AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0021300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0021300 MtrunA17_Chr1g0201261 96.086 511 19 1 1 510 1 511 0.0 988
Msa0021300 MtrunA17_Chr2g0293821 30.244 205 135 4 274 475 158 357 1.41e-22 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0021300 AT1G71720.1 57.085 494 170 9 26 509 37 498 0.0 523
Msa0021300 AT1G71720.2 57.920 423 140 6 26 441 37 428 4.41e-158 456
Msa0021300 AT5G30510.1 32.195 205 130 4 274 475 165 363 1.89e-25 108

Find 118 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCATACAGAGAGTATTTA+TGG 0.166666 1_1:-37735726 Msa0021300:intron
GTTGTTGGTGTTGTTGTTTC+AGG 0.170222 1_1:-37739090 Msa0021300:CDS
TCTATAATGAACACCTAAAA+TGG 0.219855 1_1:+37735236 None:intergenic
CCTATTGTCTCTACAAAATT+AGG 0.227064 1_1:-37735659 Msa0021300:CDS
CATTGTTCTCCTATGTTGTT+TGG 0.236176 1_1:-37735395 Msa0021300:three_prime_UTR
AGGAGTGGAAAGAACAATAT+TGG 0.289687 1_1:+37739515 None:intergenic
GAACAAGCCGTCACCTGTTT+TGG 0.299137 1_1:-37739352 Msa0021300:CDS
GCATGGGGCTATAAAGTATT+TGG 0.301852 1_1:-37735361 Msa0021300:three_prime_UTR
ACTGAACAAAGCATTATCTT+TGG 0.305171 1_1:+37739655 None:intergenic
GCAACAAGAAAGAAATTTAA+AGG 0.309774 1_1:+37735295 None:intergenic
AATATCAAAATTTCAGTGAT+TGG 0.317959 1_1:+37735002 None:intergenic
GGATGAAGTTGAAGAATAAA+TGG 0.339304 1_1:+37739615 None:intergenic
GTTTCTACAACAGGCCTTCC+TGG 0.339830 1_1:+37738874 None:intergenic
GCCTTCTGAAGAGGAAGCTT+TGG 0.354245 1_1:-37739307 Msa0021300:CDS
GACCGTTGATTTCTACTAGA+AGG 0.354808 1_1:-37738804 Msa0021300:CDS
TCCTTTGAATGGTAAAGAAA+TGG 0.358874 1_1:-37738998 Msa0021300:CDS
TTTCAAACTTAAACCACTTC+CGG 0.360096 1_1:+37735585 None:intergenic
GGAAGGCCTGTTGTAGAAAC+TGG 0.360206 1_1:-37738871 Msa0021300:CDS
ATCTTAATTTGTGCTCCATA+TGG 0.366503 1_1:+37737264 None:intergenic
GGCTCTTTCGTCGGATTGCT+TGG 0.369347 1_1:-37738783 Msa0021300:CDS
ACAACAAAATCACCAGGTTT+TGG 0.371047 1_1:+37739108 None:intergenic
TTCTTTGGTGCTTAGTGAAA+AGG 0.372446 1_1:-37737478 Msa0021300:CDS
TCTTGTCACAAGCTCAGCTT+TGG 0.373548 1_1:+37737696 None:intergenic
TAAAACCTCAGCAAACAAAA+TGG 0.381979 1_1:+37738846 None:intergenic
AACTTGAATTTCATCATCAA+TGG 0.393250 1_1:+37739383 None:intergenic
TATAGATAGATTCATATAGT+TGG 0.399544 1_1:-37735219 Msa0021300:three_prime_UTR
TATGGAGCACAAATTAAGAT+TGG 0.400360 1_1:-37737261 Msa0021300:CDS
AAAGTCCAGGTTCACTTTCA+AGG 0.415620 1_1:+37735842 None:intergenic
ATTGTTCTCCTATGTTGTTT+GGG 0.417926 1_1:-37735394 Msa0021300:three_prime_UTR
TCCATCTCAACTTCCAAAAC+AGG 0.419736 1_1:+37739339 None:intergenic
CACTTTATGCAAACCGGAAG+TGG 0.420618 1_1:-37735598 Msa0021300:CDS
AAGGAAGTGCTTCCTTTGAA+TGG 0.425729 1_1:-37739009 Msa0021300:CDS
CGGCAAAGCACTAGTTGGTA+AGG 0.432883 1_1:+37735634 None:intergenic
ATGGTTCCAGTTTCTACAAC+AGG 0.436694 1_1:+37738865 None:intergenic
GGAGTGGAAAGAACAATATT+GGG 0.445067 1_1:+37739516 None:intergenic
AAAAGAAGGAGAAGATAAGA+AGG 0.446272 1_1:-37739151 Msa0021300:CDS
AGATAATGAGGTATTAGAAC+TGG 0.450849 1_1:-37739229 Msa0021300:CDS
AGAATTACAGAGTGGAATAC+TGG 0.452658 1_1:-37737842 Msa0021300:CDS
TCTTTGGTGCTTAGTGAAAA+GGG 0.453525 1_1:-37737477 Msa0021300:CDS
TGCTTGGCATCGAGTGAGGC+AGG 0.461627 1_1:-37738767 Msa0021300:intron
GCTTAGTGAAAAGGGAGCTT+GGG 0.468410 1_1:-37737469 Msa0021300:intron
CTCCGTTGATGAGAAGGTTA+AGG 0.469591 1_1:-37736191 Msa0021300:CDS
ATGAAGCACTTTATGCAAAC+CGG 0.475882 1_1:-37735604 Msa0021300:CDS
TGCTTAGTGAAAAGGGAGCT+TGG 0.478307 1_1:-37737470 Msa0021300:CDS
GAGGTTTCAAGTGATTTAGC+TGG 0.478592 1_1:-37739411 Msa0021300:CDS
CTTAAATGGCATGTCTGCCA+TGG 0.480958 1_1:+37735474 None:intergenic
ATTGTTCTTTCCACTCCTCA+TGG 0.483191 1_1:-37739510 Msa0021300:CDS
ATGGAGCACAAATTAAGATT+GGG 0.487763 1_1:-37737260 Msa0021300:CDS
ATTCAAAGGAAGCACTTCCT+TGG 0.487899 1_1:+37739011 None:intergenic
TGATTTCTTGCTGAAAATGA+AGG 0.488495 1_1:+37739560 None:intergenic
GGAGTTGCAGTTGAAGCATA+AGG 0.494734 1_1:+37739581 None:intergenic
TCAAACGGCAAAGCACTAGT+TGG 0.498148 1_1:+37735629 None:intergenic
ATGAGTGCAGCATCAGTGCC+AGG 0.498555 1_1:-37738892 Msa0021300:CDS
CTTGTCACAAGCTCAGCTTT+GGG 0.498895 1_1:+37737697 None:intergenic
TTACAACTTGGATACTTCAC+AGG 0.503212 1_1:+37735037 None:intergenic
TTTACGGTTCAACGGAAGAT+GGG 0.504336 1_1:-37738937 Msa0021300:CDS
CTGGTGAGCCATGCAACATA+AGG 0.507604 1_1:+37735499 None:intergenic
GCCGCCCTTGAAAGTGAACC+TGG 0.508285 1_1:-37735847 Msa0021300:CDS
CTACTAGAAGGCTCTTTCGT+CGG 0.515227 1_1:-37738792 Msa0021300:CDS
GAATAAATGGCATCTTTGTA+TGG 0.523040 1_1:+37739628 None:intergenic
TCCATTTCTTTACCATTCAA+AGG 0.525558 1_1:+37738997 None:intergenic
