AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0175100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0175100 MtrunA17_Chr1g0201261 96.477 511 17 1 1 510 1 511 0.0 995
Msa0175100 MtrunA17_Chr2g0293821 30.244 205 135 4 274 475 158 357 1.21e-22 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0175100 AT1G71720.1 57.490 494 168 9 26 509 37 498 0.0 532
Msa0175100 AT1G71720.2 58.156 423 139 6 26 441 37 428 2.43e-159 460
Msa0175100 AT5G30510.1 32.195 205 130 4 274 475 165 363 1.93e-25 108

Find 119 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCATACAGAGAGTATTTA+TGG 0.166666 1_4:-60917405 Msa0175100:intron
GTTGTTGGTGTTGTTGTTTC+AGG 0.170222 1_4:-60920797 Msa0175100:CDS
TCTATAATGAACACCTAAAA+TGG 0.219855 1_4:+60916916 None:intergenic
CCTATTGTCTCTACAAAATT+AGG 0.227064 1_4:-60917338 Msa0175100:CDS
CATTGTTCTCCTATGTTGTT+TGG 0.236176 1_4:-60917074 Msa0175100:three_prime_UTR
AGGAGTGGAAAGAACAATAT+TGG 0.289687 1_4:+60921222 None:intergenic
GAACAAGCCGTCACCTGTTT+TGG 0.299137 1_4:-60921059 Msa0175100:CDS
GCATGGGGCTATAAAGTATT+TGG 0.301852 1_4:-60917040 Msa0175100:three_prime_UTR
ACTGAACAAAGCATTATCTT+TGG 0.305171 1_4:+60921362 None:intergenic
GCAACAAGAAAGAAATTTAA+AGG 0.309774 1_4:+60916975 None:intergenic
AATATCAAAATTTCAGTGAT+TGG 0.317959 1_4:+60916682 None:intergenic
GGATGAAGTTGAAGAATAAA+TGG 0.339304 1_4:+60921322 None:intergenic
GTTTCTACAACAGGCCTTCC+TGG 0.339830 1_4:+60920581 None:intergenic
GCCTTCTGAAGAGGAAGCTT+TGG 0.354245 1_4:-60921014 Msa0175100:CDS
GACCGTTGATTTCTACTAGA+AGG 0.354808 1_4:-60920511 Msa0175100:CDS
TCCTTTGAATGGTAAAGAAA+TGG 0.358874 1_4:-60920705 Msa0175100:CDS
GGAAGGCCTGTTGTAGAAAC+TGG 0.360206 1_4:-60920578 Msa0175100:CDS
ATCTTAATTTGTGCTCCATA+TGG 0.366503 1_4:+60918971 None:intergenic
GGCTCTTTCGTCGGATTGCT+TGG 0.369347 1_4:-60920490 Msa0175100:CDS
ACAACAAAATCACCAGGTTT+TGG 0.371047 1_4:+60920815 None:intergenic
TTCTTTGGTGCTTAGTGAAA+AGG 0.372446 1_4:-60919185 Msa0175100:CDS
TCTTGTCACAAGCTCAGCTT+TGG 0.373548 1_4:+60919403 None:intergenic
ATGAAGCACTTTATGCAAAC+TGG 0.377438 1_4:-60917283 Msa0175100:CDS
TAAAACCTCAGCAAACAAAA+TGG 0.381979 1_4:+60920553 None:intergenic
AACTTGAATTTCATCATCAA+TGG 0.393250 1_4:+60921090 None:intergenic
AAGTGTCAACATGTAATTAG+AGG 0.394387 1_4:+60916805 None:intergenic
TATAGATAGATTCATATAGT+TGG 0.399544 1_4:-60916899 Msa0175100:three_prime_UTR
TATGGAGCACAAATTAAGAT+TGG 0.400360 1_4:-60918968 Msa0175100:CDS
AAAGTCCAGGTTCACTTTCA+AGG 0.415620 1_4:+60917521 None:intergenic
ATTGTTCTCCTATGTTGTTT+GGG 0.417926 1_4:-60917073 Msa0175100:three_prime_UTR
TCCATCTCAACTTCCAAAAC+AGG 0.419736 1_4:+60921046 None:intergenic
CACTTTATGCAAACTGGAAG+TGG 0.420539 1_4:-60917277 Msa0175100:CDS
AAGGAAGTGCTTCCTTTGAA+TGG 0.425729 1_4:-60920716 Msa0175100:CDS
CGGCAAAGCACTAGTTGGTA+AGG 0.432883 1_4:+60917313 None:intergenic
ATGGTTCCAGTTTCTACAAC+AGG 0.436694 1_4:+60920572 None:intergenic
GGAGTGGAAAGAACAATATT+GGG 0.445067 1_4:+60921223 None:intergenic
AAAAGAAGGAGAAGATAAGA+AGG 0.446272 1_4:-60920858 Msa0175100:CDS
AGATAATGAGGTATTAGAAC+TGG 0.450849 1_4:-60920936 Msa0175100:CDS
AGAATTACAGAGTGGAATAC+TGG 0.452658 1_4:-60919549 Msa0175100:CDS
TCTTTGGTGCTTAGTGAAAA+GGG 0.453525 1_4:-60919184 Msa0175100:CDS
TGCTTGGCATCGAGTGAGGC+AGG 0.461627 1_4:-60920474 Msa0175100:intron
GCTTAGTGAAAAGGGAGCTT+GGG 0.468410 1_4:-60919176 Msa0175100:intron
CTCCGTTGATGAGAAGGTTA+AGG 0.469591 1_4:-60917898 Msa0175100:CDS
TGCTTAGTGAAAAGGGAGCT+TGG 0.478307 1_4:-60919177 Msa0175100:CDS
GAGGTTTCAAGTGATTTAGC+TGG 0.478592 1_4:-60921118 Msa0175100:CDS
CTTAAATGGCATGTCTGCCA+TGG 0.480958 1_4:+60917153 None:intergenic
ATTGTTCTTTCCACTCCTCA+TGG 0.483191 1_4:-60921217 Msa0175100:CDS
TTTACGGTTCAAGGGAAGAT+GGG 0.487575 1_4:-60920644 Msa0175100:CDS
ATGGAGCACAAATTAAGATT+GGG 0.487763 1_4:-60918967 Msa0175100:CDS
ATTCAAAGGAAGCACTTCCT+TGG 0.487899 1_4:+60920718 None:intergenic
TGATTTCTTGCTGAAAATGA+AGG 0.488495 1_4:+60921267 None:intergenic
GGAGTTGCAGTTGAAGCATA+AGG 0.494734 1_4:+60921288 None:intergenic
TCAAACGGCAAAGCACTAGT+TGG 0.498148 1_4:+60917308 None:intergenic
ATGAGTGCAGCATCAGTGCC+AGG 0.498555 1_4:-60920599 Msa0175100:CDS
CTTGTCACAAGCTCAGCTTT+GGG 0.498895 1_4:+60919404 None:intergenic
TTACAACTTGGATACTTCAC+AGG 0.503212 1_4:+60916717 None:intergenic
CTGGTGAGCCATGCAACATA+AGG 0.507604 1_4:+60917178 None:intergenic
GCCGCCCTTGAAAGTGAACC+TGG 0.508285 1_4:-60917526 Msa0175100:CDS
CTACTAGAAGGCTCTTTCGT+CGG 0.515227 1_4:-60920499 Msa0175100:CDS
GAATAAATGGCATCTTTGTA+TGG 0.523040 1_4:+60921335 None:intergenic
TCCATTTCTTTACCATTCAA+AGG 0.525558 1_4:+60920704 None:intergenic
AAGTCCAGGTTCACTTTCAA+GGG 0.528592 1_4:+60917522 None:intergenic
AGACCTCAATCGTTGTTAGC+AGG 0.530608 1_4:+60919523 None:intergenic
