Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1154190 | XP_024627183.1 | 85.556 | 90 | 5 | 2 | 29 | 118 | 89 | 170 | 3.05e-39 | 151 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1154190 | A0A072UBS1 | 85.556 | 90 | 5 | 2 | 29 | 118 | 89 | 170 | 1.61e-39 | 151 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005500 | Msa1154190 | 0.833035 | 6.719725e-56 | -8.615850e-47 |
| Msa0025060 | Msa1154190 | 0.812604 | 3.898736e-51 | -8.615850e-47 |
| Msa0030710 | Msa1154190 | 0.808156 | 3.557062e-50 | -8.615850e-47 |
| Msa0072590 | Msa1154190 | 0.802435 | 5.618675e-49 | -8.615850e-47 |
| Msa0078110 | Msa1154190 | 0.804175 | 2.450921e-49 | -8.615850e-47 |
| Msa0081700 | Msa1154190 | 0.801683 | 8.020177e-49 | -8.615850e-47 |
| Msa0083200 | Msa1154190 | 0.819069 | 1.409299e-52 | -8.615850e-47 |
| Msa0608280 | Msa1154190 | 0.819216 | 1.305004e-52 | -8.615850e-47 |
| Msa0622930 | Msa1154190 | 0.831796 | 1.362105e-55 | -8.615850e-47 |
| Msa0629030 | Msa1154190 | -0.830630 | 2.635654e-55 | -8.615850e-47 |
| Msa0654500 | Msa1154190 | 0.810432 | 1.156085e-50 | -8.615850e-47 |
| Msa0655080 | Msa1154190 | 0.801776 | 7.676833e-49 | -8.615850e-47 |
| Msa0666580 | Msa1154190 | -0.828855 | 7.130001e-55 | -8.615850e-47 |
| Msa0691350 | Msa1154190 | 0.815505 | 8.933943e-52 | -8.615850e-47 |
| Msa0700430 | Msa1154190 | 0.832870 | 7.386599e-56 | -8.615850e-47 |
| Msa0707870 | Msa1154190 | 0.800094 | 1.693089e-48 | -8.615850e-47 |
| Msa0721260 | Msa1154190 | -0.807418 | 5.103268e-50 | -8.615850e-47 |
| Msa0728230 | Msa1154190 | -0.805263 | 1.452687e-49 | -8.615850e-47 |
| Msa0728570 | Msa1154190 | -0.804732 | 1.875325e-49 | -8.615850e-47 |
| Msa0741600 | Msa1154190 | 0.811832 | 5.746809e-51 | -8.615850e-47 |
| Msa0742690 | Msa1154190 | 0.834965 | 2.208852e-56 | -8.615850e-47 |
| Msa0744550 | Msa1154190 | -0.806596 | 7.616791e-50 | -8.615850e-47 |
| Msa0744560 | Msa1154190 | -0.800136 | 1.660267e-48 | -8.615850e-47 |
| Msa0753410 | Msa1154190 | -0.802764 | 4.806059e-49 | -8.615850e-47 |
| Msa0779830 | Msa1154190 | 0.846627 | 1.928974e-59 | -8.615850e-47 |
| Msa0826360 | Msa1154190 | -0.813055 | 3.105819e-51 | -8.615850e-47 |
| Msa0826370 | Msa1154190 | -0.814286 | 1.664577e-51 | -8.615850e-47 |
| Msa0827560 | Msa1154190 | 0.847865 | 8.822368e-60 | -8.615850e-47 |
| Msa0168680 | Msa1154190 | 0.813578 | 2.383901e-51 | -8.615850e-47 |
| Msa0183960 | Msa1154190 | 0.801398 | 9.174879e-49 | -8.615850e-47 |
| Msa0194370 | Msa1154190 | 0.836371 | 9.729459e-57 | -8.615850e-47 |
| Msa0198140 | Msa1154190 | 0.806085 | 9.762921e-50 | -8.615850e-47 |
| Msa0198220 | Msa1154190 | 0.800005 | 1.765487e-48 | -8.615850e-47 |
| Msa0200090 | Msa1154190 | -0.807629 | 4.603579e-50 | -8.615850e-47 |
| Msa0232170 | Msa1154190 | 0.814157 | 1.777217e-51 | -8.615850e-47 |
| Msa0412480 | Msa1154190 | 0.801121 | 1.045501e-48 | -8.615850e-47 |
| Msa0421080 | Msa1154190 | -0.809079 | 2.259044e-50 | -8.615850e-47 |
| Msa0480540 | Msa1154190 | -0.805029 | 1.625822e-49 | -8.615850e-47 |
| Msa0480550 | Msa1154190 | -0.800651 | 1.303886e-48 | -8.615850e-47 |
| Msa0998900 | Msa1154190 | 0.810145 | 1.333360e-50 | -8.615850e-47 |
