AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0624220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0624220 MtrunA17_Chr8g0358961 94.273 227 13 0 1 227 1 227 1.10e-163 451
Msa0624220 MtrunA17_Chr4g0058821 40.556 180 98 4 39 215 23 196 1.08e-31 115
Msa0624220 MtrunA17_Chr8g0368391 33.654 208 124 5 13 215 5 203 5.27e-30 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0624220 AT1G17100.1 60.396 202 75 2 25 221 30 231 4.58e-89 262
Msa0624220 AT1G78450.1 48.214 224 103 4 4 222 1 216 1.76e-70 215
Msa0624220 AT1G78460.1 39.827 231 113 5 4 220 1 219 5.43e-49 160

Find 77 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAATGGTAAATTGATAAA+AGG 0.212029 4_3:+2198800 None:intergenic
GACGTTATAATTCGTCTGTT+TGG 0.282437 4_3:-2198585 Msa0624220:CDS
AAGCTACTAGAACTGGTTTC+CGG 0.298026 4_3:-2198525 Msa0624220:CDS
TAGGCTATTTGATTACATTC+AGG 0.303343 4_3:-2197521 Msa0624220:CDS
TCTTATCTCAATTTCATTAT+CGG 0.305130 4_3:-2198695 Msa0624220:CDS
TAATTCAGTAATAAGTGTTT+TGG 0.305738 4_3:-2196883 Msa0624220:three_prime_UTR
TTCTTGTTTGATCTGGAAAA+TGG 0.306508 4_3:-2197121 Msa0624220:CDS
GGATTTGCTTGGTTCACTTT+TGG 0.319811 4_3:+2197388 None:intergenic
TGAACATGAAGACCCTTTGC+AGG 0.347285 4_3:+2197361 None:intergenic
AATGTCTTGAATAGGAGAAT+TGG 0.347748 4_3:+2198558 None:intergenic
AACTTACATAACATACTATC+TGG 0.380641 4_3:+2197051 None:intergenic
CTTATCTCAATTTCATTATC+GGG 0.383040 4_3:-2198694 Msa0624220:CDS
CTTGTTGAAGCTACTAGAAC+TGG 0.386778 4_3:-2198532 Msa0624220:CDS
ACAAATGAAGACTCACAAAA+TGG 0.387846 4_3:+2197427 None:intergenic
ACCCTATTATCGTATTCAAA+AGG 0.389319 4_3:+2197157 None:intergenic
AGCTTCTATGACATCATAGT+TGG 0.390370 4_3:+2198627 None:intergenic
CTGAAGCATGACCAGCTCTA+TGG 0.399888 4_3:+2197206 None:intergenic
ACAAGAGAAATGTCTTGAAT+AGG 0.403479 4_3:+2198550 None:intergenic
GATATGGTTCTTGTTTGATC+TGG 0.407224 4_3:-2197128 Msa0624220:CDS
CCCTATTATCGTATTCAAAA+GGG 0.409052 4_3:+2197158 None:intergenic
ACAGCCATGGATTGCATGCT+TGG 0.416699 4_3:+2198754 None:intergenic
AGAATGGTAAATTGATAAAA+GGG 0.418250 4_3:+2198801 None:intergenic
TACTATCTGGAATTTGTGAA+TGG 0.426802 4_3:+2197064 None:intergenic
GAATTAATTGATCATGCCTT+CGG 0.437522 4_3:+2196671 None:intergenic
TTCTCAAATATTGATGTGGC+AGG 0.445417 4_3:-2196651 Msa0624220:three_prime_UTR
AGGCTATTTGATTACATTCA+GGG 0.450840 4_3:-2197520 Msa0624220:CDS
TGAAGACCCTTTGCAGGTGG+TGG 0.452104 4_3:+2197367 None:intergenic
GGAGTTTGTGAATTATGTTA+AGG 0.453586 4_3:+2198775 None:intergenic
TTGCAGGTGGTGGATTTGCT+TGG 0.453762 4_3:+2197377 None:intergenic
AACTATGATGTCATAGAAGC+TGG 0.463929 4_3:-2198625 Msa0624220:CDS
GCGTTGAAGGACAGTATTGC+CGG 0.472222 4_3:-2197259 Msa0624220:CDS
ATAATAGGGTGAATGAGATA+TGG 0.475621 4_3:-2197144 Msa0624220:CDS
TGAGCTAGCATCAGCGTTGA+AGG 0.486594 4_3:-2197272 Msa0624220:CDS
GATGTCATAGAAGCTGGAAA+TGG 0.490076 4_3:-2198619 Msa0624220:CDS
TGAATTGATAAATAAAGTGC+AGG 0.491035 4_3:-2196971 Msa0624220:three_prime_UTR
GCAGAATCCCATATAAATGA+TGG 0.499567 4_3:+2196622 None:intergenic
AGCAAATCCACCACCTGCAA+AGG 0.503511 4_3:-2197374 Msa0624220:CDS
CCATGGTTGCTTGGAAGGAA+AGG 0.505085 4_3:+2196762 None:intergenic
TATGCAGCAGTTAAACAGTT+TGG 0.507098 4_3:-2197322 Msa0624220:CDS
AGGGTCTTCATGTTCAAAGA+TGG 0.509198 4_3:-2197354 Msa0624220:CDS
GCAGCAGTTAAACAGTTTGG+TGG 0.512495 4_3:-2197319 Msa0624220:CDS
TAATTGATCATGCCTTCGGT+TGG 0.517033 4_3:+2196675 None:intergenic
