AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0251110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0251110 MtrunA17_Chr2g0309321 82.800 250 7 1 1 214 81 330 5.33e-145 407
Msa0251110 MtrunA17_Chr4g0058641 32.328 232 120 3 8 207 93 319 4.79e-29 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0251110 AT5G44600.1 52.033 246 81 2 1 209 88 333 3.07e-80 243
Msa0251110 AT5G44590.2 50.000 248 87 2 1 211 74 321 1.05e-75 231
Msa0251110 AT5G44590.1 46.617 266 87 3 1 211 74 339 3.68e-71 220
Msa0251110 AT5G63100.1 34.615 234 113 5 8 207 94 321 4.00e-25 100

Find 82 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAGAAGCATAGTAGATTT+AGG 0.193449 2_2:-40291945 None:intergenic
TCCATCACTCCTGTGCTTAA+AGG 0.228397 2_2:-40296932 None:intergenic
AAAGGTCCCATTGCTATCTT+AGG 0.249398 2_2:+40293363 Msa0251110:CDS
GATAAAGCAAGAGATTATTT+TGG 0.264676 2_2:+40294251 Msa0251110:CDS
TGTTCATAGCATTCTTTATA+AGG 0.265082 2_2:+40292079 Msa0251110:CDS
TTTGTATGAGGTGTTAATTA+TGG 0.320358 2_2:-40297116 None:intergenic
GGAGAAGCATAGTAGATTTA+GGG 0.323569 2_2:-40291944 None:intergenic
TATTTCTAATGACTAGGTTT+TGG 0.334385 2_2:+40297394 Msa0251110:three_prime_UTR
AAGATAGCAATGGGACCTTT+TGG 0.339083 2_2:-40293360 None:intergenic
CTCATTGTTGCTTGCTCAAA+CGG 0.354933 2_2:-40291649 None:intergenic
ATGGAGAGAATGGATGATTA+TGG 0.356656 2_2:-40291809 None:intergenic
TCCCATTGCTATCTTAGGTT+TGG 0.373072 2_2:+40293368 Msa0251110:CDS
GTGAACTGCGGCGGGATCGA+TGG 0.374002 2_2:+40295849 Msa0251110:CDS
CGGCATTGCAACTCGAAGGC+TGG 0.376977 2_2:+40293544 Msa0251110:CDS
TGGAACAGTGGAAAACTAAA+TGG 0.378430 2_2:-40291691 None:intergenic
TTGTATGAGGTGTTAATTAT+GGG 0.386588 2_2:-40297115 None:intergenic
ATAGAGGAGAGTATTGGTTT+TGG 0.387092 2_2:-40291786 None:intergenic
TACTTGTCCAGGAAATGCTT+TGG 0.390656 2_2:-40295949 None:intergenic
TGAACTGCGGCGGGATCGAT+GGG 0.399386 2_2:+40295850 Msa0251110:CDS
AAATTCTCACCCGTTTCCTT+TGG 0.400929 2_2:-40296851 None:intergenic
CACGGCGAACACCTCGTTTA+CGG 0.404159 2_2:+40297418 Msa0251110:three_prime_UTR
TATTAGGCTTTATTTGTATG+AGG 0.415504 2_2:-40297128 None:intergenic
GCATTATCCAAAGCATTTCC+TGG 0.417765 2_2:+40295942 Msa0251110:CDS
TGGAACAATGGCTGGTAAGC+TGG 0.424142 2_2:-40293340 None:intergenic
CCTTACCTGATCTAAAATCT+TGG 0.433757 2_2:+40296891 Msa0251110:CDS
GGAATTACATGATAGATTGA+TGG 0.439351 2_2:+40295809 Msa0251110:CDS
GAATGGATGATTATGGATAG+AGG 0.443261 2_2:-40291802 None:intergenic
AAAAGTGGACTAATTCCTAC+TGG 0.444949 2_2:+40292105 Msa0251110:CDS
TGAATAGTAAAAGAGTGAAA+TGG 0.449468 2_2:-40291753 None:intergenic
GAAGAGAATGCCAAAGGAAA+CGG 0.472724 2_2:+40296841 Msa0251110:CDS
CAGCCTTCGAGTTGCAATGC+CGG 0.476454 2_2:-40293543 None:intergenic
ACCAAACCTAAGATAGCAAT+GGG 0.480667 2_2:-40293369 None:intergenic
TCCTTTAAGCACAGGAGTGA+TGG 0.481104 2_2:+40296931 Msa0251110:CDS
ACTGTTCCACATATTGCCAT+TGG 0.483883 2_2:+40291705 Msa0251110:five_prime_UTR
TGAAGTGAAGATGGAGAGAA+TGG 0.485740 2_2:-40291819 None:intergenic
CTGCGGCGGGATCGATGGGG+TGG 0.485766 2_2:+40295854 Msa0251110:CDS
CTGACAGGTTAGTACTTGGT+TGG 0.487497 2_2:+40295788 Msa0251110:intron
AAATAGACGCTTACTTGTCC+AGG 0.498402 2_2:-40295960 None:intergenic
ACTCCTGTGCTTAAAGGAGA+TGG 0.500537 2_2:-40296926 None:intergenic
GGCATTGCAACTCGAAGGCT+GGG 0.503163 2_2:+40293545 Msa0251110:CDS
TTGTCTGACAGGTTAGTACT+TGG 0.503970 2_2:+40295784 Msa0251110:intron
TAAGCACAGGAGTGATGGAT+TGG 0.505919 2_2:+40296936 Msa0251110:CDS
TTACCAGCCATTGTTCCAAA+AGG 0.511816 2_2:+40293345 Msa0251110:CDS
AAAATATGATTTGTAGGGAA+AGG 0.521603 2_2:+40297014 Msa0251110:three_prime_UTR
TTATGGATAGAGGAGAGTAT+TGG 0.523474 2_2:-40291792 None:intergenic
TGTGGAGGTCTCAAAGGGCT+AGG 0.524356 2_2:-40297450 None:intergenic
TGTTGAGCATGAAGTGAAGA+TGG 0.525007 2_2:-40291828 None:intergenic
AAGAGAATGCCAAAGGAAAC+GGG 0.525414 2_2:+40296842 Msa0251110:CDS
CTCATCTGATGCTTGAATTG+TGG 0.526429 2_2:+40293520 Msa0251110:CDS
GGCGGGATCGATGGGGTGGA+TGG 0.530453 2_2:+40295858 Msa0251110:CDS
GTCCCATCTCCTTTAAGCAC+AGG 0.532466 2_2:+40296923 Msa0251110:CDS
TAAACACCAATGGCAATATG+TGG 0.550354 2_2:-40291711 None:intergenic
TGACAAGAGGAGAAAGCAAT+GGG 0.550569 2_2:+40291590 None:intergenic
CTCCTGTGCTTAAAGGAGAT+GGG 0.552215 2_2:-40296925 None:intergenic
TTGTCGTACGAGATGAATCA+AGG 0.555393 2_2:-40291965 None:intergenic
TCTTCTTCTTGATCATGATG+TGG 0.558881 2_2:-40291855 None:intergenic
TCTGATGCTTGAATTGTGGC+CGG 0.563302 2_2:+40293524 Msa0251110:CDS
AATTATCAAATGACGAGGCA+TGG 0.572264 2_2:+40295898 Msa0251110:CDS
CTGGAGAAGACAAACAAAGA+TGG 0.577869 2_2:+40294284 Msa0251110:CDS
TACCAAACCTAAGATAGCAA+TGG 0.583738 2_2:-40293370 None:intergenic
CATGATAGATTGATGGCCAA+TGG 0.587007 2_2:+40295816 Msa0251110:CDS
TCTAGTTATTTCTAATGACT+AGG 0.588328 2_2:+40297388 Msa0251110:three_prime_UTR