| Msa1018210 | Msa1154190 | 0.810340 | 1.210044e-50 | -8.615850e-47 |
| Msa1023430 | Msa1154190 | -0.807454 | 5.016170e-50 | -8.615850e-47 |
| Msa1034040 | Msa1154190 | 0.842430 | 2.597942e-58 | -8.615850e-47 |
| Msa1057940 | Msa1154190 | 0.800914 | 1.152730e-48 | -8.615850e-47 |
| Msa1061840 | Msa1154190 | -0.817907 | 2.584778e-52 | -8.615850e-47 |
| Msa0258280 | Msa1154190 | 0.808139 | 3.586277e-50 | -8.615850e-47 |
| Msa0274000 | Msa1154190 | 0.815392 | 9.463909e-52 | -8.615850e-47 |
| Msa0314620 | Msa1154190 | 0.818092 | 2.347662e-52 | -8.615850e-47 |
| Msa1107510 | Msa1154190 | -0.821963 | 3.052224e-53 | -8.615850e-47 |
| Msa1129130 | Msa1154190 | 0.817457 | 3.264787e-52 | -8.615850e-47 |
| Msa1129470 | Msa1154190 | 0.810668 | 1.028189e-50 | -8.615850e-47 |
| Msa1151070 | Msa1154190 | -0.807630 | 4.602206e-50 | -8.615850e-47 |
| Msa1154190 | Msa1192790 | 0.859731 | 3.376966e-63 | -8.615850e-47 |
| Msa1154190 | Msa1203090 | 0.821264 | 4.429506e-53 | -8.615850e-47 |
| Msa1154190 | Msa1221520 | -0.850399 | 1.741919e-60 | -8.615850e-47 |
| Msa1154190 | Msa1235960 | 0.817750 | 2.804335e-52 | -8.615850e-47 |
| Msa1154190 | Msa1235990 | 0.821941 | 3.088212e-53 | -8.615850e-47 |
| Msa1154190 | Msa1264940 | -0.832321 | 1.010497e-55 | -8.615850e-47 |
| Msa1154190 | Msa1303150 | -0.844427 | 7.610943e-59 | -8.615850e-47 |
| Msa1154190 | Msa1304980 | -0.808287 | 3.336085e-50 | -8.615850e-47 |
| Msa1154190 | Msa1316090 | 0.822990 | 1.762474e-53 | -8.615850e-47 |
| Msa1154190 | Msa1327400 | 0.863137 | 3.086050e-64 | -8.615850e-47 |
| Msa1154190 | Msa1327420 | 0.862671 | 4.295914e-64 | -8.615850e-47 |
| Msa1154190 | Msa1334000 | -0.846293 | 2.379076e-59 | -8.615850e-47 |
| Msa1154190 | Msa1344870 | 0.811091 | 8.325373e-51 | -8.615850e-47 |
| Msa1154190 | Msa1389990 | 0.810357 | 1.199749e-50 | -8.615850e-47 |
| Msa1154190 | Msa1398110 | -0.801341 | 9.424571e-49 | -8.615850e-47 |
| Msa1154190 | Msa1414560 | 0.802873 | 4.562097e-49 | -8.615850e-47 |
| Msa1154190 | Msa1433060 | 0.801609 | 8.307717e-49 | -8.615850e-47 |
| Msa1154190 | Msa1459930 | -0.815062 | 1.120694e-51 | -8.615850e-47 |
| Msa0554770 | Msa1154190 | 0.814199 | 1.739692e-51 | -8.615850e-47 |
| Msa0559440 | Msa1154190 | 0.818272 | 2.137799e-52 | -8.615850e-47 |
| Msa0559640 | Msa1154190 | 0.806665 | 7.365826e-50 | -8.615850e-47 |
| Msa0561750 | Msa1154190 | 0.803580 | 3.257376e-49 | -8.615850e-47 |
| Msa0564000 | Msa1154190 | 0.805613 | 1.226815e-49 | -8.615850e-47 |
| Msa0577290 | Msa1154190 | 0.830687 | 2.552300e-55 | -8.615850e-47 |
| Msa0862750 | Msa1154190 | 0.849024 | 4.215641e-60 | -8.615850e-47 |
| Msa0865810 | Msa1154190 | -0.801812 | 7.546277e-49 | -8.615850e-47 |
| Msa0865830 | Msa1154190 | -0.805217 | 1.485381e-49 | -8.615850e-47 |
| Msa0870220 | Msa1154190 | 0.808627 | 2.822873e-50 | -8.615850e-47 |
| Msa0874750 | Msa1154190 | -0.811536 | 6.667389e-51 | -8.615850e-47 |
| Msa0879940 | Msa1154190 | 0.821033 | 5.005904e-53 | -8.615850e-47 |
| Msa0903460 | Msa1154190 | 0.809182 | 2.146757e-50 | -8.615850e-47 |
| Msa0933050 | Msa1154190 | 0.812426 | 4.264218e-51 | -8.615850e-47 |
| Msa0933500 | Msa1154190 | 0.800318 | 1.524853e-48 | -8.615850e-47 |