TGTAGGTTGCCATGGTTGCT+TGG 0.530659 4_3:+2196753 None:intergenic
GGTTGCCATGGTTGCTTGGA+AGG 0.534058 4_3:+2196757 None:intergenic
GGTAAGACTTCAGAGAGAAC+AGG 0.536541 4_3:+2197460 None:intergenic
AACTCCAAGCATGCAATCCA+TGG 0.545237 4_3:-2198758 Msa0624220:exon
GGACACTCTATGCGTTTGCA+TGG 0.549178 4_3:+2198649 None:intergenic
GCAAATCCACCACCTGCAAA+GGG 0.549447 4_3:-2197373 Msa0624220:CDS
GCTTCTATGACATCATAGTT+GGG 0.553146 4_3:+2198628 None:intergenic
TCACAAAATGGTCCATCACT+TGG 0.562399 4_3:+2197439 None:intergenic
TCTGAAGTCTTACCAAGTGA+TGG 0.564116 4_3:-2197451 Msa0624220:CDS
TGCCTTAAAATCTTTCCAAG+TGG 0.564221 4_3:-2196828 Msa0624220:three_prime_UTR
GGAGAAAGTGTAGGTTGCCA+TGG 0.567270 4_3:+2196745 None:intergenic
GGCTATTTGATTACATTCAG+GGG 0.574090 4_3:-2197519 Msa0624220:CDS
TGTTGTGGTGGTTACAGCCA+TGG 0.575258 4_3:+2198741 None:intergenic
AGGCTCACACTTGGTACCAT+CGG 0.585741 4_3:+2196782 None:intergenic
CTCACACTTGGTACCATCGG+TGG 0.588332 4_3:+2196785 None:intergenic
AGCAGAAGACCACTTAGTAC+CGG 0.588835 4_3:+2197240 None:intergenic
AATTATGTTAAGGAACAGAA+TGG 0.589911 4_3:+2198785 None:intergenic
TGGAAGGAAAGGCTCACACT+TGG 0.591600 4_3:+2196773 None:intergenic
TTAATTCTCAAATATTGATG+TGG 0.595008 4_3:-2196655 Msa0624220:three_prime_UTR
ATTGAACAAAGCCATAGAGC+TGG 0.606780 4_3:-2197217 Msa0624220:CDS
TCACACTTGGTACCATCGGT+GGG 0.608306 4_3:+2196786 None:intergenic
CGATGACAAGGAGAAAGTGT+AGG 0.608595 4_3:+2196736 None:intergenic
TTTGTCAAAGATACAGATGT+TGG 0.611111 4_3:-2197295 Msa0624220:CDS
CCTTTCCTTCCAAGCAACCA+TGG 0.611308 4_3:-2196762 Msa0624220:three_prime_UTR
ACAGTATTGCCGGTACTAAG+TGG 0.612734 4_3:-2197249 Msa0624220:CDS
CAATATATTTGTCCAACCGA+AGG 0.614323 4_3:-2196687 Msa0624220:three_prime_UTR
ATGTTCCCTAAAATTCCACT+TGG 0.621066 4_3:+2196813 None:intergenic
CCTATTATCGTATTCAAAAG+GGG 0.621839 4_3:+2197159 None:intergenic
TATGGGATTCTGCTTTGTCG+CGG 0.622393 4_3:-2196612 Msa0624220:three_prime_UTR
CAGTGAGAGCTTCAATGTTG+TGG 0.636610 4_3:+2198726 None:intergenic
GGGAACATCAGTCCCACCGA+TGG 0.659685 4_3:-2196798 Msa0624220:three_prime_UTR
ATTGAATTGAATCGATGACA+AGG 0.668060 4_3:+2196724 None:intergenic
TGAGAGCTTCAATGTTGTGG+TGG 0.673155 4_3:+2198729 None:intergenic
CTACTAGAACTGGTTTCCGG+AGG 0.693581 4_3:-2198522 Msa0624220:intron
ACATGAAGACCCTTTGCAGG+TGG 0.699868 4_3:+2197364 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTTGAATACATATAAAA+GGG - chr4_3:2197134-2197153 Msa0624220:CDS 15.0%
!! AAAGTTGAATACATATAAAA+GGG - chr4_3:2197134-2197153 Msa0624220:CDS 15.0%
!! AGAATGGTAAATTGATAAAA+GGG + chr4_3:2196612-2196631 None:intergenic 20.0%
!! TCTTATCTCAATTTCATTAT+CGG - chr4_3:2196715-2196734 Msa0624220:three_prime_UTR 20.0%
!!! AGTTTTTTCAGTAATAGTTT+AGG - chr4_3:2196930-2196949 Msa0624220:three_prime_UTR 20.0%
!! GAAAGTTGAATACATATAAA+AGG - chr4_3:2197133-2197152 Msa0624220:CDS 20.0%
!! TTTAGTGTAATTACAAATGT+CGG - chr4_3:2197282-2197301 Msa0624220:CDS 20.0%
!! AATGTGAAATGATTTATACT+TGG - chr4_3:2197590-2197609 Msa0624220:intron 20.0%
!!! AAATTAATCATCTCTAGAAT+TGG + chr4_3:2197667-2197686 None:intergenic 20.0%
!!! TCAATCTTTTTCTTTTTCTT+AGG - chr4_3:2197870-2197889 Msa0624220:intron 20.0%
!!! TAATTCAGTAATAAGTGTTT+TGG - chr4_3:2198527-2198546 Msa0624220:CDS 20.0%
!! TTAATTCTCAAATATTGATG+TGG - chr4_3:2198755-2198774 Msa0624220:exon 20.0%
!! AGAATGGTAAATTGATAAAA+GGG + chr4_3:2196612-2196631 None:intergenic 20.0%