AAGTCCAGGTTCACTTTCAA+GGG 0.528592 1_1:+37735843 None:intergenic
CGTACTCTCCGTTGATGAGA+AGG 0.532205 1_1:-37736197 Msa0021300:CDS
AACAAGCTTGATGTAAATGT+TGG 0.533528 1_1:-37739060 Msa0021300:CDS
GTTTGGGCACATACAGAGCA+TGG 0.536874 1_1:-37735378 Msa0021300:three_prime_UTR
TCAGAGAACCTTATGTTGCA+TGG 0.538644 1_1:-37735507 Msa0021300:three_prime_UTR
GCTTCACCACTCTGAGGTCG+AGG 0.541768 1_1:+37735432 None:intergenic
ATTTATGGAAGCTGATATGA+TGG 0.544898 1_1:-37735711 Msa0021300:CDS
GCCAAAGCTTCCTCTTCAGA+AGG 0.545333 1_1:+37739306 None:intergenic
TTTGGGCACATACAGAGCAT+GGG 0.547339 1_1:-37735377 Msa0021300:three_prime_UTR
AATGTTGGAGCAGATTTACT+AGG 0.550877 1_1:-37739045 Msa0021300:CDS
TTTGTAGAGACAATAGGAGG+AGG 0.554599 1_1:+37735665 None:intergenic
TCTGTAATTCTAACCTCGAT+AGG 0.555447 1_1:+37737854 None:intergenic
TAGTAAAGATTATGTGAAGG+AGG 0.556511 1_1:-37739259 Msa0021300:CDS
TTTAGAGCAAAACTTGAAGT+GGG 0.556785 1_1:+37739449 None:intergenic
TGGCATGTCTGCCATGGGAC+TGG 0.560834 1_1:+37735480 None:intergenic
ATAATGAACACCTAAAATGG+AGG 0.565677 1_1:+37735239 None:intergenic
ACGTGATTACAATTACAACT+TGG 0.567461 1_1:+37735025 None:intergenic
GGAGGTTGACGAAGATAATG+AGG 0.568457 1_1:-37739241 Msa0021300:CDS
TAATGAACACCTAAAATGGA+GGG 0.568819 1_1:+37735240 None:intergenic
TTAAATGGCATGTCTGCCAT+GGG 0.575229 1_1:+37735475 None:intergenic
ACAAGAGAAGCCTTCTGAAG+AGG 0.577741 1_1:-37739316 Msa0021300:CDS
TCACAAGCTCAGCTTTGGGT+AGG 0.577775 1_1:+37737701 None:intergenic
ATAGTTGGATGTAAATTCTG+AGG 0.578855 1_1:-37735204 Msa0021300:three_prime_UTR
AACAATTGAACCATGAGGAG+TGG 0.579544 1_1:+37739500 None:intergenic
TGTATGTGCCCAAACAACAT+AGG 0.587861 1_1:+37735386 None:intergenic
GAAAAGGCATATCTTCGTGA+AGG 0.597129 1_1:-37737321 Msa0021300:CDS
TCAACTTCCAAAACAGGTGA+CGG 0.599928 1_1:+37739345 None:intergenic
GAGTACTATGAGCCAAAACC+TGG 0.601150 1_1:-37739120 Msa0021300:CDS
AGCCTTAACCTTCTCATCAA+CGG 0.602910 1_1:+37736189 None:intergenic
TGCATGGCTCACCAGTCCCA+TGG 0.604849 1_1:-37735491 Msa0021300:three_prime_UTR
TCCAGGTTCACTTTCAAGGG+CGG 0.605234 1_1:+37735846 None:intergenic
AGGTAGTAAAGATTATGTGA+AGG 0.610501 1_1:-37739262 Msa0021300:CDS
GTGCAGCATCAGTGCCAGGA+AGG 0.618214 1_1:-37738888 Msa0021300:CDS
AGGTTAAGGCTCTTGTTGTG+AGG 0.619077 1_1:-37736177 Msa0021300:CDS
GGATTGCTTGGCATCGAGTG+AGG 0.619176 1_1:-37738771 Msa0021300:CDS
AATGAACACCTAAAATGGAG+GGG 0.622669 1_1:+37735241 None:intergenic
TAGTTGGATGTAAATTCTGA+GGG 0.623285 1_1:-37735203 Msa0021300:three_prime_UTR
GGCAAAGCACTAGTTGGTAA+GGG 0.627922 1_1:+37735635 None:intergenic
AAGCATAAGGAAGAATTACA+AGG 0.632192 1_1:+37739594 None:intergenic
TGGTCTGCTAACAACGATTG+AGG 0.632735 1_1:-37737819 Msa0021300:intron
AAAAGGCATATCTTCGTGAA+GGG 0.634782 1_1:-37737320 Msa0021300:CDS
TTTGTTATGTGATGTGAACA+AGG 0.648082 1_1:-37738971 Msa0021300:CDS
AGCCTTCTAGTAGAAATCAA+CGG 0.649854 1_1:+37738802 None:intergenic
TTGGGCACATACAGAGCATG+GGG 0.650861 1_1:-37735376 Msa0021300:three_prime_UTR
AGATTGGGAAAACTAACAGA+AGG 0.651020 1_1:-37737245 Msa0021300:intron
TCACCACTCTGAGGTCGAGG+AGG 0.652213 1_1:+37735435 None:intergenic
ACTAGGTACAATGTTAACCA+AGG 0.652350 1_1:-37739028 Msa0021300:CDS
TTAGAAACAATTGAACCATG+AGG 0.654840 1_1:+37739495 None:intergenic
ATGTGATGTGAACAAGGATG+CGG 0.659417 1_1:-37738965 Msa0021300:CDS
ACACCAACAACAAAATCACC+AGG 0.669393 1_1:+37739102 None:intergenic
TACAACTTGGATACTTCACA+GGG 0.672103 1_1:+37735038 None:intergenic
ACAGCTCAATGAACCTATCG+AGG 0.680086 1_1:-37737867 Msa0021300:CDS
ATTACAGAGTGGAATACTGG+TGG 0.683030 1_1:-37737839 Msa0021300:CDS
AAAAGATGGTGTGAGTGATG+AGG 0.692251 1_1:-37739193 Msa0021300:CDS
GAGCCTCCTCGACCTCAGAG+TGG 0.703238 1_1:-37735438 Msa0021300:three_prime_UTR
TCCCCGATAAAATCTCTCTG+AGG 0.706627 1_1:-37736147 Msa0021300:intron
TCGAGGTTAGAATTACAGAG+TGG 0.742925 1_1:-37737850 Msa0021300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAATAAAAAAAAA+AGG + chr1_1:37739417-37739436 None:intergenic 0.0%
!! AATTTCAATATTATAAATCA+AGG - chr1_1:37736517-37736536 Msa0021300:intron 10.0%
!! ATACTGAAATTTAGTAAAAA+AGG - chr1_1:37736644-37736663 Msa0021300:intron 15.0%
!!! AAATTGAGTTATATTTTCAA+GGG + chr1_1:37737497-37737516 None:intergenic 15.0%
!!! AAGATTAATGTTTTAAAAAC+CGG - chr1_1:37737819-37737838 Msa0021300:intron 15.0%
!!! TAAGTTTTAGTTGTTAATTT+TGG - chr1_1:37738351-37738370 Msa0021300:intron 15.0%
!!! CCTTTGAAAAACTTAAAAAA+AGG + chr1_1:37735408-37735427 None:intergenic 20.0%
!!! CCTTTTTTTAAGTTTTTCAA+AGG - chr1_1:37735405-37735424 Msa0021300:three_prime_UTR 20.0%
!! TAATAAATGGAGAACAAATA+TGG + chr1_1:37736120-37736139 None:intergenic 20.0%
!!! TTTGTCATTTCATATCAAAT+TGG - chr1_1:37736594-37736613 Msa0021300:intron 20.0%
