Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138030 | XP_003621527.1 | 97.531 | 324 | 8 | 0 | 1 | 324 | 1 | 324 | 0.0 | 656 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138030 | sp|Q93YQ3|PURU1_ARATH | 77.931 | 290 | 64 | 0 | 35 | 324 | 34 | 323 | 4.45e-176 | 493 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138030 | G7KR22 | 97.531 | 324 | 8 | 0 | 1 | 324 | 1 | 324 | 0.0 | 656 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007160 | Msa1138030 | 0.806153 | 9.446483e-50 | -8.615850e-47 |
| Msa0014960 | Msa1138030 | 0.833353 | 5.598652e-56 | -8.615850e-47 |
| Msa0021300 | Msa1138030 | 0.803873 | 2.832346e-49 | -8.615850e-47 |
| Msa0081300 | Msa1138030 | 0.814784 | 1.291348e-51 | -8.615850e-47 |
| Msa0083570 | Msa1138030 | 0.800463 | 1.424419e-48 | -8.615850e-47 |
| Msa0112290 | Msa1138030 | 0.808496 | 3.010358e-50 | -8.615850e-47 |
| Msa0619060 | Msa1138030 | 0.817142 | 3.844590e-52 | -8.615850e-47 |
| Msa0624220 | Msa1138030 | 0.804893 | 1.735892e-49 | -8.615850e-47 |
| Msa0624240 | Msa1138030 | 0.811309 | 7.467871e-51 | -8.615850e-47 |
| Msa0624260 | Msa1138030 | 0.820119 | 8.116888e-53 | -8.615850e-47 |
| Msa0624360 | Msa1138030 | 0.807314 | 5.369940e-50 | -8.615850e-47 |
| Msa0640880 | Msa1138030 | 0.812698 | 3.720033e-51 | -8.615850e-47 |
| Msa0647460 | Msa1138030 | 0.811624 | 6.377585e-51 | -8.615850e-47 |
| Msa0679270 | Msa1138030 | 0.801349 | 9.389864e-49 | -8.615850e-47 |
| Msa0704570 | Msa1138030 | 0.814226 | 1.716138e-51 | -8.615850e-47 |
| Msa0704720 | Msa1138030 | 0.811241 | 7.724652e-51 | -8.615850e-47 |
| Msa0705250 | Msa1138030 | 0.803767 | 2.979267e-49 | -8.615850e-47 |
| Msa0716670 | Msa1138030 | 0.803432 | 3.496782e-49 | -8.615850e-47 |
| Msa0720380 | Msa1138030 | 0.800588 | 1.343461e-48 | -8.615850e-47 |
| Msa0775970 | Msa1138030 | 0.815396 | 9.443854e-52 | -8.615850e-47 |
| Msa0792860 | Msa1138030 | 0.816574 | 5.154478e-52 | -8.615850e-47 |
| Msa0794130 | Msa1138030 | 0.800280 | 1.551765e-48 | -8.615850e-47 |
| Msa0149070 | Msa1138030 | 0.819883 | 9.191655e-53 | -8.615850e-47 |
| Msa0156260 | Msa1138030 | 0.801506 | 8.720401e-49 | -8.615850e-47 |
| Msa0164790 | Msa1138030 | 0.812826 | 3.487265e-51 | -8.615850e-47 |
| Msa0175100 | Msa1138030 | 0.800277 | 1.554514e-48 | -8.615850e-47 |
| Msa0182610 | Msa1138030 | 0.805923 | 1.056030e-49 | -8.615850e-47 |
| Msa0190000 | Msa1138030 | 0.832410 | 9.603124e-56 | -8.615850e-47 |
| Msa0202150 | Msa1138030 | 0.816049 | 6.756739e-52 | -8.615850e-47 |
| Msa0202630 | Msa1138030 | 0.801389 | 9.214759e-49 | -8.615850e-47 |
| Msa0210780 | Msa1138030 | 0.822484 | 2.311536e-53 | -8.615850e-47 |
| Msa0210840 | Msa1138030 | 0.829796 | 4.211652e-55 | -8.615850e-47 |
| Msa0215980 | Msa1138030 | 0.813380 | 2.636167e-51 | -8.615850e-47 |
| Msa0370180 | Msa1138030 | 0.803027 | 4.240366e-49 | -8.615850e-47 |
| Msa0377460 | Msa1138030 | 0.802743 | 4.854594e-49 | -8.615850e-47 |
| Msa0379450 | Msa1138030 | 0.805404 | 1.357082e-49 | -8.615850e-47 |
| Msa0399180 | Msa1138030 | 0.818799 | 1.623496e-52 | -8.615850e-47 |
| Msa0401370 | Msa1138030 | 0.818610 | 1.791733e-52 | -8.615850e-47 |
| Msa0444340 | Msa1138030 | 0.833592 | 4.880374e-56 | -8.615850e-47 |
| Msa0466830 | Msa1138030 | 0.842007 | 3.362069e-58 | -8.615850e-47 |
| Msa1021220 | Msa1138030 | 0.802744 | 4.850217e-49 | -8.615850e-47 |
| Msa1067430 | Msa1138030 | 0.802960 | 4.376735e-49 | -8.615850e-47 |
| Msa1067910 | Msa1138030 | 0.800206 | 1.606744e-48 | -8.615850e-47 |
| Msa0247310 | Msa1138030 | 0.807937 | 3.960139e-50 | -8.615850e-47 |
| Msa0251110 | Msa1138030 | 0.808834 | 2.549460e-50 | -8.615850e-47 |
| Msa0253410 | Msa1138030 | 0.834186 | 3.467539e-56 | -8.615850e-47 |
| Msa0284260 | Msa1138030 | 0.806896 | 6.584290e-50 | -8.615850e-47 |
| Msa0304870 | Msa1138030 | 0.806647 | 7.431884e-50 | -8.615850e-47 |
| Msa0307460 | Msa1138030 | 0.812779 | 3.570098e-51 | -8.615850e-47 |
| Msa0341260 | Msa1138030 | 0.806551 | 7.785789e-50 | -8.615850e-47 |
| Msa1121630 | Msa1138030 | 0.819999 | 8.644555e-53 | -8.615850e-47 |
| Msa1138030 | Msa1156210 | 0.807417 | 5.107476e-50 | -8.615850e-47 |
| Msa1138030 | Msa1157680 | 0.808176 | 3.521907e-50 | -8.615850e-47 |
| Msa1138030 | Msa1177960 | 0.807375 | 5.212774e-50 | -8.615850e-47 |
| Msa1138030 | Msa1183610 | 0.804071 | 2.575348e-49 | -8.615850e-47 |
| Msa1138030 | Msa1189630 | 0.818664 | 1.742367e-52 | -8.615850e-47 |
| Msa1138030 | Msa1190300 | 0.820611 | 6.261275e-53 | -8.615850e-47 |
| Msa1138030 | Msa1190320 | 0.813517 | 2.459209e-51 | -8.615850e-47 |
| Msa1138030 | Msa1196910 | 0.806667 | 7.358106e-50 | -8.615850e-47 |
| Msa1138030 | Msa1198420 | 0.805291 | 1.432827e-49 | -8.615850e-47 |
| Msa1138030 | Msa1208750 | 0.801006 | 1.103751e-48 | -8.615850e-47 |
| Msa1138030 | Msa1228950 | 0.830907 | 2.254777e-55 | -8.615850e-47 |
| Msa1138030 | Msa1244770 | 0.811821 | 5.780014e-51 | -8.615850e-47 |
| Msa1138030 | Msa1264670 | 0.800163 | 1.639296e-48 | -8.615850e-47 |
| Msa1138030 | Msa1317380 | 0.812652 | 3.806523e-51 | -8.615850e-47 |
| Msa1138030 | Msa1324940 | 0.806772 | 6.993015e-50 | -8.615850e-47 |
| Msa1138030 | Msa1336320 | 0.801689 | 7.995985e-49 | -8.615850e-47 |
| Msa1138030 | Msa1367810 | 0.805252 | 1.460135e-49 | -8.615850e-47 |
| Msa1138030 | Msa1393200 | 0.827933 | 1.189901e-54 | -8.615850e-47 |
| Msa1138030 | Msa1398740 | 0.810320 | 1.222538e-50 | -8.615850e-47 |