!! TCTTATCTCAATTTCATTAT+CGG - chr4_3:2196715-2196734 Msa0624220:three_prime_UTR 20.0%
!!! AGTTTTTTCAGTAATAGTTT+AGG - chr4_3:2196930-2196949 Msa0624220:three_prime_UTR 20.0%
!! GAAAGTTGAATACATATAAA+AGG - chr4_3:2197133-2197152 Msa0624220:CDS 20.0%
!! TTTAGTGTAATTACAAATGT+CGG - chr4_3:2197282-2197301 Msa0624220:CDS 20.0%
!! AATGTGAAATGATTTATACT+TGG - chr4_3:2197590-2197609 Msa0624220:intron 20.0%
!!! AAATTAATCATCTCTAGAAT+TGG + chr4_3:2197667-2197686 None:intergenic 20.0%
!!! TCAATCTTTTTCTTTTTCTT+AGG - chr4_3:2197870-2197889 Msa0624220:intron 20.0%
!!! TAATTCAGTAATAAGTGTTT+TGG - chr4_3:2198527-2198546 Msa0624220:CDS 20.0%
!! TTAATTCTCAAATATTGATG+TGG - chr4_3:2198755-2198774 Msa0624220:exon 20.0%
!!! TGATAAAAGGGTTTTTTCTA+TGG + chr4_3:2196600-2196619 None:intergenic 25.0%
! CAGAATGGTAAATTGATAAA+AGG + chr4_3:2196613-2196632 None:intergenic 25.0%
! AATTATGTTAAGGAACAGAA+TGG + chr4_3:2196628-2196647 None:intergenic 25.0%
! CTTATCTCAATTTCATTATC+GGG - chr4_3:2196716-2196735 Msa0624220:three_prime_UTR 25.0%
! GTAAAAAAACAAATTACCTC+CGG + chr4_3:2196907-2196926 None:intergenic 25.0%
! TTTCAAATTATTAGCTGTGT+CGG + chr4_3:2197250-2197269 None:intergenic 25.0%
! AACTAATTCTAACTTGAAGT+TGG + chr4_3:2197382-2197401 None:intergenic 25.0%
!!! ACAATTGATTTTAGCATGTT+TGG + chr4_3:2197703-2197722 None:intergenic 25.0%
! ATGCTAAAATCAATTGTTTC+TGG - chr4_3:2197706-2197725 Msa0624220:intron 25.0%
! TGAACTTATTGATCATTCAT+TGG + chr4_3:2197776-2197795 None:intergenic 25.0%
!!! AAGTTTTAATGAAGTGTTTG+TGG - chr4_3:2197810-2197829 Msa0624220:intron 25.0%
! AACTTACATAACATACTATC+TGG + chr4_3:2198362-2198381 None:intergenic 25.0%
! TGAATTGATAAATAAAGTGC+AGG - chr4_3:2198439-2198458 Msa0624220:intron 25.0%
!!! TGATAAAAGGGTTTTTTCTA+TGG + chr4_3:2196600-2196619 None:intergenic 25.0%
! CAGAATGGTAAATTGATAAA+AGG + chr4_3:2196613-2196632 None:intergenic 25.0%
! AATTATGTTAAGGAACAGAA+TGG + chr4_3:2196628-2196647 None:intergenic 25.0%
! CTTATCTCAATTTCATTATC+GGG - chr4_3:2196716-2196735 Msa0624220:three_prime_UTR 25.0%
! GTAAAAAAACAAATTACCTC+CGG + chr4_3:2196907-2196926 None:intergenic 25.0%
! TTTCAAATTATTAGCTGTGT+CGG + chr4_3:2197250-2197269 None:intergenic 25.0%
! AACTAATTCTAACTTGAAGT+TGG + chr4_3:2197382-2197401 None:intergenic 25.0%
!!! ACAATTGATTTTAGCATGTT+TGG + chr4_3:2197703-2197722 None:intergenic 25.0%
! ATGCTAAAATCAATTGTTTC+TGG - chr4_3:2197706-2197725 Msa0624220:intron 25.0%
! TGAACTTATTGATCATTCAT+TGG + chr4_3:2197776-2197795 None:intergenic 25.0%
!!! AAGTTTTAATGAAGTGTTTG+TGG - chr4_3:2197810-2197829 Msa0624220:intron 25.0%
! AACTTACATAACATACTATC+TGG + chr4_3:2198362-2198381 None:intergenic 25.0%
! TGAATTGATAAATAAAGTGC+AGG - chr4_3:2198439-2198458 Msa0624220:intron 25.0%
GGAGTTTGTGAATTATGTTA+AGG + chr4_3:2196638-2196657 None:intergenic 30.0%
AATGTCTTGAATAGGAGAAT+TGG + chr4_3:2196855-2196874 None:intergenic 30.0%
ACAAGAGAAATGTCTTGAAT+AGG + chr4_3:2196863-2196882 None:intergenic 30.0%
!! GAGTTTGATTTTGACATGTT+TGG + chr4_3:2197437-2197456 None:intergenic 30.0%
GATCAAGTTTAGTAACTCTT+CGG + chr4_3:2197852-2197871 None:intergenic 30.0%
TAGGCTATTTGATTACATTC+AGG - chr4_3:2197889-2197908 Msa0624220:intron 30.0%
AGGCTATTTGATTACATTCA+GGG - chr4_3:2197890-2197909 Msa0624220:intron 30.0%
ACAAATGAAGACTCACAAAA+TGG + chr4_3:2197986-2198005 None:intergenic 30.0%
TTTGTCAAAGATACAGATGT+TGG - chr4_3:2198115-2198134 Msa0624220:intron 30.0%