| Msa0935930 | Msa1154190 | 0.803822 | 2.901943e-49 | -8.615850e-47 |
| Msa0947420 | Msa1154190 | -0.813710 | 2.229589e-51 | -8.615850e-47 |
| Msa0956580 | Msa1154190 | 0.810797 | 9.638972e-51 | -8.615850e-47 |
| Msa0970940 | Msa1154190 | 0.819748 | 9.867165e-53 | -8.615850e-47 |
| Msa0976400 | Msa1154190 | -0.801808 | 7.561070e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1154190 | MtrunA17_Chr7g0245151 | 85.556 | 90 | 5 | 2 | 29 | 118 | 89 | 170 | 3.09e-43 | 151 |
| Msa1154190 | MtrunA17_Chr7g0245161 | 38.406 | 138 | 37 | 4 | 24 | 118 | 189 | 321 | 5.97e-15 | 71.6 |
| Msa1154190 | MtrunA17_Chr7g0245161 | 44.944 | 89 | 18 | 1 | 19 | 76 | 23 | 111 | 8.68e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 57 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAGAATAATGTCGATATT+AGG | 0.174392 | 7_4:+41551730 | Msa1154190:CDS |
| GGGTTGGAGAAACAGTTATT+AGG | 0.235636 | 7_4:+41551751 | Msa1154190:CDS |
| ACTTATCACAAATTAAATAA+TGG | 0.246592 | 7_4:+41554068 | Msa1154190:three_prime_UTR |
| CCCTTTCTCTTTCCCTCCTC+AGG | 0.285741 | 7_4:-41554212 | None:intergenic |
| CTTATCACAAATTAAATAAT+GGG | 0.324911 | 7_4:+41554069 | Msa1154190:three_prime_UTR |
| GGTTGGAGAAACAGTTATTA+GGG | 0.339456 | 7_4:+41551752 | Msa1154190:CDS |
| TTTCTGATGTAATATTTAAC+AGG | 0.342356 | 7_4:+41554017 | Msa1154190:three_prime_UTR |
| ATTGGGATTGTGATTGGAAT+TGG | 0.345975 | 7_4:+41551949 | Msa1154190:CDS |
| TTCACATTCAGATCTTTGTT+TGG | 0.349137 | 7_4:-41551984 | None:intergenic |
| CAAGAATAATGTCGATATTA+GGG | 0.359056 | 7_4:+41551731 | Msa1154190:CDS |
| TCACATTCAGATCTTTGTTT+GGG | 0.388978 | 7_4:-41551983 | None:intergenic |
| TTGGGATTGTGATTGGAATT+GGG | 0.403296 | 7_4:+41551950 | Msa1154190:CDS |
| GATCTGAATGTGAATTTCAA+TGG | 0.423691 | 7_4:+41551993 | Msa1154190:CDS |
| TTGTTGTGTGGTAGAGAGAA+AGG | 0.440754 | 7_4:+41554238 | Msa1154190:three_prime_UTR |
| GTGAGGATTGGGATTGTGAT+TGG | 0.445103 | 7_4:+41551943 | Msa1154190:CDS |
| TTCAATCAGAGATCAAAATC+AGG | 0.463274 | 7_4:+41551860 | Msa1154190:CDS |
| ACCTGAGGAGGGAAAGAGAA+AGG | 0.480844 | 7_4:+41554211 | Msa1154190:three_prime_UTR |
| GAGAGAAGGTGGGCTGGTGG+TGG | 0.489904 | 7_4:+41554170 | Msa1154190:three_prime_UTR |
| TTCAATGGACATCTGCCAAA+TGG | 0.490536 | 7_4:+41552008 | Msa1154190:CDS |
| TGGGCTGGTGGTGGTTTGTG+TGG | 0.490677 | 7_4:+41554179 | Msa1154190:three_prime_UTR |
| GAGGATGTGGTGAATTCAAA+CGG | 0.495412 | 7_4:+41551825 | Msa1154190:CDS |
| AGGATGTGGTGAATTCAAAC+GGG | 0.502741 | 7_4:+41551826 | Msa1154190:CDS |
| GCAAAGTGTGAGTGAGGATT+GGG | 0.505991 | 7_4:+41551932 | Msa1154190:CDS |
| CCTGAGGAGGGAAAGAGAAA+GGG | 0.507563 | 7_4:+41554212 | Msa1154190:three_prime_UTR |
| TCAGAAATCACGTAAAAGAA+TGG | 0.508663 | 7_4:-41554001 | None:intergenic |
| TGCTAATATTTCAGAGGATG+TGG | 0.509924 | 7_4:+41551812 | Msa1154190:CDS |
| GATCAAAATCAGGTGAATAA+CGG | 0.517027 | 7_4:+41551870 | Msa1154190:CDS |
| GGCAAAGTGTGAGTGAGGAT+TGG | 0.518868 | 7_4:+41551931 | Msa1154190:CDS |
| AATAATGTCGATATTAGGGT+TGG | 0.529892 | 7_4:+41551735 | Msa1154190:CDS |
| TGTTGTGTGGTAGAGAGAAA+GGG | 0.533577 | 7_4:+41554239 | Msa1154190:three_prime_UTR |
