35.0% |
| !!! | CTGTTTTCCCTTTTTCAAAG+GGG | + | chr6_3:82527791-82527810 | Msa0961300:intron | 35.0% |
| !!! | TGTTTTCCCTTTTTCAAAGG+GGG | + | chr6_3:82527792-82527811 | Msa0961300:intron | 35.0% |
| GAAAAGAGAAAGCCAGAAAT+AGG | + | chr6_3:82527862-82527881 | Msa0961300:CDS | 35.0% | |
| AAGGGCTTATATAAAAGAGC+AGG | + | chr6_3:82527891-82527910 | Msa0961300:CDS | 35.0% | |
| TCTGAACAGAATAACATTGG+GGG | + | chr6_3:82527961-82527980 | Msa0961300:CDS | 35.0% | |
| ATTACGTTTACCTCTTGCAT+TGG | + | chr6_3:82527984-82528003 | Msa0961300:CDS | 35.0% | |
| TCATATCTGGATGTACCTAT+TGG | + | chr6_3:82528150-82528169 | Msa0961300:CDS | 35.0% | |
| AGCACACAAAACTATTGTCA+TGG | - | chr6_3:82528306-82528325 | None:intergenic | 35.0% | |
| AGATAATAAGCCCACAAAGA+GGG | - | chr6_3:82528340-82528359 | None:intergenic | 35.0% | |
| AAGATAATAAGCCCACAAAG+AGG | - | chr6_3:82528341-82528360 | None:intergenic | 35.0% | |
| !! | TTTTTATGGTCTTAACCCTC+TGG | + | chr6_3:82528395-82528414 | Msa0961300:intron | 35.0% |
| TGATTAATGAGCTCCACTTA+AGG | - | chr6_3:82528502-82528521 | None:intergenic | 35.0% | |
| AGTGGAGCTCATTAATCATT+TGG | + | chr6_3:82528504-82528523 | Msa0961300:intron | 35.0% | |
| AACACACTCTTAGTGTACAA+AGG | - | chr6_3:82528543-82528562 | None:intergenic | 35.0% | |
| TAATTGTGTGTGTGTGTGTT+TGG | - | chr6_3:82528718-82528737 | None:intergenic | 35.0% | |
| TAAGGGATGCTTAATTCGTT+AGG | + | chr6_3:82528764-82528783 | Msa0961300:intron | 35.0% | |
| TAATTCGTTAGGCTTCTTTC+TGG | + | chr6_3:82528775-82528794 | Msa0961300:intron | 35.0% | |
| ACATTCACTTTGATGCCAAT+TGG | + | chr6_3:82528820-82528839 | Msa0961300:intron | 35.0% | |
| ! | AATCATTTTCATGGTCCACT+GGG | - | chr6_3:82529170-82529189 | None:intergenic | 35.0% |
| ! | TAATCATTTTCATGGTCCAC+TGG | - | chr6_3:82529171-82529190 | None:intergenic | 35.0% |
| GTGGACCATGAAAATGATTA+AGG | + | chr6_3:82529171-82529190 | Msa0961300:intron | 35.0% | |
| TGTTAGTCAAGGAATATCAG+AGG | + | chr6_3:82529344-82529363 | Msa0961300:CDS | 35.0% | |
| AAAACCTGATACAAGATCAG+AGG | - | chr6_3:82529373-82529392 | None:intergenic | 35.0% | |
| TCAGAGTCCCAATATTCATT+TGG | - | chr6_3:82529435-82529454 | None:intergenic | 35.0% | |
| TTACCCTAGTGACAATGAAA+AGG | + | chr6_3:82529536-82529555 | Msa0961300:CDS | 35.0% | |
| TACCCTAGTGACAATGAAAA+GGG | + | chr6_3:82529537-82529556 | Msa0961300:CDS | 35.0% | |
| ! | GAAGAGGATTCTTATTTCTC+TGG | + | chr6_3:82529636-82529655 | Msa0961300:intron | 35.0% |
| ! | TAAAGATGAAGCCACCATTT+TGG | + | chr6_3:82529769-82529788 | Msa0961300:intron | 35.0% |
| ! | AAAGATGAAGCCACCATTTT+GGG | + | chr6_3:82529770-82529789 | Msa0961300:intron | 35.0% |
| ! | TCTAGTTTACTTGGGAATGT+TGG | - | chr6_3:82529817-82529836 | None:intergenic | 35.0% |
| AATATGTATGGAAGGGCTAA+TGG | + | chr6_3:82529836-82529855 | Msa0961300:intron | 35.0% | |
| GATTTAATGGCTCAATACGA+TGG | + | chr6_3:82529863-82529882 | Msa0961300:intron | 35.0% | |
| TCAATACGATGGTGAATTGA+TGG | + | chr6_3:82529874-82529893 | Msa0961300:intron | 35.0% | |
| !! | GGAAAAGTTCTGAATCATAG+TGG | + | chr6_3:82529983-82530002 | Msa0961300:intron | 35.0% |
| ! | TGGCTATCTTTAAGAGATTG+AGG | - | chr6_3:82530158-82530177 | None:intergenic | 35.0% |
| TAAAGATAGCCAGATGATTC+AGG | + | chr6_3:82530166-82530185 | Msa0961300:CDS | 35.0% | |