| Msa1138030 | Msa1410360 | 0.806287 | 8.852583e-50 | -8.615850e-47 |
| Msa1138030 | Msa1412750 | 0.812758 | 3.608912e-51 | -8.615850e-47 |
| Msa1138030 | Msa1415250 | 0.807489 | 4.929063e-50 | -8.615850e-47 |
| Msa1138030 | Msa1429390 | 0.807166 | 5.772668e-50 | -8.615850e-47 |
| Msa1138030 | Msa1439800 | 0.814048 | 1.878437e-51 | -8.615850e-47 |
| Msa1138030 | Msa1442030 | 0.811833 | 5.743638e-51 | -8.615850e-47 |
| Msa1138030 | Msa1444750 | 0.812406 | 4.307376e-51 | -8.615850e-47 |
| Msa1138030 | Msa1460650 | 0.823556 | 1.299815e-53 | -8.615850e-47 |
| Msa0486200 | Msa1138030 | 0.825777 | 3.896147e-54 | -8.615850e-47 |
| Msa0539900 | Msa1138030 | 0.809473 | 1.859803e-50 | -8.615850e-47 |
| Msa0544780 | Msa1138030 | 0.801909 | 7.206666e-49 | -8.615850e-47 |
| Msa0577110 | Msa1138030 | 0.814069 | 1.858741e-51 | -8.615850e-47 |
| Msa0600390 | Msa1138030 | 0.808016 | 3.809559e-50 | -8.615850e-47 |
| Msa0842660 | Msa1138030 | 0.803780 | 2.961155e-49 | -8.615850e-47 |
| Msa0910650 | Msa1138030 | 0.817018 | 4.097955e-52 | -8.615850e-47 |
| Msa0926860 | Msa1138030 | 0.828695 | 7.791885e-55 | -8.615850e-47 |
| Msa0927830 | Msa1138030 | 0.807844 | 4.144375e-50 | -8.615850e-47 |
| Msa0929820 | Msa1138030 | 0.812162 | 4.870860e-51 | -8.615850e-47 |
| Msa0946650 | Msa1138030 | 0.803886 | 2.813659e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138030 | MtrunA17_Chr7g0220151 | 97.531 | 324 | 8 | 0 | 1 | 324 | 1 | 324 | 0.0 | 656 |
| Msa1138030 | MtrunA17_Chr5g0399371 | 74.013 | 304 | 79 | 0 | 21 | 324 | 46 | 349 | 3.52e-173 | 484 |
| Msa1138030 | MtrunA17_Chr1g0146321 | 25.628 | 199 | 135 | 3 | 126 | 314 | 91 | 286 | 1.04e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1138030 | AT5G47435.1 | 77.931 | 290 | 64 | 0 | 35 | 324 | 34 | 323 | 4.53e-177 | 493 |
| Msa1138030 | AT5G47435.2 | 77.931 | 290 | 64 | 0 | 35 | 324 | 34 | 323 | 4.53e-177 | 493 |
| Msa1138030 | AT4G17360.1 | 71.646 | 328 | 86 | 2 | 4 | 324 | 1 | 328 | 2.27e-174 | 486 |
| Msa1138030 | AT4G17360.2 | 67.589 | 253 | 75 | 2 | 4 | 249 | 1 | 253 | 1.17e-122 | 352 |
| Msa1138030 | AT4G17360.3 | 67.123 | 219 | 65 | 2 | 4 | 215 | 1 | 219 | 1.86e-102 | 300 |
| Msa1138030 | AT1G31220.1 | 25.126 | 199 | 135 | 4 | 126 | 313 | 77 | 272 | 1.81e-15 | 75.9 |
Find 102 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATGTACACAAATGAATT+TGG | 0.169104 | 7_4:+7222257 | Msa1138030:three_prime_UTR |
| TTCACCATTTGTTCAATTAT+TGG | 0.175038 | 7_4:-7220966 | None:intergenic |
| TAACATGAGGATTATATATT+AGG | 0.200946 | 7_4:-7222559 | None:intergenic |
| GAGGCTGGTGTGAAATTAAT+TGG | 0.276061 | 7_4:+7220903 | Msa1138030:CDS |
| TTGTTGCAGCTAACATAAAA+TGG | 0.277800 | 7_4:-7222330 | None:intergenic |
| TGTCGTGAGGGTGCCGGCTC+TGG | 0.286577 | 7_4:+7219497 | Msa1138030:CDS |
| TGGATATCACCTGTGTAATT+AGG | 0.289026 | 7_4:+7219893 | Msa1138030:CDS |
| TAATGTACACAAATGAATTT+GGG | 0.291824 | 7_4:+7222258 | Msa1138030:three_prime_UTR |
| TAAAAGAGAAGGGGAGATAT+TGG | 0.293953 | 7_4:+7220110 | Msa1138030:CDS |
| TAAATATAAAATAGCTGTTC+TGG | 0.311791 | 7_4:+7219524 | Msa1138030:CDS |
| TGAATGCCTGGGAAAGCTTT+AGG | 0.320422 | 7_4:-7219461 | None:intergenic |
| GTAGCTCCGTATAAAGTTTC+CGG | 0.323146 | 7_4:-7220676 | None:intergenic |
| TTATATGTAAAGATACTTTC+CGG | 0.343633 | 7_4:+7220657 | Msa1138030:intron |
| TACTTTCCGGAAACTTTATA+CGG | 0.353184 | 7_4:+7220670 | Msa1138030:CDS |
| TGTATCCGTGGCCATTTAAC+AGG | 0.358909 | 7_4:-7219423 | None:intergenic |
| TCATTTGTGTACATTATGTT+TGG | 0.361509 | 7_4:-7222251 | None:intergenic |
| AGAACTTAACTTCATTCGTT+TGG | 0.374317 | 7_4:+7222364 | Msa1138030:three_prime_UTR |
| ACAGTCTTCTTTACCTCATA+AGG | 0.386943 | 7_4:-7222202 | None:intergenic |
| TAGATCCTATTGTGAACTTC+GGG | 0.387384 | 7_4:+7222174 | Msa1138030:CDS |
| GGTGACCTGGGTTCGAACTA+TGG | 0.391286 | 7_4:-7222417 | None:intergenic |
| TTCGTTTGGTTCTTATCGTA+AGG | 0.394008 | 7_4:+7222378 | Msa1138030:three_prime_UTR |
| TGTTGGTTAATCCCAATACT+TGG | 0.405487 | 7_4:-7217913 | None:intergenic |
| AGACAGAGATAGAGAGAGAA+TGG | 0.412206 | 7_4:+7217868 | Msa1138030:exon |
| GTCGTGCTTAAATAATGATA+TGG | 0.419817 | 7_4:-7220078 | None:intergenic |
| TGGTTTGTTGCCATCATTCA+AGG | 0.421574 | 7_4:+7220725 | Msa1138030:CDS |
| CGAACACCAACCTGTTTAGA+TGG | 0.427832 | 7_4:-7220756 | None:intergenic |
| GTTTCTGATCTTGTTGCTGT+TGG | 0.432337 | 7_4:-7217930 | None:intergenic |
| TTTGCTGCAGGATCACTGCC+TGG | 0.435903 | 7_4:+7219831 | Msa1138030:intron |
| ATCTTGTTGCATTGAATGCC+TGG | 0.441748 | 7_4:-7219473 | None:intergenic |
| GGGTGGTCATCCATCTAAAC+AGG | 0.442035 | 7_4:+7220746 | Msa1138030:CDS |
| AGAAGAGTATCCCAAGTATT+GGG | 0.442409 | 7_4:+7217902 | Msa1138030:CDS |
| CGGACCAATAATTGAACAAA+TGG | 0.444593 | 7_4:+7220962 | Msa1138030:CDS |
| TGGTAGATCTATTGATTTGA+AGG | 0.453173 | 7_4:-7217957 | None:intergenic |
| TAATACCCGAAGTTCACAAT+AGG | 0.456580 | 7_4:-7222179 | None:intergenic |
| ACTTCGGGTATTACCTTATG+AGG | 0.458749 | 7_4:+7222189 | Msa1138030:CDS |
| TCGAGTATTTGTTGGCCACT+AGG | 0.461302 | 7_4:+7222476 | Msa1138030:three_prime_UTR |
| GTGTTTATTCGAGTATTTGT+TGG | 0.470081 | 7_4:+7222468 | Msa1138030:three_prime_UTR |
| ATCGTAAGGGCATTGTATGT+CGG | 0.472018 | 7_4:+7222392 | Msa1138030:three_prime_UTR |
| AAGAAGAGTATCCCAAGTAT+TGG | 0.477475 | 7_4:+7217901 | Msa1138030:CDS |
| CAAACGAAAATAAAAGAGAA+GGG | 0.480930 | 7_4:+7220100 | Msa1138030:CDS |
| TGCCTGGTTGATTTATTACA+TGG | 0.487484 | 7_4:+7219847 | Msa1138030:CDS |
| TGAGGATTATATATTAGGCT+TGG | 0.489355 | 7_4:-7222554 | None:intergenic |