TTTGAGCAAGCAACAATGAG+AGG 0.588962 2_2:+40291652 Msa0251110:five_prime_UTR
GACATGTGTGGAGGTCTCAA+AGG 0.602454 2_2:-40297456 None:intergenic
GTGACAAGAGGAGAAAGCAA+TGG 0.608858 2_2:+40291589 None:intergenic
GTTCACCATAAAACGACCAT+TGG 0.610306 2_2:-40295832 None:intergenic
GAGAAGCATAGTAGATTTAG+GGG 0.618045 2_2:-40291943 None:intergenic
TGGCCGGCATTGCAACTCGA+AGG 0.621440 2_2:+40293540 Msa0251110:CDS
TGAACGAACATAGAGAATTG+AGG 0.626176 2_2:+40291613 Msa0251110:five_prime_UTR
TCATTAGAAATAACTAGAGG+AGG 0.626620 2_2:-40297383 None:intergenic
ACATGTGTGGAGGTCTCAAA+GGG 0.632423 2_2:-40297455 None:intergenic
TTGAGAATGATAAACACCAA+TGG 0.638616 2_2:-40291721 None:intergenic
AAAGTGGACTAATTCCTACT+GGG 0.641570 2_2:+40292106 Msa0251110:CDS
TTGAGCAAGCAACAATGAGA+GGG 0.645970 2_2:+40291653 Msa0251110:five_prime_UTR
AATGGCAATATGTGGAACAG+TGG 0.648751 2_2:-40291703 None:intergenic
TACATACATACATACCCAGT+AGG 0.657799 2_2:-40292120 None:intergenic
ATTCTAGAAACTATTTCACA+AGG 0.660007 2_2:-40296962 None:intergenic
GAACTGCGGCGGGATCGATG+GGG 0.666515 2_2:+40295851 Msa0251110:CDS
ATGTTGGAAGAGAATGCCAA+AGG 0.667941 2_2:+40296835 Msa0251110:CDS
GGACTGACAGTCCGTAAACG+AGG 0.672844 2_2:-40297429 None:intergenic
GAGAAGACAAACAAAGATGG+CGG 0.674112 2_2:+40294287 Msa0251110:CDS
TAGTCATTAGAAATAACTAG+AGG 0.682907 2_2:-40297386 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTTTTTTTTTGACT+AGG - chr2_2:40292958-40292977 None:intergenic 10.0%
!! TATGTAATTAAAAAAGTTAT+CGG - chr2_2:40293700-40293719 None:intergenic 10.0%
!! AAATATTTATTAGATATGAA+GGG - chr2_2:40294032-40294051 None:intergenic 10.0%
!! AAAATATTTATTAGATATGA+AGG - chr2_2:40294033-40294052 None:intergenic 10.0%
!! ACATCAATAATAATATAAAT+TGG + chr2_2:40294916-40294935 Msa0251110:intron 10.0%
!! ATAATAATATAAATTGGAAT+TGG + chr2_2:40294922-40294941 Msa0251110:intron 10.0%
!! AAAATTTGTAATCTTTATAT+GGG + chr2_2:40296045-40296064 Msa0251110:intron 10.0%
!! ATTTAGTAAAACTAAAGTAT+AGG + chr2_2:40292878-40292897 Msa0251110:intron 15.0%
!! TATAACATAATTGACATTTA+AGG - chr2_2:40293453-40293472 None:intergenic 15.0%
!!! ATACTGTTTTTTAAATCTTT+AGG + chr2_2:40293482-40293501 Msa0251110:intron 15.0%
!!! TACTGTTTTTTAAATCTTTA+GGG + chr2_2:40293483-40293502 Msa0251110:intron 15.0%
!! AACAAGTAAAAACATATAAA+GGG - chr2_2:40294948-40294967 None:intergenic 15.0%
!! CAAAATTTGTAATCTTTATA+TGG + chr2_2:40296044-40296063 Msa0251110:intron 15.0%
!! TAATCTTTATATGAGATATA+AGG + chr2_2:40296139-40296158 Msa0251110:intron 15.0%
!! AATCTTTATATGAGATATAA+GGG + chr2_2:40296140-40296159 Msa0251110:intron 15.0%
!!! AATACAAAACGTTTTATTAT+TGG + chr2_2:40296195-40296214 Msa0251110:intron 15.0%
!! TTTAAATTGGAAAATCAAAA+TGG - chr2_2:40296222-40296241 None:intergenic 15.0%
!! AATGTCTAATCAATTTAAAT+TGG - chr2_2:40296235-40296254 None:intergenic 15.0%
!!! TTTAGTTTCATAGATTATTT+TGG - chr2_2:40296353-40296372 None:intergenic 15.0%
!!! AATTTTGAAATGTTAATTTC+AGG + chr2_2:40296659-40296678 Msa0251110:intron 15.0%
!!! ATTTTGAAATGTTAATTTCA+GGG + chr2_2:40296660-40296679 Msa0251110:intron 15.0%
!! TTAAAAAAGTCACATAATAA+AGG - chr2_2:40296773-40296792 None:intergenic 15.0%
!!! AATGTAAAAATATGATTTGT+AGG + chr2_2:40297008-40297027 Msa0251110:three_prime_UTR 15.0%
!!! ATGTAAAAATATGATTTGTA+GGG + chr2_2:40297009-40297028 Msa0251110:three_prime_UTR 15.0%
!! ATATGTCAGCTATATATATT+AGG - chr2_2:40292860-40292879 None:intergenic 20.0%
!! AATTTCTAACATTATGTCAA+CGG - chr2_2:40293087-40293106 None:intergenic 20.0%
!! ACTTATAAGTATCAACATTT+AGG - chr2_2:40293221-40293240 None:intergenic 20.0%
!! GTAATTTCTTAATCTTAAGA+TGG + chr2_2:40293390-40293409 Msa0251110:intron 20.0%
!! ATTATCTTGGTCAATTTATA+AGG + chr2_2:40293418-40293437 Msa0251110:intron 20.0%
!! ATTTGAGTATAGATTATAGA+AGG + chr2_2:40293886-40293905 Msa0251110:intron 20.0%
!! CATGGTAAAATTAAATAACT+TGG + chr2_2:40293939-40293958 Msa0251110:intron 20.0%
!!! CAAATACTCTACAATTTTTA+TGG + chr2_2:40294002-40294021 Msa0251110:intron 20.0%
!! TTTCCGAGAAAATAAAATTT+GGG - chr2_2:40294212-40294231 None:intergenic 20.0%
!!! TTTTCCGAGAAAATAAAATT+TGG - chr2_2:40294213-40294232 None:intergenic 20.0%
!! TTATCGATCAACTAAATATT+TGG - chr2_2:40294236-40294255 None:intergenic 20.0%
!!! AATTAAGTTGTTTATCCAAA+CGG + chr2_2:40294449-40294468 Msa0251110:intron 20.0%
!! TTTCTCTTTGACTATTTAAT+GGG + chr2_2:40294684-40294703 Msa0251110:intron 20.0%
!! GAACAAGTAAAAACATATAA+AGG - chr2_2:40294949-40294968 None:intergenic 20.0%
!! ACATAATTAGAGAAAGTAAT+AGG - chr2_2:40295508-40295527 None:intergenic 20.0%
!! GCTTAAGCAAAAAAATTAAT+TGG + chr2_2:40295558-40295577 Msa0251110:intron 20.0%
!! AAAAAAATTAATTGGACCAA+TGG + chr2_2:40295566-40295585 Msa0251110:intron 20.0%
!!! TCGTCATTTGATAATTTTTT+TGG - chr2_2:40295894-40295913 None:intergenic 20.0%
!! AAAAAAATTATCAAATGACG+AGG + chr2_2:40295893-40295912 Msa0251110:CDS 20.0%