CGTACTCTCCGTTGATGAGA+AGG 0.532205 1_4:-60917904 Msa0175100:CDS
AACAAGCTTGATGTAAATGT+TGG 0.533528 1_4:-60920767 Msa0175100:CDS
GTTTGGGCACATACAGAGCA+TGG 0.536874 1_4:-60917057 Msa0175100:three_prime_UTR
TCAGAGAACCTTATGTTGCA+TGG 0.538644 1_4:-60917186 Msa0175100:three_prime_UTR
GCTTCACCACTCTGAGGTCG+AGG 0.541768 1_4:+60917111 None:intergenic
ATTTATGGAAGCTGATATGA+TGG 0.544898 1_4:-60917390 Msa0175100:CDS
GCCAAAGCTTCCTCTTCAGA+AGG 0.545333 1_4:+60921013 None:intergenic
TTTGGGCACATACAGAGCAT+GGG 0.547339 1_4:-60917056 Msa0175100:three_prime_UTR
AATGTTGGAGCAGATTTACT+AGG 0.550877 1_4:-60920752 Msa0175100:CDS
TTTGTAGAGACAATAGGAGG+AGG 0.554599 1_4:+60917344 None:intergenic
TCTGTAATTCTAACCTCGAT+AGG 0.555447 1_4:+60919561 None:intergenic
TAGTAAAGATTATGTGAAGG+AGG 0.556511 1_4:-60920966 Msa0175100:CDS
TTTAGAGCAAAACTTGAAGT+GGG 0.556785 1_4:+60921156 None:intergenic
TGGCATGTCTGCCATGGGAC+TGG 0.560834 1_4:+60917159 None:intergenic
ATAATGAACACCTAAAATGG+AGG 0.565677 1_4:+60916919 None:intergenic
ACGTGATTACAATTACAACT+TGG 0.567461 1_4:+60916705 None:intergenic
GGAGGTTGACGAAGATAATG+AGG 0.568457 1_4:-60920948 Msa0175100:CDS
TAATGAACACCTAAAATGGA+GGG 0.568819 1_4:+60916920 None:intergenic
TTAAATGGCATGTCTGCCAT+GGG 0.575229 1_4:+60917154 None:intergenic
ACAAGAGAAGCCTTCTGAAG+AGG 0.577741 1_4:-60921023 Msa0175100:CDS
TCACAAGCTCAGCTTTGGGT+AGG 0.577775 1_4:+60919408 None:intergenic
ATAGTTGGATGTAAATTCTG+AGG 0.578855 1_4:-60916884 Msa0175100:three_prime_UTR
AACAATTGAACCATGAGGAG+TGG 0.579544 1_4:+60921207 None:intergenic
TGTATGTGCCCAAACAACAT+AGG 0.587861 1_4:+60917065 None:intergenic
GAAAAGGCATATCTTCGTGA+AGG 0.597129 1_4:-60919028 Msa0175100:CDS
TCAACTTCCAAAACAGGTGA+CGG 0.599928 1_4:+60921052 None:intergenic
GAGTACTATGAGCCAAAACC+TGG 0.601150 1_4:-60920827 Msa0175100:CDS
AGCCTTAACCTTCTCATCAA+CGG 0.602910 1_4:+60917896 None:intergenic
TGCATGGCTCACCAGTCCCA+TGG 0.604849 1_4:-60917170 Msa0175100:three_prime_UTR
TCCAGGTTCACTTTCAAGGG+CGG 0.605234 1_4:+60917525 None:intergenic
AGGTAGTAAAGATTATGTGA+AGG 0.610501 1_4:-60920969 Msa0175100:CDS
GTGCAGCATCAGTGCCAGGA+AGG 0.618214 1_4:-60920595 Msa0175100:CDS
AGGTTAAGGCTCTTGTTGTG+AGG 0.619077 1_4:-60917884 Msa0175100:CDS
GGATTGCTTGGCATCGAGTG+AGG 0.619176 1_4:-60920478 Msa0175100:CDS
AATGAACACCTAAAATGGAG+GGG 0.622669 1_4:+60916921 None:intergenic
TAGTTGGATGTAAATTCTGA+GGG 0.623285 1_4:-60916883 Msa0175100:three_prime_UTR
GGCAAAGCACTAGTTGGTAA+GGG 0.627922 1_4:+60917314 None:intergenic
AAGCATAAGGAAGAATTACA+AGG 0.632192 1_4:+60921301 None:intergenic
TGGCCTGCTAACAACGATTG+AGG 0.632735 1_4:-60919526 Msa0175100:intron
AAAAGGCATATCTTCGTGAA+GGG 0.634782 1_4:-60919027 Msa0175100:CDS
TTTGTTATGTGATGTGAACA+AGG 0.648082 1_4:-60920678 Msa0175100:CDS
AGCCTTCTAGTAGAAATCAA+CGG 0.649854 1_4:+60920509 None:intergenic
TTGGGCACATACAGAGCATG+GGG 0.650861 1_4:-60917055 Msa0175100:three_prime_UTR
AGATTGGGAAAACTAACAGA+AGG 0.651020 1_4:-60918952 Msa0175100:intron
TCACCACTCTGAGGTCGAGG+AGG 0.652213 1_4:+60917114 None:intergenic
ACTAGGTACAATGTTAACCA+AGG 0.652350 1_4:-60920735 Msa0175100:CDS
TTAGAAACAATTGAACCATG+AGG 0.654840 1_4:+60921202 None:intergenic
ATGTGATGTGAACAAGGATG+CGG 0.659417 1_4:-60920672 Msa0175100:CDS
ACACCAACAACAAAATCACC+AGG 0.669393 1_4:+60920809 None:intergenic
TACAACTTGGATACTTCACA+GGG 0.672103 1_4:+60916718 None:intergenic
ACAGCTCAATGAACCTATCG+AGG 0.680086 1_4:-60919574 Msa0175100:CDS
AAAAGATGGTGTGAGTGATG+AGG 0.692251 1_4:-60920900 Msa0175100:CDS
ATTACAGAGTGGAATACTGG+TGG 0.692449 1_4:-60919546 Msa0175100:CDS
GAGCCTCCTCGACCTCAGAG+TGG 0.703238 1_4:-60917117 Msa0175100:three_prime_UTR
TCCCCGATAAAATCTCTCTG+AGG 0.706627 1_4:-60917854 Msa0175100:intron
TCGAGGTTAGAATTACAGAG+TGG 0.742925 1_4:-60919557 Msa0175100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAATAAAAAAAAA+AGG + chr1_4:60921117-60921136 None:intergenic 0.0%
!! AATTTCAATATTATAAATCA+AGG - chr1_4:60918190-60918209 Msa0175100:intron 10.0%
!! ATACTGAAATTTAGTAAAAA+AGG - chr1_4:60918317-60918336 Msa0175100:intron 15.0%
!!! AAATTGAGTTATATTTTCAA+GGG + chr1_4:60919170-60919189 None:intergenic 15.0%
!!! AAGATTAATGTTTTAAAAAC+CGG - chr1_4:60919492-60919511 Msa0175100:intron 15.0%
!!! TAAGTTTTAGTTGTTAATTT+TGG - chr1_4:60920024-60920043 Msa0175100:intron 15.0%
!!! CCTTTGAAAAACTTAAAAAA+AGG + chr1_4:60917081-60917100 None:intergenic 20.0%
!!! CCTTTTTTTAAGTTTTTCAA+AGG - chr1_4:60917078-60917097 Msa0175100:three_prime_UTR 20.0%
!!! TTTGTCATTTCATATCAAAT+TGG - chr1_4:60918267-60918286 Msa0175100:intron 20.0%
!!! AATCTGATCTTTTTAATGTT+TGG - chr1_4:60918460-60918479 Msa0175100:intron 20.0%
!!! ATCTGATCTTTTTAATGTTT+GGG - chr1_4:60918461-60918480 Msa0175100:intron 20.0%