| TCGTAAGGGCATTGTATGTC+GGG | 0.490267 | 7_4:+7222393 | Msa1138030:three_prime_UTR |
| AGTACTTGCAAGATATATGC+AGG | 0.491599 | 7_4:+7220158 | Msa1138030:CDS |
| ACAATAGGATCTAATAGCCT+TGG | 0.491868 | 7_4:-7222164 | None:intergenic |
| TTAGATCCTATTGTGAACTT+CGG | 0.497060 | 7_4:+7222173 | Msa1138030:CDS |
| TGATTTATTACATGGATGGC+AGG | 0.506471 | 7_4:+7219855 | Msa1138030:CDS |
| AGCTGTTCTGGCATCAAAGC+AGG | 0.509131 | 7_4:+7219536 | Msa1138030:CDS |
| GAAAGGGAAATGTGGTGACC+TGG | 0.512870 | 7_4:-7222430 | None:intergenic |
| AATGAAAGACGTGGATTCCA+TGG | 0.513588 | 7_4:-7218003 | None:intergenic |
| CTGAGTGATGGTGATGGTAA+TGG | 0.518245 | 7_4:-7217980 | None:intergenic |
| GACAGAGATAGAGAGAGAAT+GGG | 0.519538 | 7_4:+7217869 | Msa1138030:exon |
| TGGAAAGACATTGTTTCTCA+AGG | 0.521459 | 7_4:-7222144 | None:intergenic |
| TCGTTTGGTTCTTATCGTAA+GGG | 0.532073 | 7_4:+7222379 | Msa1138030:three_prime_UTR |
| GGTTTGTTGCCATCATTCAA+GGG | 0.536094 | 7_4:+7220726 | Msa1138030:CDS |
| GGATTTCCTAAAGCTTTCCC+AGG | 0.536655 | 7_4:+7219455 | Msa1138030:CDS |
| AAGATCTGTCGTGAGGGTGC+CGG | 0.545755 | 7_4:+7219491 | Msa1138030:CDS |
| TTGATCCTGTTAAATGGCCA+CGG | 0.549392 | 7_4:+7219418 | Msa1138030:CDS |
| ACAAACGAAAATAAAAGAGA+AGG | 0.549972 | 7_4:+7220099 | Msa1138030:CDS |
| TGATGGTAATAGGATGCTGT+TGG | 0.554714 | 7_4:+7218183 | Msa1138030:intron |
| GCAGGATGGAAAACTTCCAC+TGG | 0.561973 | 7_4:+7219873 | Msa1138030:CDS |
| GGAAACTTTATACGGAGCTA+CGG | 0.562360 | 7_4:+7220678 | Msa1138030:CDS |
| GTTGGTTAATCCCAATACTT+GGG | 0.570219 | 7_4:-7217912 | None:intergenic |
| TGAGAAACAATGTCTTTCCA+AGG | 0.572364 | 7_4:+7222147 | Msa1138030:CDS |
| GAAACTTTATACGGAGCTAC+GGG | 0.574197 | 7_4:+7220679 | Msa1138030:CDS |
| AAACGAAAATAAAAGAGAAG+GGG | 0.577193 | 7_4:+7220101 | Msa1138030:CDS |
| TTATTACATGGATGGCAGGA+TGG | 0.577923 | 7_4:+7219859 | Msa1138030:CDS |
| CTAAAATTACATTTAACATG+AGG | 0.578119 | 7_4:-7222572 | None:intergenic |
| TTGGAGAAGCACACAGTGCA+TGG | 0.580070 | 7_4:-7222535 | None:intergenic |
| GAATGTATTGCTTCTAGAGG+TGG | 0.580534 | 7_4:+7218225 | Msa1138030:CDS |
| TGGAGTTAAATAACTTCATG+TGG | 0.581950 | 7_4:+7217842 | None:intergenic |
| AAAGGGAAATGTGGTGACCT+GGG | 0.582465 | 7_4:-7222429 | None:intergenic |
| TGGTTGATTTATTACATGGA+TGG | 0.584316 | 7_4:+7219851 | Msa1138030:CDS |
| TCCTCCTCCATCTGTATCCG+TGG | 0.584781 | 7_4:-7219435 | None:intergenic |
| TAGAGAGAGAATGGGCATGG+TGG | 0.585751 | 7_4:+7217877 | Msa1138030:exon |
| TCTGAATGTATTGCTTCTAG+AGG | 0.589573 | 7_4:+7218222 | Msa1138030:CDS |
| GAAATTTCACCTAATTACAC+AGG | 0.594096 | 7_4:-7219902 | None:intergenic |
| TTGTTGCCATCATTCAAGGG+TGG | 0.596482 | 7_4:+7220729 | Msa1138030:CDS |
| AGATAGAGAGAGAATGGGCA+TGG | 0.601653 | 7_4:+7217874 | Msa1138030:exon |
| GACATAATTAACATTCACCA+TGG | 0.604754 | 7_4:+7220705 | Msa1138030:CDS |
| AGTGATGGTGATGGTAATGG+TGG | 0.604759 | 7_4:-7217977 | None:intergenic |
| GGATGACCACCCTTGAATGA+TGG | 0.607929 | 7_4:-7220735 | None:intergenic |
| TCTTGTTGCATTGAATGCCT+GGG | 0.613540 | 7_4:-7219472 | None:intergenic |
| TGCAACAAGATCTGTCGTGA+GGG | 0.615842 | 7_4:+7219485 | Msa1138030:CDS |
| CCATCACCATCACTCAGCCA+TGG | 0.619563 | 7_4:+7217986 | Msa1138030:CDS |
| TTATATTTAGGATCCAGAGC+CGG | 0.620524 | 7_4:-7219510 | None:intergenic |
| TGGATTCCATGGCTGAGTGA+TGG | 0.622773 | 7_4:-7217992 | None:intergenic |
| GCCACGGATACAGATGGAGG+AGG | 0.625892 | 7_4:+7219434 | Msa1138030:CDS |
| CACACACAGAAAGGGAAATG+TGG | 0.631979 | 7_4:-7222438 | None:intergenic |
| ATGCAACAAGATCTGTCGTG+AGG | 0.646975 | 7_4:+7219484 | Msa1138030:CDS |
| ATTACACAGGTGATATCCAG+TGG | 0.647408 | 7_4:-7219889 | None:intergenic |
| TAAATGGCCACGGATACAGA+TGG | 0.659066 | 7_4:+7219428 | Msa1138030:CDS |
| CGGGTCCATAGTTCGAACCC+AGG | 0.660609 | 7_4:+7222412 | Msa1138030:three_prime_UTR |
| TTTCCAGAAAACGAATCACG+TGG | 0.670975 | 7_4:-7220044 | None:intergenic |
| AATGTACACAAATGAATTTG+GGG | 0.672002 | 7_4:+7222259 | Msa1138030:three_prime_UTR |
| TGAATGATGGCAACAAACCA+TGG | 0.673075 | 7_4:-7220722 | None:intergenic |
| ATCCATGTAATAAATCAACC+AGG | 0.690814 | 7_4:-7219849 | None:intergenic |
| CCATGGCTGAGTGATGGTGA+TGG | 0.693909 | 7_4:-7217986 | None:intergenic |
| ATGGCCACGGATACAGATGG+AGG | 0.701596 | 7_4:+7219431 | Msa1138030:CDS |
| TTACAGGGCAATGAAAGACG+TGG | 0.708500 | 7_4:-7218012 | None:intergenic |
| TTCCAGAAAACGAATCACGT+GGG | 0.721846 | 7_4:-7220043 | None:intergenic |
| GTGAGCGAAGAACTTGACAG+CGG | 0.735138 | 7_4:+7220942 | Msa1138030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAATTATATTATTTAAAG+TGG | + | chr7_4:7221097-7221116 | Msa1138030:intron | 10.0% |
| !!! | TGATTCTTAATTTTTATTTT+TGG | - | chr7_4:7222509-7222528 | None:intergenic | 10.0% |
| !! | TAAAACAATATTAAACAATC+AGG | - | chr7_4:7219694-7219713 | None:intergenic | 15.0% |
| !! | TTGAACTTATTCTTAATATT+TGG | + | chr7_4:7220262-7220281 | Msa1138030:intron | 15.0% |
| !!! | TTATACAAATAATTAGTTCT+CGG | - | chr7_4:7220509-7220528 | None:intergenic | 15.0% |
| !!! | ATTTTTCTTAAGCAAAAATT+GGG | + | chr7_4:7221068-7221087 | Msa1138030:intron | 15.0% |
| !!! | TAATTTTTATTTTTGGCTAT+TGG | - | chr7_4:7222502-7222521 | None:intergenic | 15.0% |
| !! | AAAAAAGAATGAACAAAAGA+AGG | - | chr7_4:7218314-7218333 | None:intergenic | 20.0% |
| !!! | TTATATGAAACTAACTTTTC+AGG | + | chr7_4:7218557-7218576 | Msa1138030:intron | 20.0% |
| !!! | ACATGTTTATTAGTTGTTTT+CGG | + | chr7_4:7218747-7218766 | Msa1138030:intron | 20.0% |