| AAAGATAGCCAGATGATTCA+GGG | + | chr6_3:82530167-82530186 | Msa0961300:CDS | 35.0% | |
| ! | TGACTGTATGAATGCTTTTG+AGG | + | chr6_3:82530244-82530263 | Msa0961300:CDS | 35.0% |
| ! | GACTGTATGAATGCTTTTGA+GGG | + | chr6_3:82530245-82530264 | Msa0961300:CDS | 35.0% |
| !! | TATGAATGCTTTTGAGGGAT+CGG | + | chr6_3:82530250-82530269 | Msa0961300:CDS | 35.0% |
| CCAACTACTGTCGATAATTA+CGG | + | chr6_3:82530377-82530396 | Msa0961300:CDS | 35.0% | |
| CAACTACTGTCGATAATTAC+GGG | + | chr6_3:82530378-82530397 | Msa0961300:CDS | 35.0% | |
| TGATTTAGGTGTTTCACAAG+AGG | + | chr6_3:82530466-82530485 | Msa0961300:CDS | 35.0% | |
| GTGCACAATCTTTAGATTGA+AGG | - | chr6_3:82530558-82530577 | None:intergenic | 35.0% | |
| TCAATCTAAAGATTGTGCAC+AGG | + | chr6_3:82530558-82530577 | Msa0961300:intron | 35.0% | |
| AATGTGAAGAGAATTCCAAG+TGG | - | chr6_3:82530755-82530774 | None:intergenic | 35.0% | |
| ! | ATTGGTTCATAACAGTGCAT+TGG | + | chr6_3:82530800-82530819 | Msa0961300:intron | 35.0% |
| TTGGTTCATAACAGTGCATT+GGG | + | chr6_3:82530801-82530820 | Msa0961300:intron | 35.0% | |
| ACAGTGCATTGGGTTAATAA+TGG | + | chr6_3:82530811-82530830 | Msa0961300:intron | 35.0% | |
| ATTTCATGACTACTACACGA+GGG | - | chr6_3:82530996-82531015 | None:intergenic | 35.0% | |
| TAACTTTATGCCATGTCAGA+AGG | + | chr6_3:82531179-82531198 | Msa0961300:intron | 35.0% | |
| TATCATGTCACTGAGTAACT+GGG | + | chr6_3:82531270-82531289 | Msa0961300:intron | 35.0% | |
| GAGATTTATTGATCCAATGG+TGG | - | chr6_3:82531499-82531518 | None:intergenic | 35.0% | |
| !! | ATTGAGCCTTATTGATCCAA+TGG | + | chr6_3:82531541-82531560 | Msa0961300:intron | 35.0% |
| ! | CACAATGTGGTTTTTACCAT+TGG | - | chr6_3:82531560-82531579 | None:intergenic | 35.0% |
| GTTGCAGCACATATTAGTAT+AGG | - | chr6_3:82531625-82531644 | None:intergenic | 35.0% | |
| CAATGGAAACGAATGAAAAG+TGG | - | chr6_3:82531845-82531864 | None:intergenic | 35.0% | |
| ! | CAGGAACATTTGTTAGCAAA+AGG | + | chr6_3:82531873-82531892 | Msa0961300:intron | 35.0% |
| ! | ACATTTGTTAGCAAAAGGAC+GGG | + | chr6_3:82531878-82531897 | Msa0961300:CDS | 35.0% |
| ATAAGCACTTGTGAGACTTA+TGG | - | chr6_3:82532235-82532254 | None:intergenic | 35.0% | |
| ! | GGTATTGTGTATTGATATGC+AGG | + | chr6_3:82532349-82532368 | Msa0961300:intron | 35.0% |
| !! | AAGATGTCTTCTTTGGAATC+AGG | - | chr6_3:82532394-82532413 | None:intergenic | 35.0% |
| TTCCAAAGAAGACATCTTTG+AGG | + | chr6_3:82532396-82532415 | Msa0961300:CDS | 35.0% | |
| TTGAGGCATAGATTACCAAT+TGG | + | chr6_3:82532413-82532432 | Msa0961300:CDS | 35.0% | |
| TGAGGCATAGATTACCAATT+GGG | + | chr6_3:82532414-82532433 | Msa0961300:CDS | 35.0% | |
| !!! | CTTGCACCGTCATTTTTGAA+AGG | - | chr6_3:82527446-82527465 | None:intergenic | 40.0% |
| CAAGGCTAGTAATACTTCGA+AGG | + | chr6_3:82527466-82527485 | Msa0961300:CDS | 40.0% | |
| TTCGTCACTCAAAGAGAACT+TGG | + | chr6_3:82527693-82527712 | Msa0961300:intron | 40.0% | |
| ! | ACACATCCCCCTTTGAAAAA+GGG | - | chr6_3:82527801-82527820 | None:intergenic | 40.0% |
| GGCTTATATAAAAGAGCAGG+TGG | + | chr6_3:82527894-82527913 | Msa0961300:CDS | 40.0% | |
| ATAAAAGAGCAGGTGGATGA+AGG | + | chr6_3:82527901-82527920 | Msa0961300:CDS | 40.0% | |