!!! AACATAAATTTCAAGTCAAT+GGG + chr1_4:60918572-60918591 None:intergenic 20.0%
!! ATTAGCAAGAGATTATTATA+AGG + chr1_4:60918792-60918811 None:intergenic 20.0%
!!! ATATGGAAAGATCTTTTTTA+CGG + chr1_4:60919082-60919101 None:intergenic 20.0%
!!! CAAATTGAGTTATATTTTCA+AGG + chr1_4:60919171-60919190 None:intergenic 20.0%
!!! TGCATCTAAAACTTTTTTAA+TGG - chr1_4:60919389-60919408 Msa0175100:CDS 20.0%
!!! GCATCTAAAACTTTTTTAAT+GGG - chr1_4:60919390-60919409 Msa0175100:CDS 20.0%
!!! GAAATTTGGCATAATTTTAT+AGG - chr1_4:60919781-60919800 Msa0175100:intron 20.0%
!!! ACTTTTTCTTTCAAATAAAG+AGG - chr1_4:60920564-60920583 Msa0175100:CDS 20.0%
!! TCCTATTAAAATTTCTTCTA+TGG - chr1_4:60920607-60920626 Msa0175100:CDS 20.0%
!!! ACCATAGAAGAAATTTTAAT+AGG + chr1_4:60920611-60920630 None:intergenic 20.0%
!!! CTTCATATTTTCTTCTTAAA+TGG + chr1_4:60920931-60920950 None:intergenic 20.0%
!! TATAGATAGATTCATATAGT+TGG - chr1_4:60921168-60921187 Msa0175100:CDS 20.0%
!! AATATCAAAATTTCAGTGAT+TGG + chr1_4:60921388-60921407 None:intergenic 20.0%
!!! TTCAAGTTTTGCTCTAAAAA+TGG - chr1_4:60916916-60916935 Msa0175100:three_prime_UTR 25.0%
! AACTTGAATTTCATCATCAA+TGG + chr1_4:60916980-60916999 None:intergenic 25.0%
! AAAGAAGATGAAGAAAAAGA+AGG - chr1_4:60917195-60917214 Msa0175100:three_prime_UTR 25.0%
! TACTAAACTAAACATTGGAT+AGG + chr1_4:60917648-60917667 None:intergenic 25.0%
! ACATCTACTAAACTAAACAT+TGG + chr1_4:60917653-60917672 None:intergenic 25.0%
!! TCCATCTTTAATTTATGAGT+CGG - chr1_4:60917688-60917707 Msa0175100:intron 25.0%
!! TATTTAGCAAACAGTAGTTT+TGG - chr1_4:60917747-60917766 Msa0175100:intron 25.0%
! TAATCAATGGAGAACAAATA+TGG + chr1_4:60917793-60917812 None:intergenic 25.0%
! GATAAACATTTATCCAAACA+GGG + chr1_4:60917864-60917883 None:intergenic 25.0%
! TGATAAACATTTATCCAAAC+AGG + chr1_4:60917865-60917884 None:intergenic 25.0%
! TCATTTCATATCAAATTGGT+AGG - chr1_4:60918271-60918290 Msa0175100:intron 25.0%
! CATTTCATATCAAATTGGTA+GGG - chr1_4:60918272-60918291 Msa0175100:intron 25.0%
!! TCTGATCTTTTTAATGTTTG+GGG - chr1_4:60918462-60918481 Msa0175100:intron 25.0%
!! GAACATAAATTTCAAGTCAA+TGG + chr1_4:60918573-60918592 None:intergenic 25.0%
! ATTTACTCAAATAATGACAC+AGG + chr1_4:60918595-60918614 None:intergenic 25.0%
!! TGCTTATTTCTTCATGAATT+CGG - chr1_4:60918614-60918633 Msa0175100:intron 25.0%
! AGATGAAGCAAAAAATTCTT+TGG - chr1_4:60918867-60918886 Msa0175100:intron 25.0%
! GTAAAAAAGATCTTTCCATA+TGG - chr1_4:60919081-60919100 Msa0175100:intron 25.0%
! GAAAATATAGATAATGCACT+AGG - chr1_4:60919212-60919231 Msa0175100:CDS 25.0%
!! TCAAAGTTTAACAATCGTTT+TGG + chr1_4:60919254-60919273 None:intergenic 25.0%
! CGATTGTTAAACTTTGAATT+TGG - chr1_4:60919257-60919276 Msa0175100:intron 25.0%
! TTGTTAAACTTTGAATTTGG+TGG - chr1_4:60919260-60919279 Msa0175100:intron 25.0%
! TTAACTCTATAGTAATGAAC+TGG - chr1_4:60919300-60919319 Msa0175100:intron 25.0%
! ACTATATAGATAACAATGAC+AGG + chr1_4:60919326-60919345 None:intergenic 25.0%
! TGTCATTGTTATCTATATAG+TGG - chr1_4:60919325-60919344 Msa0175100:intron 25.0%
! TTGTATATAAAAAGCAAGCA+GGG + chr1_4:60919725-60919744 None:intergenic 25.0%
!! TATGCCAAATTTCTCATTTT+GGG + chr1_4:60919774-60919793 None:intergenic 25.0%
!! TTATGCCAAATTTCTCATTT+TGG + chr1_4:60919775-60919794 None:intergenic 25.0%
!! TTGGCATAATTTTATAGGTA+TGG - chr1_4:60919786-60919805 Msa0175100:intron 25.0%
! AGAAAATTATGCAGAAACAA+GGG + chr1_4:60919854-60919873 None:intergenic 25.0%
! AAGAAAATTATGCAGAAACA+AGG + chr1_4:60919855-60919874 None:intergenic 25.0%
!!! TACTATCTTTGTTTCTATCA+TGG - chr1_4:60919875-60919894 Msa0175100:intron 25.0%
!! TAACTTCCTTTTGTAATTGT+TGG - chr1_4:60920253-60920272 Msa0175100:intron 25.0%
!! AACTTCCTTTTGTAATTGTT+GGG - chr1_4:60920254-60920273 Msa0175100:intron 25.0%
! TTGTTTATGTTAACCAAACA+AGG + chr1_4:60920307-60920326 None:intergenic 25.0%
! TTAACATAAACAAATGAGTC+AGG - chr1_4:60920314-60920333 Msa0175100:intron 25.0%
!! AATCAAATTTTGAATCTTGG+AGG + chr1_4:60920389-60920408 None:intergenic 25.0%
!! ACGAATCAAATTTTGAATCT+TGG + chr1_4:60920392-60920411 None:intergenic 25.0%
! TTATTTGAAAGAAAAAGTCC+AGG + chr1_4:60920562-60920581 None:intergenic 25.0%
!!! TAAAGTGCTTCATTTTCAAA+CGG + chr1_4:60920777-60920796 None:intergenic 25.0%
! GCAACAAGAAAGAAATTTAA+AGG + chr1_4:60921095-60921114 None:intergenic 25.0%
! TCTATAATGAACACCTAAAA+TGG + chr1_4:60921154-60921173 None:intergenic 25.0%
!!! CATTATCTTTGGTTTTCAGT+TGG + chr1_4:60916697-60916716 None:intergenic 30.0%
! ACTGAACAAAGCATTATCTT+TGG + chr1_4:60916708-60916727 None:intergenic 30.0%
GAATAAATGGCATCTTTGTA+TGG + chr1_4:60916735-60916754 None:intergenic 30.0%
GGATGAAGTTGAAGAATAAA+TGG + chr1_4:60916748-60916767 None:intergenic 30.0%