| !!! | TAAGCTATTTCTATAACAAA+AGG | - | chr7_4:7218857-7218876 | None:intergenic | 20.0% |
| !! | TAACAAAAAAACGTTTGTAT+CGG | - | chr7_4:7219065-7219084 | None:intergenic | 20.0% |
| !!! | AGAACAGCTATTTTATATTT+AGG | - | chr7_4:7219525-7219544 | None:intergenic | 20.0% |
| !! | TAAATATAAAATAGCTGTTC+TGG | + | chr7_4:7219524-7219543 | Msa1138030:CDS | 20.0% |
| !! | AACACCAATAAATGAATTTA+TGG | + | chr7_4:7219931-7219950 | Msa1138030:intron | 20.0% |
| !!! | CTTAATATTTGGATGATTTT+TGG | + | chr7_4:7220273-7220292 | Msa1138030:intron | 20.0% |
| !! | TTATATGTAAAGATACTTTC+CGG | + | chr7_4:7220657-7220676 | Msa1138030:intron | 20.0% |
| !!! | ATTTTTCTATACATGTTTCA+TGG | + | chr7_4:7220994-7221013 | Msa1138030:intron | 20.0% |
| !!! | GATTTTTCTTAAGCAAAAAT+TGG | + | chr7_4:7221067-7221086 | Msa1138030:intron | 20.0% |
| !! | TATATATTCCTAATATGCTA+AGG | - | chr7_4:7221221-7221240 | None:intergenic | 20.0% |
| !! | ATAATGTACACAAATGAATT+TGG | + | chr7_4:7222257-7222276 | Msa1138030:three_prime_UTR | 20.0% |
| !! | TAATGTACACAAATGAATTT+GGG | + | chr7_4:7222258-7222277 | Msa1138030:three_prime_UTR | 20.0% |
| !! | TAACATGAGGATTATATATT+AGG | - | chr7_4:7222562-7222581 | None:intergenic | 20.0% |
| !! | CTAAAATTACATTTAACATG+AGG | - | chr7_4:7222575-7222594 | None:intergenic | 20.0% |
| ! | ATTTCCAATAGAAAAAAGCA+TGG | - | chr7_4:7218062-7218081 | None:intergenic | 25.0% |
| ! | TTTCTATTGGAAATTCGTAA+AGG | + | chr7_4:7218068-7218087 | Msa1138030:intron | 25.0% |
| ! | CCAATTTCAAACTCAATAAA+GGG | - | chr7_4:7218110-7218129 | None:intergenic | 25.0% |
| !! | CCTTTATTGAGTTTGAAATT+GGG | + | chr7_4:7218108-7218127 | Msa1138030:intron | 25.0% |
| !!! | GTTTGTTTGGTTTTTTGAAA+TGG | + | chr7_4:7218130-7218149 | Msa1138030:intron | 25.0% |
| !! | GAGATTGAATTTGTGTTTTT+GGG | + | chr7_4:7218152-7218171 | Msa1138030:intron | 25.0% |
| !!! | CTTATTTTCATTAGTTTTCC+AGG | + | chr7_4:7218770-7218789 | Msa1138030:intron | 25.0% |
| !! | ACCTATAGCTTTTATGAAAA+CGG | + | chr7_4:7218816-7218835 | Msa1138030:intron | 25.0% |
| !!! | TCAGATTAAAAGTACTAAAG+AGG | - | chr7_4:7218937-7218956 | None:intergenic | 25.0% |
| !!! | TCTTTCTTTTAACTATGCAT+TGG | - | chr7_4:7219279-7219298 | None:intergenic | 25.0% |
| !!! | TTGTTTTTGATCCTGTTAAA+TGG | + | chr7_4:7219412-7219431 | Msa1138030:CDS | 25.0% |
| ! | TCAACAAATATCTATCTACA+TGG | - | chr7_4:7219799-7219818 | None:intergenic | 25.0% |
| ! | AGAGCCATAAATTCATTTAT+TGG | - | chr7_4:7219938-7219957 | None:intergenic | 25.0% |
| ! | ACAAACGAAAATAAAAGAGA+AGG | + | chr7_4:7220099-7220118 | Msa1138030:CDS | 25.0% |
| ! | CAAACGAAAATAAAAGAGAA+GGG | + | chr7_4:7220100-7220119 | Msa1138030:CDS | 25.0% |
| ! | AAACGAAAATAAAAGAGAAG+GGG | + | chr7_4:7220101-7220120 | Msa1138030:CDS | 25.0% |
| ! | ATAGACTAAATTAGAGATAG+TGG | - | chr7_4:7220388-7220407 | None:intergenic | 25.0% |
| ! | ACTATCTCTAATTTAGTCTA+TGG | + | chr7_4:7220387-7220406 | Msa1138030:intron | 25.0% |
| !!! | ATACTTTAGGACTAACATAA+TGG | - | chr7_4:7220454-7220473 | None:intergenic | 25.0% |
| ! | TCATTCATACTTAACATCAT+TGG | + | chr7_4:7220633-7220652 | Msa1138030:intron | 25.0% |
| ! | ACATGTAGACAAATGTTAAA+AGG | - | chr7_4:7220852-7220871 | None:intergenic | 25.0% |
| !!! | ATATGTTGTATTGTTTTGTC+AGG | + | chr7_4:7220875-7220894 | Msa1138030:intron | 25.0% |
| ! | TTCACCATTTGTTCAATTAT+TGG | - | chr7_4:7220969-7220988 | None:intergenic | 25.0% |
| !!! | TGTTGATTTGAATTGATCAT+AGG | + | chr7_4:7221186-7221205 | Msa1138030:intron | 25.0% |
| ! | GATATATACCTTAGCATATT+AGG | + | chr7_4:7221210-7221229 | Msa1138030:intron | 25.0% |
| !! | TAGGACTCAAAATCTATTTT+TGG | - | chr7_4:7221302-7221321 | None:intergenic | 25.0% |
| ! | CATTCTATCTTAATCTGTAT+AGG | - | chr7_4:7221479-7221498 | None:intergenic | 25.0% |
| ! | CTATAGCTTATAAGATATCA+TGG | - | chr7_4:7221887-7221906 | None:intergenic | 25.0% |
| ! | TCATTTGTGTACATTATGTT+TGG | - | chr7_4:7222254-7222273 | None:intergenic | 25.0% |
| ! | AATGTACACAAATGAATTTG+GGG | + | chr7_4:7222259-7222278 | Msa1138030:three_prime_UTR | 25.0% |
| !! | TGGTAGATCTATTGATTTGA+AGG | - | chr7_4:7217960-7217979 | None:intergenic | 30.0% |
| !!! | CATTCCATGCTTTTTTCTAT+TGG | + | chr7_4:7218055-7218074 | Msa1138030:intron | 30.0% |
| ATTGGAAATTCGTAAAGGAA+TGG | + | chr7_4:7218073-7218092 | Msa1138030:intron | 30.0% | |
| ! | CCCTTTATTGAGTTTGAAAT+TGG | + | chr7_4:7218107-7218126 | Msa1138030:intron | 30.0% |
| CCCAATTTCAAACTCAATAA+AGG | - | chr7_4:7218111-7218130 | None:intergenic | 30.0% | |
| ! | AGTTTGAAATTGGGTTTGTT+TGG | + | chr7_4:7218117-7218136 | Msa1138030:intron | 30.0% |
| ! | GGAGATTGAATTTGTGTTTT+TGG | + | chr7_4:7218151-7218170 | Msa1138030:intron | 30.0% |
| !!! | ATTGAATTTGTGTTTTTGGG+TGG | + | chr7_4:7218155-7218174 | Msa1138030:intron | 30.0% |
| TAAAAAACATGCTTGTTCTG+AGG | - | chr7_4:7218279-7218298 | None:intergenic | 30.0% | |
| !!! | AGCATGTTTTTTACTCTAGA+AGG | + | chr7_4:7218286-7218305 | Msa1138030:CDS | 30.0% |
| AATGTTGTCTTCTTTCTTGT+TGG | + | chr7_4:7218363-7218382 | Msa1138030:intron | 30.0% | |
| ATGTTGTCTTCTTTCTTGTT+GGG | + | chr7_4:7218364-7218383 | Msa1138030:intron | 30.0% | |
| CAACTATCTTGAATAGCTTA+CGG | - | chr7_4:7218500-7218519 | None:intergenic | 30.0% | |
| ACGATAAGCAAATGTCAATT+AGG | + | chr7_4:7218640-7218659 | Msa1138030:intron | 30.0% | |
| CGATAAGCAAATGTCAATTA+GGG | + | chr7_4:7218641-7218660 | Msa1138030:intron | 30.0% | |
| ! | ACCGTTTTCATAAAAGCTAT+AGG | - | chr7_4:7218820-7218839 | None:intergenic | 30.0% |
