AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0970940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0970940 MtrunA17_Chr6g0449891 97.613 419 9 1 6 424 1 418 0.0 825
Msa0970940 MtrunA17_Chr4g0058971 72.787 305 80 1 113 417 79 380 8.95e-162 460
Msa0970940 MtrunA17_Chr3g0117501 69.725 327 95 2 95 421 87 409 1.25e-157 451
Msa0970940 MtrunA17_Chr2g0288011 46.358 302 154 4 115 414 100 395 4.88e-76 242
Msa0970940 MtrunA17_Chr3g0097931 43.548 310 171 3 105 414 96 401 7.03e-74 236
Msa0970940 MtrunA17_Chr4g0074541 39.416 411 208 8 13 414 14 392 1.59e-73 235
Msa0970940 MtrunA17_Chr2g0291851 45.253 316 165 6 100 411 81 392 1.78e-72 233
Msa0970940 MtrunA17_Chr4g0046561 41.776 304 160 7 116 413 96 388 1.59e-67 220
Msa0970940 MtrunA17_Chr5g0419001 36.888 347 199 7 91 424 65 404 3.98e-62 206
Msa0970940 MtrunA17_Chr4g0008071 29.630 297 194 7 125 414 19 307 8.30e-24 100
Msa0970940 MtrunA17_Chr3g0114581 28.846 312 191 11 126 421 22 318 1.65e-23 100
Msa0970940 MtrunA17_Chr1g0160071 28.076 317 212 10 104 415 2 307 1.24e-22 98.2
Msa0970940 MtrunA17_Chr8g0382081 27.393 303 201 5 121 414 14 306 4.20e-21 93.2
Msa0970940 MtrunA17_Chr3g0112981 28.146 302 198 7 122 414 28 319 1.90e-19 88.6
Msa0970940 MtrunA17_Chr5g0436341 27.243 301 202 5 122 414 12 303 1.99e-17 82.4
Msa0970940 MtrunA17_Chr4g0056661 26.246 301 207 6 121 414 55 347 1.28e-15 77.8
Msa0970940 MtrunA17_Chr8g0341861 23.101 316 218 7 117 416 167 473 8.59e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0970940 AT3G01550.1 67.847 339 104 4 84 420 46 381 2.08e-153 439
Msa0970940 AT5G33320.1 59.169 409 143 8 14 421 22 407 3.95e-151 434
Msa0970940 AT3G01550.2 66.667 339 103 5 84 420 46 376 1.25e-146 422
Msa0970940 AT5G17630.1 42.188 384 211 8 35 416 32 406 3.26e-82 259
Msa0970940 AT5G54800.1 39.529 382 220 5 38 413 11 387 1.09e-75 241
Msa0970940 AT1G61800.1 39.231 390 199 9 36 414 26 388 8.26e-74 236
Msa0970940 AT1G61800.2 38.718 390 201 9 36 414 26 388 4.97e-72 232
Msa0970940 AT5G46110.4 38.700 323 185 8 96 413 83 397 3.71e-66 217
Msa0970940 AT5G46110.1 38.700 323 185 8 96 413 83 397 3.82e-66 217
Msa0970940 AT5G46110.2 40.550 291 162 7 126 413 2 284 5.94e-65 210
Msa0970940 AT5G46110.3 37.461 323 178 9 96 413 83 386 3.97e-60 201
Msa0970940 AT4G03950.1 30.592 304 141 11 119 416 18 257 2.18e-26 107
Msa0970940 AT1G21870.1 28.383 303 188 9 126 415 22 308 2.13e-23 100
Msa0970940 AT1G77610.1 28.814 295 197 9 126 415 16 302 1.89e-22 97.8
Msa0970940 AT3G10290.1 25.545 321 228 5 99 414 38 352 1.38e-21 95.9
Msa0970940 AT1G12500.1 27.401 354 224 8 82 414 12 353 1.75e-21 95.5
Msa0970940 AT5G05820.1 29.560 318 204 7 102 414 3 305 5.27e-21 93.2
Msa0970940 AT3G11320.1 29.338 317 204 7 103 414 4 305 5.83e-21 93.2
Msa0970940 AT5G04160.1 26.885 305 212 6 115 414 8 306 1.29e-20 92.4
Msa0970940 AT2G25520.1 26.959 319 211 9 105 413 3 309 5.82e-16 79.3
Msa0970940 AT1G43310.1 75.556 45 11 0 233 277 43 87 8.99e-16 72.8