CCTATTATCGTATTCAAAAG+GGG + chr4_3:2198254-2198273 None:intergenic 30.0%
CCCTATTATCGTATTCAAAA+GGG + chr4_3:2198255-2198274 None:intergenic 30.0%
! CCCTTTTGAATACGATAATA+GGG - chr4_3:2198252-2198271 Msa0624220:intron 30.0%
ACCCTATTATCGTATTCAAA+AGG + chr4_3:2198256-2198275 None:intergenic 30.0%
ATAATAGGGTGAATGAGATA+TGG - chr4_3:2198266-2198285 Msa0624220:intron 30.0%
! TTCTTGTTTGATCTGGAAAA+TGG - chr4_3:2198289-2198308 Msa0624220:intron 30.0%
! TACTATCTGGAATTTGTGAA+TGG + chr4_3:2198349-2198368 None:intergenic 30.0%
!! GTAATAAGTGTTTTGGATCT+TGG - chr4_3:2198534-2198553 Msa0624220:CDS 30.0%
! TTCCACTTGGAAAGATTTTA+AGG + chr4_3:2198587-2198606 None:intergenic 30.0%
! ATCTTTCCAAGTGGAATTTT+AGG - chr4_3:2198591-2198610 Msa0624220:CDS 30.0%
! TCTTTCCAAGTGGAATTTTA+GGG - chr4_3:2198592-2198611 Msa0624220:CDS 30.0%
ATTGAATTGAATCGATGACA+AGG + chr4_3:2198689-2198708 None:intergenic 30.0%
GAATTAATTGATCATGCCTT+CGG + chr4_3:2198742-2198761 None:intergenic 30.0%
! GTTTTCGCCATCATTTATAT+GGG - chr4_3:2198781-2198800 Msa0624220:five_prime_UTR 30.0%
GGAGTTTGTGAATTATGTTA+AGG + chr4_3:2196638-2196657 None:intergenic 30.0%
AATGTCTTGAATAGGAGAAT+TGG + chr4_3:2196855-2196874 None:intergenic 30.0%
ACAAGAGAAATGTCTTGAAT+AGG + chr4_3:2196863-2196882 None:intergenic 30.0%
!! GAGTTTGATTTTGACATGTT+TGG + chr4_3:2197437-2197456 None:intergenic 30.0%
GATCAAGTTTAGTAACTCTT+CGG + chr4_3:2197852-2197871 None:intergenic 30.0%
TAGGCTATTTGATTACATTC+AGG - chr4_3:2197889-2197908 Msa0624220:intron 30.0%
AGGCTATTTGATTACATTCA+GGG - chr4_3:2197890-2197909 Msa0624220:intron 30.0%
ACAAATGAAGACTCACAAAA+TGG + chr4_3:2197986-2198005 None:intergenic 30.0%
TTTGTCAAAGATACAGATGT+TGG - chr4_3:2198115-2198134 Msa0624220:intron 30.0%
CCTATTATCGTATTCAAAAG+GGG + chr4_3:2198254-2198273 None:intergenic 30.0%
CCCTATTATCGTATTCAAAA+GGG + chr4_3:2198255-2198274 None:intergenic 30.0%
! CCCTTTTGAATACGATAATA+GGG - chr4_3:2198252-2198271 Msa0624220:intron 30.0%
ACCCTATTATCGTATTCAAA+AGG + chr4_3:2198256-2198275 None:intergenic 30.0%
ATAATAGGGTGAATGAGATA+TGG - chr4_3:2198266-2198285 Msa0624220:intron 30.0%
! TTCTTGTTTGATCTGGAAAA+TGG - chr4_3:2198289-2198308 Msa0624220:intron 30.0%
! TACTATCTGGAATTTGTGAA+TGG + chr4_3:2198349-2198368 None:intergenic 30.0%
!! GTAATAAGTGTTTTGGATCT+TGG - chr4_3:2198534-2198553 Msa0624220:CDS 30.0%
! TTCCACTTGGAAAGATTTTA+AGG + chr4_3:2198587-2198606 None:intergenic 30.0%
! ATCTTTCCAAGTGGAATTTT+AGG - chr4_3:2198591-2198610 Msa0624220:CDS 30.0%
! TCTTTCCAAGTGGAATTTTA+GGG - chr4_3:2198592-2198611 Msa0624220:CDS 30.0%
ATTGAATTGAATCGATGACA+AGG + chr4_3:2198689-2198708 None:intergenic 30.0%
GAATTAATTGATCATGCCTT+CGG + chr4_3:2198742-2198761 None:intergenic 30.0%
! GTTTTCGCCATCATTTATAT+GGG - chr4_3:2198781-2198800 Msa0624220:five_prime_UTR 30.0%
GCTTCTATGACATCATAGTT+GGG + chr4_3:2196785-2196804 None:intergenic 35.0%
AGCTTCTATGACATCATAGT+TGG + chr4_3:2196786-2196805 None:intergenic 35.0%
AACTATGATGTCATAGAAGC+TGG - chr4_3:2196785-2196804 Msa0624220:three_prime_UTR 35.0%
GACGTTATAATTCGTCTGTT+TGG - chr4_3:2196825-2196844 Msa0624220:three_prime_UTR 35.0%
! TTAGTGTGTGTTTGGTTTCA+CGG + chr4_3:2197752-2197771 None:intergenic 35.0%
!! TCATTGGTTTAGTGTGTGTT+TGG + chr4_3:2197760-2197779 None:intergenic 35.0%
AGTTTAGTAACTCTTCGGAT+GGG + chr4_3:2197847-2197866 None:intergenic 35.0%