| AACTTCCAAGAAACACTTAT+GGG | - | chr7_4:7219162-7219181 | None:intergenic | 30.0% | |
| TAACTTCCAAGAAACACTTA+TGG | - | chr7_4:7219163-7219182 | None:intergenic | 30.0% | |
| TATATGTTTCCATGATTCCA+TGG | - | chr7_4:7219606-7219625 | None:intergenic | 30.0% | |
| ! | TAATATCATGCAGTCGATTT+CGG | - | chr7_4:7219757-7219776 | None:intergenic | 30.0% |
| ! | ATTATTCTTTCTTTTGCTGC+AGG | + | chr7_4:7219819-7219838 | Msa1138030:intron | 30.0% |
| ATCCATGTAATAAATCAACC+AGG | - | chr7_4:7219852-7219871 | None:intergenic | 30.0% | |
| ! | TGGTTGATTTATTACATGGA+TGG | + | chr7_4:7219851-7219870 | Msa1138030:CDS | 30.0% |
| GAAATTTCACCTAATTACAC+AGG | - | chr7_4:7219905-7219924 | None:intergenic | 30.0% | |
| GTCGTGCTTAAATAATGATA+TGG | - | chr7_4:7220081-7220100 | None:intergenic | 30.0% | |
| !! | TGGATGATTTTTGGAAGAAA+TGG | + | chr7_4:7220282-7220301 | Msa1138030:intron | 30.0% |
| ! | CAGATTTTCACAAGTCTTAA+AGG | - | chr7_4:7220326-7220345 | None:intergenic | 30.0% |
| GTAATTGAGGGACTAATTTA+TGG | - | chr7_4:7220366-7220385 | None:intergenic | 30.0% | |
| ! | TTAGAGATAGTGGTAATTGA+GGG | - | chr7_4:7220378-7220397 | None:intergenic | 30.0% |
| ! | ATTAGAGATAGTGGTAATTG+AGG | - | chr7_4:7220379-7220398 | None:intergenic | 30.0% |
| TACTTTCCGGAAACTTTATA+CGG | + | chr7_4:7220670-7220689 | Msa1138030:CDS | 30.0% | |
| GACATAATTAACATTCACCA+TGG | + | chr7_4:7220705-7220724 | Msa1138030:CDS | 30.0% | |
| ATCAGAAAGAGCAATAACAA+AGG | - | chr7_4:7220828-7220847 | None:intergenic | 30.0% | |
| TCATTCACATCTTATTGCTA+AGG | - | chr7_4:7221040-7221059 | None:intergenic | 30.0% | |
| CTTAAGCAAAAATTGGGAAA+AGG | + | chr7_4:7221074-7221093 | Msa1138030:intron | 30.0% | |
| CATCTTACAATTGTCTCAAA+GGG | + | chr7_4:7221130-7221149 | Msa1138030:intron | 30.0% | |
| ATCTTACAATTGTCTCAAAG+GGG | + | chr7_4:7221131-7221150 | Msa1138030:intron | 30.0% | |
| AACATTATCAATGTCCTGAA+GGG | - | chr7_4:7221170-7221189 | None:intergenic | 30.0% | |
| CTTGATATATCCTATTCGTA+GGG | + | chr7_4:7221787-7221806 | Msa1138030:intron | 30.0% | |
| CTGTCAAATAGTCTAAATTG+TGG | + | chr7_4:7222018-7222037 | Msa1138030:intron | 30.0% | |
| CTATTTATGTGAGGATAACA+TGG | + | chr7_4:7222048-7222067 | Msa1138030:intron | 30.0% | |
| TTAGATCCTATTGTGAACTT+CGG | + | chr7_4:7222173-7222192 | Msa1138030:CDS | 30.0% | |
| !! | GAAGACTGTTGTATTTTAAG+TGG | + | chr7_4:7222216-7222235 | Msa1138030:exon | 30.0% |
| TTGTTGCAGCTAACATAAAA+TGG | - | chr7_4:7222333-7222352 | None:intergenic | 30.0% | |
| AGAACTTAACTTCATTCGTT+TGG | + | chr7_4:7222364-7222383 | Msa1138030:three_prime_UTR | 30.0% | |
| GTGTTTATTCGAGTATTTGT+TGG | + | chr7_4:7222468-7222487 | Msa1138030:three_prime_UTR | 30.0% | |
| TGAGGATTATATATTAGGCT+TGG | - | chr7_4:7222557-7222576 | None:intergenic | 30.0% | |
| !! | AAGAAGAGTATCCCAAGTAT+TGG | + | chr7_4:7217901-7217920 | Msa1138030:CDS | 35.0% |
| !! | AGAAGAGTATCCCAAGTATT+GGG | + | chr7_4:7217902-7217921 | Msa1138030:CDS | 35.0% |
| GTTGGTTAATCCCAATACTT+GGG | - | chr7_4:7217915-7217934 | None:intergenic | 35.0% | |
| ! | TGTTGGTTAATCCCAATACT+TGG | - | chr7_4:7217916-7217935 | None:intergenic | 35.0% |
| GAATAAGTGAGTGACTTACA+GGG | - | chr7_4:7218030-7218049 | None:intergenic | 35.0% | |
| TGAATAAGTGAGTGACTTAC+AGG | - | chr7_4:7218031-7218050 | None:intergenic | 35.0% | |
| TCTGAATGTATTGCTTCTAG+AGG | + | chr7_4:7218222-7218241 | Msa1138030:CDS | 35.0% | |
| ! | CAACATTGATTGTGTTTGCA+TGG | - | chr7_4:7218350-7218369 | None:intergenic | 35.0% |
| ! | TGGGTTTCTAGACATTTCTT+AGG | + | chr7_4:7218383-7218402 | Msa1138030:intron | 35.0% |
| ! | GGGTTTCTAGACATTTCTTA+GGG | + | chr7_4:7218384-7218403 | Msa1138030:intron | 35.0% |
| ! | GGTTTCTAGACATTTCTTAG+GGG | + | chr7_4:7218385-7218404 | Msa1138030:intron | 35.0% |
| CCAAATAAGACAATCCAAAC+AGG | - | chr7_4:7218667-7218686 | None:intergenic | 35.0% | |
| ! | CCTGTTTGGATTGTCTTATT+TGG | + | chr7_4:7218664-7218683 | Msa1138030:intron | 35.0% |
| !! | TCACTTTTCATAAGCTATCC+TGG | - | chr7_4:7218791-7218810 | None:intergenic | 35.0% |
| GGTAACATTAAGGTCATCTT+TGG | - | chr7_4:7218907-7218926 | None:intergenic | 35.0% | |
| !! | TAAAAGTACTAAAGAGGCAG+AGG | - | chr7_4:7218931-7218950 | None:intergenic | 35.0% |
| GAAACACTTATGGGGAAAAA+TGG | - | chr7_4:7219153-7219172 | None:intergenic | 35.0% | |
| ! | TTTTCCCCATAAGTGTTTCT+TGG | + | chr7_4:7219154-7219173 | Msa1138030:intron | 35.0% |
| ACTTCCAAGAAACACTTATG+GGG | - | chr7_4:7219161-7219180 | None:intergenic | 35.0% | |
| CATTGAGATCAATTGGACAT+CGG | - | chr7_4:7219230-7219249 | None:intergenic | 35.0% | |
| ! | TTATATTTAGGATCCAGAGC+CGG | - | chr7_4:7219513-7219532 | None:intergenic | 35.0% |
| TACACAGTTGTTTACATCCA+TGG | + | chr7_4:7219586-7219605 | Msa1138030:intron | 35.0% | |
| TGTTTACATCCATGGAATCA+TGG | + | chr7_4:7219594-7219613 | Msa1138030:intron | 35.0% | |
| TTAGATCGGATGACATAGAT+CGG | - | chr7_4:7219662-7219681 | None:intergenic | 35.0% | |
| ! | TCAGGTCAACTGATTTAGAT+CGG | - | chr7_4:7219676-7219695 | None:intergenic | 35.0% |
| !! | GCCATTGATTCTAGATCAAA+CGG | - | chr7_4:7219735-7219754 | None:intergenic | 35.0% |
| ! | TGCCTGGTTGATTTATTACA+TGG | + | chr7_4:7219847-7219866 | Msa1138030:CDS | 35.0% |
| TGATTTATTACATGGATGGC+AGG | + | chr7_4:7219855-7219874 | Msa1138030:CDS | 35.0% | |
| TGGATATCACCTGTGTAATT+AGG | + | chr7_4:7219893-7219912 | Msa1138030:CDS | 35.0% | |
| TAAAAGAGAAGGGGAGATAT+TGG | + | chr7_4:7220110-7220129 | Msa1138030:CDS | 35.0% | |
| AGTACTTGCAAGATATATGC+AGG | + | chr7_4:7220158-7220177 | Msa1138030:CDS | 35.0% | |