AAGCATAAGGAAGAATTACA+AGG + chr1_4:60916769-60916788 None:intergenic 30.0%
TGATTTCTTGCTGAAAATGA+AGG + chr1_4:60916803-60916822 None:intergenic 30.0%
TTAGAAACAATTGAACCATG+AGG + chr1_4:60916868-60916887 None:intergenic 30.0%
! TTTAGAGCAAAACTTGAAGT+GGG + chr1_4:60916914-60916933 None:intergenic 30.0%
!!! TTTTAGAGCAAAACTTGAAG+TGG + chr1_4:60916915-60916934 None:intergenic 30.0%
!!! AAGTTTTGCTCTAAAAATGG+TGG - chr1_4:60916919-60916938 Msa0175100:three_prime_UTR 30.0%
!!! AGTTTTGCTCTAAAAATGGT+GGG - chr1_4:60916920-60916939 Msa0175100:three_prime_UTR 30.0%
AGGTAGTAAAGATTATGTGA+AGG - chr1_4:60917098-60917117 Msa0175100:three_prime_UTR 30.0%
TAGTAAAGATTATGTGAAGG+AGG - chr1_4:60917101-60917120 Msa0175100:three_prime_UTR 30.0%
! AGATAATGAGGTATTAGAAC+TGG - chr1_4:60917131-60917150 Msa0175100:three_prime_UTR 30.0%
GAAGTTTCTGAACAAAAAGA+TGG - chr1_4:60917153-60917172 Msa0175100:three_prime_UTR 30.0%
AAAAGAAGGAGAAGATAAGA+AGG - chr1_4:60917209-60917228 Msa0175100:three_prime_UTR 30.0%
AACAAGCTTGATGTAAATGT+TGG - chr1_4:60917300-60917319 Msa0175100:CDS 30.0%
TCCTTTGAATGGTAAAGAAA+TGG - chr1_4:60917362-60917381 Msa0175100:CDS 30.0%
TCCATTTCTTTACCATTCAA+AGG + chr1_4:60917366-60917385 None:intergenic 30.0%
! TTTGTTATGTGATGTGAACA+AGG - chr1_4:60917389-60917408 Msa0175100:CDS 30.0%
TAAAACCTCAGCAAACAAAA+TGG + chr1_4:60917517-60917536 None:intergenic 30.0%
!! ATTTTGTTTGCTGAGGTTTT+AGG - chr1_4:60917516-60917535 Msa0175100:CDS 30.0%
AACATTGGATAGGAGTAAAA+AGG + chr1_4:60917638-60917657 None:intergenic 30.0%
AAAGATGGAAGATGAAATCT+TGG + chr1_4:60917677-60917696 None:intergenic 30.0%
TCCGACTCATAAATTAAAGA+TGG + chr1_4:60917692-60917711 None:intergenic 30.0%
ATGGTCTCATGTGTATATTT+AGG + chr1_4:60917774-60917793 None:intergenic 30.0%
AATTTGGCATTGCTAATCAA+TGG + chr1_4:60917806-60917825 None:intergenic 30.0%
ATTGATTAGCAATGCCAAAT+TGG - chr1_4:60917805-60917824 Msa0175100:intron 30.0%
!! AATGACTTGGTGTATATGTA+TGG - chr1_4:60918218-60918237 Msa0175100:intron 30.0%
!! ACGGAGTATTGATAAGATAA+TGG + chr1_4:60918375-60918394 None:intergenic 30.0%
AGGATTACTAACAGTGATAA+CGG + chr1_4:60918394-60918413 None:intergenic 30.0%
TCATTAGACTTTACAGAGAT+AGG + chr1_4:60918414-60918433 None:intergenic 30.0%
! GAAAATGTAAGTTGCAGTTT+TGG - chr1_4:60918711-60918730 Msa0175100:intron 30.0%
GAATGGAAAAAAATTGTCCT+TGG + chr1_4:60918750-60918769 None:intergenic 30.0%
! ATACTTGATCATGATGATGT+AGG - chr1_4:60918810-60918829 Msa0175100:intron 30.0%
GCAAGAAAGTAACGAAAAAT+AGG + chr1_4:60918942-60918961 None:intergenic 30.0%
!! ATCTTAATTTGTGCTCCATA+TGG + chr1_4:60919099-60919118 None:intergenic 30.0%
TATGGAGCACAAATTAAGAT+TGG - chr1_4:60919099-60919118 Msa0175100:intron 30.0%
ATGGAGCACAAATTAAGATT+GGG - chr1_4:60919100-60919119 Msa0175100:intron 30.0%
!! TCAATTTGAGTTCTTTTCGA+TGG - chr1_4:60919183-60919202 Msa0175100:CDS 30.0%
CAATTACAGCAGCAAATAAA+TGG + chr1_4:60919371-60919390 None:intergenic 30.0%
AACCAATTACATATCCCTAA+GGG + chr1_4:60919445-60919464 None:intergenic 30.0%
AAACCAATTACATATCCCTA+AGG + chr1_4:60919446-60919465 None:intergenic 30.0%
TTAGGGATATGTAATTGGTT+TGG - chr1_4:60919445-60919464 Msa0175100:intron 30.0%
!! TATGTAATTGGTTTGGTATC+AGG - chr1_4:60919452-60919471 Msa0175100:intron 30.0%
! ATAGATTTCAATAGCCCTTT+TGG - chr1_4:60919560-60919579 Msa0175100:CDS 30.0%
GTTGTATATAAAAAGCAAGC+AGG + chr1_4:60919726-60919745 None:intergenic 30.0%
TCTTCCCAAAATGAGAAATT+TGG - chr1_4:60919767-60919786 Msa0175100:intron 30.0%
ATAACAACGAAAAGGTAGTA+GGG + chr1_4:60919927-60919946 None:intergenic 30.0%
AATGCCAGCTTGATAAAATA+TGG + chr1_4:60920061-60920080 None:intergenic 30.0%
! TTACCTCAGAGAGATTTTAT+CGG + chr1_4:60920219-60920238 None:intergenic 30.0%
ATACACCCAACAATTACAAA+AGG + chr1_4:60920262-60920281 None:intergenic 30.0%
ATCAACAACATGAATGTAGT+TGG + chr1_4:60920491-60920510 None:intergenic 30.0%
!! GATCATACAGAGAGTATTTA+TGG - chr1_4:60920662-60920681 Msa0175100:CDS 30.0%
ATTTATGGAAGCTGATATGA+TGG - chr1_4:60920677-60920696 Msa0175100:CDS 30.0%
! AATTTTGTAGAGACAATAGG+AGG + chr1_4:60920729-60920748 None:intergenic 30.0%
! CCTAATTTTGTAGAGACAAT+AGG + chr1_4:60920732-60920751 None:intergenic 30.0%
CCTATTGTCTCTACAAAATT+AGG - chr1_4:60920729-60920748 Msa0175100:CDS 30.0%
!!! TGAACAGTTTTTTTTCATGC+TGG + chr1_4:60920845-60920864 None:intergenic 30.0%
! ATTGTTCTCCTATGTTGTTT+GGG - chr1_4:60920994-60921013 Msa0175100:CDS 30.0%
TAATGAACACCTAAAATGGA+GGG + chr1_4:60921150-60921169 None:intergenic 30.0%
ATAATGAACACCTAAAATGG+AGG + chr1_4:60921151-60921170 None:intergenic 30.0%
ATAGTTGGATGTAAATTCTG+AGG - chr1_4:60921183-60921202 Msa0175100:CDS 30.0%
TAGTTGGATGTAAATTCTGA+GGG - chr1_4:60921184-60921203 Msa0175100:CDS 30.0%