!!! AATCTGATCTTTTTAATGTT+TGG - chr1_1:37736787-37736806 Msa0021300:intron 20.0%
!!! ATCTGATCTTTTTAATGTTT+GGG - chr1_1:37736788-37736807 Msa0021300:intron 20.0%
!!! AACATAAATTTCAAGTCAAT+GGG + chr1_1:37736899-37736918 None:intergenic 20.0%
!! ATTAGCAAGAGATTATTATA+AGG + chr1_1:37737119-37737138 None:intergenic 20.0%
!!! ATATGGAAAGATCTTTTTTA+CGG + chr1_1:37737409-37737428 None:intergenic 20.0%
!!! CAAATTGAGTTATATTTTCA+AGG + chr1_1:37737498-37737517 None:intergenic 20.0%
!!! TGCATCTAAAACTTTTTTAA+TGG - chr1_1:37737716-37737735 Msa0021300:CDS 20.0%
!!! GCATCTAAAACTTTTTTAAT+GGG - chr1_1:37737717-37737736 Msa0021300:CDS 20.0%
!!! GAAATTTGGCATAATTTTAT+AGG - chr1_1:37738108-37738127 Msa0021300:intron 20.0%
!!! ACTTTTTCTTTCAAATAAAG+AGG - chr1_1:37738863-37738882 Msa0021300:CDS 20.0%
!! TCCTATTAAAATTTCTTCTA+TGG - chr1_1:37738906-37738925 Msa0021300:CDS 20.0%
!!! ACCATAGAAGAAATTTTAAT+AGG + chr1_1:37738910-37738929 None:intergenic 20.0%
!!! CTTCATATTTTCTTCTTAAA+TGG + chr1_1:37739230-37739249 None:intergenic 20.0%
!! TATAGATAGATTCATATAGT+TGG - chr1_1:37739468-37739487 Msa0021300:CDS 20.0%
!! AATATCAAAATTTCAGTGAT+TGG + chr1_1:37739688-37739707 None:intergenic 20.0%
!!! TTCAAGTTTTGCTCTAAAAA+TGG - chr1_1:37735243-37735262 Msa0021300:three_prime_UTR 25.0%
! AACTTGAATTTCATCATCAA+TGG + chr1_1:37735307-37735326 None:intergenic 25.0%
! AAAGAAGATGAAGAAAAAGA+AGG - chr1_1:37735522-37735541 Msa0021300:three_prime_UTR 25.0%
! TACTAAACTAAACATTGGAT+AGG + chr1_1:37735975-37735994 None:intergenic 25.0%
! ACATCTACTAAACTAAACAT+TGG + chr1_1:37735980-37735999 None:intergenic 25.0%
!! TCCATCTTTAATTTATGAGT+CGG - chr1_1:37736015-37736034 Msa0021300:intron 25.0%
!! TATTTAGCAAACAGTAGTTT+TGG - chr1_1:37736074-37736093 Msa0021300:intron 25.0%
! AATTTGGCATTGCTAATAAA+TGG + chr1_1:37736133-37736152 None:intergenic 25.0%
! ATTTATTAGCAATGCCAAAT+TGG - chr1_1:37736132-37736151 Msa0021300:intron 25.0%
! GATAAACATTTATCCAAACA+GGG + chr1_1:37736191-37736210 None:intergenic 25.0%
! TGATAAACATTTATCCAAAC+AGG + chr1_1:37736192-37736211 None:intergenic 25.0%
! TCATTTCATATCAAATTGGT+AGG - chr1_1:37736598-37736617 Msa0021300:intron 25.0%
! CATTTCATATCAAATTGGTA+GGG - chr1_1:37736599-37736618 Msa0021300:intron 25.0%
!! TCTGATCTTTTTAATGTTTG+GGG - chr1_1:37736789-37736808 Msa0021300:intron 25.0%
!! GAACATAAATTTCAAGTCAA+TGG + chr1_1:37736900-37736919 None:intergenic 25.0%
! ATTTACTCAAATAATGACAC+AGG + chr1_1:37736922-37736941 None:intergenic 25.0%
!! TGCTTATTTCTTCATGAATT+CGG - chr1_1:37736941-37736960 Msa0021300:intron 25.0%
! AGATGAAGCAAAAAATTCTT+TGG - chr1_1:37737194-37737213 Msa0021300:intron 25.0%
! GTAAAAAAGATCTTTCCATA+TGG - chr1_1:37737408-37737427 Msa0021300:intron 25.0%
! GAAAATATAGATAATGCACT+AGG - chr1_1:37737539-37737558 Msa0021300:intron 25.0%
!! TCAAAGTTTAACAATCGTTT+TGG + chr1_1:37737581-37737600 None:intergenic 25.0%
! CGATTGTTAAACTTTGAATT+TGG - chr1_1:37737584-37737603 Msa0021300:intron 25.0%
! TTGTTAAACTTTGAATTTGG+TGG - chr1_1:37737587-37737606 Msa0021300:intron 25.0%
! TTAACTCTATAGTAATGAAC+TGG - chr1_1:37737627-37737646 Msa0021300:intron 25.0%
! ACTATATAGATAACAATGAC+AGG + chr1_1:37737653-37737672 None:intergenic 25.0%
! TGTCATTGTTATCTATATAG+TGG - chr1_1:37737652-37737671 Msa0021300:intron 25.0%
! TTGTATATAAAAAGCAAGCA+GGG + chr1_1:37738052-37738071 None:intergenic 25.0%
!! TATGCCAAATTTCTCATTTT+GGG + chr1_1:37738101-37738120 None:intergenic 25.0%
!! TTATGCCAAATTTCTCATTT+TGG + chr1_1:37738102-37738121 None:intergenic 25.0%
!! TTGGCATAATTTTATAGGTA+TGG - chr1_1:37738113-37738132 Msa0021300:intron 25.0%
! AGAAAATTATGCAGAAACAA+GGG + chr1_1:37738181-37738200 None:intergenic 25.0%
! AAGAAAATTATGCAGAAACA+AGG + chr1_1:37738182-37738201 None:intergenic 25.0%
!!! TACTATCTTTGTTTCTATCA+TGG - chr1_1:37738202-37738221 Msa0021300:intron 25.0%
!! TAACTTCCTTTTGTAATTGT+TGG - chr1_1:37738580-37738599 Msa0021300:intron 25.0%
!! AACTTCCTTTTGTAATTGTT+GGG - chr1_1:37738581-37738600 Msa0021300:intron 25.0%
! TTAACATAAACAAATGAGTC+AGG - chr1_1:37738613-37738632 Msa0021300:intron 25.0%
!! AATCAAATTTTGAATCTTGG+AGG + chr1_1:37738688-37738707 None:intergenic 25.0%
!! ACGAATCAAATTTTGAATCT+TGG + chr1_1:37738691-37738710 None:intergenic 25.0%
! TTATTTGAAAGAAAAAGTCC+AGG + chr1_1:37738861-37738880 None:intergenic 25.0%
!!! TAAAGTGCTTCATTTTCAAA+CGG + chr1_1:37739076-37739095 None:intergenic 25.0%
! GCAACAAGAAAGAAATTTAA+AGG + chr1_1:37739395-37739414 None:intergenic 25.0%
! TCTATAATGAACACCTAAAA+TGG + chr1_1:37739454-37739473 None:intergenic 25.0%
! ACTGAACAAAGCATTATCTT+TGG + chr1_1:37735035-37735054 None:intergenic 30.0%