| GACGAGTTCTCATATACTTT+AGG | - | chr7_4:7220467-7220486 | None:intergenic | 35.0% | |
| GATACTTGAGGACTAAATGA+TGG | + | chr7_4:7220557-7220576 | Msa1138030:intron | 35.0% | |
| !! | ATTGTTTTGTCAGGCTTTTG+AGG | + | chr7_4:7220884-7220903 | Msa1138030:intron | 35.0% |
| CGGACCAATAATTGAACAAA+TGG | + | chr7_4:7220962-7220981 | Msa1138030:CDS | 35.0% | |
| ATCTTATTGCTAAGGAAGCA+AGG | - | chr7_4:7221032-7221051 | None:intergenic | 35.0% | |
| GCATCTTACAATTGTCTCAA+AGG | + | chr7_4:7221129-7221148 | Msa1138030:intron | 35.0% | |
| ACATTATCAATGTCCTGAAG+GGG | - | chr7_4:7221169-7221188 | None:intergenic | 35.0% | |
| CAACATTATCAATGTCCTGA+AGG | - | chr7_4:7221171-7221190 | None:intergenic | 35.0% | |
| AGAAGAACCTATGCATACTA+GGG | - | chr7_4:7221524-7221543 | None:intergenic | 35.0% | |
| TAAGGGATAATGCAAATGAG+AGG | + | chr7_4:7221629-7221648 | Msa1138030:intron | 35.0% | |
| !! | ACTTTTGTTTGATGTGTTGC+TGG | + | chr7_4:7221726-7221745 | Msa1138030:intron | 35.0% |
| ATCAAGCATTTGCACAATAC+AGG | - | chr7_4:7221773-7221792 | None:intergenic | 35.0% | |
| GCTTGATATATCCTATTCGT+AGG | + | chr7_4:7221786-7221805 | Msa1138030:intron | 35.0% | |
| AAGATATCATGGAGAACTTG+TGG | - | chr7_4:7221876-7221895 | None:intergenic | 35.0% | |
| GGCTTGATACTATTTATGTG+AGG | + | chr7_4:7222039-7222058 | Msa1138030:intron | 35.0% | |
| ! | TGGAAAGACATTGTTTCTCA+AGG | - | chr7_4:7222147-7222166 | None:intergenic | 35.0% |
| TGAGAAACAATGTCTTTCCA+AGG | + | chr7_4:7222147-7222166 | Msa1138030:CDS | 35.0% | |
| ACAATAGGATCTAATAGCCT+TGG | - | chr7_4:7222167-7222186 | None:intergenic | 35.0% | |
| TAGATCCTATTGTGAACTTC+GGG | + | chr7_4:7222174-7222193 | Msa1138030:CDS | 35.0% | |
| TAATACCCGAAGTTCACAAT+AGG | - | chr7_4:7222182-7222201 | None:intergenic | 35.0% | |
| ACAGTCTTCTTTACCTCATA+AGG | - | chr7_4:7222205-7222224 | None:intergenic | 35.0% | |
| !! | TTCGTTTGGTTCTTATCGTA+AGG | + | chr7_4:7222378-7222397 | Msa1138030:three_prime_UTR | 35.0% |
| !! | TCGTTTGGTTCTTATCGTAA+GGG | + | chr7_4:7222379-7222398 | Msa1138030:three_prime_UTR | 35.0% |
| AGACAGAGATAGAGAGAGAA+TGG | + | chr7_4:7217868-7217887 | Msa1138030:exon | 40.0% | |
| GACAGAGATAGAGAGAGAAT+GGG | + | chr7_4:7217869-7217888 | Msa1138030:exon | 40.0% | |
| GTTTCTGATCTTGTTGCTGT+TGG | - | chr7_4:7217933-7217952 | None:intergenic | 40.0% | |
| AATGAAAGACGTGGATTCCA+TGG | - | chr7_4:7218006-7218025 | None:intergenic | 40.0% | |
| !!! | GTTTTTGGGTGGTTTTGTGA+TGG | + | chr7_4:7218166-7218185 | Msa1138030:intron | 40.0% |
| !!! | GGTGGTTTTGTGATGGTAAT+AGG | + | chr7_4:7218173-7218192 | Msa1138030:intron | 40.0% |
| TGATGGTAATAGGATGCTGT+TGG | + | chr7_4:7218183-7218202 | Msa1138030:intron | 40.0% | |
| ! | GAATGTATTGCTTCTAGAGG+TGG | + | chr7_4:7218225-7218244 | Msa1138030:CDS | 40.0% |
| AATGTCAATTAGGGCCTGTT+TGG | + | chr7_4:7218650-7218669 | Msa1138030:intron | 40.0% | |
| CTGCTAAGAACGATCTCTAA+GGG | - | chr7_4:7218971-7218990 | None:intergenic | 40.0% | |
| GCACTCACATTGAGATCAAT+TGG | - | chr7_4:7219237-7219256 | None:intergenic | 40.0% | |
| !! | AATCGCTTACTACTTTTCCC+TGG | - | chr7_4:7219324-7219343 | None:intergenic | 40.0% |
| TTGATCCTGTTAAATGGCCA+CGG | + | chr7_4:7219418-7219437 | Msa1138030:CDS | 40.0% | |
| TCTTGTTGCATTGAATGCCT+GGG | - | chr7_4:7219475-7219494 | None:intergenic | 40.0% | |
| ATCTTGTTGCATTGAATGCC+TGG | - | chr7_4:7219476-7219495 | None:intergenic | 40.0% | |
| ! | GCCGTTTGATCTAGAATCAA+TGG | + | chr7_4:7219731-7219750 | Msa1138030:intron | 40.0% |
| TTATTACATGGATGGCAGGA+TGG | + | chr7_4:7219859-7219878 | Msa1138030:CDS | 40.0% | |
| ATTACACAGGTGATATCCAG+TGG | - | chr7_4:7219892-7219911 | None:intergenic | 40.0% | |
| TTCCAGAAAACGAATCACGT+GGG | - | chr7_4:7220046-7220065 | None:intergenic | 40.0% | |
| TTTCCAGAAAACGAATCACG+TGG | - | chr7_4:7220047-7220066 | None:intergenic | 40.0% | |
| !! | ACGTGATTCGTTTTCTGGAA+AGG | + | chr7_4:7220046-7220065 | Msa1138030:CDS | 40.0% |
| !! | ATTCGTTTTCTGGAAAGGCA+TGG | + | chr7_4:7220051-7220070 | Msa1138030:CDS | 40.0% |
| TGTAGAGAGAGTGATACTTG+AGG | + | chr7_4:7220545-7220564 | Msa1138030:intron | 40.0% | |
| GTAGCTCCGTATAAAGTTTC+CGG | - | chr7_4:7220679-7220698 | None:intergenic | 40.0% | |
| GGAAACTTTATACGGAGCTA+CGG | + | chr7_4:7220678-7220697 | Msa1138030:CDS | 40.0% | |
| GAAACTTTATACGGAGCTAC+GGG | + | chr7_4:7220679-7220698 | Msa1138030:CDS | 40.0% | |
| TGAATGATGGCAACAAACCA+TGG | - | chr7_4:7220725-7220744 | None:intergenic | 40.0% | |
| !! | TGGTTTGTTGCCATCATTCA+AGG | + | chr7_4:7220725-7220744 | Msa1138030:CDS | 40.0% |
| !! | GGTTTGTTGCCATCATTCAA+GGG | + | chr7_4:7220726-7220745 | Msa1138030:CDS | 40.0% |
| GAGGCTGGTGTGAAATTAAT+TGG | + | chr7_4:7220903-7220922 | Msa1138030:CDS | 40.0% | |
| !!! | CTATTTTTGGATGCTTGCAC+TGG | - | chr7_4:7221289-7221308 | None:intergenic | 40.0% |
| CAATTGAACCTAAGACCTTG+AGG | - | chr7_4:7221383-7221402 | None:intergenic | 40.0% | |
| GTCTTAGGTTCAATTGTCTC+AGG | + | chr7_4:7221387-7221406 | Msa1138030:intron | 40.0% | |
| AATTGTCTCAGGTGCCAATT+TGG | + | chr7_4:7221398-7221417 | Msa1138030:intron | 40.0% | |
| ATTGTCTCAGGTGCCAATTT+GGG | + | chr7_4:7221399-7221418 | Msa1138030:intron | 40.0% | |
| GAGAAGAACCTATGCATACT+AGG | - | chr7_4:7221525-7221544 | None:intergenic | 40.0% | |
| GGTTGTATGTCAACTATGGT+GGG | - | chr7_4:7221575-7221594 | None:intergenic | 40.0% | |
| ACCATATATAAGTCGCTAGG+CGG | - | chr7_4:7221596-7221615 | None:intergenic | 40.0% | |