| TAAAAGAGCAGGTGGATGAA+GGG | + | chr6_3:82527902-82527921 | Msa0961300:CDS | 40.0% | |
| ! | TTTTACTTGGGGAAGTTGCA+AGG | + | chr6_3:82527934-82527953 | Msa0961300:CDS | 40.0% |
| ! | ATTTTCACAGGAGAAAGCCT+TGG | - | chr6_3:82528030-82528049 | None:intergenic | 40.0% |
| AGAAGATAAGCCGTTGACAT+TGG | + | chr6_3:82528056-82528075 | Msa0961300:CDS | 40.0% | |
| AGTGTTTGAATCCGATGGAT+TGG | + | chr6_3:82528086-82528105 | Msa0961300:CDS | 40.0% | |
| GCTGACAGCTCTTTACTTAT+TGG | + | chr6_3:82528126-82528145 | Msa0961300:CDS | 40.0% | |
| AGTGCAATTTCCCTCTTTGT+GGG | + | chr6_3:82528327-82528346 | Msa0961300:intron | 40.0% | |
| ! | GGATTTTCTTGAGAACCAGA+GGG | - | chr6_3:82528413-82528432 | None:intergenic | 40.0% |
| TTCCAGCCAGGATTCAAATT+TGG | + | chr6_3:82528457-82528476 | Msa0961300:intron | 40.0% | |
| TCCAGCCAGGATTCAAATTT+GGG | + | chr6_3:82528458-82528477 | Msa0961300:intron | 40.0% | |
| GAGAACCCAAATTTGAATCC+TGG | - | chr6_3:82528466-82528485 | None:intergenic | 40.0% | |
| CACTTAAGGATGAATCGTAC+GGG | - | chr6_3:82528488-82528507 | None:intergenic | 40.0% | |
| CCACTTAAGGATGAATCGTA+CGG | - | chr6_3:82528489-82528508 | None:intergenic | 40.0% | |
| !! | TGTGTTTGCGAGTTGGATTT+TGG | + | chr6_3:82528557-82528576 | Msa0961300:intron | 40.0% |
| !! | TTTGCGAGTTGGATTTTGGA+GGG | + | chr6_3:82528561-82528580 | Msa0961300:intron | 40.0% |
| !! | AGTTGGATTTTGGAGGGTTA+TGG | + | chr6_3:82528567-82528586 | Msa0961300:intron | 40.0% |
| ! | TATGGAGGGTAAGGCTTTAA+AGG | + | chr6_3:82528585-82528604 | Msa0961300:intron | 40.0% |
| !! | ATGGAGGGTAAGGCTTTAAA+GGG | + | chr6_3:82528586-82528605 | Msa0961300:intron | 40.0% |
| TAAAACATCCAGGGTGTGTA+TGG | - | chr6_3:82528746-82528765 | None:intergenic | 40.0% | |
| ! | TACACACCCTGGATGTTTTA+AGG | + | chr6_3:82528746-82528765 | Msa0961300:intron | 40.0% |
| !! | ACACACCCTGGATGTTTTAA+GGG | + | chr6_3:82528747-82528766 | Msa0961300:intron | 40.0% |
| AGCATCCCTTAAAACATCCA+GGG | - | chr6_3:82528755-82528774 | None:intergenic | 40.0% | |
| AAGCATCCCTTAAAACATCC+AGG | - | chr6_3:82528756-82528775 | None:intergenic | 40.0% | |
| TGAAAGAGATTCAGGTGCTA+AGG | - | chr6_3:82528891-82528910 | None:intergenic | 40.0% | |
| GATACCTCTGATCTTGTATC+AGG | + | chr6_3:82529366-82529385 | Msa0961300:CDS | 40.0% | |
| ! | GTATCAGGTTTTGCTACAGT+TGG | + | chr6_3:82529381-82529400 | Msa0961300:CDS | 40.0% |
| !!! | GTTTTGCTACAGTTGGTGAT+GGG | + | chr6_3:82529388-82529407 | Msa0961300:CDS | 40.0% |
| GTACATGAGACAACCTATTG+AGG | + | chr6_3:82529482-82529501 | Msa0961300:CDS | 40.0% | |
| ACCCTAGTGACAATGAAAAG+GGG | + | chr6_3:82529538-82529557 | Msa0961300:CDS | 40.0% | |
| ! | TCCCCTTTTCATTGTCACTA+GGG | - | chr6_3:82529542-82529561 | None:intergenic | 40.0% |
| TCAAGCAAAGAATGTTGAGC+CGG | + | chr6_3:82529671-82529690 | Msa0961300:intron | 40.0% | |
| TTAGTAACCGTTACACCGAT+AGG | - | chr6_3:82529714-82529733 | None:intergenic | 40.0% | |
| ! | AAGATGAAGCCACCATTTTG+GGG | + | chr6_3:82529771-82529790 | Msa0961300:intron | 40.0% |
| ! | TGGTGAATTGATGGATGTAG+AGG | + | chr6_3:82529883-82529902 | Msa0961300:intron | 40.0% |
| ACAAACGACCTGATCATGTT+GGG | + | chr6_3:82529956-82529975 | Msa0961300:intron | 40.0% | |
| ! | ATAGTGGAAGATCACGACTT+CGG | + | chr6_3:82529999-82530018 | Msa0961300:intron | 40.0% |