AAGTGTCAACATGTAATTAG+AGG + chr1_4:60921265-60921284 None:intergenic 30.0%
ACGTGATTACAATTACAACT+TGG + chr1_4:60921365-60921384 None:intergenic 30.0%
GGAGTGGAAAGAACAATATT+GGG + chr1_4:60916847-60916866 None:intergenic 35.0%
AGGAGTGGAAAGAACAATAT+TGG + chr1_4:60916848-60916867 None:intergenic 35.0%
!! TAAAAATGGTGGGTTTGATG+AGG - chr1_4:60916930-60916949 Msa0175100:three_prime_UTR 35.0%
! ACAACAAAATCACCAGGTTT+TGG + chr1_4:60917255-60917274 None:intergenic 35.0%
!! AAACCTGGTGATTTTGTTGT+TGG - chr1_4:60917255-60917274 Msa0175100:exon 35.0%
AATGTTGGAGCAGATTTACT+AGG - chr1_4:60917315-60917334 Msa0175100:CDS 35.0%
ACTAGGTACAATGTTAACCA+AGG - chr1_4:60917332-60917351 Msa0175100:CDS 35.0%
!! GTTTTAGGTAGAACACTTAG+TGG - chr1_4:60917531-60917550 Msa0175100:CDS 35.0%
AGCCTTCTAGTAGAAATCAA+CGG + chr1_4:60917561-60917580 None:intergenic 35.0%
! AAGTTTTCCTGAAGAGCTTA+TGG - chr1_4:60917971-60917990 Msa0175100:intron 35.0%
! TAAGCACTTGTTAGACTGTT+TGG + chr1_4:60918027-60918046 None:intergenic 35.0%
AGTTAATCCAAAGTCCAAAC+AGG - chr1_4:60918068-60918087 Msa0175100:intron 35.0%
GATTGCATTGTCTTAGTTTC+TGG - chr1_4:60918113-60918132 Msa0175100:intron 35.0%
ATGGCTAAAATGTGACTTGA+AGG - chr1_4:60918144-60918163 Msa0175100:intron 35.0%
AATCAAGGACTTGAATGACT+TGG - chr1_4:60918205-60918224 Msa0175100:intron 35.0%
!!! ACAACAGCAGATGTCATTTT+TGG + chr1_4:60918248-60918267 None:intergenic 35.0%
TCTGTAATTCTAACCTCGAT+AGG + chr1_4:60918509-60918528 None:intergenic 35.0%
AGAATTACAGAGTGGAATAC+TGG - chr1_4:60918518-60918537 Msa0175100:intron 35.0%
TTCATGAATTCGGATGTGTA+GGG - chr1_4:60918624-60918643 Msa0175100:intron 35.0%
AGTAACTACACTGTTCAGAA+TGG + chr1_4:60918767-60918786 None:intergenic 35.0%
! TTGATCATGATGATGTAGGT+GGG - chr1_4:60918814-60918833 Msa0175100:intron 35.0%
!! TTCTTTGGTGCTTAGTGAAA+AGG - chr1_4:60918882-60918901 Msa0175100:intron 35.0%
!! TCTTTGGTGCTTAGTGAAAA+GGG - chr1_4:60918883-60918902 Msa0175100:intron 35.0%
! AAAAGGCATATCTTCGTGAA+GGG - chr1_4:60919040-60919059 Msa0175100:intron 35.0%
AGATTGGGAAAACTAACAGA+AGG - chr1_4:60919115-60919134 Msa0175100:intron 35.0%
GATAATGCACTAGGAAAATC+AGG - chr1_4:60919221-60919240 Msa0175100:CDS 35.0%
ACAGCAGCAAATAAATGGAA+AGG + chr1_4:60919366-60919385 None:intergenic 35.0%
AAGGGCTATTGAAATCTATC+AGG + chr1_4:60919559-60919578 None:intergenic 35.0%
!! TTTCAATAGCCCTTTTGGTT+TGG - chr1_4:60919565-60919584 Msa0175100:CDS 35.0%
ACAAACCAAACCGTACTATT+CGG + chr1_4:60919675-60919694 None:intergenic 35.0%
!! TACGGTTTGGTTTGTTCAAT+GGG - chr1_4:60919680-60919699 Msa0175100:intron 35.0%
CATAACAACGAAAAGGTAGT+AGG + chr1_4:60919928-60919947 None:intergenic 35.0%
! CTACTACCTTTTCGTTGTTA+TGG - chr1_4:60919926-60919945 Msa0175100:intron 35.0%
CAGCTTGATAAAATATGGAC+AGG + chr1_4:60920056-60920075 None:intergenic 35.0%
! CTGTCCATATTTTATCAAGC+TGG - chr1_4:60920054-60920073 Msa0175100:intron 35.0%
AGGAATCCAACATGTTCATT+TGG + chr1_4:60920084-60920103 None:intergenic 35.0%
! TACCTCAGAGAGATTTTATC+GGG + chr1_4:60920218-60920237 None:intergenic 35.0%
TCAAGTCTTTCTGGGTTAAT+TGG - chr1_4:60920281-60920300 Msa0175100:intron 35.0%
! ATGAAGCACTTTATGCAAAC+TGG - chr1_4:60920784-60920803 Msa0175100:CDS 35.0%
CATTGTTCTCCTATGTTGTT+TGG - chr1_4:60920993-60921012 Msa0175100:CDS 35.0%
AATGAACACCTAAAATGGAG+GGG + chr1_4:60921149-60921168 None:intergenic 35.0%
TACAACTTGGATACTTCACA+GGG + chr1_4:60921352-60921371 None:intergenic 35.0%
TTACAACTTGGATACTTCAC+AGG + chr1_4:60921353-60921372 None:intergenic 35.0%
ATTGTTCTTTCCACTCCTCA+TGG - chr1_4:60916850-60916869 Msa0175100:three_prime_UTR 40.0%
AACAATTGAACCATGAGGAG+TGG + chr1_4:60916863-60916882 None:intergenic 40.0%
! GAGGTTTCAAGTGATTTAGC+TGG - chr1_4:60916949-60916968 Msa0175100:three_prime_UTR 40.0%
TCAACTTCCAAAACAGGTGA+CGG + chr1_4:60917018-60917037 None:intergenic 40.0%
!!! ACCTGTTTTGGAAGTTGAGA+TGG - chr1_4:60917020-60917039 Msa0175100:three_prime_UTR 40.0%
TCCATCTCAACTTCCAAAAC+AGG + chr1_4:60917024-60917043 None:intergenic 40.0%
AAAAGATGGTGTGAGTGATG+AGG - chr1_4:60917167-60917186 Msa0175100:three_prime_UTR 40.0%
ACACCAACAACAAAATCACC+AGG + chr1_4:60917261-60917280 None:intergenic 40.0%
!! GTTGTTGGTGTTGTTGTTTC+AGG - chr1_4:60917270-60917289 Msa0175100:CDS 40.0%
!! ATTCAAAGGAAGCACTTCCT+TGG + chr1_4:60917352-60917371 None:intergenic 40.0%
!! AAGGAAGTGCTTCCTTTGAA+TGG - chr1_4:60917351-60917370 Msa0175100:CDS 40.0%
ATGTGATGTGAACAAGGATG+CGG - chr1_4:60917395-60917414 Msa0175100:CDS 40.0%
! CAAGGATGCGGAGAATTTTA+CGG - chr1_4:60917407-60917426 Msa0175100:intron 40.0%
! CGGAGAATTTTACGGTTCAA+GGG - chr1_4:60917415-60917434 Msa0175100:intron 40.0%
! TTTTACGGTTCAAGGGAAGA+TGG - chr1_4:60917422-60917441 Msa0175100:intron 40.0%
TTTACGGTTCAAGGGAAGAT+GGG - chr1_4:60917423-60917442 Msa0175100:intron 40.0%