!!! TTTTTACATTTACTATGAAG+TGG - chr2_2:40296998-40297017 None:intergenic 20.0%
!!! TATTCTTTTGACATTTTCTT+GGG + chr2_2:40297067-40297086 Msa0251110:three_prime_UTR 20.0%
! TGAATAGTAAAAGAGTGAAA+TGG - chr2_2:40291756-40291775 None:intergenic 25.0%
! TGTTCATAGCATTCTTTATA+AGG + chr2_2:40292079-40292098 Msa0251110:CDS 25.0%
! TTCTTTATAAGGACAAAAAG+TGG + chr2_2:40292090-40292109 Msa0251110:CDS 25.0%
!!! TTATCAACATTGTTGATAAC+AGG - chr2_2:40292300-40292319 None:intergenic 25.0%
!! GTCTTATTGTCTTAGAATTT+AGG + chr2_2:40292339-40292358 Msa0251110:intron 25.0%
! TTATTGTCTTAGAATTTAGG+TGG + chr2_2:40292342-40292361 Msa0251110:intron 25.0%
! AATTGTATTAACCTTGTTCT+TGG + chr2_2:40292547-40292566 Msa0251110:intron 25.0%
! ATTGTATTAACCTTGTTCTT+GGG + chr2_2:40292548-40292567 Msa0251110:intron 25.0%
! ATTTCTAACATTATGTCAAC+GGG - chr2_2:40293086-40293105 None:intergenic 25.0%
! TAGATGAATTATTCATCACA+AGG + chr2_2:40293281-40293300 Msa0251110:intron 25.0%
! AGATGAATTATTCATCACAA+GGG + chr2_2:40293282-40293301 Msa0251110:intron 25.0%
! TAAGATGGAGTATATTATCT+TGG + chr2_2:40293405-40293424 Msa0251110:intron 25.0%
!!! TGTTTTTTAAATCTTTAGGG+TGG + chr2_2:40293486-40293505 Msa0251110:intron 25.0%
!! ACAAACATGAAATTTGTTCT+TGG + chr2_2:40293799-40293818 Msa0251110:intron 25.0%
!!! ATTATAGAAGGTACTTTCAT+TGG + chr2_2:40293898-40293917 Msa0251110:intron 25.0%
!!! ATTTTTTATATGAAGATGCC+AGG + chr2_2:40294048-40294067 Msa0251110:intron 25.0%
!!! TCACCCAAATTTTATTTTCT+CGG + chr2_2:40294206-40294225 Msa0251110:intron 25.0%
!! GATAAAGCAAGAGATTATTT+TGG + chr2_2:40294251-40294270 Msa0251110:CDS 25.0%
!! ATTAAGTTGTTTATCCAAAC+GGG + chr2_2:40294450-40294469 Msa0251110:intron 25.0%
! TAACCAATCTAACTAACTAA+TGG + chr2_2:40294509-40294528 Msa0251110:intron 25.0%
! AACATTAATGCATCATTGAA+TGG + chr2_2:40294597-40294616 Msa0251110:intron 25.0%
! CATTAAATAGTCAAAGAGAA+AGG - chr2_2:40294685-40294704 None:intergenic 25.0%
! CTTTCTCTTTGACTATTTAA+TGG + chr2_2:40294683-40294702 Msa0251110:intron 25.0%
! TTCTCTTTGACTATTTAATG+GGG + chr2_2:40294685-40294704 Msa0251110:intron 25.0%
! GGTCATTATAAAATTGTTCT+TGG + chr2_2:40294835-40294854 Msa0251110:intron 25.0%
! GTTTAGGTCATTCATTTATA+TGG + chr2_2:40295023-40295042 Msa0251110:intron 25.0%
! GTCATTCATTTATATGGTAT+AGG + chr2_2:40295029-40295048 Msa0251110:intron 25.0%
! CTGCAATTAACAAAATATAC+CGG - chr2_2:40295117-40295136 None:intergenic 25.0%
!! GGTATATTTTGTTAATTGCA+GGG + chr2_2:40295116-40295135 Msa0251110:intron 25.0%
! AGGTTAATGGGAATAAAATA+TGG + chr2_2:40295209-40295228 Msa0251110:intron 25.0%
!! AGAAAACATGGTTGATATTA+TGG + chr2_2:40295254-40295273 Msa0251110:intron 25.0%
! AAAGTGAAAGAACAAAGATT+AGG + chr2_2:40295286-40295305 Msa0251110:intron 25.0%
! TTTATGCAGTTATCAAGATA+AGG - chr2_2:40295363-40295382 None:intergenic 25.0%
!! ATCTTGATAACTGCATAAAA+AGG + chr2_2:40295364-40295383 Msa0251110:intron 25.0%
! TAATAAAAGCTCATAGGATA+GGG - chr2_2:40295394-40295413 None:intergenic 25.0%
!! TAATGCACAAACAGTTATTT+TGG + chr2_2:40295447-40295466 Msa0251110:intron 25.0%
! TATTATGATTCCATAACCAT+TGG - chr2_2:40295585-40295604 None:intergenic 25.0%
!!! TTTTTTCCTTGAGAAATCAA+AGG + chr2_2:40295691-40295710 Msa0251110:intron 25.0%
!! TTTGTTTAGCTCATATTCTT+AGG - chr2_2:40296028-40296047 None:intergenic 25.0%
! AAACTTCATGTGTTAGAATA+GGG - chr2_2:40296104-40296123 None:intergenic 25.0%
! AAAACTTCATGTGTTAGAAT+AGG - chr2_2:40296105-40296124 None:intergenic 25.0%
!!! TTGATTGCATTAGTCTTTTT+GGG - chr2_2:40296620-40296639 None:intergenic 25.0%
!!! ATTGATTGCATTAGTCTTTT+TGG - chr2_2:40296621-40296640 None:intergenic 25.0%
! AAAAAGACTAATGCAATCAA+TGG + chr2_2:40296620-40296639 Msa0251110:intron 25.0%
! TTTAGTCCCTAAAATTGTAA+GGG - chr2_2:40296700-40296719 None:intergenic 25.0%
! ATTTAGTCCCTAAAATTGTA+AGG - chr2_2:40296701-40296720 None:intergenic 25.0%
! AAAGTCACATAATAAAGGAA+AGG - chr2_2:40296768-40296787 None:intergenic 25.0%
!! ATTCTAGAAACTATTTCACA+AGG - chr2_2:40296965-40296984 None:intergenic 25.0%
!! AAAATATGATTTGTAGGGAA+AGG + chr2_2:40297014-40297033 Msa0251110:three_prime_UTR 25.0%
!! GTATTCTTTTGACATTTTCT+TGG + chr2_2:40297066-40297085 Msa0251110:three_prime_UTR 25.0%
!! ATTCTTTTGACATTTTCTTG+GGG + chr2_2:40297068-40297087 Msa0251110:three_prime_UTR 25.0%
!! TTGTATGAGGTGTTAATTAT+GGG - chr2_2:40297118-40297137 None:intergenic 25.0%
!! TTTGTATGAGGTGTTAATTA+TGG - chr2_2:40297119-40297138 None:intergenic 25.0%
!!! TATTAGGCTTTATTTGTATG+AGG - chr2_2:40297131-40297150 None:intergenic 25.0%
! TTATTTCAAAGTAATACCTC+AGG + chr2_2:40297187-40297206 Msa0251110:intron 25.0%
! ATTATAACCAAACAAACCAT+AGG + chr2_2:40297220-40297239 Msa0251110:intron 25.0%
!!! TTTATAACCTATGGTTTGTT+TGG - chr2_2:40297230-40297249 None:intergenic 25.0%