| GGATGGAGGATGATAAGAAA+AGG | 0.537485 | 7_4:+41551685 | None:intergenic |
| TCTGTCGGCAACCACCGCGC+TGG | 0.542346 | 7_4:-41553965 | None:intergenic |
| GATGATTGAATACTGAGGAC+TGG | 0.546461 | 7_4:+41554045 | Msa1154190:three_prime_UTR |
| TCAGGTGAATAACGGTAAAG+AGG | 0.548266 | 7_4:+41551878 | Msa1154190:CDS |
| AATGAAGAGAGAAGGTGGGC+TGG | 0.549481 | 7_4:+41554164 | Msa1154190:three_prime_UTR |
| TCTTCTAGTGAATGATGCTA+AGG | 0.552488 | 7_4:+41551782 | Msa1154190:CDS |
| CTGAGGAGGGAAAGAGAAAG+GGG | 0.589007 | 7_4:+41554213 | Msa1154190:three_prime_UTR |
| GTGGTGAATTCAAACGGGGA+TGG | 0.590057 | 7_4:+41551831 | Msa1154190:CDS |
| GAGAAAGGGGAGTTGTTGTG+TGG | 0.599803 | 7_4:+41554226 | Msa1154190:three_prime_UTR |
| CAACGAAGTGGAGGCAACAG+TGG | 0.601753 | 7_4:+41553933 | Msa1154190:CDS |
| TGGTAGAGAAGAACCTGAGG+AGG | 0.615897 | 7_4:+41554199 | Msa1154190:three_prime_UTR |
| GAAGAGAGAAGGTGGGCTGG+TGG | 0.620876 | 7_4:+41554167 | Msa1154190:three_prime_UTR |
| CGAGCATGCTAATATTTCAG+AGG | 0.626254 | 7_4:+41551806 | Msa1154190:CDS |
| TCATGGGCAAAGTGTGAGTG+AGG | 0.627639 | 7_4:+41551926 | Msa1154190:CDS |
| GGCTATCAGAGACACTCTGT+CGG | 0.640008 | 7_4:-41553980 | None:intergenic |
| CGAAGTGGAGGCAACAGTGG+AGG | 0.640895 | 7_4:+41553936 | Msa1154190:CDS |
| GTAGATGCATTACAACGAAG+TGG | 0.644234 | 7_4:+41553921 | Msa1154190:CDS |
| GGAGGCAAATTCCAGCGCGG+TGG | 0.656736 | 7_4:+41553954 | Msa1154190:CDS |
| GATGCATTACAACGAAGTGG+AGG | 0.668067 | 7_4:+41553924 | Msa1154190:CDS |
| TGATTGGAATTGGGATGCAG+AGG | 0.672333 | 7_4:+41551959 | Msa1154190:CDS |
| GGTAGAGAAGAACCTGAGGA+GGG | 0.680066 | 7_4:+41554200 | Msa1154190:three_prime_UTR |
| AACAAGATGATTGAATACTG+AGG | 0.683389 | 7_4:+41554040 | Msa1154190:three_prime_UTR |
| GTGTGGTAGAGAAGAACCTG+AGG | 0.699744 | 7_4:+41554196 | Msa1154190:three_prime_UTR |
| TGCTGCAAGTATGACAGTAG+TGG | 0.699875 | 7_4:+41553864 | Msa1154190:intron |
| GAGTAACATGAATAGAACTG+TGG | 0.719081 | 7_4:+41554104 | Msa1154190:three_prime_UTR |
| GGATGTGGTGAATTCAAACG+GGG | 0.747592 | 7_4:+41551827 | Msa1154190:CDS |
| AGTGGAGGCAAATTCCAGCG+CGG | 0.782186 | 7_4:+41553951 | Msa1154190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATAAAAAAAATACAC+GGG | + | chr7_4:41553399-41553418 | Msa1154190:intron | 10.0% |
| !! | TATTATGAAAAAAAATACAT+GGG | + | chr7_4:41553506-41553525 | Msa1154190:intron | 10.0% |
| !!! | AAATAGTCATCAATTTTTTT+TGG | - | chr7_4:41552543-41552562 | None:intergenic | 15.0% |
| !!! | AAAATTGATGACTATTTTAA+AGG | + | chr7_4:41552546-41552565 | Msa1154190:intron | 15.0% |
| !!! | AAATTGATGACTATTTTAAA+GGG | + | chr7_4:41552547-41552566 | Msa1154190:intron | 15.0% |
| !! | AAGTTGTAAAGTTAAAAAAA+TGG | - | chr7_4:41552721-41552740 | None:intergenic | 15.0% |
| !!! | TTTTTTAACTTTACAACTTT+TGG | + | chr7_4:41552722-41552741 | Msa1154190:intron | 15.0% |
| !!! | TTTTATAAAAAAAATACACG+GGG | + | chr7_4:41553400-41553419 | Msa1154190:intron | 15.0% |
| !!! | TTTTATGTAATTTATTTTGC+TGG | + | chr7_4:41553454-41553473 | Msa1154190:intron | 15.0% |
| !! | CTATTATGAAAAAAAATACA+TGG | + | chr7_4:41553505-41553524 | Msa1154190:intron | 15.0% |
| !! | ATTATGAAAAAAAATACATG+GGG | + | chr7_4:41553507-41553526 | Msa1154190:intron | 15.0% |