GAATAAATGGCATCTTTGTA+TGG + chr1_1:37735062-37735081 None:intergenic 30.0%
GGATGAAGTTGAAGAATAAA+TGG + chr1_1:37735075-37735094 None:intergenic 30.0%
AAGCATAAGGAAGAATTACA+AGG + chr1_1:37735096-37735115 None:intergenic 30.0%
TGATTTCTTGCTGAAAATGA+AGG + chr1_1:37735130-37735149 None:intergenic 30.0%
TTAGAAACAATTGAACCATG+AGG + chr1_1:37735195-37735214 None:intergenic 30.0%
! TTTAGAGCAAAACTTGAAGT+GGG + chr1_1:37735241-37735260 None:intergenic 30.0%
!!! TTTTAGAGCAAAACTTGAAG+TGG + chr1_1:37735242-37735261 None:intergenic 30.0%
!!! AAGTTTTGCTCTAAAAATGG+TGG - chr1_1:37735246-37735265 Msa0021300:three_prime_UTR 30.0%
!!! AGTTTTGCTCTAAAAATGGT+GGG - chr1_1:37735247-37735266 Msa0021300:three_prime_UTR 30.0%
AGGTAGTAAAGATTATGTGA+AGG - chr1_1:37735425-37735444 Msa0021300:three_prime_UTR 30.0%
TAGTAAAGATTATGTGAAGG+AGG - chr1_1:37735428-37735447 Msa0021300:three_prime_UTR 30.0%
! AGATAATGAGGTATTAGAAC+TGG - chr1_1:37735458-37735477 Msa0021300:three_prime_UTR 30.0%
GAAGTTTCTGAACAAAAAGA+TGG - chr1_1:37735480-37735499 Msa0021300:three_prime_UTR 30.0%
AAAAGAAGGAGAAGATAAGA+AGG - chr1_1:37735536-37735555 Msa0021300:three_prime_UTR 30.0%
AACAAGCTTGATGTAAATGT+TGG - chr1_1:37735627-37735646 Msa0021300:CDS 30.0%
TCCTTTGAATGGTAAAGAAA+TGG - chr1_1:37735689-37735708 Msa0021300:CDS 30.0%
TCCATTTCTTTACCATTCAA+AGG + chr1_1:37735693-37735712 None:intergenic 30.0%
! TTTGTTATGTGATGTGAACA+AGG - chr1_1:37735716-37735735 Msa0021300:CDS 30.0%
TAAAACCTCAGCAAACAAAA+TGG + chr1_1:37735844-37735863 None:intergenic 30.0%
!! ATTTTGTTTGCTGAGGTTTT+AGG - chr1_1:37735843-37735862 Msa0021300:CDS 30.0%
AACATTGGATAGGAGTAAAA+AGG + chr1_1:37735965-37735984 None:intergenic 30.0%
AAAGATGGAAGATGAAATCT+TGG + chr1_1:37736004-37736023 None:intergenic 30.0%
TCCGACTCATAAATTAAAGA+TGG + chr1_1:37736019-37736038 None:intergenic 30.0%
ATGGTCTCATGTGTATATTT+AGG + chr1_1:37736101-37736120 None:intergenic 30.0%
!! AATGACTTGGTGTATATGTA+TGG - chr1_1:37736545-37736564 Msa0021300:intron 30.0%
!! ACGGAGTATTGATAAGATAA+TGG + chr1_1:37736702-37736721 None:intergenic 30.0%
AGGATTACTAACAGTGATAA+CGG + chr1_1:37736721-37736740 None:intergenic 30.0%
TCATTAGACTTTACAGAGAT+AGG + chr1_1:37736741-37736760 None:intergenic 30.0%
! GAAAATGTAAGTTGCAGTTT+TGG - chr1_1:37737038-37737057 Msa0021300:intron 30.0%
GAATGGAAAAAAATTGTCCT+TGG + chr1_1:37737077-37737096 None:intergenic 30.0%
! ATACTTGATCATGATGATGT+AGG - chr1_1:37737137-37737156 Msa0021300:intron 30.0%
GCAAGAAAGTAACGAAAAAT+AGG + chr1_1:37737269-37737288 None:intergenic 30.0%
!! ATCTTAATTTGTGCTCCATA+TGG + chr1_1:37737426-37737445 None:intergenic 30.0%
TATGGAGCACAAATTAAGAT+TGG - chr1_1:37737426-37737445 Msa0021300:intron 30.0%
ATGGAGCACAAATTAAGATT+GGG - chr1_1:37737427-37737446 Msa0021300:intron 30.0%
!! TCAATTTGAGTTCTTTTCGA+TGG - chr1_1:37737510-37737529 Msa0021300:CDS 30.0%
CAATTACAGCAGCAAATAAA+TGG + chr1_1:37737698-37737717 None:intergenic 30.0%
AACCAATTACATATCCCTAA+GGG + chr1_1:37737772-37737791 None:intergenic 30.0%
AAACCAATTACATATCCCTA+AGG + chr1_1:37737773-37737792 None:intergenic 30.0%
TTAGGGATATGTAATTGGTT+TGG - chr1_1:37737772-37737791 Msa0021300:intron 30.0%
!! TATGTAATTGGTTTGGTATC+AGG - chr1_1:37737779-37737798 Msa0021300:intron 30.0%
! ATAGATTTCAATAGCCCTTT+TGG - chr1_1:37737887-37737906 Msa0021300:intron 30.0%
GTTGTATATAAAAAGCAAGC+AGG + chr1_1:37738053-37738072 None:intergenic 30.0%
TCTTCCCAAAATGAGAAATT+TGG - chr1_1:37738094-37738113 Msa0021300:intron 30.0%
ATAACAACGAAAAGGTAGTA+GGG + chr1_1:37738254-37738273 None:intergenic 30.0%
AATGCCAGCTTGATAAAATA+TGG + chr1_1:37738388-37738407 None:intergenic 30.0%
! TTACCTCAGAGAGATTTTAT+CGG + chr1_1:37738546-37738565 None:intergenic 30.0%
ACAAACCCAACAATTACAAA+AGG + chr1_1:37738589-37738608 None:intergenic 30.0%
! TTGTAATTGTTGGGTTTGTT+TGG - chr1_1:37738590-37738609 Msa0021300:intron 30.0%
ATCAACAACATGAATGTAGT+TGG + chr1_1:37738790-37738809 None:intergenic 30.0%
!! GATCATACAGAGAGTATTTA+TGG - chr1_1:37738961-37738980 Msa0021300:CDS 30.0%
ATTTATGGAAGCTGATATGA+TGG - chr1_1:37738976-37738995 Msa0021300:CDS 30.0%
! AATTTTGTAGAGACAATAGG+AGG + chr1_1:37739028-37739047 None:intergenic 30.0%
! CCTAATTTTGTAGAGACAAT+AGG + chr1_1:37739031-37739050 None:intergenic 30.0%
CCTATTGTCTCTACAAAATT+AGG - chr1_1:37739028-37739047 Msa0021300:CDS 30.0%
TTTCAAACTTAAACCACTTC+CGG + chr1_1:37739105-37739124 None:intergenic 30.0%
!!! TGAACAGTTTTTTTTCATGC+TGG + chr1_1:37739144-37739163 None:intergenic 30.0%
! ATTGTTCTCCTATGTTGTTT+GGG - chr1_1:37739293-37739312 Msa0021300:CDS 30.0%
TAATGAACACCTAAAATGGA+GGG + chr1_1:37739450-37739469 None:intergenic 30.0%