! TAGTCATTAGAAATAACTAG+AGG - chr2_2:40297389-40297408 None:intergenic 25.0%
!!! TCTAGTTATTTCTAATGACT+AGG + chr2_2:40297388-40297407 Msa0251110:three_prime_UTR 25.0%
!!! TATTTCTAATGACTAGGTTT+TGG + chr2_2:40297394-40297413 Msa0251110:three_prime_UTR 25.0%
TTGAGAATGATAAACACCAA+TGG - chr2_2:40291724-40291743 None:intergenic 30.0%
AGAAACAGAGAAAACAAAGT+GGG - chr2_2:40291994-40292013 None:intergenic 30.0%
TAGAAACAGAGAAAACAAAG+TGG - chr2_2:40291995-40292014 None:intergenic 30.0%
ATTAACTCACTTGACACAAT+AGG + chr2_2:40292233-40292252 Msa0251110:intron 30.0%
ATAACAGGCTTATTCAGTTA+TGG - chr2_2:40292285-40292304 None:intergenic 30.0%
!! AAAAATAAGCCGGTTTTGTA+GGG - chr2_2:40292380-40292399 None:intergenic 30.0%
!! TACAAAACCGGCTTATTTTT+GGG + chr2_2:40292380-40292399 Msa0251110:intron 30.0%
CTAAGTATGCTTACAAAGTT+TGG - chr2_2:40292411-40292430 None:intergenic 30.0%
CAAACTTTGTAAGCATACTT+AGG + chr2_2:40292409-40292428 Msa0251110:intron 30.0%
ATTGTATTCACTGTGTGATT+GGG - chr2_2:40292811-40292830 None:intergenic 30.0%
TGAATACAATGACACAAGTA+CGG + chr2_2:40292821-40292840 Msa0251110:intron 30.0%
CAGCAACTTATAATTTGACT+AGG - chr2_2:40292991-40293010 None:intergenic 30.0%
TTTCTAACATTATGTCAACG+GGG - chr2_2:40293085-40293104 None:intergenic 30.0%
ATATATGAACCACACGATAA+AGG - chr2_2:40293115-40293134 None:intergenic 30.0%
TTTATCGTGTGGTTCATATA+TGG + chr2_2:40293114-40293133 Msa0251110:intron 30.0%
!! GTGTTACATTGATTTGTCTT+CGG + chr2_2:40293136-40293155 Msa0251110:intron 30.0%
! CTGAACTTTTTGCATTAAAC+AGG + chr2_2:40293308-40293327 Msa0251110:intron 30.0%
!!! TTTTTAAATCTTTAGGGTGG+TGG + chr2_2:40293489-40293508 Msa0251110:intron 30.0%
TTTCAATTCTATCTCTGCTA+TGG + chr2_2:40293664-40293683 Msa0251110:intron 30.0%
TAACTTTCTTGTAGAACTTG+CGG - chr2_2:40293726-40293745 None:intergenic 30.0%
! AGAGTATTTGAACATGAACA+TGG - chr2_2:40293992-40294011 None:intergenic 30.0%
GATAACAATCAACAAGACAT+TGG - chr2_2:40294133-40294152 None:intergenic 30.0%
! CATTGATTAGATCCATAATG+CGG + chr2_2:40294170-40294189 Msa0251110:intron 30.0%
!!! TTATTTTGGCTTATCTGATC+TGG + chr2_2:40294265-40294284 Msa0251110:CDS 30.0%
GGCATTCTAAATGTTCATAT+TGG + chr2_2:40294308-40294327 Msa0251110:intron 30.0%
ATACAATGAAAATGACTCAC+CGG - chr2_2:40294375-40294394 None:intergenic 30.0%
! TTAAGTTGTTTATCCAAACG+GGG + chr2_2:40294451-40294470 Msa0251110:intron 30.0%
AGTCCATTAGTTAGTTAGAT+TGG - chr2_2:40294515-40294534 None:intergenic 30.0%
! CACATCTTAACATAATGGAA+CGG + chr2_2:40294554-40294573 Msa0251110:intron 30.0%
TACTCCTACTGCATAAAATA+AGG - chr2_2:40294646-40294665 None:intergenic 30.0%
TATACATGTGAACAATTTCC+AGG + chr2_2:40294735-40294754 Msa0251110:intron 30.0%
AAGTATCTCACGAAGAAAAT+TGG - chr2_2:40294994-40295013 None:intergenic 30.0%
GATACTTGATTGTACAGTTT+AGG + chr2_2:40295007-40295026 Msa0251110:intron 30.0%
ACAGGAACTTATAAAAGATC+CGG + chr2_2:40295095-40295114 Msa0251110:intron 30.0%
! CGGTATATTTTGTTAATTGC+AGG + chr2_2:40295115-40295134 Msa0251110:intron 30.0%
TAGATAGTCATCAGAAAACA+TGG + chr2_2:40295242-40295261 Msa0251110:intron 30.0%
AATAAAAGCTCATAGGATAG+GGG - chr2_2:40295393-40295412 None:intergenic 30.0%
CTAATAAAAGCTCATAGGAT+AGG - chr2_2:40295395-40295414 None:intergenic 30.0%
GCAAACTAATAAAAGCTCAT+AGG - chr2_2:40295400-40295419 None:intergenic 30.0%
CTTAAGCTCATAAATGTTCT+AGG - chr2_2:40295545-40295564 None:intergenic 30.0%
ATTAATTGGACCAATGGTTA+TGG + chr2_2:40295572-40295591 Msa0251110:intron 30.0%
! CTAGACTCAAACTTCTATTT+TGG - chr2_2:40295631-40295650 None:intergenic 30.0%
! TTCATACCTTTGATTTCTCA+AGG - chr2_2:40295700-40295719 None:intergenic 30.0%
! AAGTTAACTTTTATCATCGC+AGG + chr2_2:40295730-40295749 Msa0251110:intron 30.0%
! TAGTTCTTTATTTGTCTGAC+AGG + chr2_2:40295773-40295792 Msa0251110:intron 30.0%
GGAATTACATGATAGATTGA+TGG + chr2_2:40295809-40295828 Msa0251110:CDS 30.0%
GAAGTAGTATAACAGTGAAA+TGG - chr2_2:40296006-40296025 None:intergenic 30.0%
!! TTTTTAGTCAGTTTTGTCGA+TGG - chr2_2:40296547-40296566 None:intergenic 30.0%
! TTTTCATTTCTCAGCTATGT+TGG + chr2_2:40296819-40296838 Msa0251110:intron 30.0%
! CAAGATTTTAGATCAGGTAA+GGG - chr2_2:40296893-40296912 None:intergenic 30.0%
! CGATGCATGTCTATTTTATT+AGG - chr2_2:40297147-40297166 None:intergenic 30.0%
ACCATAGGTTATAAAATCCA+TGG + chr2_2:40297235-40297254 Msa0251110:intron 30.0%
! ACCATGGATTTTATAACCTA+TGG - chr2_2:40297239-40297258 None:intergenic 30.0%
! TGCAATGGAACAATTTCTTT+TGG - chr2_2:40297274-40297293 None:intergenic 30.0%
TCATTAGAAATAACTAGAGG+AGG - chr2_2:40297386-40297405 None:intergenic 30.0%
TGAACGAACATAGAGAATTG+AGG + chr2_2:40291613-40291632 Msa0251110:five_prime_UTR 35.0%
TGGAACAGTGGAAAACTAAA+TGG - chr2_2:40291694-40291713 None:intergenic 35.0%
TAAACACCAATGGCAATATG+TGG - chr2_2:40291714-40291733 None:intergenic 35.0%