| !!! | TTCTTTTGATGAAAATAAAA+AGG | - | chr7_4:41553639-41553658 | None:intergenic | 15.0% |
| !! | ACTTATCACAAATTAAATAA+TGG | + | chr7_4:41554068-41554087 | Msa1154190:three_prime_UTR | 15.0% |
| !! | CTTATCACAAATTAAATAAT+GGG | + | chr7_4:41554069-41554088 | Msa1154190:three_prime_UTR | 15.0% |
| !! | TTATACTTGAAGTTAGAAAT+TGG | + | chr7_4:41552274-41552293 | Msa1154190:intron | 20.0% |
| !!! | ATCAATTTTTTTTGGAAACA+GGG | - | chr7_4:41552535-41552554 | None:intergenic | 20.0% |
| !!! | ACTATTTTAAAGGGTAATAT+TGG | + | chr7_4:41552556-41552575 | Msa1154190:intron | 20.0% |
| !! | ATAAAAGTTGGAATAACATT+GGG | - | chr7_4:41552645-41552664 | None:intergenic | 20.0% |
| !! | TATAAAAGTTGGAATAACAT+TGG | - | chr7_4:41552646-41552665 | None:intergenic | 20.0% |
| !!! | TATTCCAACTTTTATATTGA+AGG | + | chr7_4:41552650-41552669 | Msa1154190:intron | 20.0% |
| !!! | ATTCCAACTTTTATATTGAA+GGG | + | chr7_4:41552651-41552670 | Msa1154190:intron | 20.0% |
| !! | CAAAGATCAATAACAAATTA+TGG | + | chr7_4:41553020-41553039 | Msa1154190:intron | 20.0% |
| !! | GACAGAAATGAAAAAAAAAA+TGG | - | chr7_4:41553070-41553089 | None:intergenic | 20.0% |
| !! | TTCTATAGGAAAAAAATCAT+TGG | - | chr7_4:41553113-41553132 | None:intergenic | 20.0% |
| !! | ATGGTGATTAATAATTAAAC+AGG | + | chr7_4:41553164-41553183 | Msa1154190:intron | 20.0% |
| !!! | TATGTTTTTCCTTTCAAAAA+AGG | + | chr7_4:41553351-41553370 | Msa1154190:intron | 20.0% |
| !!! | AATAAAAAGGACTTTTTTGT+TGG | - | chr7_4:41553626-41553645 | None:intergenic | 20.0% |
| !!! | GTAAATATTAGATCTGATTT+TGG | - | chr7_4:41553800-41553819 | None:intergenic | 20.0% |
| !! | TTTCTGATGTAATATTTAAC+AGG | + | chr7_4:41554017-41554036 | Msa1154190:three_prime_UTR | 20.0% |
| ! | ACAAGAATAATGTCGATATT+AGG | + | chr7_4:41551730-41551749 | Msa1154190:CDS | 25.0% |
| ! | CAAGAATAATGTCGATATTA+GGG | + | chr7_4:41551731-41551750 | Msa1154190:CDS | 25.0% |
| !!! | CATACACATTTTTTACCATT+TGG | - | chr7_4:41552026-41552045 | None:intergenic | 25.0% |
| ! | TCAAGTATAATCAATTCTTG+AGG | - | chr7_4:41552264-41552283 | None:intergenic | 25.0% |
| ! | AATTGATTATGGCTAAAAGT+GGG | - | chr7_4:41552394-41552413 | None:intergenic | 25.0% |
| !!! | GATTTTGAGTGAATTGATTA+TGG | - | chr7_4:41552405-41552424 | None:intergenic | 25.0% |
| !!! | GACAGTTATATAATTTTGGT+AGG | - | chr7_4:41552513-41552532 | None:intergenic | 25.0% |
| !!! | CATCAATTTTTTTTGGAAAC+AGG | - | chr7_4:41552536-41552555 | None:intergenic | 25.0% |
| ! | ATAGAAAGAGAAGTAAAAGA+GGG | - | chr7_4:41552830-41552849 | None:intergenic | 25.0% |
| ! | AATAGAAAGAGAAGTAAAAG+AGG | - | chr7_4:41552831-41552850 | None:intergenic | 25.0% |
| ! | AATAACAAATTATGGCATCA+AGG | + | chr7_4:41553028-41553047 | Msa1154190:intron | 25.0% |
| ! | TCAATTTCTACTCTTTCTAT+AGG | - | chr7_4:41553127-41553146 | None:intergenic | 25.0% |
| ! | CTTCATCAAACATACAAATA+TGG | + | chr7_4:41553250-41553269 | Msa1154190:intron | 25.0% |
| !!! | CATGATTATCCTTTTTTGAA+AGG | - | chr7_4:41553363-41553382 | None:intergenic | 25.0% |
| !!! | TTAAATAATGGGTTTTGTAG+AGG | + | chr7_4:41554080-41554099 | Msa1154190:three_prime_UTR | 25.0% |
| AATAATGTCGATATTAGGGT+TGG | + | chr7_4:41551735-41551754 | Msa1154190:CDS | 30.0% | |