AAGTTTAGTAACTCTTCGGA+TGG + chr4_3:2197848-2197867 None:intergenic 35.0%
GGCTATTTGATTACATTCAG+GGG - chr4_3:2197891-2197910 Msa0624220:intron 35.0%
!!! CTGTCATCTCAATTTTTTGC+TGG + chr4_3:2197928-2197947 None:intergenic 35.0%
TATGCAGCAGTTAAACAGTT+TGG - chr4_3:2198088-2198107 Msa0624220:intron 35.0%
! CCCCTTTTGAATACGATAAT+AGG - chr4_3:2198251-2198270 Msa0624220:intron 35.0%
! GATATGGTTCTTGTTTGATC+TGG - chr4_3:2198282-2198301 Msa0624220:intron 35.0%
!! TAAGTGTTTTGGATCTTGGA+AGG - chr4_3:2198538-2198557 Msa0624220:CDS 35.0%
TGCCTTAAAATCTTTCCAAG+TGG - chr4_3:2198582-2198601 Msa0624220:CDS 35.0%
ATGTTCCCTAAAATTCCACT+TGG + chr4_3:2198600-2198619 None:intergenic 35.0%
CAATATATTTGTCCAACCGA+AGG - chr4_3:2198723-2198742 Msa0624220:CDS 35.0%
TTCTCAAATATTGATGTGGC+AGG - chr4_3:2198759-2198778 Msa0624220:exon 35.0%
! GGTTTTCGCCATCATTTATA+TGG - chr4_3:2198780-2198799 Msa0624220:five_prime_UTR 35.0%
GCAGAATCCCATATAAATGA+TGG + chr4_3:2198791-2198810 None:intergenic 35.0%
GCTTCTATGACATCATAGTT+GGG + chr4_3:2196785-2196804 None:intergenic 35.0%
AGCTTCTATGACATCATAGT+TGG + chr4_3:2196786-2196805 None:intergenic 35.0%
AACTATGATGTCATAGAAGC+TGG - chr4_3:2196785-2196804 Msa0624220:three_prime_UTR 35.0%
GACGTTATAATTCGTCTGTT+TGG - chr4_3:2196825-2196844 Msa0624220:three_prime_UTR 35.0%
! TTAGTGTGTGTTTGGTTTCA+CGG + chr4_3:2197752-2197771 None:intergenic 35.0%
!! TCATTGGTTTAGTGTGTGTT+TGG + chr4_3:2197760-2197779 None:intergenic 35.0%
AGTTTAGTAACTCTTCGGAT+GGG + chr4_3:2197847-2197866 None:intergenic 35.0%
AAGTTTAGTAACTCTTCGGA+TGG + chr4_3:2197848-2197867 None:intergenic 35.0%
GGCTATTTGATTACATTCAG+GGG - chr4_3:2197891-2197910 Msa0624220:intron 35.0%
!!! CTGTCATCTCAATTTTTTGC+TGG + chr4_3:2197928-2197947 None:intergenic 35.0%
TATGCAGCAGTTAAACAGTT+TGG - chr4_3:2198088-2198107 Msa0624220:intron 35.0%
! CCCCTTTTGAATACGATAAT+AGG - chr4_3:2198251-2198270 Msa0624220:intron 35.0%
! GATATGGTTCTTGTTTGATC+TGG - chr4_3:2198282-2198301 Msa0624220:intron 35.0%
!! TAAGTGTTTTGGATCTTGGA+AGG - chr4_3:2198538-2198557 Msa0624220:CDS 35.0%
TGCCTTAAAATCTTTCCAAG+TGG - chr4_3:2198582-2198601 Msa0624220:CDS 35.0%
ATGTTCCCTAAAATTCCACT+TGG + chr4_3:2198600-2198619 None:intergenic 35.0%
CAATATATTTGTCCAACCGA+AGG - chr4_3:2198723-2198742 Msa0624220:CDS 35.0%
TTCTCAAATATTGATGTGGC+AGG - chr4_3:2198759-2198778 Msa0624220:exon 35.0%
! GGTTTTCGCCATCATTTATA+TGG - chr4_3:2198780-2198799 Msa0624220:five_prime_UTR 35.0%
GCAGAATCCCATATAAATGA+TGG + chr4_3:2198791-2198810 None:intergenic 35.0%
GATGTCATAGAAGCTGGAAA+TGG - chr4_3:2196791-2196810 Msa0624220:three_prime_UTR 40.0%
CTTGTTGAAGCTACTAGAAC+TGG - chr4_3:2196878-2196897 Msa0624220:three_prime_UTR 40.0%
! AAGCTACTAGAACTGGTTTC+CGG - chr4_3:2196885-2196904 Msa0624220:three_prime_UTR 40.0%
GTGTTTGCTTCTAGTGTGAT+TGG - chr4_3:2197044-2197063 Msa0624220:three_prime_UTR 40.0%
GGGAGTTGAAAAATCATGTC+TGG - chr4_3:2197154-2197173 Msa0624220:CDS 40.0%
! TAATGAAGTGTTTGTGGTGC+TGG - chr4_3:2197816-2197835 Msa0624220:intron 40.0%
! TCTGAAGTCTTACCAAGTGA+TGG - chr4_3:2197959-2197978 Msa0624220:intron 40.0%
TCACAAAATGGTCCATCACT+TGG + chr4_3:2197974-2197993 None:intergenic 40.0%
!! GGATTTGCTTGGTTCACTTT+TGG + chr4_3:2198025-2198044 None:intergenic 40.0%
AGGGTCTTCATGTTCAAAGA+TGG - chr4_3:2198056-2198075 Msa0624220:intron 40.0%
ATTGAACAAAGCCATAGAGC+TGG - chr4_3:2198193-2198212 Msa0624220:intron 40.0%