!!! AGAGTATTGGTTTTGGTGTT+GGG - chr2_2:40291782-40291801 None:intergenic 35.0%
!!! ATAGAGGAGAGTATTGGTTT+TGG - chr2_2:40291789-40291808 None:intergenic 35.0%
! TTATGGATAGAGGAGAGTAT+TGG - chr2_2:40291795-40291814 None:intergenic 35.0%
GAATGGATGATTATGGATAG+AGG - chr2_2:40291805-40291824 None:intergenic 35.0%
ATGGAGAGAATGGATGATTA+TGG - chr2_2:40291812-40291831 None:intergenic 35.0%
TCTTCTTCTTGATCATGATG+TGG - chr2_2:40291858-40291877 None:intergenic 35.0%
! GAGAAGCATAGTAGATTTAG+GGG - chr2_2:40291946-40291965 None:intergenic 35.0%
! GGAGAAGCATAGTAGATTTA+GGG - chr2_2:40291947-40291966 None:intergenic 35.0%
! AGGAGAAGCATAGTAGATTT+AGG - chr2_2:40291948-40291967 None:intergenic 35.0%
!! AAAAGTGGACTAATTCCTAC+TGG + chr2_2:40292105-40292124 Msa0251110:CDS 35.0%
!! AAAGTGGACTAATTCCTACT+GGG + chr2_2:40292106-40292125 Msa0251110:CDS 35.0%
TACATACATACATACCCAGT+AGG - chr2_2:40292123-40292142 None:intergenic 35.0%
TTAATCCAACCCTACAAAAC+CGG + chr2_2:40292368-40292387 Msa0251110:intron 35.0%
!! CAAAAATAAGCCGGTTTTGT+AGG - chr2_2:40292381-40292400 None:intergenic 35.0%
!! CTACAAAACCGGCTTATTTT+TGG + chr2_2:40292379-40292398 Msa0251110:intron 35.0%
ACTTTGTAAGCATACTTAGG+CGG + chr2_2:40292412-40292431 Msa0251110:intron 35.0%
TTGTATTCACTGTGTGATTG+GGG - chr2_2:40292810-40292829 None:intergenic 35.0%
CATTGTATTCACTGTGTGAT+TGG - chr2_2:40292812-40292831 None:intergenic 35.0%
AATTTGACACCTTTATCGTG+TGG + chr2_2:40293103-40293122 Msa0251110:intron 35.0%
ACCAAACCTAAGATAGCAAT+GGG - chr2_2:40293372-40293391 None:intergenic 35.0%
TACCAAACCTAAGATAGCAA+TGG - chr2_2:40293373-40293392 None:intergenic 35.0%
ACTGACACATCAAATAGTTC+AGG - chr2_2:40293638-40293657 None:intergenic 35.0%
TAGTCAAACTATAGCTGACA+TGG + chr2_2:40293921-40293940 Msa0251110:intron 35.0%
ACATGGTATTAAGACTGACT+TGG - chr2_2:40293975-40293994 None:intergenic 35.0%
! TTTTATATGAAGATGCCAGG+TGG + chr2_2:40294051-40294070 Msa0251110:intron 35.0%
! TGGCTCTTTTCTTCTGTTTT+AGG + chr2_2:40294071-40294090 Msa0251110:intron 35.0%
! ATTGGTTAGCTAGTTAGGTA+GGG - chr2_2:40294497-40294516 None:intergenic 35.0%
! GTTAGATTGGTTAGCTAGTT+AGG - chr2_2:40294502-40294521 None:intergenic 35.0%
TCCATTATGTTAAGATGTGG+CGG - chr2_2:40294553-40294572 None:intergenic 35.0%
CGTTCCATTATGTTAAGATG+TGG - chr2_2:40294556-40294575 None:intergenic 35.0%
AAAATAAGGATCCATTCACG+TGG - chr2_2:40294632-40294651 None:intergenic 35.0%
!!! GGATCCTTATTTTATGCAGT+AGG + chr2_2:40294639-40294658 Msa0251110:intron 35.0%
AGAGAAAGGTGATTTCTGTA+TGG - chr2_2:40294671-40294690 None:intergenic 35.0%
TGAACAATTTCCAGGAATTG+TGG + chr2_2:40294743-40294762 Msa0251110:intron 35.0%
GTTTCAGATTTGCAAGTTCT+AGG + chr2_2:40294814-40294833 Msa0251110:intron 35.0%
! CTTGGAAAGATGACAACTTT+TGG + chr2_2:40294853-40294872 Msa0251110:intron 35.0%
TATAGGAAGATCAGAGTTTG+TGG + chr2_2:40295046-40295065 Msa0251110:intron 35.0%
! TACTCATGTGAGTTTTTGAC+AGG + chr2_2:40295077-40295096 Msa0251110:intron 35.0%
! GATCCAAATCTGAGGTTAAT+GGG + chr2_2:40295197-40295216 Msa0251110:intron 35.0%
ATTCCCATTAACCTCAGATT+TGG - chr2_2:40295203-40295222 None:intergenic 35.0%
ATAAAAGCTCATAGGATAGG+GGG - chr2_2:40295392-40295411 None:intergenic 35.0%
TGCCTCTTATTCGAAAATCA+AGG + chr2_2:40295474-40295493 Msa0251110:intron 35.0%
! CACCTTGATTTTCGAATAAG+AGG - chr2_2:40295479-40295498 None:intergenic 35.0%
AATTATCAAATGACGAGGCA+TGG + chr2_2:40295898-40295917 Msa0251110:CDS 35.0%
ACTAGCATCTGTTTACTTTC+TGG - chr2_2:40296081-40296100 None:intergenic 35.0%
GTGCTGTCAATGTCAAATAT+CGG + chr2_2:40296377-40296396 Msa0251110:intron 35.0%
AACTGACCAAAAGGACTAAT+GGG - chr2_2:40296577-40296596 None:intergenic 35.0%
AAACTGACCAAAAGGACTAA+TGG - chr2_2:40296578-40296597 None:intergenic 35.0%
! TGTCTGACCCTTACAATTTT+AGG + chr2_2:40296690-40296709 Msa0251110:intron 35.0%
! GTCTGACCCTTACAATTTTA+GGG + chr2_2:40296691-40296710 Msa0251110:intron 35.0%
GAAGTTGGCATTAATACAAC+AGG - chr2_2:40296741-40296760 None:intergenic 35.0%
TAAAGGAAAGGATGTGAAGT+TGG - chr2_2:40296756-40296775 None:intergenic 35.0%
! GAGAATTTTATGGCACTTAC+AGG + chr2_2:40296866-40296885 Msa0251110:CDS 35.0%
! CCAAGATTTTAGATCAGGTA+AGG - chr2_2:40296894-40296913 None:intergenic 35.0%
! CCTTACCTGATCTAAAATCT+TGG + chr2_2:40296891-40296910 Msa0251110:CDS 35.0%
TATAATGCAACATGATCCTG+AGG - chr2_2:40297206-40297225 None:intergenic 35.0%
TTGGATGTTTCAATTGACCA+TGG - chr2_2:40297255-40297274 None:intergenic 35.0%
TCCATTGCATCAACATCTAA+TGG + chr2_2:40297285-40297304 Msa0251110:intron 35.0%
AACAGTGCATCAACATCTAA+TGG - chr2_2:40297325-40297344 None:intergenic 35.0%
! TGTGTTGTTAGATGTTGTCT+AGG - chr2_2:40297353-40297372 None:intergenic 35.0%
!! TAATGACTAGGTTTTGGTCA+CGG + chr2_2:40297400-40297419 Msa0251110:three_prime_UTR 35.0%
! CTCATTGTTGCTTGCTCAAA+CGG - chr2_2:40291652-40291671 None:intergenic 40.0%