| TTCAATCAGAGATCAAAATC+AGG | + | chr7_4:41551860-41551879 | Msa1154190:CDS | 30.0% | |
| GATCAAAATCAGGTGAATAA+CGG | + | chr7_4:41551870-41551889 | Msa1154190:CDS | 30.0% | |
| ! | TCACATTCAGATCTTTGTTT+GGG | - | chr7_4:41551986-41552005 | None:intergenic | 30.0% |
| TTCACATTCAGATCTTTGTT+TGG | - | chr7_4:41551987-41552006 | None:intergenic | 30.0% | |
| GATCTGAATGTGAATTTCAA+TGG | + | chr7_4:41551993-41552012 | Msa1154190:CDS | 30.0% | |
| AAAACTGCGAAAGTCTATAT+TGG | - | chr7_4:41552060-41552079 | None:intergenic | 30.0% | |
| !! | TTCAAATGTTGATTCATGGA+GGG | + | chr7_4:41552117-41552136 | Msa1154190:intron | 30.0% |
| !! | TACACCTCTAGAATCAAATT+CGG | - | chr7_4:41552194-41552213 | None:intergenic | 30.0% |
| ! | AGAATTGACTCTTACATGTT+TGG | + | chr7_4:41552213-41552232 | Msa1154190:intron | 30.0% |
| AAGGTAAAGTGATTTATGGT+TGG | - | chr7_4:41552368-41552387 | None:intergenic | 30.0% | |
| GTTGAAGGTAAAGTGATTTA+TGG | - | chr7_4:41552372-41552391 | None:intergenic | 30.0% | |
| GAATTGATTATGGCTAAAAG+TGG | - | chr7_4:41552395-41552414 | None:intergenic | 30.0% | |
| ! | CAGGGACAGTTATATAATTT+TGG | - | chr7_4:41552517-41552536 | None:intergenic | 30.0% |
| ATGCCCTTCAATATAAAAGT+TGG | - | chr7_4:41552657-41552676 | None:intergenic | 30.0% | |
| TGAGTGAATCAATTAAGAGA+GGG | - | chr7_4:41552783-41552802 | None:intergenic | 30.0% | |
| TTGAGTGAATCAATTAAGAG+AGG | - | chr7_4:41552784-41552803 | None:intergenic | 30.0% | |
| TATTGATCTTTGTTGATCAC+TGG | - | chr7_4:41553012-41553031 | None:intergenic | 30.0% | |
| GGTAGAAAATGAAAAAAGAG+AGG | - | chr7_4:41553092-41553111 | None:intergenic | 30.0% | |
| AGTAGAAATTGAAAAGACAC+AGG | + | chr7_4:41553135-41553154 | Msa1154190:intron | 30.0% | |
| AATACAATGTCTTCTCTCTT+TGG | - | chr7_4:41553751-41553770 | None:intergenic | 30.0% | |
| !!! | CTTCATCTCTTCCTTTTTTT+CGG | - | chr7_4:41553902-41553921 | None:intergenic | 30.0% |
| TCAGAAATCACGTAAAAGAA+TGG | - | chr7_4:41554004-41554023 | None:intergenic | 30.0% | |
| AACAAGATGATTGAATACTG+AGG | + | chr7_4:41554040-41554059 | Msa1154190:three_prime_UTR | 30.0% | |
| !!! | TCTTCATTTTTTGCAAACTC+AGG | - | chr7_4:41554152-41554171 | None:intergenic | 30.0% |
| TTGCAAAAAATGAAGAGAGA+AGG | + | chr7_4:41554156-41554175 | Msa1154190:three_prime_UTR | 30.0% | |
| AAAAAATGAAGAGAGAAGGT+GGG | + | chr7_4:41554160-41554179 | Msa1154190:three_prime_UTR | 30.0% | |
| GGTTGGAGAAACAGTTATTA+GGG | + | chr7_4:41551752-41551771 | Msa1154190:CDS | 35.0% | |
| TCTTCTAGTGAATGATGCTA+AGG | + | chr7_4:41551782-41551801 | Msa1154190:CDS | 35.0% | |
| TGCTAATATTTCAGAGGATG+TGG | + | chr7_4:41551812-41551831 | Msa1154190:CDS | 35.0% | |
| !! | AGTTTTTGAGGACAACTCAT+GGG | + | chr7_4:41551910-41551929 | Msa1154190:CDS | 35.0% |
| ATTGGGATTGTGATTGGAAT+TGG | + | chr7_4:41551949-41551968 | Msa1154190:CDS | 35.0% | |
| TTGGGATTGTGATTGGAATT+GGG | + | chr7_4:41551950-41551969 | Msa1154190:CDS | 35.0% | |
| !! | CGACTTCAAATGTTGATTCA+TGG | + | chr7_4:41552113-41552132 | Msa1154190:intron | 35.0% |
| !! | CTTCAAATGTTGATTCATGG+AGG | + | chr7_4:41552116-41552135 | Msa1154190:intron | 35.0% |
| AAAGTGATTATGTGCACGTT+AGG | - | chr7_4:41552447-41552466 | None:intergenic | 35.0% | |