ATAATGAACACCTAAAATGG+AGG + chr1_1:37739451-37739470 None:intergenic 30.0%
ATAGTTGGATGTAAATTCTG+AGG - chr1_1:37739483-37739502 Msa0021300:CDS 30.0%
TAGTTGGATGTAAATTCTGA+GGG - chr1_1:37739484-37739503 Msa0021300:CDS 30.0%
ACGTGATTACAATTACAACT+TGG + chr1_1:37739665-37739684 None:intergenic 30.0%
GGAGTGGAAAGAACAATATT+GGG + chr1_1:37735174-37735193 None:intergenic 35.0%
AGGAGTGGAAAGAACAATAT+TGG + chr1_1:37735175-37735194 None:intergenic 35.0%
!! TAAAAATGGTGGGTTTGATG+AGG - chr1_1:37735257-37735276 Msa0021300:three_prime_UTR 35.0%
! ACAACAAAATCACCAGGTTT+TGG + chr1_1:37735582-37735601 None:intergenic 35.0%
!! AAACCTGGTGATTTTGTTGT+TGG - chr1_1:37735582-37735601 Msa0021300:CDS 35.0%
AATGTTGGAGCAGATTTACT+AGG - chr1_1:37735642-37735661 Msa0021300:CDS 35.0%
ACTAGGTACAATGTTAACCA+AGG - chr1_1:37735659-37735678 Msa0021300:CDS 35.0%
!! GTTTTAGGTAGAACACTTAG+TGG - chr1_1:37735858-37735877 Msa0021300:intron 35.0%
AGCCTTCTAGTAGAAATCAA+CGG + chr1_1:37735888-37735907 None:intergenic 35.0%
! AAGTTTTCCTGAAGAGCTTA+TGG - chr1_1:37736298-37736317 Msa0021300:intron 35.0%
! TAAGCACTTGTTAGACTGTT+TGG + chr1_1:37736354-37736373 None:intergenic 35.0%
AGTTAATCCAAAGTCCAAAC+AGG - chr1_1:37736395-37736414 Msa0021300:intron 35.0%
GATTGCATTGTCTTAGTTTC+TGG - chr1_1:37736440-37736459 Msa0021300:intron 35.0%
ATGGCTAAAATGTGACTTGA+AGG - chr1_1:37736471-37736490 Msa0021300:intron 35.0%
AATCAAGGACTTGAATGACT+TGG - chr1_1:37736532-37736551 Msa0021300:intron 35.0%
!!! ACAACAGCAGATGTCATTTT+TGG + chr1_1:37736575-37736594 None:intergenic 35.0%
TCTGTAATTCTAACCTCGAT+AGG + chr1_1:37736836-37736855 None:intergenic 35.0%
AGAATTACAGAGTGGAATAC+TGG - chr1_1:37736845-37736864 Msa0021300:intron 35.0%
TTCATGAATTCGGATGTGTA+GGG - chr1_1:37736951-37736970 Msa0021300:intron 35.0%
AGTAACTACACTGTTCAGAA+TGG + chr1_1:37737094-37737113 None:intergenic 35.0%
! TTGATCATGATGATGTAGGT+GGG - chr1_1:37737141-37737160 Msa0021300:intron 35.0%
!! TTCTTTGGTGCTTAGTGAAA+AGG - chr1_1:37737209-37737228 Msa0021300:intron 35.0%
!! TCTTTGGTGCTTAGTGAAAA+GGG - chr1_1:37737210-37737229 Msa0021300:intron 35.0%
! AAAAGGCATATCTTCGTGAA+GGG - chr1_1:37737367-37737386 Msa0021300:intron 35.0%
AGATTGGGAAAACTAACAGA+AGG - chr1_1:37737442-37737461 Msa0021300:intron 35.0%
GATAATGCACTAGGAAAATC+AGG - chr1_1:37737548-37737567 Msa0021300:intron 35.0%
ACAGCAGCAAATAAATGGAA+AGG + chr1_1:37737693-37737712 None:intergenic 35.0%
AAGGGCTATTGAAATCTATC+AGG + chr1_1:37737886-37737905 None:intergenic 35.0%
!! TTTCAATAGCCCTTTTGGTT+TGG - chr1_1:37737892-37737911 Msa0021300:intron 35.0%
ACAAACCAAACCGTACTATT+CGG + chr1_1:37738002-37738021 None:intergenic 35.0%
!! TACGGTTTGGTTTGTTCAAT+GGG - chr1_1:37738007-37738026 Msa0021300:intron 35.0%
CATAACAACGAAAAGGTAGT+AGG + chr1_1:37738255-37738274 None:intergenic 35.0%
! CTACTACCTTTTCGTTGTTA+TGG - chr1_1:37738253-37738272 Msa0021300:intron 35.0%
CAGCTTGATAAAATATGGAC+AGG + chr1_1:37738383-37738402 None:intergenic 35.0%
! CTGTCCATATTTTATCAAGC+TGG - chr1_1:37738381-37738400 Msa0021300:intron 35.0%
AGGAATCCAACATGTTCATT+TGG + chr1_1:37738411-37738430 None:intergenic 35.0%
! TACCTCAGAGAGATTTTATC+GGG + chr1_1:37738545-37738564 None:intergenic 35.0%
! ATGAAGCACTTTATGCAAAC+CGG - chr1_1:37739083-37739102 Msa0021300:CDS 35.0%
CATTGTTCTCCTATGTTGTT+TGG - chr1_1:37739292-37739311 Msa0021300:CDS 35.0%
AATGAACACCTAAAATGGAG+GGG + chr1_1:37739449-37739468 None:intergenic 35.0%
TACAACTTGGATACTTCACA+GGG + chr1_1:37739652-37739671 None:intergenic 35.0%
TTACAACTTGGATACTTCAC+AGG + chr1_1:37739653-37739672 None:intergenic 35.0%
ATTGTTCTTTCCACTCCTCA+TGG - chr1_1:37735177-37735196 Msa0021300:three_prime_UTR 40.0%
AACAATTGAACCATGAGGAG+TGG + chr1_1:37735190-37735209 None:intergenic 40.0%
! GAGGTTTCAAGTGATTTAGC+TGG - chr1_1:37735276-37735295 Msa0021300:three_prime_UTR 40.0%
TCAACTTCCAAAACAGGTGA+CGG + chr1_1:37735345-37735364 None:intergenic 40.0%
!!! ACCTGTTTTGGAAGTTGAGA+TGG - chr1_1:37735347-37735366 Msa0021300:three_prime_UTR 40.0%
TCCATCTCAACTTCCAAAAC+AGG + chr1_1:37735351-37735370 None:intergenic 40.0%
AAAAGATGGTGTGAGTGATG+AGG - chr1_1:37735494-37735513 Msa0021300:three_prime_UTR 40.0%
ACACCAACAACAAAATCACC+AGG + chr1_1:37735588-37735607 None:intergenic 40.0%
!! GTTGTTGGTGTTGTTGTTTC+AGG - chr1_1:37735597-37735616 Msa0021300:CDS 40.0%
!! ATTCAAAGGAAGCACTTCCT+TGG + chr1_1:37735679-37735698 None:intergenic 40.0%
!! AAGGAAGTGCTTCCTTTGAA+TGG - chr1_1:37735678-37735697 Msa0021300:CDS 40.0%
ATGTGATGTGAACAAGGATG+CGG - chr1_1:37735722-37735741 Msa0021300:intron 40.0%
! CAAGGATGCGGAGAATTTTA+CGG - chr1_1:37735734-37735753 Msa0021300:intron 40.0%