| CCTAGCGACTTATATATGGT+GGG | + | chr7_4:7221596-7221615 | Msa1138030:intron | 40.0% | |
| !! | TATATATGGTGGGTTGCATG+AGG | + | chr7_4:7221606-7221625 | Msa1138030:intron | 40.0% |
| ACTTCGGGTATTACCTTATG+AGG | + | chr7_4:7222189-7222208 | Msa1138030:CDS | 40.0% | |
| !! | ATCGTAAGGGCATTGTATGT+CGG | + | chr7_4:7222392-7222411 | Msa1138030:three_prime_UTR | 40.0% |
| !!! | ATTTTTGGCTATTGGCCTAG+TGG | - | chr7_4:7222494-7222513 | None:intergenic | 40.0% |
| AGATAGAGAGAGAATGGGCA+TGG | + | chr7_4:7217874-7217893 | Msa1138030:exon | 45.0% | |
| !! | AGTGATGGTGATGGTAATGG+TGG | - | chr7_4:7217980-7217999 | None:intergenic | 45.0% |
| !! | CTGAGTGATGGTGATGGTAA+TGG | - | chr7_4:7217983-7218002 | None:intergenic | 45.0% |
| TTACAGGGCAATGAAAGACG+TGG | - | chr7_4:7218015-7218034 | None:intergenic | 45.0% | |
| AGGCAGAGGTGGTAACATTA+AGG | - | chr7_4:7218917-7218936 | None:intergenic | 45.0% | |
| AAGTACTAAAGAGGCAGAGG+TGG | - | chr7_4:7218928-7218947 | None:intergenic | 45.0% | |
| CCTGCTAAGAACGATCTCTA+AGG | - | chr7_4:7218972-7218991 | None:intergenic | 45.0% | |
| CCTTAGAGATCGTTCTTAGC+AGG | + | chr7_4:7218969-7218988 | Msa1138030:intron | 45.0% | |
| !! | GCAGGTACTGACGATCTATT+TGG | + | chr7_4:7218987-7219006 | Msa1138030:intron | 45.0% |
| TCTAAACACACTTGCATGCC+AGG | + | chr7_4:7219303-7219322 | Msa1138030:intron | 45.0% | |
| CTAAACACACTTGCATGCCA+GGG | + | chr7_4:7219304-7219323 | Msa1138030:intron | 45.0% | |
| TGTATCCGTGGCCATTTAAC+AGG | - | chr7_4:7219426-7219445 | None:intergenic | 45.0% | |
| TAAATGGCCACGGATACAGA+TGG | + | chr7_4:7219428-7219447 | Msa1138030:CDS | 45.0% | |
| GGATTTCCTAAAGCTTTCCC+AGG | + | chr7_4:7219455-7219474 | Msa1138030:CDS | 45.0% | |
| TGAATGCCTGGGAAAGCTTT+AGG | - | chr7_4:7219464-7219483 | None:intergenic | 45.0% | |
| ATGCAACAAGATCTGTCGTG+AGG | + | chr7_4:7219484-7219503 | Msa1138030:CDS | 45.0% | |
| TGCAACAAGATCTGTCGTGA+GGG | + | chr7_4:7219485-7219504 | Msa1138030:CDS | 45.0% | |
| TTGTTGCCATCATTCAAGGG+TGG | + | chr7_4:7220729-7220748 | Msa1138030:CDS | 45.0% | |
| GGTCATCCATCTAAACAGGT+TGG | + | chr7_4:7220750-7220769 | Msa1138030:intron | 45.0% | |
| CGAACACCAACCTGTTTAGA+TGG | - | chr7_4:7220759-7220778 | None:intergenic | 45.0% | |
| !!! | TTTTGTCAGGCTTTTGAGGC+TGG | + | chr7_4:7220888-7220907 | Msa1138030:intron | 45.0% |
| TTATCAATGTCCTGAAGGGG+AGG | - | chr7_4:7221166-7221185 | None:intergenic | 45.0% | |
| ! | CCAACACAAGTGGGTTCTAT+AGG | - | chr7_4:7221321-7221340 | None:intergenic | 45.0% |
| CCTATAGAACCCACTTGTGT+TGG | + | chr7_4:7221318-7221337 | Msa1138030:intron | 45.0% | |
| TTGAACCTAAGACCTTGAGG+AGG | - | chr7_4:7221380-7221399 | None:intergenic | 45.0% | |
| CTAAACTAGCCCACCCAAAT+TGG | - | chr7_4:7221415-7221434 | None:intergenic | 45.0% | |
| CTAGGGATGGTGCAATTAAG+AGG | - | chr7_4:7221507-7221526 | None:intergenic | 45.0% | |
| GAACCTATGCATACTAGGGA+TGG | - | chr7_4:7221520-7221539 | None:intergenic | 45.0% | |
| CGGTTGTATGTCAACTATGG+TGG | - | chr7_4:7221576-7221595 | None:intergenic | 45.0% | |
| AGGCGGTTGTATGTCAACTA+TGG | - | chr7_4:7221579-7221598 | None:intergenic | 45.0% | |
| ACCGCCTAGCGACTTATATA+TGG | + | chr7_4:7221592-7221611 | Msa1138030:intron | 45.0% | |
| GCCTAGCGACTTATATATGG+TGG | + | chr7_4:7221595-7221614 | Msa1138030:intron | 45.0% | |
| CCCACCATATATAAGTCGCT+AGG | - | chr7_4:7221599-7221618 | None:intergenic | 45.0% | |
| AGAGGAACCTGTGCATACTA+GGG | + | chr7_4:7221647-7221666 | Msa1138030:intron | 45.0% | |
| TCCTATTCGTAGGGTCTGTT+TGG | + | chr7_4:7221796-7221815 | Msa1138030:intron | 45.0% | |
| CCTATTCGTAGGGTCTGTTT+GGG | + | chr7_4:7221797-7221816 | Msa1138030:intron | 45.0% | |
| CATGGCTGAATCTCATTTGC+AGG | + | chr7_4:7222066-7222085 | Msa1138030:intron | 45.0% | |
| !! | TCGTAAGGGCATTGTATGTC+GGG | + | chr7_4:7222393-7222412 | Msa1138030:three_prime_UTR | 45.0% |
| AAAGGGAAATGTGGTGACCT+GGG | - | chr7_4:7222432-7222451 | None:intergenic | 45.0% | |
| CACACACAGAAAGGGAAATG+TGG | - | chr7_4:7222441-7222460 | None:intergenic | 45.0% | |
| CACACACACACACACAGAAA+GGG | - | chr7_4:7222449-7222468 | None:intergenic | 45.0% | |
| ACACACACACACACACAGAA+AGG | - | chr7_4:7222450-7222469 | None:intergenic | 45.0% | |
| ! | TCGAGTATTTGTTGGCCACT+AGG | + | chr7_4:7222476-7222495 | Msa1138030:three_prime_UTR | 45.0% |
| TAGAGAGAGAATGGGCATGG+TGG | + | chr7_4:7217877-7217896 | Msa1138030:exon | 50.0% | |
| TGGATTCCATGGCTGAGTGA+TGG | - | chr7_4:7217995-7218014 | None:intergenic | 50.0% | |
| AGCTGTTCTGGCATCAAAGC+AGG | + | chr7_4:7219536-7219555 | Msa1138030:CDS | 50.0% | |
| GCAGGATGGAAAACTTCCAC+TGG | + | chr7_4:7219873-7219892 | Msa1138030:CDS | 50.0% | |
| ! | CACCCACGTGATTCGTTTTC+TGG | + | chr7_4:7220041-7220060 | Msa1138030:CDS | 50.0% |
| GGATGACCACCCTTGAATGA+TGG | - | chr7_4:7220738-7220757 | None:intergenic | 50.0% | |
| GGGTGGTCATCCATCTAAAC+AGG | + | chr7_4:7220746-7220765 | Msa1138030:CDS | 50.0% | |
| GTGAGCGAAGAACTTGACAG+CGG | + | chr7_4:7220942-7220961 | Msa1138030:CDS | 50.0% | |
| GATTTGTACTCCTCCCCTTC+AGG | + | chr7_4:7221153-7221172 | Msa1138030:intron | 50.0% | |
| TCTCAGGTGCCAATTTGGGT+GGG | + | chr7_4:7221403-7221422 | Msa1138030:intron | 50.0% | |
| GCACCATCCCTAGTATGCAT+AGG | + | chr7_4:7221514-7221533 | Msa1138030:intron | 50.0% | |
| !! | TGGTGGGTTGCATGAGGTAA+GGG | - | chr7_4:7221612-7221631 | None:intergenic | 50.0% |
| !! | ATGGTGGGTTGCATGAGGTA+AGG | - | chr7_4:7221611-7221630 | None:intergenic | 50.0% |
| !! | CAACTATGGTGGGTTGCATG+AGG | - | chr7_4:7221565-7221584 | None:intergenic | 50.0% |