| ! | GTCAAGCTTTTTACCAACTT+CGG | + | chr7_4:41552602-41552621 | Msa1154190:intron | 35.0% |
| GAAAAGAACCACCGAAAAAA+AGG | + | chr7_4:41553888-41553907 | Msa1154190:CDS | 35.0% | |
| GAGTAACATGAATAGAACTG+TGG | + | chr7_4:41554104-41554123 | Msa1154190:three_prime_UTR | 35.0% | |
| CAAAAAATGAAGAGAGAAGG+TGG | + | chr7_4:41554159-41554178 | Msa1154190:three_prime_UTR | 35.0% | |
| GGGTTGGAGAAACAGTTATT+AGG | + | chr7_4:41551751-41551770 | Msa1154190:CDS | 40.0% | |
| CGAGCATGCTAATATTTCAG+AGG | + | chr7_4:41551806-41551825 | Msa1154190:CDS | 40.0% | |
| GAGGATGTGGTGAATTCAAA+CGG | + | chr7_4:41551825-41551844 | Msa1154190:CDS | 40.0% | |
| AGGATGTGGTGAATTCAAAC+GGG | + | chr7_4:41551826-41551845 | Msa1154190:CDS | 40.0% | |
| TCAGGTGAATAACGGTAAAG+AGG | + | chr7_4:41551878-41551897 | Msa1154190:CDS | 40.0% | |
| ! | AGGATTCTGCTGAGTTTTTG+AGG | + | chr7_4:41551898-41551917 | Msa1154190:CDS | 40.0% |
| !! | GAGTTTTTGAGGACAACTCA+TGG | + | chr7_4:41551909-41551928 | Msa1154190:CDS | 40.0% |
| TTCAATGGACATCTGCCAAA+TGG | + | chr7_4:41552008-41552027 | Msa1154190:CDS | 40.0% | |
| ! | CGAAAGTCTATATTGGTTGG+AGG | - | chr7_4:41552053-41552072 | None:intergenic | 40.0% |
| CTGCGAAAGTCTATATTGGT+TGG | - | chr7_4:41552056-41552075 | None:intergenic | 40.0% | |
| !! | TCTCCGGTTTCACTTTTAGA+GGG | + | chr7_4:41552167-41552186 | Msa1154190:intron | 40.0% |
| !! | TATGGCTAAAAGTGGGTTGA+AGG | - | chr7_4:41552387-41552406 | None:intergenic | 40.0% |
| TTGGAATAACATTGGGTCAG+AGG | - | chr7_4:41552638-41552657 | None:intergenic | 40.0% | |
| !!! | CATCTCTTCCTTTTTTTCGG+TGG | - | chr7_4:41553899-41553918 | None:intergenic | 40.0% |
| GTAGATGCATTACAACGAAG+TGG | + | chr7_4:41553921-41553940 | Msa1154190:CDS | 40.0% | |
| GATGATTGAATACTGAGGAC+TGG | + | chr7_4:41554045-41554064 | Msa1154190:three_prime_UTR | 40.0% | |
| TTGTTGTGTGGTAGAGAGAA+AGG | + | chr7_4:41554238-41554257 | Msa1154190:three_prime_UTR | 40.0% | |
| TGTTGTGTGGTAGAGAGAAA+GGG | + | chr7_4:41554239-41554258 | Msa1154190:three_prime_UTR | 40.0% | |
| GGATGTGGTGAATTCAAACG+GGG | + | chr7_4:41551827-41551846 | Msa1154190:CDS | 45.0% | |
| GCAAAGTGTGAGTGAGGATT+GGG | + | chr7_4:41551932-41551951 | Msa1154190:CDS | 45.0% | |
| GTGAGGATTGGGATTGTGAT+TGG | + | chr7_4:41551943-41551962 | Msa1154190:CDS | 45.0% | |
| TGATTGGAATTGGGATGCAG+AGG | + | chr7_4:41551959-41551978 | Msa1154190:CDS | 45.0% | |
| CGGAGACATACACATAGCTA+GGG | - | chr7_4:41552153-41552172 | None:intergenic | 45.0% | |
| CCTAGCTATGTGTATGTCTC+CGG | + | chr7_4:41552151-41552170 | Msa1154190:intron | 45.0% | |
| !! | GTCTCCGGTTTCACTTTTAG+AGG | + | chr7_4:41552166-41552185 | Msa1154190:intron | 45.0% |
| !! | CTCCGGTTTCACTTTTAGAG+GGG | + | chr7_4:41552168-41552187 | Msa1154190:intron | 45.0% |
| AGGTAGTGTAAGTCCGAAGT+TGG | - | chr7_4:41552618-41552637 | None:intergenic | 45.0% | |
| GAAAAGACACAGGATGCAGA+TGG | + | chr7_4:41553145-41553164 | Msa1154190:intron | 45.0% | |
| TGCTGCAAGTATGACAGTAG+TGG | + | chr7_4:41553864-41553883 | Msa1154190:intron | 45.0% | |
| GATGCATTACAACGAAGTGG+AGG | + | chr7_4:41553924-41553943 | Msa1154190:CDS | 45.0% | |
| !!! | ATTTTTATAAAAAAAATACA+CGG | + | chr7_4:41553398-41553417 | Msa1154190:intron | 5.0% |