| CGACTTCGGAAAGAATTCTA+TGG | + | chr6_3:82530013-82530032 | Msa0961300:CDS | 40.0% | |
| ATTTAACCATGGCGACTTAC+TGG | - | chr6_3:82530201-82530220 | None:intergenic | 40.0% | |
| ATGAAATGCTTTCTTCGTGG+AGG | + | chr6_3:82530273-82530292 | Msa0961300:CDS | 40.0% | |
| TTCACCCGAGAAAAGTTCTA+GGG | + | chr6_3:82530313-82530332 | Msa0961300:CDS | 40.0% | |
| ! | TCATCCCTAGAACTTTTCTC+GGG | - | chr6_3:82530320-82530339 | None:intergenic | 40.0% |
| ! | CTCATCCCTAGAACTTTTCT+CGG | - | chr6_3:82530321-82530340 | None:intergenic | 40.0% |
| GGATGAGAATAATGCTCATG+CGG | + | chr6_3:82530334-82530353 | Msa0961300:CDS | 40.0% | |
| CCGTAATTATCGACAGTAGT+TGG | - | chr6_3:82530380-82530399 | None:intergenic | 40.0% | |
| AGAGCATGTCAAGCTAGAAA+AGG | + | chr6_3:82530412-82530431 | Msa0961300:CDS | 40.0% | |
| AGAGCAGGTAAGGCAAATAA+AGG | + | chr6_3:82530511-82530530 | Msa0961300:intron | 40.0% | |
| AGATTGTGCACAGGAAAAAC+AGG | + | chr6_3:82530567-82530586 | Msa0961300:intron | 40.0% | |
| !!! | GTTGCCTGTTTTTTTCCACT+TGG | + | chr6_3:82530737-82530756 | Msa0961300:intron | 40.0% |
| GATTTCATGACTACTACACG+AGG | - | chr6_3:82530997-82531016 | None:intergenic | 40.0% | |
| ATGTTATACAGTCTCGCGTA+CGG | - | chr6_3:82531064-82531083 | None:intergenic | 40.0% | |
| CTATCATGTCACTGAGTAAC+TGG | + | chr6_3:82531269-82531288 | Msa0961300:intron | 40.0% | |
| ACAAGCATATTTGCCACCAT+TGG | + | chr6_3:82531483-82531502 | Msa0961300:intron | 40.0% | |
| GGTAAAAACCACATTGTGCA+TGG | + | chr6_3:82531562-82531581 | Msa0961300:intron | 40.0% | |
| TTGATATGCAGGAAAGCAAC+AGG | + | chr6_3:82532360-82532379 | Msa0961300:intron | 40.0% | |
| TGCCTCAAAGATGTCTTCTT+TGG | - | chr6_3:82532401-82532420 | None:intergenic | 40.0% | |
| GAGGCATAGATTACCAATTG+GGG | + | chr6_3:82532415-82532434 | Msa0961300:CDS | 40.0% | |
| CAAAAATGACGGTGCAAGCA+AGG | + | chr6_3:82527448-82527467 | Msa0961300:CDS | 45.0% | |
| ! | GGGAACATTATTTTCCCCCA+CGG | - | chr6_3:82527554-82527573 | None:intergenic | 45.0% |
| ! | CACAAGGGTTTTTGCTCATC+GGG | - | chr6_3:82527574-82527593 | None:intergenic | 45.0% |
| ! | CCACAAGGGTTTTTGCTCAT+CGG | - | chr6_3:82527575-82527594 | None:intergenic | 45.0% |
| ! | GACACATCCCCCTTTGAAAA+AGG | - | chr6_3:82527802-82527821 | None:intergenic | 45.0% |
| AGCCAGAAATAGGTGATGCA+AGG | + | chr6_3:82527872-82527891 | Msa0961300:CDS | 45.0% | |
| GCCAGAAATAGGTGATGCAA+GGG | + | chr6_3:82527873-82527892 | Msa0961300:CDS | 45.0% | |
| AAAAGAGCAGGTGGATGAAG+GGG | + | chr6_3:82527903-82527922 | Msa0961300:CDS | 45.0% | |
| TTCTGCTTCTCCAATGCAAG+AGG | - | chr6_3:82527997-82528016 | None:intergenic | 45.0% | |
| TCTTGCATTGGAGAAGCAGA+AGG | + | chr6_3:82527996-82528015 | Msa0961300:CDS | 45.0% | |
| !! | AGCAGAAGGAAGAGTATCCA+AGG | + | chr6_3:82528010-82528029 | Msa0961300:CDS | 45.0% |
| !! | ACTTCTGGCTCCAATGTCAA+CGG | - | chr6_3:82528069-82528088 | None:intergenic | 45.0% |
| CCATCGGATTCAAACACTTC+TGG | - | chr6_3:82528084-82528103 | None:intergenic | 45.0% | |
| !! | CCAGAAGTGTTTGAATCCGA+TGG | + | chr6_3:82528081-82528100 | Msa0961300:CDS | 45.0% |
| TCTTGTAGCTGTTCCACCTT+TGG | + | chr6_3:82528248-82528267 | Msa0961300:intron | 45.0% | |
| CTTGTAGCTGTTCCACCTTT+GGG | + | chr6_3:82528249-82528268 | Msa0961300:intron | 45.0% | |