TTTGAGCAAGCAACAATGAG+AGG + chr2_2:40291652-40291671 Msa0251110:five_prime_UTR 40.0%
TTGAGCAAGCAACAATGAGA+GGG + chr2_2:40291653-40291672 Msa0251110:five_prime_UTR 40.0%
AATGGCAATATGTGGAACAG+TGG - chr2_2:40291706-40291725 None:intergenic 40.0%
ACTGTTCCACATATTGCCAT+TGG + chr2_2:40291705-40291724 Msa0251110:five_prime_UTR 40.0%
!!! GAGTATTGGTTTTGGTGTTG+GGG - chr2_2:40291781-40291800 None:intergenic 40.0%
!!! GAGAGTATTGGTTTTGGTGT+TGG - chr2_2:40291783-40291802 None:intergenic 40.0%
TGAAGTGAAGATGGAGAGAA+TGG - chr2_2:40291822-40291841 None:intergenic 40.0%
TGTTGAGCATGAAGTGAAGA+TGG - chr2_2:40291831-40291850 None:intergenic 40.0%
TTGTCGTACGAGATGAATCA+AGG - chr2_2:40291968-40291987 None:intergenic 40.0%
GGACAATCCCAAAAATAAGC+CGG - chr2_2:40292390-40292409 None:intergenic 40.0%
AACCTCCAACACCTTAATTG+AGG - chr2_2:40292449-40292468 None:intergenic 40.0%
TGCGAATTCCGCTTTAATTG+AGG - chr2_2:40292518-40292537 None:intergenic 40.0%
GTATTAACCTTGTTCTTGGG+TGG + chr2_2:40292551-40292570 Msa0251110:intron 40.0%
CTGTGAGAAAATGTAAGCAG+AGG + chr2_2:40292601-40292620 Msa0251110:intron 40.0%
CTAGACTGTGATCCTTTGAT+GGG + chr2_2:40292765-40292784 Msa0251110:intron 40.0%
TGTATTCACTGTGTGATTGG+GGG - chr2_2:40292809-40292828 None:intergenic 40.0%
CATTATGTCAACGGGGTTAA+AGG - chr2_2:40293078-40293097 None:intergenic 40.0%
TTACCAGCCATTGTTCCAAA+AGG + chr2_2:40293345-40293364 Msa0251110:CDS 40.0%
!!! AATGGGACCTTTTGGAACAA+TGG - chr2_2:40293355-40293374 None:intergenic 40.0%
! AAGATAGCAATGGGACCTTT+TGG - chr2_2:40293363-40293382 None:intergenic 40.0%
AAAGGTCCCATTGCTATCTT+AGG + chr2_2:40293363-40293382 Msa0251110:CDS 40.0%
TCCCATTGCTATCTTAGGTT+TGG + chr2_2:40293368-40293387 Msa0251110:CDS 40.0%
CTCATCTGATGCTTGAATTG+TGG + chr2_2:40293520-40293539 Msa0251110:CDS 40.0%
GACACATCAAATAGTTCAGG+TGG - chr2_2:40293635-40293654 None:intergenic 40.0%
CAAATTGTCCACTAGTGCTT+TGG + chr2_2:40293862-40293881 Msa0251110:intron 40.0%
! CTCAAATTCCAAAGCACTAG+TGG - chr2_2:40293873-40293892 None:intergenic 40.0%
AAGTGAGAACATCCGCATTA+TGG - chr2_2:40294185-40294204 None:intergenic 40.0%
CTGGAGAAGACAAACAAAGA+TGG + chr2_2:40294284-40294303 Msa0251110:CDS 40.0%
GAGAAGACAAACAAAGATGG+CGG + chr2_2:40294287-40294306 Msa0251110:CDS 40.0%
CAAATCCTCTGATGGAATGA+AGG - chr2_2:40294339-40294358 None:intergenic 40.0%
GATTTGCACAGAAGATATGC+CGG + chr2_2:40294353-40294372 Msa0251110:intron 40.0%
TTAAAAACACAAGCCCCGTT+TGG - chr2_2:40294467-40294486 None:intergenic 40.0%
! TTGGTTAGCTAGTTAGGTAG+GGG - chr2_2:40294496-40294515 None:intergenic 40.0%
! GATTGGTTAGCTAGTTAGGT+AGG - chr2_2:40294498-40294517 None:intergenic 40.0%
TCCGCCACATCTTAACATAA+TGG + chr2_2:40294549-40294568 Msa0251110:intron 40.0%
TGCATCATTGAATGGTTGAG+TGG + chr2_2:40294605-40294624 Msa0251110:intron 40.0%
AACAAGTCAACCACAATTCC+TGG - chr2_2:40294756-40294775 None:intergenic 40.0%
TGGCTTATAGCTGAGTTACT+AGG - chr2_2:40294974-40294993 None:intergenic 40.0%
ATGTAGAAAGCTCACATGAG+AGG + chr2_2:40295175-40295194 Msa0251110:intron 40.0%
! GGATCCAAATCTGAGGTTAA+TGG + chr2_2:40295196-40295215 Msa0251110:intron 40.0%
! TCTGATGACTATCTAGAGTC+TGG - chr2_2:40295237-40295256 None:intergenic 40.0%
TAAAAGCTCATAGGATAGGG+GGG - chr2_2:40295391-40295410 None:intergenic 40.0%
! AACTTTTATCATCGCAGGCA+TGG + chr2_2:40295735-40295754 Msa0251110:intron 40.0%
TTGTCTGACAGGTTAGTACT+TGG + chr2_2:40295784-40295803 Msa0251110:intron 40.0%
! CATGATAGATTGATGGCCAA+TGG + chr2_2:40295816-40295835 Msa0251110:CDS 40.0%
GTTCACCATAAAACGACCAT+TGG - chr2_2:40295835-40295854 None:intergenic 40.0%
! GCATTATCCAAAGCATTTCC+TGG + chr2_2:40295942-40295961 Msa0251110:CDS 40.0%
TACTTGTCCAGGAAATGCTT+TGG - chr2_2:40295952-40295971 None:intergenic 40.0%
AAATAGACGCTTACTTGTCC+AGG - chr2_2:40295963-40295982 None:intergenic 40.0%
TCAATGTCAAATATCGGCCA+TGG + chr2_2:40296383-40296402 Msa0251110:intron 40.0%
!!! GTCTTTTTGGGACGTTTTAC+CGG - chr2_2:40296608-40296627 None:intergenic 40.0%
ATGTTGGAAGAGAATGCCAA+AGG + chr2_2:40296835-40296854 Msa0251110:CDS 40.0%
GAAGAGAATGCCAAAGGAAA+CGG + chr2_2:40296841-40296860 Msa0251110:CDS 40.0%
AAGAGAATGCCAAAGGAAAC+GGG + chr2_2:40296842-40296861 Msa0251110:CDS 40.0%
AAATTCTCACCCGTTTCCTT+TGG - chr2_2:40296854-40296873 None:intergenic 40.0%
! GGAAACGGGTGAGAATTTTA+TGG + chr2_2:40296856-40296875 Msa0251110:CDS 40.0%
! GCAGACCAAGATTTTAGATC+AGG - chr2_2:40296899-40296918 None:intergenic 40.0%
GCCATTAGATGTTGATGCAA+TGG - chr2_2:40297289-40297308 None:intergenic 40.0%
TGCATCAACATCTAATGGCT+AGG - chr2_2:40297290-40297309 None:intergenic 40.0%
!! ATAAGCCGGTTTTGTAGGGT+TGG - chr2_2:40292376-40292395 None:intergenic 45.0%
AAGCATACTTAGGCGGCTTT+CGG + chr2_2:40292419-40292438 Msa0251110:intron 45.0%