TAATTGATCATGCCTTCGGT+TGG + chr4_3:2198738-2198757 None:intergenic 40.0%
GATGTCATAGAAGCTGGAAA+TGG - chr4_3:2196791-2196810 Msa0624220:three_prime_UTR 40.0%
CTTGTTGAAGCTACTAGAAC+TGG - chr4_3:2196878-2196897 Msa0624220:three_prime_UTR 40.0%
! AAGCTACTAGAACTGGTTTC+CGG - chr4_3:2196885-2196904 Msa0624220:three_prime_UTR 40.0%
GTGTTTGCTTCTAGTGTGAT+TGG - chr4_3:2197044-2197063 Msa0624220:three_prime_UTR 40.0%
GGGAGTTGAAAAATCATGTC+TGG - chr4_3:2197154-2197173 Msa0624220:CDS 40.0%
! TAATGAAGTGTTTGTGGTGC+TGG - chr4_3:2197816-2197835 Msa0624220:intron 40.0%
! TCTGAAGTCTTACCAAGTGA+TGG - chr4_3:2197959-2197978 Msa0624220:intron 40.0%
TCACAAAATGGTCCATCACT+TGG + chr4_3:2197974-2197993 None:intergenic 40.0%
!! GGATTTGCTTGGTTCACTTT+TGG + chr4_3:2198025-2198044 None:intergenic 40.0%
AGGGTCTTCATGTTCAAAGA+TGG - chr4_3:2198056-2198075 Msa0624220:intron 40.0%
ATTGAACAAAGCCATAGAGC+TGG - chr4_3:2198193-2198212 Msa0624220:intron 40.0%
TAATTGATCATGCCTTCGGT+TGG + chr4_3:2198738-2198757 None:intergenic 40.0%
AACTCCAAGCATGCAATCCA+TGG - chr4_3:2196652-2196671 Msa0624220:three_prime_UTR 45.0%
TGAGAGCTTCAATGTTGTGG+TGG + chr4_3:2196684-2196703 None:intergenic 45.0%
CAGTGAGAGCTTCAATGTTG+TGG + chr4_3:2196687-2196706 None:intergenic 45.0%
! ATGTCTGGAGCTATGAAGCA+CGG - chr4_3:2197169-2197188 Msa0624220:CDS 45.0%
ACTCTTCCCACTGTTTACGT+TGG - chr4_3:2197453-2197472 Msa0624220:CDS 45.0%
CTCTTCCCACTGTTTACGTT+GGG - chr4_3:2197454-2197473 Msa0624220:CDS 45.0%
CACTTCCCAACGTAAACAGT+GGG + chr4_3:2197462-2197481 None:intergenic 45.0%
ACACTTCCCAACGTAAACAG+TGG + chr4_3:2197463-2197482 None:intergenic 45.0%
GGTAAGACTTCAGAGAGAAC+AGG + chr4_3:2197953-2197972 None:intergenic 45.0%
TGAACATGAAGACCCTTTGC+AGG + chr4_3:2198052-2198071 None:intergenic 45.0%
GCAGCAGTTAAACAGTTTGG+TGG - chr4_3:2198091-2198110 Msa0624220:intron 45.0%
ACAGTATTGCCGGTACTAAG+TGG - chr4_3:2198161-2198180 Msa0624220:intron 45.0%
AGCAGAAGACCACTTAGTAC+CGG + chr4_3:2198173-2198192 None:intergenic 45.0%
! CGATGACAAGGAGAAAGTGT+AGG + chr4_3:2198677-2198696 None:intergenic 45.0%
TATGGGATTCTGCTTTGTCG+CGG - chr4_3:2198798-2198817 Msa0624220:five_prime_UTR 45.0%
AACTCCAAGCATGCAATCCA+TGG - chr4_3:2196652-2196671 Msa0624220:three_prime_UTR 45.0%
TGAGAGCTTCAATGTTGTGG+TGG + chr4_3:2196684-2196703 None:intergenic 45.0%
CAGTGAGAGCTTCAATGTTG+TGG + chr4_3:2196687-2196706 None:intergenic 45.0%
! ATGTCTGGAGCTATGAAGCA+CGG - chr4_3:2197169-2197188 Msa0624220:CDS 45.0%
ACTCTTCCCACTGTTTACGT+TGG - chr4_3:2197453-2197472 Msa0624220:CDS 45.0%
CTCTTCCCACTGTTTACGTT+GGG - chr4_3:2197454-2197473 Msa0624220:CDS 45.0%
CACTTCCCAACGTAAACAGT+GGG + chr4_3:2197462-2197481 None:intergenic 45.0%
ACACTTCCCAACGTAAACAG+TGG + chr4_3:2197463-2197482 None:intergenic 45.0%
GGTAAGACTTCAGAGAGAAC+AGG + chr4_3:2197953-2197972 None:intergenic 45.0%
TGAACATGAAGACCCTTTGC+AGG + chr4_3:2198052-2198071 None:intergenic 45.0%
GCAGCAGTTAAACAGTTTGG+TGG - chr4_3:2198091-2198110 Msa0624220:intron 45.0%
ACAGTATTGCCGGTACTAAG+TGG - chr4_3:2198161-2198180 Msa0624220:intron 45.0%
AGCAGAAGACCACTTAGTAC+CGG + chr4_3:2198173-2198192 None:intergenic 45.0%
! CGATGACAAGGAGAAAGTGT+AGG + chr4_3:2198677-2198696 None:intergenic 45.0%
TATGGGATTCTGCTTTGTCG+CGG - chr4_3:2198798-2198817 Msa0624220:five_prime_UTR 45.0%
! ACAGCCATGGATTGCATGCT+TGG + chr4_3:2196659-2196678 None:intergenic 50.0%
TGTTGTGGTGGTTACAGCCA+TGG + chr4_3:2196672-2196691 None:intergenic 50.0%