| TTGTAGCTGTTCCACCTTTG+GGG | + | chr6_3:82528250-82528269 | Msa0961300:intron | 45.0% | |
| ACAGTAATTAGAGCCCCCAA+AGG | - | chr6_3:82528267-82528286 | None:intergenic | 45.0% | |
| CAGTGCAATTTCCCTCTTTG+TGG | + | chr6_3:82528326-82528345 | Msa0961300:intron | 45.0% | |
| ! | GGGATTTTCTTGAGAACCAG+AGG | - | chr6_3:82528414-82528433 | None:intergenic | 45.0% |
| ACCCAAATTTGAATCCTGGC+TGG | - | chr6_3:82528462-82528481 | None:intergenic | 45.0% | |
| CCGTACGATTCATCCTTAAG+TGG | + | chr6_3:82528486-82528505 | Msa0961300:intron | 45.0% | |
| ! | CTAAGAGTGTGTTTGCGAGT+TGG | + | chr6_3:82528550-82528569 | Msa0961300:intron | 45.0% |
| !! | GTTTGCGAGTTGGATTTTGG+AGG | + | chr6_3:82528560-82528579 | Msa0961300:intron | 45.0% |
| !! | TGGATTTTGGAGGGTTATGG+AGG | + | chr6_3:82528570-82528589 | Msa0961300:intron | 45.0% |
| !! | GGATTTTGGAGGGTTATGGA+GGG | + | chr6_3:82528571-82528590 | Msa0961300:intron | 45.0% |
| ! | AGGCTTCTTTCTGGTATGCA+TGG | + | chr6_3:82528784-82528803 | Msa0961300:intron | 45.0% |
| TTAGGTATGAGGAAGGCTAC+AGG | + | chr6_3:82529306-82529325 | Msa0961300:intron | 45.0% | |
| TAGGTATGAGGAAGGCTACA+GGG | + | chr6_3:82529307-82529326 | Msa0961300:intron | 45.0% | |
| AGTTGGCTGTCTGTTAGTCA+AGG | + | chr6_3:82529333-82529352 | Msa0961300:CDS | 45.0% | |
| !!! | GGTTTTGCTACAGTTGGTGA+TGG | + | chr6_3:82529387-82529406 | Msa0961300:CDS | 45.0% |
| GAGACAACCTATTGAGGATG+AGG | + | chr6_3:82529488-82529507 | Msa0961300:CDS | 45.0% | |
| ! | GTCCCCTTTTCATTGTCACT+AGG | - | chr6_3:82529543-82529562 | None:intergenic | 45.0% |
| AGTGACAATGAAAAGGGGAC+TGG | + | chr6_3:82529543-82529562 | Msa0961300:CDS | 45.0% | |
| GTGACAATGAAAAGGGGACT+GGG | + | chr6_3:82529544-82529563 | Msa0961300:CDS | 45.0% | |
| TTGATCGTCATCCTCCACTT+TGG | - | chr6_3:82529607-82529626 | None:intergenic | 45.0% | |
| GGATGACGATCAATCTTTCG+CGG | + | chr6_3:82529614-82529633 | Msa0961300:intron | 45.0% | |
| AAGAATGTTGAGCCGGTCAT+AGG | + | chr6_3:82529678-82529697 | Msa0961300:intron | 45.0% | |
| AGAATGTTGAGCCGGTCATA+GGG | + | chr6_3:82529679-82529698 | Msa0961300:intron | 45.0% | |
| ATAGGGTCAGATGCTCCTAT+CGG | + | chr6_3:82529696-82529715 | Msa0961300:intron | 45.0% | |
| AGATGCTCCTATCGGTGTAA+CGG | + | chr6_3:82529704-82529723 | Msa0961300:intron | 45.0% | |
| CTACTTCGAAAGCCCCAAAA+TGG | - | chr6_3:82529786-82529805 | None:intergenic | 45.0% | |
| TGATCAGGTCGTTTGTCTGA+GGG | - | chr6_3:82529952-82529971 | None:intergenic | 45.0% | |
| ATGATCAGGTCGTTTGTCTG+AGG | - | chr6_3:82529953-82529972 | None:intergenic | 45.0% | |
| GACAAACGACCTGATCATGT+TGG | + | chr6_3:82529955-82529974 | Msa0961300:intron | 45.0% | |
| TTCCATCTCCCAACATGATC+AGG | - | chr6_3:82529967-82529986 | None:intergenic | 45.0% | |
| CGGATGAAATGCTTTCTTCG+TGG | + | chr6_3:82530270-82530289 | Msa0961300:CDS | 45.0% | |
| CTTCACCCGAGAAAAGTTCT+AGG | + | chr6_3:82530312-82530331 | Msa0961300:CDS | 45.0% | |
| ! | GATTGCTGTTGTACAAGAGC+AGG | + | chr6_3:82530496-82530515 | Msa0961300:CDS | 45.0% |
| CTGTTGTACAAGAGCAGGTA+AGG | + | chr6_3:82530501-82530520 | Msa0961300:intron | 45.0% | |
| GGTAAGGCAAATAAAGGCTC+AGG | + | chr6_3:82530517-82530536 | Msa0961300:intron | 45.0% | |