!! GACCTCAATTAAGGTGTTGG+AGG + chr2_2:40292444-40292463 Msa0251110:intron 45.0%
! GGTGTTGGAGGTTGTAATGA+AGG + chr2_2:40292456-40292475 Msa0251110:intron 45.0%
TTGTCTTCCACCCAAGAACA+AGG - chr2_2:40292561-40292580 None:intergenic 45.0%
GCTAGACTGTGATCCTTTGA+TGG + chr2_2:40292764-40292783 Msa0251110:intron 45.0%
TGTGATCCTTTGATGGGATC+AGG + chr2_2:40292771-40292790 Msa0251110:intron 45.0%
CATCATCCTGATCCCATCAA+AGG - chr2_2:40292780-40292799 None:intergenic 45.0%
CTTTGATGGGATCAGGATGA+TGG + chr2_2:40292778-40292797 Msa0251110:intron 45.0%
TCTGATGCTTGAATTGTGGC+CGG + chr2_2:40293524-40293543 Msa0251110:CDS 45.0%
AACAGAAGAAAAGAGCCACC+TGG - chr2_2:40294069-40294088 None:intergenic 45.0%
TGATGCCTTCATTCCATCAG+AGG + chr2_2:40294331-40294350 Msa0251110:intron 45.0%
CTTCTGTGCAAATCCTCTGA+TGG - chr2_2:40294347-40294366 None:intergenic 45.0%
ACGGTGAAGCACAATTCAAC+TGG + chr2_2:40294573-40294592 Msa0251110:intron 45.0%
!! GTGGTTGACTTGTTCTCTGA+CGG + chr2_2:40294762-40294781 Msa0251110:intron 45.0%
! AGTTTTACCTCAGCTGCAAG+AGG + chr2_2:40294788-40294807 Msa0251110:intron 45.0%
AAACATACCTCTTGCAGCTG+AGG - chr2_2:40294798-40294817 None:intergenic 45.0%
CATGAGAGGATCCAAATCTG+AGG + chr2_2:40295189-40295208 Msa0251110:intron 45.0%
AAAAGCTCATAGGATAGGGG+GGG - chr2_2:40295390-40295409 None:intergenic 45.0%
CTGACAGGTTAGTACTTGGT+TGG + chr2_2:40295788-40295807 Msa0251110:intron 45.0%
!! GATGGCCAATGGTCGTTTTA+TGG + chr2_2:40295827-40295846 Msa0251110:CDS 45.0%
!! GGTCGTTTTATGGTGAACTG+CGG + chr2_2:40295837-40295856 Msa0251110:CDS 45.0%
!! GCATATAAGAGCACTCATGC+AGG + chr2_2:40296166-40296185 Msa0251110:intron 45.0%
GGCGTCATCATATCGGATTA+TGG - chr2_2:40296488-40296507 None:intergenic 45.0%
GCTTTGTGGCGTCATCATAT+CGG - chr2_2:40296495-40296514 None:intergenic 45.0%
! GATATGATGACGCCACAAAG+CGG + chr2_2:40296494-40296513 Msa0251110:intron 45.0%
CTCCTGTGCTTAAAGGAGAT+GGG - chr2_2:40296928-40296947 None:intergenic 45.0%
ACTCCTGTGCTTAAAGGAGA+TGG - chr2_2:40296929-40296948 None:intergenic 45.0%
TCCTTTAAGCACAGGAGTGA+TGG + chr2_2:40296931-40296950 Msa0251110:CDS 45.0%
TCCATCACTCCTGTGCTTAA+AGG - chr2_2:40296935-40296954 None:intergenic 45.0%
!! TAAGCACAGGAGTGATGGAT+TGG + chr2_2:40296936-40296955 Msa0251110:CDS 45.0%
CTTTCGGCGGACCTCAATTA+AGG + chr2_2:40292435-40292454 Msa0251110:intron 50.0%
GCGGACCTCAATTAAGGTGT+TGG + chr2_2:40292441-40292460 Msa0251110:intron 50.0%
GTAACCCAGATGCCGCAATT+AGG + chr2_2:40292478-40292497 Msa0251110:intron 50.0%
TGGGCGGACCTCAATTAAAG+CGG + chr2_2:40292507-40292526 Msa0251110:intron 50.0%
GCAGCTGTAACAGCTTCTCA+CGG - chr2_2:40292715-40292734 None:intergenic 50.0%
TGGAACAATGGCTGGTAAGC+TGG - chr2_2:40293343-40293362 None:intergenic 50.0%
!!! GGACCTTTTGGAACAATGGC+TGG - chr2_2:40293351-40293370 None:intergenic 50.0%
! CGTTTTATGGTGAACTGCGG+CGG + chr2_2:40295840-40295859 Msa0251110:CDS 50.0%
! GTTTTATGGTGAACTGCGGC+GGG + chr2_2:40295841-40295860 Msa0251110:CDS 50.0%
!!! CGGATATTGGTGGTGGCTTT+TGG + chr2_2:40296417-40296436 Msa0251110:intron 50.0%
! ATGTCGGCTGAAATTGGGCA+TGG - chr2_2:40296451-40296470 None:intergenic 50.0%
! CCGACATGTCGGCTGAAATT+GGG - chr2_2:40296456-40296475 None:intergenic 50.0%
CCCAATTTCAGCCGACATGT+CGG + chr2_2:40296453-40296472 Msa0251110:intron 50.0%
CCAATTTCAGCCGACATGTC+GGG + chr2_2:40296454-40296473 Msa0251110:intron 50.0%
! AGCCGACATGTCGGGATTTT+CGG + chr2_2:40296462-40296481 Msa0251110:intron 50.0%
GAGCCAAAATCCTGCCATTC+CGG - chr2_2:40296520-40296539 None:intergenic 50.0%
CAAAAGGACTAATGGGAGCG+AGG - chr2_2:40296570-40296589 None:intergenic 50.0%
! CTCGCTCCCATTAGTCCTTT+TGG + chr2_2:40296568-40296587 Msa0251110:intron 50.0%
GTCCCATCTCCTTTAAGCAC+AGG + chr2_2:40296923-40296942 Msa0251110:CDS 50.0%
CATACTTAGGCGGCTTTCGG+CGG + chr2_2:40292422-40292441 Msa0251110:intron 55.0%
ACCCAGATGCCGCAATTAGG+CGG + chr2_2:40292481-40292500 Msa0251110:intron 55.0%
ATGCCGCAATTAGGCGGCTT+TGG + chr2_2:40292487-40292506 Msa0251110:intron 55.0%
TGCCGCAATTAGGCGGCTTT+GGG + chr2_2:40292488-40292507 Msa0251110:intron 55.0%
TCACTGTGTGATTGGGGGCT+TGG - chr2_2:40292804-40292823 None:intergenic 55.0%
!! CAGCCTTCGAGTTGCAATGC+CGG - chr2_2:40293546-40293565 None:intergenic 55.0%
GGCATTGCAACTCGAAGGCT+GGG + chr2_2:40293545-40293564 Msa0251110:CDS 55.0%
! AGCTAGTTAGGTAGGGGCAC+TGG - chr2_2:40294490-40294509 None:intergenic 55.0%
GGTTGAGTGGACCACGTGAA+TGG + chr2_2:40294618-40294637 Msa0251110:intron 55.0%
! AGCACCTTGGCGGATATTGG+TGG + chr2_2:40296407-40296426 Msa0251110:intron 55.0%
! ACCTTGGCGGATATTGGTGG+TGG + chr2_2:40296410-40296429 Msa0251110:intron 55.0%
TCGGCTGAAATTGGGCATGG+CGG - chr2_2:40296448-40296467 None:intergenic 55.0%
! CCCGACATGTCGGCTGAAAT+TGG - chr2_2:40296457-40296476 None:intergenic 55.0%
GGCCGAAAATCCCGACATGT+CGG - chr2_2:40296467-40296486 None:intergenic 55.0%