! CGGAGAATTTTACGGTTCAA+CGG - chr1_1:37735742-37735761 Msa0021300:intron 40.0%
! TTTTACGGTTCAACGGAAGA+TGG - chr1_1:37735749-37735768 Msa0021300:intron 40.0%
TTTACGGTTCAACGGAAGAT+GGG - chr1_1:37735750-37735769 Msa0021300:intron 40.0%
ATGGTTCCAGTTTCTACAAC+AGG + chr1_1:37735825-37735844 None:intergenic 40.0%
!! TGGAACCATTTTGTTTGCTG+AGG - chr1_1:37735836-37735855 Msa0021300:CDS 40.0%
!! GACCGTTGATTTCTACTAGA+AGG - chr1_1:37735883-37735902 Msa0021300:intron 40.0%
! ATGCCAAATTGGCTCTTCAA+TGG - chr1_1:37736143-37736162 Msa0021300:intron 40.0%
TCACCATTGAAGAGCCAATT+TGG + chr1_1:37736149-37736168 None:intergenic 40.0%
! TATCCAACTTTTGCCCTGTT+TGG - chr1_1:37736175-37736194 Msa0021300:CDS 40.0%
TATCCAAACAGGGCAAAAGT+TGG + chr1_1:37736181-37736200 None:intergenic 40.0%
GACATATCCATAAGCTCTTC+AGG + chr1_1:37736308-37736327 None:intergenic 40.0%
TCTGACCCTTGAAAGACAAA+GGG + chr1_1:37736422-37736441 None:intergenic 40.0%
ATCTGACCCTTGAAAGACAA+AGG + chr1_1:37736423-37736442 None:intergenic 40.0%
!! TCACATTTTAGCCATCAAGC+TGG + chr1_1:37736466-37736485 None:intergenic 40.0%
!! GACTTGGTGTATATGTATGG+AGG - chr1_1:37736548-37736567 Msa0021300:intron 40.0%
TCGAGGTTAGAATTACAGAG+TGG - chr1_1:37736837-37736856 Msa0021300:intron 40.0%
ATTACAGAGTGGAATACTGG+TGG - chr1_1:37736848-37736867 Msa0021300:intron 40.0%
CTTCATGAATTCGGATGTGT+AGG - chr1_1:37736950-37736969 Msa0021300:intron 40.0%
! CTTGATCATGATGATGTAGG+TGG - chr1_1:37737140-37737159 Msa0021300:intron 40.0%
! TGATCATGATGATGTAGGTG+GGG - chr1_1:37737142-37737161 Msa0021300:intron 40.0%
! CATCGATGTTTCGAGTATCT+AGG - chr1_1:37737288-37737307 Msa0021300:CDS 40.0%
GTAAAACGACGTACAGGAAA+AGG - chr1_1:37737350-37737369 Msa0021300:intron 40.0%
! GAAAAGGCATATCTTCGTGA+AGG - chr1_1:37737366-37737385 Msa0021300:intron 40.0%
! GAGTTCTTTTCGATGGATGA+TGG - chr1_1:37737517-37737536 Msa0021300:CDS 40.0%
AATGCACTAGGAAAATCAGG+CGG - chr1_1:37737551-37737570 Msa0021300:intron 40.0%
AGCCCTTAGGGATATGTAAT+TGG - chr1_1:37737767-37737786 Msa0021300:intron 40.0%
AAATCTATCAGGCACCTAAC+TGG + chr1_1:37737875-37737894 None:intergenic 40.0%
! AACTCATTTGAAGCGAAGCA+GGG + chr1_1:37737936-37737955 None:intergenic 40.0%
AAACCAAACCGTACTATTCG+GGG + chr1_1:37738000-37738019 None:intergenic 40.0%
CAAACCAAACCGTACTATTC+GGG + chr1_1:37738001-37738020 None:intergenic 40.0%
!! GTACGGTTTGGTTTGTTCAA+TGG - chr1_1:37738006-37738025 Msa0021300:intron 40.0%
!! GTTTGGTTTGTTCAATGGGA+TGG - chr1_1:37738011-37738030 Msa0021300:intron 40.0%
ATGCAGCCATAACAACGAAA+AGG + chr1_1:37738262-37738281 None:intergenic 40.0%
ATGGCTGCATTGCTGTAAAT+AGG - chr1_1:37738272-37738291 Msa0021300:intron 40.0%
GGCATTCCAAATGAACATGT+TGG - chr1_1:37738402-37738421 Msa0021300:intron 40.0%
ACATGTTGGATTCCTTTCAG+TGG - chr1_1:37738416-37738435 Msa0021300:intron 40.0%
CATGTTGGATTCCTTTCAGT+GGG - chr1_1:37738417-37738436 Msa0021300:intron 40.0%
AGCCTTAACCTTCTCATCAA+CGG + chr1_1:37738501-37738520 None:intergenic 40.0%
! ACCTCAGAGAGATTTTATCG+GGG + chr1_1:37738544-37738563 None:intergenic 40.0%
! TCTTGGAGGATTTTCACGTT+AGG + chr1_1:37738674-37738693 None:intergenic 40.0%
TCTAAGAACGGTTCTTCTAC+AGG - chr1_1:37738723-37738742 Msa0021300:intron 40.0%
AAGTCCAGGTTCACTTTCAA+GGG + chr1_1:37738847-37738866 None:intergenic 40.0%
AAAGTCCAGGTTCACTTTCA+AGG + chr1_1:37738848-37738867 None:intergenic 40.0%
TTTGTAGAGACAATAGGAGG+AGG + chr1_1:37739025-37739044 None:intergenic 40.0%
TCAGAGAACCTTATGTTGCA+TGG - chr1_1:37739180-37739199 Msa0021300:CDS 40.0%
TTAAATGGCATGTCTGCCAT+GGG + chr1_1:37739215-37739234 None:intergenic 40.0%
AAAAAAGCTTCACCACTCTG+AGG + chr1_1:37739264-37739283 None:intergenic 40.0%
TGTATGTGCCCAAACAACAT+AGG + chr1_1:37739304-37739323 None:intergenic 40.0%
! GCATGGGGCTATAAAGTATT+TGG - chr1_1:37739326-37739345 Msa0021300:CDS 40.0%
! AGTTTCTTCCCCTCCATTTT+AGG - chr1_1:37739438-37739457 Msa0021300:CDS 40.0%
GGAGTTGCAGTTGAAGCATA+AGG + chr1_1:37735109-37735128 None:intergenic 45.0%
! ACAAGAGAAGCCTTCTGAAG+AGG - chr1_1:37735371-37735390 Msa0021300:three_prime_UTR 45.0%
GGAGGTTGACGAAGATAATG+AGG - chr1_1:37735446-37735465 Msa0021300:three_prime_UTR 45.0%
GAGTACTATGAGCCAAAACC+TGG - chr1_1:37735567-37735586 Msa0021300:exon 45.0%
CTACTAGAAGGCTCTTTCGT+CGG - chr1_1:37735895-37735914 Msa0021300:intron 45.0%
CTGACCCTTGAAAGACAAAG+GGG + chr1_1:37736421-37736440 None:intergenic 45.0%
!! TTAGTTTCTGGCCAGCTTGA+TGG - chr1_1:37736452-37736471 Msa0021300:intron 45.0%
ACAGCTCAATGAACCTATCG+AGG - chr1_1:37736820-37736839 Msa0021300:intron 45.0%
TGGTCTGCTAACAACGATTG+AGG - chr1_1:37736868-37736887 Msa0021300:intron 45.0%
CTTGTCACAAGCTCAGCTTT+GGG + chr1_1:37736993-37737012 None:intergenic 45.0%