| AAGGCAAATAAAGGCTCAGG+AGG | + | chr6_3:82530520-82530539 | Msa0961300:intron | 45.0% | |
| TCCCTTGTGCACAATAGACT+TGG | + | chr6_3:82531598-82531617 | Msa0961300:intron | 45.0% | |
| GCCAAGTCTATTGTGCACAA+GGG | - | chr6_3:82531602-82531621 | None:intergenic | 45.0% | |
| ATGTTCCTGCAGTGCAACAA+TGG | - | chr6_3:82531862-82531881 | None:intergenic | 45.0% | |
| AGATTACCAATTGGGGACCA+AGG | + | chr6_3:82532422-82532441 | Msa0961300:CDS | 45.0% | |
| CAACGAAGTCAATGAAGCCT+TGG | - | chr6_3:82532442-82532461 | None:intergenic | 45.0% | |
| ! | TTTAGAGCTTCACACGCAGA+AGG | - | chr6_3:82532497-82532516 | None:intergenic | 45.0% |
| !! | TTAATAATTTAATAATATCA+TGG | - | chr6_3:82528203-82528222 | None:intergenic | 5.0% |
| CCGATGAGCAAAAACCCTTG+TGG | + | chr6_3:82527572-82527591 | Msa0961300:CDS | 50.0% | |
| GAGCAAAAACCCTTGTGGCT+TGG | + | chr6_3:82527577-82527596 | Msa0961300:CDS | 50.0% | |
| CCACTACTTCCAAGCCACAA+GGG | - | chr6_3:82527589-82527608 | None:intergenic | 50.0% | |
| ACCACTACTTCCAAGCCACA+AGG | - | chr6_3:82527590-82527609 | None:intergenic | 50.0% | |
| ! | GTGGCTTGGAAGTAGTGGTA+AGG | + | chr6_3:82527591-82527610 | Msa0961300:intron | 50.0% |
| GCCCTTGCATCACCTATTTC+TGG | - | chr6_3:82527877-82527896 | None:intergenic | 50.0% | |
| AAAGAGCAGGTGGATGAAGG+GGG | + | chr6_3:82527904-82527923 | Msa0961300:CDS | 50.0% | |
| ! | AGGGGGGAGAGCTTTTTACT+TGG | + | chr6_3:82527921-82527940 | Msa0961300:CDS | 50.0% |
| ! | GGGGGGAGAGCTTTTTACTT+GGG | + | chr6_3:82527922-82527941 | Msa0961300:CDS | 50.0% |
| ! | GGGGGAGAGCTTTTTACTTG+GGG | + | chr6_3:82527923-82527942 | Msa0961300:CDS | 50.0% |
| CAGCTTAGCAGCCAATCCAT+CGG | - | chr6_3:82528100-82528119 | None:intergenic | 50.0% | |
| TGTAGCTGTTCCACCTTTGG+GGG | + | chr6_3:82528251-82528270 | Msa0961300:intron | 50.0% | |
| GTAATTAGAGCCCCCAAAGG+TGG | - | chr6_3:82528264-82528283 | None:intergenic | 50.0% | |
| TGGCTGGAACAATCCTTGGA+GGG | - | chr6_3:82528446-82528465 | None:intergenic | 50.0% | |
| ATCCTGGCTGGAACAATCCT+TGG | - | chr6_3:82528450-82528469 | None:intergenic | 50.0% | |
| TTGGAGGGTTATGGAGGGTA+AGG | + | chr6_3:82528576-82528595 | Msa0961300:intron | 50.0% | |
| ACATCCAGGGTGTGTATGGA+GGG | - | chr6_3:82528742-82528761 | None:intergenic | 50.0% | |
| AACATCCAGGGTGTGTATGG+AGG | - | chr6_3:82528743-82528762 | None:intergenic | 50.0% | |
| CAGGTGCTAAGGCTAGTAAG+TGG | - | chr6_3:82528880-82528899 | None:intergenic | 50.0% | |
| ! | TCCACTGGGATTAGCACAGA+GGG | - | chr6_3:82529156-82529175 | None:intergenic | 50.0% |
| AGGTATGAGGAAGGCTACAG+GGG | + | chr6_3:82529308-82529327 | Msa0961300:intron | 50.0% | |
| TATGACGACGACGACGATGT+TGG | + | chr6_3:82529459-82529478 | Msa0961300:CDS | 50.0% | |
| ATGACGACGACGACGATGTT+GGG | + | chr6_3:82529460-82529479 | Msa0961300:CDS | 50.0% | |
| AACCTATTGAGGATGAGGCC+TGG | + | chr6_3:82529493-82529512 | Msa0961300:CDS | 50.0% | |
| AACCAGGCCTCATCCTCAAT+AGG | - | chr6_3:82529498-82529517 | None:intergenic | 50.0% | |
| !! | TGAGGATGAGGCCTGGTTTT+TGG | + | chr6_3:82529500-82529519 | Msa0961300:CDS | 50.0% |
| GATTTCGTGCGCCAAAAACC+AGG | - | chr6_3:82529514-82529533 | None:intergenic | 50.0% | |
| AATGAAAAGGGGACTGGGCA+TGG | + | chr6_3:82529549-82529568 | Msa0961300:CDS | 50.0% | |