CACGGCGAACACCTCGTTTA+CGG + chr2_2:40297418-40297437 Msa0251110:three_prime_UTR 55.0%
GGACTGACAGTCCGTAAACG+AGG - chr2_2:40297432-40297451 None:intergenic 55.0%
GCCGCCTAATTGCGGCATCT+GGG - chr2_2:40292485-40292504 None:intergenic 60.0%
AGCCGCCTAATTGCGGCATC+TGG - chr2_2:40292486-40292505 None:intergenic 60.0%
CGCCCAAAGCCGCCTAATTG+CGG - chr2_2:40292493-40292512 None:intergenic 60.0%
!! CGCAATTAGGCGGCTTTGGG+CGG + chr2_2:40292491-40292510 Msa0251110:intron 60.0%
TGGCCGGCATTGCAACTCGA+AGG + chr2_2:40293540-40293559 Msa0251110:CDS 60.0%
CGGCATTGCAACTCGAAGGC+TGG + chr2_2:40293544-40293563 Msa0251110:CDS 60.0%
TGAACTGCGGCGGGATCGAT+GGG + chr2_2:40295850-40295869 Msa0251110:CDS 60.0%
TATCGGCCATGGCAGCACCT+TGG + chr2_2:40296394-40296413 Msa0251110:intron 60.0%
!! TATCCGCCAAGGTGCTGCCA+TGG - chr2_2:40296403-40296422 None:intergenic 60.0%
! GGCAGCACCTTGGCGGATAT+TGG + chr2_2:40296404-40296423 Msa0251110:intron 60.0%
GCCACCACCAATATCCGCCA+AGG - chr2_2:40296414-40296433 None:intergenic 60.0%
! TGATGACGCCACAAAGCGGC+CGG + chr2_2:40296498-40296517 Msa0251110:intron 60.0%
! CGGCCGGAATGGCAGGATTT+TGG + chr2_2:40296514-40296533 Msa0251110:intron 60.0%
GTGAACTGCGGCGGGATCGA+TGG + chr2_2:40295849-40295868 Msa0251110:CDS 65.0%
GAACTGCGGCGGGATCGATG+GGG + chr2_2:40295851-40295870 Msa0251110:CDS 65.0%
ACGCCACAAAGCGGCCGGAA+TGG + chr2_2:40296503-40296522 Msa0251110:intron 65.0%
! CTGCCATTCCGGCCGCTTTG+TGG - chr2_2:40296509-40296528 None:intergenic 65.0%
CACAAAGCGGCCGGAATGGC+AGG + chr2_2:40296507-40296526 Msa0251110:intron 65.0%
GGCGGGATCGATGGGGTGGA+TGG + chr2_2:40295858-40295877 Msa0251110:CDS 70.0%
CGGCCATGGCAGCACCTTGG+CGG + chr2_2:40296397-40296416 Msa0251110:intron 70.0%
CTGCGGCGGGATCGATGGGG+TGG + chr2_2:40295854-40295873 Msa0251110:CDS 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 40291600 40297463 40291600 ID=Msa0251110;Name=Msa0251110
chr2_2 mRNA 40291600 40297463 40291600 ID=Msa0251110-mRNA-1;Parent=Msa0251110;Name=Msa0251110-mRNA-1;_AED=0.22;_eAED=0.22;_QI=330|0.85|0.87|1|0.71|0.62|8|276|214
chr2_2 exon 40291600 40291978 40291600 ID=Msa0251110-mRNA-1:exon:12607;Parent=Msa0251110-mRNA-1
chr2_2 exon 40292075 40292127 40292075 ID=Msa0251110-mRNA-1:exon:12608;Parent=Msa0251110-mRNA-1
chr2_2 exon 40293330 40293389 40293330 ID=Msa0251110-mRNA-1:exon:12609;Parent=Msa0251110-mRNA-1
chr2_2 exon 40293504 40293581 40293504 ID=Msa0251110-mRNA-1:exon:12610;Parent=Msa0251110-mRNA-1
chr2_2 exon 40294245 40294319 40294245 ID=Msa0251110-mRNA-1:exon:12611;Parent=Msa0251110-mRNA-1
chr2_2 exon 40295795 40295968 40295795 ID=Msa0251110-mRNA-1:exon:12612;Parent=Msa0251110-mRNA-1
chr2_2 exon 40296833 40297155 40296833 ID=Msa0251110-mRNA-1:exon:12613;Parent=Msa0251110-mRNA-1
chr2_2 exon 40297355 40297463 40297355 ID=Msa0251110-mRNA-1:exon:12614;Parent=Msa0251110-mRNA-1
chr2_2 five_prime_UTR 40291600 40291929 40291600 ID=Msa0251110-mRNA-1:five_prime_utr;Parent=Msa0251110-mRNA-1
chr2_2 CDS 40291930 40291978 40291930 ID=Msa0251110-mRNA-1:cds;Parent=Msa0251110-mRNA-1
chr2_2 CDS 40292075 40292127 40292075 ID=Msa0251110-mRNA-1:cds;Parent=Msa0251110-mRNA-1
chr2_2 CDS 40293330 40293389 40293330 ID=Msa0251110-mRNA-1:cds;Parent=Msa0251110-mRNA-1
chr2_2 CDS 40293504 40293581 40293504 ID=Msa0251110-mRNA-1:cds;Parent=Msa0251110-mRNA-1
chr2_2 CDS 40294245 40294319 40294245 ID=Msa0251110-mRNA-1:cds;Parent=Msa0251110-mRNA-1
chr2_2 CDS 40295795 40295968 40295795 ID=Msa0251110-mRNA-1:cds;Parent=Msa0251110-mRNA-1
chr2_2 CDS 40296833 40296988 40296833 ID=Msa0251110-mRNA-1:cds;Parent=Msa0251110-mRNA-1
chr2_2 three_prime_UTR 40296989 40297155 40296989 ID=Msa0251110-mRNA-1:three_prime_utr;Parent=Msa0251110-mRNA-1
chr2_2 three_prime_UTR 40297355 40297463 40297355 ID=Msa0251110-mRNA-1:three_prime_utr;Parent=Msa0251110-mRNA-1
Gene Sequence

>Msa0251110

ATGATTGTTGATACCCCTAAATCTACTATGCTTCTCCTTGATTCATCTCATAATGTTCATAGCATTCTTTATAAGGACAAAAAGTGGACTAATTCCTACTGGGATGAGTTTGCCAGCTTACCAGCCATTGTTCCAAAAGGTCCCATTGCTATCTTAGGTTTGGGTGGTGGAACTGCTGCTCATCTGATGCTTGAATTGTGGCCGGCATTGCAACTCGAAGGCTGGGAGATTGATGACATTTTGATCGATAAAGCAAGAGATTATTTTGGCTTATCTGATCTGGAGAAGACAAACAAAGATGGCGGCATTCTAAATGTTAGTACTTGGTTGGAATTACATGATAGATTGATGGCCAATGGTCGTTTTATGGTGAACTGCGGCGGGATCGATGGGGTGGATGGAAGTACTGATCCAAAAAAATTATCAAATGACGAGGCATGGTTATTAAATGCTGCAATCAAAGCATTATCCAAAGCATTTCCTGGACAACTATGTTGGAAGAGAATGCCAAAGGAAACGGGTGAGAATTTTATGGCACTTACAGGACCCTTACCTGATCTAAAATCTTGGTCTGCTAATGTCCCATCTCCTTTAAGCACAGGAGTGATGGATTGGAGACCTTGTGAAATAGTTTCTAGAATTTGA

Protein sequence

>Msa0251110

MIVDTPKSTMLLLDSSHNVHSILYKDKKWTNSYWDEFASLPAIVPKGPIAILGLGGGTAAHLMLELWPALQLEGWEIDDILIDKARDYFGLSDLEKTNKDGGILNVSTWLELHDRLMANGRFMVNCGGIDGVDGSTDPKKLSNDEAWLLNAAIKALSKAFPGQLCWKRMPKETGENFMALTGPLPDLKSWSANVPSPLSTGVMDWRPCEIVSRI*