ATGGTTCCAGTTTCTACAAC+AGG + chr1_4:60917498-60917517 None:intergenic 40.0%
!! TGGAACCATTTTGTTTGCTG+AGG - chr1_4:60917509-60917528 Msa0175100:CDS 40.0%
!! GACCGTTGATTTCTACTAGA+AGG - chr1_4:60917556-60917575 Msa0175100:intron 40.0%
! ATGCCAAATTGGCTCTTCAA+TGG - chr1_4:60917816-60917835 Msa0175100:intron 40.0%
TCACCATTGAAGAGCCAATT+TGG + chr1_4:60917822-60917841 None:intergenic 40.0%
! TATCCAACTTTTGCCCTGTT+TGG - chr1_4:60917848-60917867 Msa0175100:intron 40.0%
TATCCAAACAGGGCAAAAGT+TGG + chr1_4:60917854-60917873 None:intergenic 40.0%
GACATATCCATAAGCTCTTC+AGG + chr1_4:60917981-60918000 None:intergenic 40.0%
TCTGACCCTTGAAAGACAAA+GGG + chr1_4:60918095-60918114 None:intergenic 40.0%
ATCTGACCCTTGAAAGACAA+AGG + chr1_4:60918096-60918115 None:intergenic 40.0%
!! TCACATTTTAGCCATCAAGC+TGG + chr1_4:60918139-60918158 None:intergenic 40.0%
!! GACTTGGTGTATATGTATGG+AGG - chr1_4:60918221-60918240 Msa0175100:intron 40.0%
TCGAGGTTAGAATTACAGAG+TGG - chr1_4:60918510-60918529 Msa0175100:intron 40.0%
ATTACAGAGTGGAATACTGG+TGG - chr1_4:60918521-60918540 Msa0175100:intron 40.0%
CTTCATGAATTCGGATGTGT+AGG - chr1_4:60918623-60918642 Msa0175100:intron 40.0%
! CTTGATCATGATGATGTAGG+TGG - chr1_4:60918813-60918832 Msa0175100:intron 40.0%
! TGATCATGATGATGTAGGTG+GGG - chr1_4:60918815-60918834 Msa0175100:intron 40.0%
! CATCGATGTTTCGAGTATCT+AGG - chr1_4:60918961-60918980 Msa0175100:CDS 40.0%
GTAAAACGACGTACAGGAAA+AGG - chr1_4:60919023-60919042 Msa0175100:CDS 40.0%
! GAAAAGGCATATCTTCGTGA+AGG - chr1_4:60919039-60919058 Msa0175100:intron 40.0%
! GAGTTCTTTTCGATGGATGA+TGG - chr1_4:60919190-60919209 Msa0175100:CDS 40.0%
AATGCACTAGGAAAATCAGG+CGG - chr1_4:60919224-60919243 Msa0175100:CDS 40.0%
AGCCCTTAGGGATATGTAAT+TGG - chr1_4:60919440-60919459 Msa0175100:intron 40.0%
AAATCTATCAGGCACCTAAC+TGG + chr1_4:60919548-60919567 None:intergenic 40.0%
AAACCAAACCGTACTATTCG+GGG + chr1_4:60919673-60919692 None:intergenic 40.0%
CAAACCAAACCGTACTATTC+GGG + chr1_4:60919674-60919693 None:intergenic 40.0%
!! GTACGGTTTGGTTTGTTCAA+TGG - chr1_4:60919679-60919698 Msa0175100:intron 40.0%
!! GTTTGGTTTGTTCAATGGGA+TGG - chr1_4:60919684-60919703 Msa0175100:intron 40.0%
ATGCAGCCATAACAACGAAA+AGG + chr1_4:60919935-60919954 None:intergenic 40.0%
ATGGCTGCATTGCTGTAAAT+AGG - chr1_4:60919945-60919964 Msa0175100:intron 40.0%
GGCATTCCAAATGAACATGT+TGG - chr1_4:60920075-60920094 Msa0175100:intron 40.0%
ACATGTTGGATTCCTTTCAG+TGG - chr1_4:60920089-60920108 Msa0175100:intron 40.0%
CATGTTGGATTCCTTTCAGT+GGG - chr1_4:60920090-60920109 Msa0175100:intron 40.0%
AGCCTTAACCTTCTCATCAA+CGG + chr1_4:60920174-60920193 None:intergenic 40.0%
! ACCTCAGAGAGATTTTATCG+GGG + chr1_4:60920217-60920236 None:intergenic 40.0%
TTGGGTGTATCAAGTCTTTC+TGG - chr1_4:60920272-60920291 Msa0175100:intron 40.0%
TGGGTGTATCAAGTCTTTCT+GGG - chr1_4:60920273-60920292 Msa0175100:intron 40.0%
! TCTTGGAGGATTTTCACGTT+AGG + chr1_4:60920375-60920394 None:intergenic 40.0%
!! ATGTAGTCGAGCTCTAAGAA+CGG - chr1_4:60920412-60920431 Msa0175100:intron 40.0%
TCTAAGAACGGTTCTTCTAC+AGG - chr1_4:60920424-60920443 Msa0175100:intron 40.0%
AAGTCCAGGTTCACTTTCAA+GGG + chr1_4:60920548-60920567 None:intergenic 40.0%
AAAGTCCAGGTTCACTTTCA+AGG + chr1_4:60920549-60920568 None:intergenic 40.0%
TTTGTAGAGACAATAGGAGG+AGG + chr1_4:60920726-60920745 None:intergenic 40.0%
CACTTTATGCAAACTGGAAG+TGG - chr1_4:60920790-60920809 Msa0175100:CDS 40.0%
TCAGAGAACCTTATGTTGCA+TGG - chr1_4:60920881-60920900 Msa0175100:CDS 40.0%
TTAAATGGCATGTCTGCCAT+GGG + chr1_4:60920916-60920935 None:intergenic 40.0%
AAAAAAGCTTCACCACTCTG+AGG + chr1_4:60920965-60920984 None:intergenic 40.0%
TGTATGTGCCCAAACAACAT+AGG + chr1_4:60921005-60921024 None:intergenic 40.0%
! GCATGGGGCTATAAAGTATT+TGG - chr1_4:60921027-60921046 Msa0175100:CDS 40.0%
! AGTTTCTTCCCCTCCATTTT+AGG - chr1_4:60921138-60921157 Msa0175100:CDS 40.0%
GGAGTTGCAGTTGAAGCATA+AGG + chr1_4:60916782-60916801 None:intergenic 45.0%
! ACAAGAGAAGCCTTCTGAAG+AGG - chr1_4:60917044-60917063 Msa0175100:three_prime_UTR 45.0%
GGAGGTTGACGAAGATAATG+AGG - chr1_4:60917119-60917138 Msa0175100:three_prime_UTR 45.0%
GAGTACTATGAGCCAAAACC+TGG - chr1_4:60917240-60917259 Msa0175100:exon 45.0%
! GCGGAGAATTTTACGGTTCA+AGG - chr1_4:60917414-60917433 Msa0175100:intron 45.0%
CTACTAGAAGGCTCTTTCGT+CGG - chr1_4:60917568-60917587 Msa0175100:intron 45.0%
CTGACCCTTGAAAGACAAAG+GGG + chr1_4:60918094-60918113 None:intergenic 45.0%
!! TTAGTTTCTGGCCAGCTTGA+TGG - chr1_4:60918125-60918144 Msa0175100:intron 45.0%
ACAGCTCAATGAACCTATCG+AGG - chr1_4:60918493-60918512 Msa0175100:intron 45.0%
AGACCTCAATCGTTGTTAGC+AGG + chr1_4:60918547-60918566 None:intergenic 45.0%