| GTTCCAGATCCACAGGAAAG+AGG | + | chr6_3:82529576-82529595 | Msa0961300:CDS | 50.0% | |
| CGATCAATCTTTCGCGGAAG+AGG | + | chr6_3:82529620-82529639 | Msa0961300:intron | 50.0% | |
| CTTCGAAAGCCCCAAAATGG+TGG | - | chr6_3:82529783-82529802 | None:intergenic | 50.0% | |
| GGAACTGAATCTGATGCACG+CGG | + | chr6_3:82529904-82529923 | Msa0961300:intron | 50.0% | |
| GACCTGATCATGTTGGGAGA+TGG | + | chr6_3:82529962-82529981 | Msa0961300:intron | 50.0% | |
| GATAGCCAGATGATTCAGGG+TGG | + | chr6_3:82530170-82530189 | Msa0961300:CDS | 50.0% | |
| AACCACCACCCTGAATCATC+TGG | - | chr6_3:82530178-82530197 | None:intergenic | 50.0% | |
| GCAAATAAAGGCTCAGGAGG+AGG | + | chr6_3:82530523-82530542 | Msa0961300:intron | 50.0% | |
| GCTCATTGAGCCTTCTGACA+TGG | - | chr6_3:82531192-82531211 | None:intergenic | 50.0% | |
| GTGCAGGTCATGAGCTTGTA+TGG | - | chr6_3:82531316-82531335 | None:intergenic | 50.0% | |
| GTCTTGCACCATGCACAATG+TGG | - | chr6_3:82531573-82531592 | None:intergenic | 50.0% | |
| GGCCAAGTCTATTGTGCACA+AGG | - | chr6_3:82531603-82531622 | None:intergenic | 50.0% | |
| CGTTTCCATTGTTGCACTGC+AGG | + | chr6_3:82531854-82531873 | Msa0961300:intron | 50.0% | |
| ATGAAGCCTTGGTCCCCAAT+TGG | - | chr6_3:82532431-82532450 | None:intergenic | 50.0% | |
| CTTCGTTGCTCATTTGCTCG+AGG | + | chr6_3:82532454-82532473 | Msa0961300:CDS | 50.0% | |
| ! | CCCTTGTGGCTTGGAAGTAG+TGG | + | chr6_3:82527586-82527605 | Msa0961300:CDS | 55.0% |
| AAGAGCAGGTGGATGAAGGG+GGG | + | chr6_3:82527905-82527924 | Msa0961300:CDS | 55.0% | |
| !! | CGATGGATTGGCTGCTAAGC+TGG | + | chr6_3:82528098-82528117 | Msa0961300:CDS | 55.0% |
| GAACAATCCTTGGAGGGGAG+GGG | - | chr6_3:82528440-82528459 | None:intergenic | 55.0% | |
| GGAACAATCCTTGGAGGGGA+GGG | - | chr6_3:82528441-82528460 | None:intergenic | 55.0% | |
| TGGAACAATCCTTGGAGGGG+AGG | - | chr6_3:82528442-82528461 | None:intergenic | 55.0% | |
| GGCTGGAACAATCCTTGGAG+GGG | - | chr6_3:82528445-82528464 | None:intergenic | 55.0% | |
| CTGGCTGGAACAATCCTTGG+AGG | - | chr6_3:82528447-82528466 | None:intergenic | 55.0% | |
| CTCCAAGGATTGTTCCAGCC+AGG | + | chr6_3:82528445-82528464 | Msa0961300:intron | 55.0% | |
| TTAGCCCTCCATACACACCC+TGG | + | chr6_3:82528735-82528754 | Msa0961300:intron | 55.0% | |
| ! | CCACTGGGATTAGCACAGAG+GGG | - | chr6_3:82529155-82529174 | None:intergenic | 55.0% |
| ! | GTCCACTGGGATTAGCACAG+AGG | - | chr6_3:82529157-82529176 | None:intergenic | 55.0% |
| GGTATGAGGAAGGCTACAGG+GGG | + | chr6_3:82529309-82529328 | Msa0961300:intron | 55.0% | |
| !! | TGGAAGCGTTCCAGATCCAC+AGG | + | chr6_3:82529569-82529588 | Msa0961300:CDS | 55.0% |
| GGACCTCTTTCCTGTGGATC+TGG | - | chr6_3:82529582-82529601 | None:intergenic | 55.0% | |
| TTGGCAGGACCTCTTTCCTG+TGG | - | chr6_3:82529588-82529607 | None:intergenic | 55.0% | |
| GGAAAGAGGTCCTGCCAAAG+TGG | + | chr6_3:82529590-82529609 | Msa0961300:intron | 55.0% | |
| AAGAGGTCCTGCCAAAGTGG+AGG | + | chr6_3:82529593-82529612 | Msa0961300:intron | 55.0% | |
| TCGTCATCCTCCACTTTGGC+AGG | - | chr6_3:82529603-82529622 | None:intergenic | 55.0% | |
| ! | GGAGCATCTGACCCTATGAC+CGG | - | chr6_3:82529693-82529712 | None:intergenic | 55.0% |
| AGCCAGATGATTCAGGGTGG+TGG | + | chr6_3:82530173-82530192 | Msa0961300:CDS | 55.0% | |