GGACACTCTATGCGTTTGCA+TGG + chr4_3:2196764-2196783 None:intergenic 50.0%
! CTACTAGAACTGGTTTCCGG+AGG - chr4_3:2196888-2196907 Msa0624220:three_prime_UTR 50.0%
GCTGGGATACGTCTAATTCG+AGG - chr4_3:2197314-2197333 Msa0624220:CDS 50.0%
!! GAGGAGTGTCTGTGCTTCAT+AGG - chr4_3:2197333-2197352 Msa0624220:CDS 50.0%
GTGTCTGTGCTTCATAGGTC+TGG - chr4_3:2197338-2197357 Msa0624220:CDS 50.0%
TCTGTGCTTCATAGGTCTGG+AGG - chr4_3:2197341-2197360 Msa0624220:CDS 50.0%
! GTGTGTGTTTGGTTTCACGG+TGG + chr4_3:2197749-2197768 None:intergenic 50.0%
!! TTGCAGGTGGTGGATTTGCT+TGG + chr4_3:2198036-2198055 None:intergenic 50.0%
AGCAAATCCACCACCTGCAA+AGG - chr4_3:2198036-2198055 Msa0624220:intron 50.0%
GCAAATCCACCACCTGCAAA+GGG - chr4_3:2198037-2198056 Msa0624220:intron 50.0%
ACATGAAGACCCTTTGCAGG+TGG + chr4_3:2198049-2198068 None:intergenic 50.0%
! TGAGCTAGCATCAGCGTTGA+AGG - chr4_3:2198138-2198157 Msa0624220:intron 50.0%
GCGTTGAAGGACAGTATTGC+CGG - chr4_3:2198151-2198170 Msa0624220:intron 50.0%
CTGAAGCATGACCAGCTCTA+TGG + chr4_3:2198207-2198226 None:intergenic 50.0%
TCACACTTGGTACCATCGGT+GGG + chr4_3:2198627-2198646 None:intergenic 50.0%
AGGCTCACACTTGGTACCAT+CGG + chr4_3:2198631-2198650 None:intergenic 50.0%
TGGAAGGAAAGGCTCACACT+TGG + chr4_3:2198640-2198659 None:intergenic 50.0%
CCATGGTTGCTTGGAAGGAA+AGG + chr4_3:2198651-2198670 None:intergenic 50.0%
CCTTTCCTTCCAAGCAACCA+TGG - chr4_3:2198648-2198667 Msa0624220:CDS 50.0%
TGTAGGTTGCCATGGTTGCT+TGG + chr4_3:2198660-2198679 None:intergenic 50.0%
! GGAGAAAGTGTAGGTTGCCA+TGG + chr4_3:2198668-2198687 None:intergenic 50.0%
! ACAGCCATGGATTGCATGCT+TGG + chr4_3:2196659-2196678 None:intergenic 50.0%
TGTTGTGGTGGTTACAGCCA+TGG + chr4_3:2196672-2196691 None:intergenic 50.0%
GGACACTCTATGCGTTTGCA+TGG + chr4_3:2196764-2196783 None:intergenic 50.0%
! CTACTAGAACTGGTTTCCGG+AGG - chr4_3:2196888-2196907 Msa0624220:three_prime_UTR 50.0%
GCTGGGATACGTCTAATTCG+AGG - chr4_3:2197314-2197333 Msa0624220:CDS 50.0%
!! GAGGAGTGTCTGTGCTTCAT+AGG - chr4_3:2197333-2197352 Msa0624220:CDS 50.0%
GTGTCTGTGCTTCATAGGTC+TGG - chr4_3:2197338-2197357 Msa0624220:CDS 50.0%
TCTGTGCTTCATAGGTCTGG+AGG - chr4_3:2197341-2197360 Msa0624220:CDS 50.0%
! GTGTGTGTTTGGTTTCACGG+TGG + chr4_3:2197749-2197768 None:intergenic 50.0%
!! TTGCAGGTGGTGGATTTGCT+TGG + chr4_3:2198036-2198055 None:intergenic 50.0%
AGCAAATCCACCACCTGCAA+AGG - chr4_3:2198036-2198055 Msa0624220:intron 50.0%
GCAAATCCACCACCTGCAAA+GGG - chr4_3:2198037-2198056 Msa0624220:intron 50.0%
ACATGAAGACCCTTTGCAGG+TGG + chr4_3:2198049-2198068 None:intergenic 50.0%
! TGAGCTAGCATCAGCGTTGA+AGG - chr4_3:2198138-2198157 Msa0624220:intron 50.0%
GCGTTGAAGGACAGTATTGC+CGG - chr4_3:2198151-2198170 Msa0624220:intron 50.0%
CTGAAGCATGACCAGCTCTA+TGG + chr4_3:2198207-2198226 None:intergenic 50.0%
TCACACTTGGTACCATCGGT+GGG + chr4_3:2198627-2198646 None:intergenic 50.0%
AGGCTCACACTTGGTACCAT+CGG + chr4_3:2198631-2198650 None:intergenic 50.0%
TGGAAGGAAAGGCTCACACT+TGG + chr4_3:2198640-2198659 None:intergenic 50.0%
CCATGGTTGCTTGGAAGGAA+AGG + chr4_3:2198651-2198670 None:intergenic 50.0%
CCTTTCCTTCCAAGCAACCA+TGG - chr4_3:2198648-2198667 Msa0624220:CDS 50.0%
TGTAGGTTGCCATGGTTGCT+TGG + chr4_3:2198660-2198679 None:intergenic 50.0%
! GGAGAAAGTGTAGGTTGCCA+TGG + chr4_3:2198668-2198687 None:intergenic 50.0%
GGAGCTATGAAGCACGGATG+CGG - chr4_3:2197175-2197194 Msa0624220:CDS 55.0%