TCTTGTCACAAGCTCAGCTT+TGG + chr1_1:37736994-37737013 None:intergenic 45.0%
TTGGAACGTTCTTCTTGCCA+AGG - chr1_1:37737057-37737076 Msa0021300:intron 45.0%
TGCTTAGTGAAAAGGGAGCT+TGG - chr1_1:37737217-37737236 Msa0021300:intron 45.0%
GCTTAGTGAAAAGGGAGCTT+GGG - chr1_1:37737218-37737237 Msa0021300:intron 45.0%
TGCTGTGTAAAACGACGTAC+AGG - chr1_1:37737344-37737363 Msa0021300:intron 45.0%
! CGTGAAGGGACACTTTTAGA+CGG - chr1_1:37737381-37737400 Msa0021300:intron 45.0%
ACAGAAGGTGAGTGATTGCT+CGG - chr1_1:37737457-37737476 Msa0021300:intron 45.0%
! CTGACAGGTTTGCTCTATTC+CGG + chr1_1:37737841-37737860 None:intergenic 45.0%
TTGAGGACGCCAAACCAAAA+GGG + chr1_1:37737904-37737923 None:intergenic 45.0%
AAGCAGGGATTTAGGTCTTG+AGG + chr1_1:37737921-37737940 None:intergenic 45.0%
TTGAAGCGAAGCAGGGATTT+AGG + chr1_1:37737929-37737948 None:intergenic 45.0%
! CAACTCATTTGAAGCGAAGC+AGG + chr1_1:37737937-37737956 None:intergenic 45.0%
TCCTACTATCTCCTAGAGAC+AGG - chr1_1:37737963-37737982 Msa0021300:intron 45.0%
CCTACTATCTCCTAGAGACA+GGG - chr1_1:37737964-37737983 Msa0021300:intron 45.0%
! CTCCGTTGATGAGAAGGTTA+AGG - chr1_1:37738496-37738515 Msa0021300:intron 45.0%
! AGGTTAAGGCTCTTGTTGTG+AGG - chr1_1:37738510-37738529 Msa0021300:intron 45.0%
TCCCCGATAAAATCTCTCTG+AGG - chr1_1:37738540-37738559 Msa0021300:intron 45.0%
!! ACGTAGTCGAGCTCTAAGAA+CGG - chr1_1:37738711-37738730 Msa0021300:intron 45.0%
!! GGCAAAGCACTAGTTGGTAA+GGG + chr1_1:37739055-37739074 None:intergenic 45.0%
! TCAAACGGCAAAGCACTAGT+TGG + chr1_1:37739061-37739080 None:intergenic 45.0%
CACTTTATGCAAACCGGAAG+TGG - chr1_1:37739089-37739108 Msa0021300:CDS 45.0%
CTTAAATGGCATGTCTGCCA+TGG + chr1_1:37739216-37739235 None:intergenic 45.0%
TTTGGGCACATACAGAGCAT+GGG - chr1_1:37739310-37739329 Msa0021300:CDS 45.0%
! GAACAAGCCGTCACCTGTTT+TGG - chr1_1:37735335-37735354 Msa0021300:three_prime_UTR 50.0%
! GCCTTCTGAAGAGGAAGCTT+TGG - chr1_1:37735380-37735399 Msa0021300:three_prime_UTR 50.0%
GCCAAAGCTTCCTCTTCAGA+AGG + chr1_1:37735384-37735403 None:intergenic 50.0%
GTTTCTACAACAGGCCTTCC+TGG + chr1_1:37735816-37735835 None:intergenic 50.0%
GGAAGGCCTGTTGTAGAAAC+TGG - chr1_1:37735816-37735835 Msa0021300:intron 50.0%
AAAGGGGCCTGTTTGGACTT+TGG + chr1_1:37736405-37736424 None:intergenic 50.0%
GAAAGACAAAGGGGCCTGTT+TGG + chr1_1:37736412-37736431 None:intergenic 50.0%
ACAGGCCCCTTTGTCTTTCA+AGG - chr1_1:37736413-37736432 Msa0021300:intron 50.0%
CAGGCCCCTTTGTCTTTCAA+GGG - chr1_1:37736414-37736433 Msa0021300:intron 50.0%
!! TCACAAGCTCAGCTTTGGGT+AGG + chr1_1:37736989-37737008 None:intergenic 50.0%
TGCTTTCTGCATGAGCCCTT+AGG - chr1_1:37737754-37737773 Msa0021300:intron 50.0%
GCTTTCTGCATGAGCCCTTA+GGG - chr1_1:37737755-37737774 Msa0021300:intron 50.0%
CGGAATAGAGCAAACCTGTC+AGG - chr1_1:37737839-37737858 Msa0021300:CDS 50.0%
AGCAAACCTGTCAGGCATTC+AGG - chr1_1:37737847-37737866 Msa0021300:CDS 50.0%
CAGGCATTCAGGAACCAGTT+AGG - chr1_1:37737858-37737877 Msa0021300:CDS 50.0%
CTTGAGGACGCCAAACCAAA+AGG + chr1_1:37737905-37737924 None:intergenic 50.0%
! CCCTGTCTCTAGGAGATAGT+AGG + chr1_1:37737967-37737986 None:intergenic 50.0%
TCAGGGTTTACCCTGTCTCT+AGG + chr1_1:37737977-37737996 None:intergenic 50.0%
AACCCTGACCCCGAATAGTA+CGG - chr1_1:37737989-37738008 Msa0021300:intron 50.0%
AACCGTACTATTCGGGGTCA+GGG + chr1_1:37737994-37738013 None:intergenic 50.0%
AAACCGTACTATTCGGGGTC+AGG + chr1_1:37737995-37738014 None:intergenic 50.0%
TGACCCCGAATAGTACGGTT+TGG - chr1_1:37737994-37738013 Msa0021300:intron 50.0%
ACATGCAGCAACCCACTGAA+AGG + chr1_1:37738431-37738450 None:intergenic 50.0%
! CGTACTCTCCGTTGATGAGA+AGG - chr1_1:37738490-37738509 Msa0021300:intron 50.0%
TCCAGGTTCACTTTCAAGGG+CGG + chr1_1:37738844-37738863 None:intergenic 50.0%
! CGGCAAAGCACTAGTTGGTA+AGG + chr1_1:37739056-37739075 None:intergenic 50.0%
CTGGTGAGCCATGCAACATA+AGG + chr1_1:37739191-37739210 None:intergenic 50.0%
GTTTGGGCACATACAGAGCA+TGG - chr1_1:37739309-37739328 Msa0021300:CDS 50.0%
TTGGGCACATACAGAGCATG+GGG - chr1_1:37739311-37739330 Msa0021300:CDS 50.0%
ATGAGTGCAGCATCAGTGCC+AGG - chr1_1:37735795-37735814 Msa0021300:intron 55.0%
GGCTCTTTCGTCGGATTGCT+TGG - chr1_1:37735904-37735923 Msa0021300:intron 55.0%
! GGATTGCTTGGCATCGAGTG+AGG - chr1_1:37735916-37735935 Msa0021300:intron 55.0%
CTGGTTCCTGAATGCCTGAC+AGG + chr1_1:37737856-37737875 None:intergenic 55.0%
GTGCAGCATCAGTGCCAGGA+AGG - chr1_1:37735799-37735818 Msa0021300:intron 60.0%
! TGCTTGGCATCGAGTGAGGC+AGG - chr1_1:37735920-37735939 Msa0021300:intron 60.0%
! GCAAGCAGGGCATTCACGTC+TGG + chr1_1:37738039-37738058 None:intergenic 60.0%
TCAAGGGCGGCAATGCTGCA+TGG + chr1_1:37738831-37738850 None:intergenic 60.0%