CTTGTCACAAGCTCAGCTTT+GGG + chr1_4:60918666-60918685 None:intergenic 45.0%
TCTTGTCACAAGCTCAGCTT+TGG + chr1_4:60918667-60918686 None:intergenic 45.0%
TTGGAACGTTCTTCTTGCCA+AGG - chr1_4:60918730-60918749 Msa0175100:intron 45.0%
TGCTTAGTGAAAAGGGAGCT+TGG - chr1_4:60918890-60918909 Msa0175100:intron 45.0%
GCTTAGTGAAAAGGGAGCTT+GGG - chr1_4:60918891-60918910 Msa0175100:intron 45.0%
TGCTGTGTAAAACGACGTAC+AGG - chr1_4:60919017-60919036 Msa0175100:CDS 45.0%
! CGTGAAGGGACACTTTTAGA+CGG - chr1_4:60919054-60919073 Msa0175100:intron 45.0%
ACAGAAGGTGAGTGATTGCT+CGG - chr1_4:60919130-60919149 Msa0175100:intron 45.0%
! CTGACAGGTTTGCTCTATTC+CGG + chr1_4:60919514-60919533 None:intergenic 45.0%
TTGAGGACGCCAAACCAAAA+GGG + chr1_4:60919577-60919596 None:intergenic 45.0%
AAGCAGGGATTTAGGTCTTG+AGG + chr1_4:60919594-60919613 None:intergenic 45.0%
TTGAAGCGAAGCAGGGATTT+AGG + chr1_4:60919602-60919621 None:intergenic 45.0%
! AACTCGTTTGAAGCGAAGCA+GGG + chr1_4:60919609-60919628 None:intergenic 45.0%
TCCTACTATCTCCTAGAGAC+AGG - chr1_4:60919636-60919655 Msa0175100:intron 45.0%
CCTACTATCTCCTAGAGACA+GGG - chr1_4:60919637-60919656 Msa0175100:intron 45.0%
! CTCCGTTGATGAGAAGGTTA+AGG - chr1_4:60920169-60920188 Msa0175100:intron 45.0%
! AGGTTAAGGCTCTTGTTGTG+AGG - chr1_4:60920183-60920202 Msa0175100:intron 45.0%
TCCCCGATAAAATCTCTCTG+AGG - chr1_4:60920213-60920232 Msa0175100:intron 45.0%
!! CTGGGTTAATTGGCCTTGTT+TGG - chr1_4:60920291-60920310 Msa0175100:intron 45.0%
!! GGCAAAGCACTAGTTGGTAA+GGG + chr1_4:60920756-60920775 None:intergenic 45.0%
! TCAAACGGCAAAGCACTAGT+TGG + chr1_4:60920762-60920781 None:intergenic 45.0%
CTTAAATGGCATGTCTGCCA+TGG + chr1_4:60920917-60920936 None:intergenic 45.0%
TTTGGGCACATACAGAGCAT+GGG - chr1_4:60921011-60921030 Msa0175100:CDS 45.0%
! GAACAAGCCGTCACCTGTTT+TGG - chr1_4:60917008-60917027 Msa0175100:three_prime_UTR 50.0%
! GCCTTCTGAAGAGGAAGCTT+TGG - chr1_4:60917053-60917072 Msa0175100:three_prime_UTR 50.0%
GCCAAAGCTTCCTCTTCAGA+AGG + chr1_4:60917057-60917076 None:intergenic 50.0%
GTTTCTACAACAGGCCTTCC+TGG + chr1_4:60917489-60917508 None:intergenic 50.0%
GGAAGGCCTGTTGTAGAAAC+TGG - chr1_4:60917489-60917508 Msa0175100:intron 50.0%
AAAGGGGCCTGTTTGGACTT+TGG + chr1_4:60918078-60918097 None:intergenic 50.0%
GAAAGACAAAGGGGCCTGTT+TGG + chr1_4:60918085-60918104 None:intergenic 50.0%
ACAGGCCCCTTTGTCTTTCA+AGG - chr1_4:60918086-60918105 Msa0175100:intron 50.0%
CAGGCCCCTTTGTCTTTCAA+GGG - chr1_4:60918087-60918106 Msa0175100:intron 50.0%
TGGCCTGCTAACAACGATTG+AGG - chr1_4:60918541-60918560 Msa0175100:intron 50.0%
!! TCACAAGCTCAGCTTTGGGT+AGG + chr1_4:60918662-60918681 None:intergenic 50.0%
TGCTTTCTGCATGAGCCCTT+AGG - chr1_4:60919427-60919446 Msa0175100:intron 50.0%
GCTTTCTGCATGAGCCCTTA+GGG - chr1_4:60919428-60919447 Msa0175100:intron 50.0%
CGGAATAGAGCAAACCTGTC+AGG - chr1_4:60919512-60919531 Msa0175100:intron 50.0%
AGCAAACCTGTCAGGCATTC+AGG - chr1_4:60919520-60919539 Msa0175100:intron 50.0%
CAGGCATTCAGGAACCAGTT+AGG - chr1_4:60919531-60919550 Msa0175100:CDS 50.0%
CTTGAGGACGCCAAACCAAA+AGG + chr1_4:60919578-60919597 None:intergenic 50.0%
! CAACTCGTTTGAAGCGAAGC+AGG + chr1_4:60919610-60919629 None:intergenic 50.0%
! CCCTGTCTCTAGGAGATAGT+AGG + chr1_4:60919640-60919659 None:intergenic 50.0%
TCAGGGTTTACCCTGTCTCT+AGG + chr1_4:60919650-60919669 None:intergenic 50.0%
AACCCTGACCCCGAATAGTA+CGG - chr1_4:60919662-60919681 Msa0175100:intron 50.0%
AACCGTACTATTCGGGGTCA+GGG + chr1_4:60919667-60919686 None:intergenic 50.0%
AAACCGTACTATTCGGGGTC+AGG + chr1_4:60919668-60919687 None:intergenic 50.0%
TGACCCCGAATAGTACGGTT+TGG - chr1_4:60919667-60919686 Msa0175100:intron 50.0%
ACATGCAGCAACCCACTGAA+AGG + chr1_4:60920104-60920123 None:intergenic 50.0%
! CGTACTCTCCGTTGATGAGA+AGG - chr1_4:60920163-60920182 Msa0175100:intron 50.0%
TCCAGGTTCACTTTCAAGGG+CGG + chr1_4:60920545-60920564 None:intergenic 50.0%
! CGGCAAAGCACTAGTTGGTA+AGG + chr1_4:60920757-60920776 None:intergenic 50.0%
CTGGTGAGCCATGCAACATA+AGG + chr1_4:60920892-60920911 None:intergenic 50.0%
GTTTGGGCACATACAGAGCA+TGG - chr1_4:60921010-60921029 Msa0175100:CDS 50.0%
TTGGGCACATACAGAGCATG+GGG - chr1_4:60921012-60921031 Msa0175100:CDS 50.0%
ATGAGTGCAGCATCAGTGCC+AGG - chr1_4:60917468-60917487 Msa0175100:intron 55.0%
GGCTCTTTCGTCGGATTGCT+TGG - chr1_4:60917577-60917596 Msa0175100:intron 55.0%
! GGATTGCTTGGCATCGAGTG+AGG - chr1_4:60917589-60917608 Msa0175100:intron 55.0%
CTGGTTCCTGAATGCCTGAC+AGG + chr1_4:60919529-60919548 None:intergenic 55.0%
GTGCAGCATCAGTGCCAGGA+AGG - chr1_4:60917472-60917491 Msa0175100:intron 60.0%
! TGCTTGGCATCGAGTGAGGC+AGG - chr1_4:60917593-60917612 Msa0175100:intron 60.0%
! GCAAGCAGGGCATTCACGTC+TGG + chr1_4:60919712-60919731 None:intergenic 60.0%