CACGAACACCGAACACGACA+CGG - chr4_3:2197199-2197218 Msa0624220:CDS 55.0%
!! AAATGTCGGTGTCGTGTCGC+TGG - chr4_3:2197296-2197315 Msa0624220:CDS 55.0%
!! AATGTCGGTGTCGTGTCGCT+GGG - chr4_3:2197297-2197316 Msa0624220:CDS 55.0%
TGAAGACCCTTTGCAGGTGG+TGG + chr4_3:2198046-2198065 None:intergenic 55.0%
CTCACACTTGGTACCATCGG+TGG + chr4_3:2198628-2198647 None:intergenic 55.0%
GGTTGCCATGGTTGCTTGGA+AGG + chr4_3:2198656-2198675 None:intergenic 55.0%
GGAGCTATGAAGCACGGATG+CGG - chr4_3:2197175-2197194 Msa0624220:CDS 55.0%
CACGAACACCGAACACGACA+CGG - chr4_3:2197199-2197218 Msa0624220:CDS 55.0%
!! AAATGTCGGTGTCGTGTCGC+TGG - chr4_3:2197296-2197315 Msa0624220:CDS 55.0%
!! AATGTCGGTGTCGTGTCGCT+GGG - chr4_3:2197297-2197316 Msa0624220:CDS 55.0%
TGAAGACCCTTTGCAGGTGG+TGG + chr4_3:2198046-2198065 None:intergenic 55.0%
CTCACACTTGGTACCATCGG+TGG + chr4_3:2198628-2198647 None:intergenic 55.0%
GGTTGCCATGGTTGCTTGGA+AGG + chr4_3:2198656-2198675 None:intergenic 55.0%
CGTGGTGTCCGTGTCGTGTT+CGG + chr4_3:2197210-2197229 None:intergenic 60.0%
ACGACACGGACACCACGACA+CGG - chr4_3:2197213-2197232 Msa0624220:CDS 60.0%
GGGAACATCAGTCCCACCGA+TGG - chr4_3:2198612-2198631 Msa0624220:CDS 60.0%
CGTGGTGTCCGTGTCGTGTT+CGG + chr4_3:2197210-2197229 None:intergenic 60.0%
ACGACACGGACACCACGACA+CGG - chr4_3:2197213-2197232 Msa0624220:CDS 60.0%
GGGAACATCAGTCCCACCGA+TGG - chr4_3:2198612-2198631 Msa0624220:CDS 60.0%
GCGTGTCAGTGTCCGTGTCG+TGG + chr4_3:2197228-2197247 None:intergenic 65.0%
GCGTGTCAGTGTCCGTGTCG+TGG + chr4_3:2197228-2197247 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 2196581 2198851 2196581 ID=Msa0624220;Name=Msa0624220
chr4_3 mRNA 2196581 2198851 2196581 ID=Msa0624220-mRNA-1;Parent=Msa0624220;Name=Msa0624220-mRNA-1;_AED=0.34;_eAED=0.34;_QI=81|1|1|1|1|1|2|524|227
chr4_3 exon 2196581 2197540 2196581 ID=Msa0624220-mRNA-1:exon:607;Parent=Msa0624220-mRNA-1
chr4_3 exon 2198523 2198851 2198523 ID=Msa0624220-mRNA-1:exon:606;Parent=Msa0624220-mRNA-1
chr4_3 five_prime_UTR 2198771 2198851 2198771 ID=Msa0624220-mRNA-1:five_prime_utr;Parent=Msa0624220-mRNA-1
chr4_3 CDS 2198523 2198770 2198523 ID=Msa0624220-mRNA-1:cds;Parent=Msa0624220-mRNA-1
chr4_3 CDS 2197105 2197540 2197105 ID=Msa0624220-mRNA-1:cds;Parent=Msa0624220-mRNA-1
chr4_3 three_prime_UTR 2196581 2197104 2196581 ID=Msa0624220-mRNA-1:three_prime_utr;Parent=Msa0624220-mRNA-1
Gene Sequence

>Msa0624220

ATGCAATCCATGGCTGTAACCACCACAACATTGAAGCTCTCACTGTTCTTGACTCTTATCTCAATTTCATTATCGGGTATTCTTTCATATGATATTATACCATGCAAACGCATAGAGTGTCCCAACTATGATGTCATAGAAGCTGGAAATGGCTATGAAATCAGACGTTATAATTCGTCTGTTTGGATTTCCAATTCTCCTATTCAAGACATTTCTCTTGTTGAAGCTACTAGAACTGGTTTCCGGAGGCTATTTGATTACATTCAGGGGAAGAACAACTACCAGCAAAAAATTGAGATGACAGCACCTGTTCTCTCTGAAGTCTTACCAAGTGATGGACCATTTTGTGAGTCTTCATTTGTTGTCAGCTTTTATGTACCAAAAGTGAACCAAGCAAATCCACCACCTGCAAAGGGTCTTCATGTTCAAAGATGGAAATCTGTGTATGCAGCAGTTAAACAGTTTGGTGGATTTGTCAAAGATACAGATGTTGGTGAGCTAGCATCAGCGTTGAAGGACAGTATTGCCGGTACTAAGTGGTCTTCTGCTATTGAACAAAGCCATAGAGCTGGTCATGCTTCAGTTTACTCTGTTGCTCAGTACAATGCCCCTTTTGAATACGATAATAGGGTGAATGAGATATGGTTCTTGTTTGATCTGGAAAATGGTTTGCATTCTATGTGA

Protein sequence

>Msa0624220

MQSMAVTTTTLKLSLFLTLISISLSGILSYDIIPCKRIECPNYDVIEAGNGYEIRRYNSSVWISNSPIQDISLVEATRTGFRRLFDYIQGKNNYQQKIEMTAPVLSEVLPSDGPFCESSFVVSFYVPKVNQANPPPAKGLHVQRWKSVYAAVKQFGGFVKDTDVGELASALKDSIAGTKWSSAIEQSHRAGHASVYSVAQYNAPFEYDNRVNEIWFLFDLENGLHSM*