GCCGCCCTTGAAAGTGAACC+TGG - chr1_1:37738840-37738859 Msa0021300:CDS 60.0%
TGCATGGCTCACCAGTCCCA+TGG - chr1_1:37739196-37739215 Msa0021300:CDS 60.0%
TGGCATGTCTGCCATGGGAC+TGG + chr1_1:37739210-37739229 None:intergenic 60.0%
!! TCACCACTCTGAGGTCGAGG+AGG + chr1_1:37739255-37739274 None:intergenic 60.0%
!! GCTTCACCACTCTGAGGTCG+AGG + chr1_1:37739258-37739277 None:intergenic 60.0%
GAGCCTCCTCGACCTCAGAG+TGG - chr1_1:37739249-37739268 Msa0021300:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 37734997 37739712 37734997 ID=Msa0021300;Name=Msa0021300
chr1_1 mRNA 37734997 37739712 37734997 ID=Msa0021300-mRNA-1;Parent=Msa0021300;Name=Msa0021300-mRNA-1;_AED=0.13;_eAED=0.13;_QI=72|1|1|1|1|1|8|583|510
chr1_1 exon 37734997 37735738 37734997 ID=Msa0021300-mRNA-1:exon:11821;Parent=Msa0021300-mRNA-1
chr1_1 exon 37735825 37735873 37735825 ID=Msa0021300-mRNA-1:exon:11820;Parent=Msa0021300-mRNA-1
chr1_1 exon 37736148 37736273 37736148 ID=Msa0021300-mRNA-1:exon:11819;Parent=Msa0021300-mRNA-1
chr1_1 exon 37737246 37737343 37737246 ID=Msa0021300-mRNA-1:exon:11818;Parent=Msa0021300-mRNA-1
chr1_1 exon 37737470 37737550 37737470 ID=Msa0021300-mRNA-1:exon:11817;Parent=Msa0021300-mRNA-1
chr1_1 exon 37737666 37737737 37737666 ID=Msa0021300-mRNA-1:exon:11816;Parent=Msa0021300-mRNA-1
chr1_1 exon 37737820 37737894 37737820 ID=Msa0021300-mRNA-1:exon:11815;Parent=Msa0021300-mRNA-1
chr1_1 exon 37738768 37739712 37738768 ID=Msa0021300-mRNA-1:exon:11814;Parent=Msa0021300-mRNA-1
chr1_1 five_prime_UTR 37739641 37739712 37739641 ID=Msa0021300-mRNA-1:five_prime_utr;Parent=Msa0021300-mRNA-1
chr1_1 CDS 37738768 37739640 37738768 ID=Msa0021300-mRNA-1:cds;Parent=Msa0021300-mRNA-1
chr1_1 CDS 37737820 37737894 37737820 ID=Msa0021300-mRNA-1:cds;Parent=Msa0021300-mRNA-1
chr1_1 CDS 37737666 37737737 37737666 ID=Msa0021300-mRNA-1:cds;Parent=Msa0021300-mRNA-1
chr1_1 CDS 37737470 37737550 37737470 ID=Msa0021300-mRNA-1:cds;Parent=Msa0021300-mRNA-1
chr1_1 CDS 37737246 37737343 37737246 ID=Msa0021300-mRNA-1:cds;Parent=Msa0021300-mRNA-1
chr1_1 CDS 37736148 37736273 37736148 ID=Msa0021300-mRNA-1:cds;Parent=Msa0021300-mRNA-1
chr1_1 CDS 37735825 37735873 37735825 ID=Msa0021300-mRNA-1:cds;Parent=Msa0021300-mRNA-1
chr1_1 CDS 37735580 37735738 37735580 ID=Msa0021300-mRNA-1:cds;Parent=Msa0021300-mRNA-1
chr1_1 three_prime_UTR 37734997 37735579 37734997 ID=Msa0021300-mRNA-1:three_prime_utr;Parent=Msa0021300-mRNA-1
Gene Sequence

>Msa0021300

ATGCCATTTATTCTTCAACTTCATCCTTGTAATTCTTCCTTATGCTTCAACTGCAACTCCTTCATTTTCAGCAAGAAATCATATAAGAAAGTTTGTTCTTTTCCCAATATTGTTCTTTCCACTCCTCATGGTTCAATTGTTTCTAAGAAAGTTTCTATTTTGAGCAATACCCACTTCAAGTTTTGCTCTAAAAATGGTGGGTTTGATGAGGTTTCAAGTGATTTAGCTGGAGAAGCCATTGATGATGAAATTCAAGTTGAGTTGTTGAACAAGCCGTCACCTGTTTTGGAAGTTGAGATGGAACAAGAGAAGCCTTCTGAAGAGGAAGCTTTGGCACCTTTTTTTAAGTTTTTCAAAGGTAGTAAAGATTATGTGAAGGAGGTTGACGAAGATAATGAGGTATTAGAACTGGAAGTTTCTGAACAAAAAGATGGTGTGAGTGATGAGGTTGAAAAAGAAGATGAAGAAAAAGAAGGAGAAGATAAGAAGGTTAATGTTGAGTACTATGAGCCAAAACCTGGTGATTTTGTTGTTGGTGTTGTTGTTTCAGGTAATGAAAACAAGCTTGATGTAAATGTTGGAGCAGATTTACTAGGTACAATGTTAACCAAGGAAGTGCTTCCTTTGAATGGTAAAGAAATGGATCATTTGTTATGTGATGTGAACAAGGATGCGGAGAATTTTACGGTTCAACGGAAGATGGGAATTGTAAAGAATGATGAAGTAATGAGTGCAGCATCAGTGCCAGGAAGGCCTGTTGTAGAAACTGGAACCATTTTGTTTGCTGAGGTTTTAGGTAGAACACTTAGTGGTAGACCGTTGATTTCTACTAGAAGGCTCTTTCGTCGGATTGCTTGGCATCGAGTGAGGCAGATACAACAGCTCAATGAACCTATCGAGGTTAGAATTACAGAGTGGAATACTGGTGGTCTGCTAACAACGATTGAGGGTTTACGAGCTTTCCTACCCAAAGCTGAGCTTGTGACAAGAGTAAATAGCTTTACTGAATTGAAAGAAAATGTGGGGCGTCGTATGTATGTAGAAATTACTCGAATAGATGAAGCAAAAAATTCTTTGGTGCTTAGTGAAAAGGGAGCTTGGGAAAAGGCATATCTTCGTGAAGGGACACTTTTAGACGGAACCGTAAAAAAGATCTTTCCATATGGAGCACAAATTAAGATTGGGAAAACTAACAGAAGTGGGTTGCTGCATGTTTCAAATATCACTCGAGCTGAAGTTACTTCTGTCAGTGACGTACTCTCCGTTGATGAGAAGGTTAAGGCTCTTGTTGTGAGGTCAATGTTCCCCGATAAAATCTCTCTGAGCATTGCCGCCCTTGAAAGTGAACCTGGACTTTTTCTTTCAAATAAAGAGAGAGTATTTATGGAAGCTGATATGATGGCAAAGAAATATAAACAAAAGCTACCTCCTCCTATTGTCTCTACAAAATTAGGACCCTTACCAACTAGTGCTTTGCCGTTTGAAAATGAAGCACTTTATGCAAACCGGAAGTGGTTTAAGTTTGAAAAATGA

Protein sequence

>Msa0021300

MPFILQLHPCNSSLCFNCNSFIFSKKSYKKVCSFPNIVLSTPHGSIVSKKVSILSNTHFKFCSKNGGFDEVSSDLAGEAIDDEIQVELLNKPSPVLEVEMEQEKPSEEEALAPFFKFFKGSKDYVKEVDEDNEVLELEVSEQKDGVSDEVEKEDEEKEGEDKKVNVEYYEPKPGDFVVGVVVSGNENKLDVNVGADLLGTMLTKEVLPLNGKEMDHLLCDVNKDAENFTVQRKMGIVKNDEVMSAASVPGRPVVETGTILFAEVLGRTLSGRPLISTRRLFRRIAWHRVRQIQQLNEPIEVRITEWNTGGLLTTIEGLRAFLPKAELVTRVNSFTELKENVGRRMYVEITRIDEAKNSLVLSEKGAWEKAYLREGTLLDGTVKKIFPYGAQIKIGKTNRSGLLHVSNITRAEVTSVSDVLSVDEKVKALVVRSMFPDKISLSIAALESEPGLFLSNKERVFMEADMMAKKYKQKLPPPIVSTKLGPLPTSALPFENEALYANRKWFKFEK*