| !! | ATGGTGGGTTGCATGAGGTA+AGG | + | chr7_4:7221611-7221630 | Msa1138030:intron | 50.0% |
| !! | TGGTGGGTTGCATGAGGTAA+GGG | + | chr7_4:7221612-7221631 | Msa1138030:intron | 50.0% |
| GAGAGGAACCTGTGCATACT+AGG | + | chr7_4:7221646-7221665 | Msa1138030:intron | 50.0% | |
| GAGGAACCTGTGCATACTAG+GGG | + | chr7_4:7221648-7221667 | Msa1138030:intron | 50.0% | |
| CTAGGGGTGGTGCAATTAAG+AGG | + | chr7_4:7221664-7221683 | Msa1138030:intron | 50.0% | |
| CCCAAACAGACCCTACGAAT+AGG | - | chr7_4:7221800-7221819 | None:intergenic | 50.0% | |
| GGCTGAATCTCATTTGCAGG+TGG | + | chr7_4:7222069-7222088 | Msa1138030:intron | 50.0% | |
| GAAAGGGAAATGTGGTGACC+TGG | - | chr7_4:7222433-7222452 | None:intergenic | 50.0% | |
| ! | TTGGAGAAGCACACAGTGCA+TGG | - | chr7_4:7222538-7222557 | None:intergenic | 50.0% |
| ! | CCATGGCTGAGTGATGGTGA+TGG | - | chr7_4:7217989-7218008 | None:intergenic | 55.0% |
| CCATCACCATCACTCAGCCA+TGG | + | chr7_4:7217986-7218005 | Msa1138030:CDS | 55.0% | |
| ATGGCCACGGATACAGATGG+AGG | + | chr7_4:7219431-7219450 | Msa1138030:CDS | 55.0% | |
| TCCTCCTCCATCTGTATCCG+TGG | - | chr7_4:7219438-7219457 | None:intergenic | 55.0% | |
| ! | AAGATCTGTCGTGAGGGTGC+CGG | + | chr7_4:7219491-7219510 | Msa1138030:CDS | 55.0% |
| TTTGCTGCAGGATCACTGCC+TGG | + | chr7_4:7219831-7219850 | Msa1138030:intron | 55.0% | |
| ! | AGAACCCACTTGTGTTGGCC+TGG | + | chr7_4:7221323-7221342 | Msa1138030:intron | 55.0% |
| ACCACCAGGCCAACACAAGT+GGG | - | chr7_4:7221330-7221349 | None:intergenic | 55.0% | |
| ! | TTGTGTTGGCCTGGTGGTGT+TGG | + | chr7_4:7221332-7221351 | Msa1138030:intron | 55.0% |
| ! | TTGAGGAGGAGCACACTCCA+AGG | - | chr7_4:7221366-7221385 | None:intergenic | 55.0% |
| TTGGAGTGTGCTCCTCCTCA+AGG | + | chr7_4:7221365-7221384 | Msa1138030:intron | 55.0% | |
| GTGCTCCTCCTCAAGGTCTT+AGG | + | chr7_4:7221372-7221391 | Msa1138030:intron | 55.0% | |
| GTCTCAGGTGCCAATTTGGG+TGG | + | chr7_4:7221402-7221421 | Msa1138030:intron | 55.0% | |
| GAACCTGTGCATACTAGGGG+TGG | + | chr7_4:7221651-7221670 | Msa1138030:intron | 55.0% | |
| GGTGACCTGGGTTCGAACTA+TGG | - | chr7_4:7222420-7222439 | None:intergenic | 55.0% | |
| GCCACGGATACAGATGGAGG+AGG | + | chr7_4:7219434-7219453 | Msa1138030:CDS | 60.0% | |
| GACGCAGACGCAGTTACTGC+AGG | - | chr7_4:7219630-7219649 | None:intergenic | 60.0% | |
| ! | ACCCACTTGTGTTGGCCTGG+TGG | + | chr7_4:7221326-7221345 | Msa1138030:intron | 60.0% |
| CACCACCAGGCCAACACAAG+TGG | - | chr7_4:7221331-7221350 | None:intergenic | 60.0% | |
| !! | TGGTGTTGGCCTTGGGACCT+TGG | + | chr7_4:7221346-7221365 | Msa1138030:intron | 60.0% |
| GAGCACACTCCAAGGTCCCA+AGG | - | chr7_4:7221358-7221377 | None:intergenic | 60.0% | |
| GCACCACCCCTAGTATGCAC+AGG | - | chr7_4:7221657-7221676 | None:intergenic | 60.0% | |
| CGGGTCCATAGTTCGAACCC+AGG | + | chr7_4:7222412-7222431 | Msa1138030:three_prime_UTR | 60.0% | |
| !! | TGGCCTGGTGGTGTTGGCCT+TGG | + | chr7_4:7221338-7221357 | Msa1138030:intron | 65.0% |
| !! | GGCCTGGTGGTGTTGGCCTT+GGG | + | chr7_4:7221339-7221358 | Msa1138030:intron | 65.0% |
| GTCCCAAGGCCAACACCACC+AGG | - | chr7_4:7221344-7221363 | None:intergenic | 65.0% | |
| !! | TGTCGTGAGGGTGCCGGCTC+TGG | + | chr7_4:7219497-7219516 | Msa1138030:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 7217849 | 7222608 | 7217849 | ID=Msa1138030;Name=Msa1138030 |
| chr7_4 | mRNA | 7217849 | 7222608 | 7217849 | ID=Msa1138030-mRNA-1;Parent=Msa1138030;Name=Msa1138030-mRNA-1;_AED=0.10;_eAED=0.10;_QI=38|1|1|1|1|1|8|374|324 |
| chr7_4 | exon | 7217849 | 7218030 | 7217849 | ID=Msa1138030-mRNA-1:exon:1998;Parent=Msa1138030-mRNA-1 |
| chr7_4 | exon | 7218195 | 7218307 | 7218195 | ID=Msa1138030-mRNA-1:exon:1999;Parent=Msa1138030-mRNA-1 |
| chr7_4 | exon | 7219407 | 7219557 | 7219407 | ID=Msa1138030-mRNA-1:exon:2000;Parent=Msa1138030-mRNA-1 |
| chr7_4 | exon | 7219841 | 7219914 | 7219841 | ID=Msa1138030-mRNA-1:exon:2001;Parent=Msa1138030-mRNA-1 |
| chr7_4 | exon | 7220020 | 7220179 | 7220020 | ID=Msa1138030-mRNA-1:exon:2002;Parent=Msa1138030-mRNA-1 |
| chr7_4 | exon | 7220669 | 7220767 | 7220669 | ID=Msa1138030-mRNA-1:exon:2003;Parent=Msa1138030-mRNA-1 |
| chr7_4 | exon | 7220897 | 7220983 | 7220897 | ID=Msa1138030-mRNA-1:exon:2004;Parent=Msa1138030-mRNA-1 |
| chr7_4 | exon | 7222088 | 7222608 | 7222088 | ID=Msa1138030-mRNA-1:exon:2005;Parent=Msa1138030-mRNA-1 |
| chr7_4 | five_prime_UTR | 7217849 | 7217886 | 7217849 | ID=Msa1138030-mRNA-1:five_prime_utr;Parent=Msa1138030-mRNA-1 |
| chr7_4 | CDS | 7217887 | 7218030 | 7217887 | ID=Msa1138030-mRNA-1:cds;Parent=Msa1138030-mRNA-1 |
| chr7_4 | CDS | 7218195 | 7218307 | 7218195 | ID=Msa1138030-mRNA-1:cds;Parent=Msa1138030-mRNA-1 |
| chr7_4 | CDS | 7219407 | 7219557 | 7219407 | ID=Msa1138030-mRNA-1:cds;Parent=Msa1138030-mRNA-1 |
| chr7_4 | CDS | 7219841 | 7219914 | 7219841 | ID=Msa1138030-mRNA-1:cds;Parent=Msa1138030-mRNA-1 |
| chr7_4 | CDS | 7220020 | 7220179 | 7220020 | ID=Msa1138030-mRNA-1:cds;Parent=Msa1138030-mRNA-1 |
| chr7_4 | CDS | 7220669 | 7220767 | 7220669 | ID=Msa1138030-mRNA-1:cds;Parent=Msa1138030-mRNA-1 |
| chr7_4 | CDS | 7220897 | 7220983 | 7220897 | ID=Msa1138030-mRNA-1:cds;Parent=Msa1138030-mRNA-1 |
| chr7_4 | CDS | 7222088 | 7222234 | 7222088 | ID=Msa1138030-mRNA-1:cds;Parent=Msa1138030-mRNA-1 |
| chr7_4 | three_prime_UTR | 7222235 | 7222608 | 7222235 | ID=Msa1138030-mRNA-1:three_prime_utr;Parent=Msa1138030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