TCAAGGGCGGCAATGCTGCA+TGG + chr1_4:60920532-60920551 None:intergenic 60.0%
GCCGCCCTTGAAAGTGAACC+TGG - chr1_4:60920541-60920560 Msa0175100:CDS 60.0%
TGCATGGCTCACCAGTCCCA+TGG - chr1_4:60920897-60920916 Msa0175100:CDS 60.0%
TGGCATGTCTGCCATGGGAC+TGG + chr1_4:60920911-60920930 None:intergenic 60.0%
!! TCACCACTCTGAGGTCGAGG+AGG + chr1_4:60920956-60920975 None:intergenic 60.0%
!! GCTTCACCACTCTGAGGTCG+AGG + chr1_4:60920959-60920978 None:intergenic 60.0%
GAGCCTCCTCGACCTCAGAG+TGG - chr1_4:60920950-60920969 Msa0175100:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 60916677 60921412 60916677 ID=Msa0175100;Name=Msa0175100
chr1_4 mRNA 60916677 60921412 60916677 ID=Msa0175100-mRNA-1;Parent=Msa0175100;Name=Msa0175100-mRNA-1;_AED=0.13;_eAED=0.13;_QI=65|1|1|1|1|1|8|582|510
chr1_4 exon 60916677 60917417 60916677 ID=Msa0175100-mRNA-1:exon:19425;Parent=Msa0175100-mRNA-1
chr1_4 exon 60917504 60917552 60917504 ID=Msa0175100-mRNA-1:exon:19424;Parent=Msa0175100-mRNA-1
chr1_4 exon 60917855 60917980 60917855 ID=Msa0175100-mRNA-1:exon:19423;Parent=Msa0175100-mRNA-1
chr1_4 exon 60918953 60919050 60918953 ID=Msa0175100-mRNA-1:exon:19422;Parent=Msa0175100-mRNA-1
chr1_4 exon 60919177 60919257 60919177 ID=Msa0175100-mRNA-1:exon:19421;Parent=Msa0175100-mRNA-1
chr1_4 exon 60919373 60919444 60919373 ID=Msa0175100-mRNA-1:exon:19420;Parent=Msa0175100-mRNA-1
chr1_4 exon 60919527 60919601 60919527 ID=Msa0175100-mRNA-1:exon:19419;Parent=Msa0175100-mRNA-1
chr1_4 exon 60920475 60921412 60920475 ID=Msa0175100-mRNA-1:exon:19418;Parent=Msa0175100-mRNA-1
chr1_4 five_prime_UTR 60921348 60921412 60921348 ID=Msa0175100-mRNA-1:five_prime_utr;Parent=Msa0175100-mRNA-1
chr1_4 CDS 60920475 60921347 60920475 ID=Msa0175100-mRNA-1:cds;Parent=Msa0175100-mRNA-1
chr1_4 CDS 60919527 60919601 60919527 ID=Msa0175100-mRNA-1:cds;Parent=Msa0175100-mRNA-1
chr1_4 CDS 60919373 60919444 60919373 ID=Msa0175100-mRNA-1:cds;Parent=Msa0175100-mRNA-1
chr1_4 CDS 60919177 60919257 60919177 ID=Msa0175100-mRNA-1:cds;Parent=Msa0175100-mRNA-1
chr1_4 CDS 60918953 60919050 60918953 ID=Msa0175100-mRNA-1:cds;Parent=Msa0175100-mRNA-1
chr1_4 CDS 60917855 60917980 60917855 ID=Msa0175100-mRNA-1:cds;Parent=Msa0175100-mRNA-1
chr1_4 CDS 60917504 60917552 60917504 ID=Msa0175100-mRNA-1:cds;Parent=Msa0175100-mRNA-1
chr1_4 CDS 60917259 60917417 60917259 ID=Msa0175100-mRNA-1:cds;Parent=Msa0175100-mRNA-1
chr1_4 three_prime_UTR 60916677 60917258 60916677 ID=Msa0175100-mRNA-1:three_prime_utr;Parent=Msa0175100-mRNA-1
Gene Sequence

>Msa0175100

ATGCCATTTATTCTTCAACTTCATCCTTGTAATTCTTCCTTATGCTTCAACTGCAACTCCTTCATTTTCAGCAAGAAATCATATAAGAAAGTTTGTTCTTTTCCCAATATTGTTCTTTCCACTCCTCATGGTTCAATTGTTTCTAAGAAAGTTTCTATTTTGAGCAATACCCACTTCAAGTTTTGCTCTAAAAATGGTGGGTTTGATGAGGTTTCAAGTGATTTAGCTGGAGAAGCCATTGATGATGAAATTCAAGTTGAGTTGTTGAACAAGCCGTCACCTGTTTTGGAAGTTGAGATGGAACAAGAGAAGCCTTCTGAAGAGGAAGCTTTGGCACCTTTTTTTAAGTTTTTCAAAGGTAGTAAAGATTATGTGAAGGAGGTTGACGAAGATAATGAGGTATTAGAACTGGAAGTTTCTGAACAAAAAGATGGTGTGAGTGATGAGGTTGAAAAAGAAGATGAAGAAAAAGAAGGAGAAGATAAGAAGGTTAATGTTGAGTACTATGAGCCAAAACCTGGTGATTTTGTTGTTGGTGTTGTTGTTTCAGGTAATGAAAACAAGCTTGATGTAAATGTTGGAGCAGATTTACTAGGTACAATGTTAACCAAGGAAGTGCTTCCTTTGAATGGTAAAGAAATGGATCATTTGTTATGTGATGTGAACAAGGATGCGGAGAATTTTACGGTTCAAGGGAAGATGGGAATTGTAAAGAATGATGAAGTAATGAGTGCAGCATCAGTGCCAGGAAGGCCTGTTGTAGAAACTGGAACCATTTTGTTTGCTGAGGTTTTAGGTAGAACACTTAGTGGTAGACCGTTGATTTCTACTAGAAGGCTCTTTCGTCGGATTGCTTGGCATCGAGTGAGGCAGATACAACAGCTCAATGAACCTATCGAGGTTAGAATTACAGAGTGGAATACTGGTGGCCTGCTAACAACGATTGAGGGTTTACGAGCTTTCCTACCCAAAGCTGAGCTTGTGACAAGAGTAAATAGCTTTACTGAATTGAAAGAAAATGTGGGGCGTCGTATGTATGTAGAAATTACTCGAATAGATGAAGCAAAAAATTCTTTGGTGCTTAGTGAAAAGGGAGCTTGGGAAAAGGCATATCTTCGTGAAGGGACACTTTTAGACGGAACCGTAAAAAAGATCTTTCCATATGGAGCACAAATTAAGATTGGGAAAACTAACAGAAGTGGGTTGCTGCATGTTTCAAATATCACTCGAGCTGAAGTTACTTCTGTCAGTGACGTACTCTCCGTTGATGAGAAGGTTAAGGCTCTTGTTGTGAGGTCAATGTTCCCCGATAAAATCTCTCTGAGCATTGCCGCCCTTGAAAGTGAACCTGGACTTTTTCTTTCAAATAAAGAGAGAGTATTTATGGAAGCTGATATGATGGCAAAGAAATATAAACAAAAGCTACCTCCTCCTATTGTCTCTACAAAATTAGGACCCTTACCAACTAGTGCTTTGCCGTTTGAAAATGAAGCACTTTATGCAAACTGGAAGTGGTTTAAGTTTGAAAAATGA

Protein sequence

>Msa0175100

MPFILQLHPCNSSLCFNCNSFIFSKKSYKKVCSFPNIVLSTPHGSIVSKKVSILSNTHFKFCSKNGGFDEVSSDLAGEAIDDEIQVELLNKPSPVLEVEMEQEKPSEEEALAPFFKFFKGSKDYVKEVDEDNEVLELEVSEQKDGVSDEVEKEDEEKEGEDKKVNVEYYEPKPGDFVVGVVVSGNENKLDVNVGADLLGTMLTKEVLPLNGKEMDHLLCDVNKDAENFTVQGKMGIVKNDEVMSAASVPGRPVVETGTILFAEVLGRTLSGRPLISTRRLFRRIAWHRVRQIQQLNEPIEVRITEWNTGGLLTTIEGLRAFLPKAELVTRVNSFTELKENVGRRMYVEITRIDEAKNSLVLSEKGAWEKAYLREGTLLDGTVKKIFPYGAQIKIGKTNRSGLLHVSNITRAEVTSVSDVLSVDEKVKALVVRSMFPDKISLSIAALESEPGLFLSNKERVFMEADMMAKKYKQKLPPPIVSTKLGPLPTSALPFENEALYANWKWFKFEK*