| GTGGTTCCAGTAAGTCGCCA+TGG | + | chr6_3:82530192-82530211 | Msa0961300:CDS | 55.0% | |
| CAAGCTCATGACCTGCACAC+AGG | + | chr6_3:82531318-82531337 | Msa0961300:intron | 55.0% | |
| TCATGACCTGCACACAGGTG+TGG | + | chr6_3:82531323-82531342 | Msa0961300:intron | 55.0% | |
| TTGTCTCCACACCTGTGTGC+AGG | - | chr6_3:82531332-82531351 | None:intergenic | 55.0% | |
| ACGCAGAAGGTCGCTTCTTC+GGG | - | chr6_3:82532484-82532503 | None:intergenic | 55.0% | |
| CACGCAGAAGGTCGCTTCTT+CGG | - | chr6_3:82532485-82532504 | None:intergenic | 55.0% | |
| AATCCTTGGAGGGGAGGGGA+GGG | - | chr6_3:82528436-82528455 | None:intergenic | 60.0% | |
| CCCCTCTGTGCTAATCCCAG+TGG | + | chr6_3:82529152-82529171 | Msa0961300:intron | 60.0% | |
| ATCCTTGGAGGGGAGGGGAG+GGG | - | chr6_3:82528435-82528454 | None:intergenic | 65.0% | |
| CAATCCTTGGAGGGGAGGGG+AGG | - | chr6_3:82528437-82528456 | None:intergenic | 65.0% | |
| GGAAGGCTACAGGGGGCAGT+TGG | + | chr6_3:82529316-82529335 | Msa0961300:CDS | 65.0% | |
| TGATGCACGCGGAGCCTGTC+TGG | + | chr6_3:82529915-82529934 | Msa0961300:intron | 65.0% | |
| GGGACAAAGCCCTGCCAGAC+AGG | - | chr6_3:82529932-82529951 | None:intergenic | 65.0% | |
| TCCTTGGAGGGGAGGGGAGG+GGG | - | chr6_3:82528434-82528453 | None:intergenic | 70.0% | |
| CACGCGGAGCCTGTCTGGCA+GGG | + | chr6_3:82529920-82529939 | Msa0961300:intron | 70.0% | |
| TCCCCCTCCCCTCCCCTCCA+AGG | + | chr6_3:82528430-82528449 | Msa0961300:intron | 75.0% | |
| GCACGCGGAGCCTGTCTGGC+AGG | + | chr6_3:82529919-82529938 | Msa0961300:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 82527443 | 82532537 | 82527443 | ID=Msa0961300;Name=Msa0961300 |
| chr6_3 | mRNA | 82527443 | 82532537 | 82527443 | ID=Msa0961300-mRNA-1;Parent=Msa0961300;Name=Msa0961300-mRNA-1;_AED=0.17;_eAED=0.21;_QI=0|0.2|0.16|1|1|0.83|6|11|526 |
| chr6_3 | exon | 82527443 | 82527607 | 82527443 | ID=Msa0961300-mRNA-1:exon:14762;Parent=Msa0961300-mRNA-1 |
| chr6_3 | exon | 82527811 | 82528192 | 82527811 | ID=Msa0961300-mRNA-1:exon:14763;Parent=Msa0961300-mRNA-1 |
| chr6_3 | exon | 82529310 | 82529597 | 82529310 | ID=Msa0961300-mRNA-1:exon:14764;Parent=Msa0961300-mRNA-1 |
| chr6_3 | exon | 82530003 | 82530517 | 82530003 | ID=Msa0961300-mRNA-1:exon:14765;Parent=Msa0961300-mRNA-1 |
| chr6_3 | exon | 82531876 | 82531950 | 82531876 | ID=Msa0961300-mRNA-1:exon:14766;Parent=Msa0961300-mRNA-1 |
| chr6_3 | exon | 82532371 | 82532537 | 82532371 | ID=Msa0961300-mRNA-1:exon:14767;Parent=Msa0961300-mRNA-1 |
| chr6_3 | CDS | 82527443 | 82527607 | 82527443 | ID=Msa0961300-mRNA-1:cds;Parent=Msa0961300-mRNA-1 |
| chr6_3 | CDS | 82527811 | 82528192 | 82527811 | ID=Msa0961300-mRNA-1:cds;Parent=Msa0961300-mRNA-1 |
| chr6_3 | CDS | 82529310 | 82529597 | 82529310 | ID=Msa0961300-mRNA-1:cds;Parent=Msa0961300-mRNA-1 |
| chr6_3 | CDS | 82530003 | 82530517 | 82530003 | ID=Msa0961300-mRNA-1:cds;Parent=Msa0961300-mRNA-1 |
| chr6_3 | CDS | 82531876 | 82531950 | 82531876 | ID=Msa0961300-mRNA-1:cds;Parent=Msa0961300-mRNA-1 |
| chr6_3 | CDS | 82532371 | 82532526 | 82532371 | ID=Msa0961300-mRNA-1:cds;Parent=Msa0961300-mRNA-1 |
| chr6_3 | three_prime_UTR | 82532527 | 82532537 | 82532527 | ID=Msa0961300-mRNA-1:three_prime_utr;Parent=Msa0961300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