| GTGGTGAATTCAAACGGGGA+TGG | + | chr7_4:41551831-41551850 | Msa1154190:CDS | 50.0% | |
| TCATGGGCAAAGTGTGAGTG+AGG | + | chr7_4:41551926-41551945 | Msa1154190:CDS | 50.0% | |
| GGCAAAGTGTGAGTGAGGAT+TGG | + | chr7_4:41551931-41551950 | Msa1154190:CDS | 50.0% | |
| CCGGAGACATACACATAGCT+AGG | - | chr7_4:41552154-41552173 | None:intergenic | 50.0% | |
| ! | GGCCCCTCTAAAAGTGAAAC+CGG | - | chr7_4:41552173-41552192 | None:intergenic | 50.0% |
| GGGGCCGAATTTGATTCTAG+AGG | + | chr7_4:41552187-41552206 | Msa1154190:intron | 50.0% | |
| GGCTATCAGAGACACTCTGT+CGG | - | chr7_4:41553983-41554002 | None:intergenic | 50.0% | |
| AATGAAGAGAGAAGGTGGGC+TGG | + | chr7_4:41554164-41554183 | Msa1154190:three_prime_UTR | 50.0% | |
| GTGTGGTAGAGAAGAACCTG+AGG | + | chr7_4:41554196-41554215 | Msa1154190:three_prime_UTR | 50.0% | |
| TGGTAGAGAAGAACCTGAGG+AGG | + | chr7_4:41554199-41554218 | Msa1154190:three_prime_UTR | 50.0% | |
| GGTAGAGAAGAACCTGAGGA+GGG | + | chr7_4:41554200-41554219 | Msa1154190:three_prime_UTR | 50.0% | |
| ACCTGAGGAGGGAAAGAGAA+AGG | + | chr7_4:41554211-41554230 | Msa1154190:three_prime_UTR | 50.0% | |
| CCTGAGGAGGGAAAGAGAAA+GGG | + | chr7_4:41554212-41554231 | Msa1154190:three_prime_UTR | 50.0% | |
| CTGAGGAGGGAAAGAGAAAG+GGG | + | chr7_4:41554213-41554232 | Msa1154190:three_prime_UTR | 50.0% | |
| GAGAAAGGGGAGTTGTTGTG+TGG | + | chr7_4:41554226-41554245 | Msa1154190:three_prime_UTR | 50.0% | |
| CAACGAAGTGGAGGCAACAG+TGG | + | chr7_4:41553933-41553952 | Msa1154190:CDS | 55.0% | |
| AGTGGAGGCAAATTCCAGCG+CGG | + | chr7_4:41553951-41553970 | Msa1154190:CDS | 55.0% | |
| CCCTTTCTCTTTCCCTCCTC+AGG | - | chr7_4:41554215-41554234 | None:intergenic | 55.0% | |
| CGAAGTGGAGGCAACAGTGG+AGG | + | chr7_4:41553936-41553955 | Msa1154190:CDS | 60.0% | |
| !! | GAAGAGAGAAGGTGGGCTGG+TGG | + | chr7_4:41554167-41554186 | Msa1154190:three_prime_UTR | 60.0% |
| !! | TGGGCTGGTGGTGGTTTGTG+TGG | + | chr7_4:41554179-41554198 | Msa1154190:three_prime_UTR | 60.0% |
| GGAGGCAAATTCCAGCGCGG+TGG | + | chr7_4:41553954-41553973 | Msa1154190:CDS | 65.0% | |
| !! | GAGAGAAGGTGGGCTGGTGG+TGG | + | chr7_4:41554170-41554189 | Msa1154190:three_prime_UTR | 65.0% |
| TCTGTCGGCAACCACCGCGC+TGG | - | chr7_4:41553968-41553987 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 41551687 | 41554341 | 41551687 | ID=Msa1154190;Name=Msa1154190 |
| chr7_4 | mRNA | 41551687 | 41554341 | 41551687 | ID=Msa1154190-mRNA-1;Parent=Msa1154190;Name=Msa1154190-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0|0.5|0.5|1|1|2|325|165 |
| chr7_4 | exon | 41551687 | 41552040 | 41551687 | ID=Msa1154190-mRNA-1:exon:10100;Parent=Msa1154190-mRNA-1 |
| chr7_4 | exon | 41553873 | 41554341 | 41553873 | ID=Msa1154190-mRNA-1:exon:10101;Parent=Msa1154190-mRNA-1 |
| chr7_4 | CDS | 41551687 | 41552040 | 41551687 | ID=Msa1154190-mRNA-1:cds;Parent=Msa1154190-mRNA-1 |
| chr7_4 | CDS | 41553873 | 41554016 | 41553873 | ID=Msa1154190-mRNA-1:cds;Parent=Msa1154190-mRNA-1 |
| chr7_4 | three_prime_UTR | 41554017 | 41554341 | 41554017 | ID=Msa1154190-mRNA-1:three_prime_utr;Parent=Msa1154190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