Msa0970940 AT1G06470.4 24.611 321 215 8 121 423 77 388 3.09e-15 77.4
Msa0970940 AT1G06470.2 24.611 321 215 8 121 423 77 388 3.09e-15 77.4
Msa0970940 AT1G06470.1 24.611 321 215 8 121 423 77 388 3.09e-15 77.4
Msa0970940 AT1G06470.3 24.611 321 215 8 121 423 77 388 3.09e-15 77.4
Msa0970940 AT5G11230.1 26.332 319 213 9 105 413 3 309 1.56e-14 75.1
Msa0970940 AT4G32390.1 26.498 317 215 10 105 413 3 309 9.04e-14 72.8
Msa0970940 AT5G25400.1 25.532 329 223 9 105 424 3 318 1.01e-13 72.4

Find 82 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAACAGATGCCTACTTTA+TGG 0.163343 6_4:+2599160 Msa0970940:intron
TGTTCTTTCATCTCTTCTTT+TGG 0.166383 6_4:+2598462 Msa0970940:CDS
AATTATGCTTCCTTTGTCTT+TGG 0.270898 6_4:-2601731 None:intergenic
ATCATGAAGTAACCTTAAAA+AGG 0.272883 6_4:-2601899 None:intergenic
GAAGGGAAACAACAAACTTC+TGG 0.281220 6_4:+2596539 Msa0970940:CDS
CCACTTAGACTCACCATTGA+TGG 0.288106 6_4:+2596389 Msa0970940:CDS
TCTTCTCTTCTACCTATAGT+TGG 0.295688 6_4:+2599189 Msa0970940:CDS
CTTCTCTTCTACCTATAGTT+GGG 0.300468 6_4:+2599190 Msa0970940:CDS
AGGTTTGATGAGAGAAAATA+AGG 0.305575 6_4:-2596248 None:intergenic
TTGGTTTCATGTTTGCTACT+TGG 0.322424 6_4:+2596582 Msa0970940:CDS
CACTCACACCATCAAATCTA+TGG 0.327426 6_4:+2598423 Msa0970940:CDS
TGGAATGTTGTAACTGTTGC+TGG 0.349362 6_4:-2598113 None:intergenic
GCTTCCTTTGTCTTTGGCAC+TGG 0.363988 6_4:-2601725 None:intergenic
ATTTGGTGGCAGGTTTCATA+TGG 0.368164 6_4:+2601315 Msa0970940:intron
GCTATGTATAAGATCCGTTT+TGG 0.372703 6_4:+2600203 Msa0970940:CDS
CCTTCATCACTCTGTGCCTC+AGG 0.380559 6_4:-2596521 None:intergenic
CAAGACTAATGTTCGTCAAA+AGG 0.381792 6_4:-2598381 None:intergenic
GTTGTAACTGTTGCTGGAAA+TGG 0.381845 6_4:-2598107 None:intergenic
CGTTGGTGATCAATTTGATC+TGG 0.387811 6_4:+2598150 Msa0970940:CDS
TGACAGGTGAGACAGGAGTT+TGG 0.392266 6_4:-2601425 None:intergenic
CCAGTTCGGCTTTGCTTCGT+TGG 0.394551 6_4:+2598133 Msa0970940:CDS
GAAAGGTTCCATAGATTTGA+TGG 0.395306 6_4:-2598431 None:intergenic
CCAACGAAGCAAAGCCGAAC+TGG 0.401347 6_4:-2598133 None:intergenic
ACTTGCCGTGGCTCATACAT+TGG 0.405045 6_4:+2598354 Msa0970940:CDS
TTTCAACATTTACAACAAAC+AGG 0.406250 6_4:+2596622 Msa0970940:CDS
TGAACAGATGCCTACTTTAT+GGG 0.406348 6_4:+2599161 Msa0970940:intron
TTAACTCTTTCAAAAGAGTA+AGG 0.418575 6_4:+2601752 Msa0970940:three_prime_UTR
CTTGTTCAGTCTCTTCAGCT+TGG 0.421995 6_4:+2596563 Msa0970940:CDS
TGACTGAAGTCTCTTTCAAT+TGG 0.437171 6_4:+2599232 Msa0970940:CDS
TTTGGATTTGAAATGAAGAA+AGG 0.438772 6_4:-2596461 None:intergenic
AATTACATACCGCAGATTGC+AGG 0.448472 6_4:-2599850 None:intergenic
TATGTGGTTTGAAAGGTGTA+AGG 0.451066 6_4:-2596309 None:intergenic
GGAACTGCTATTGCACTTGT+TGG 0.456119 6_4:+2601668 Msa0970940:intron
GCTCTCGAACATTCAATCCT+TGG 0.458325 6_4:-2600182 None:intergenic
AAGGGAAACAACAAACTTCT+GGG 0.458763 6_4:+2596540 Msa0970940:CDS
GTCTCACCTGTCAATGCCCT+TGG 0.465418 6_4:+2601435 Msa0970940:CDS
CCTGAGGCACAGAGTGATGA+AGG 0.470545 6_4:+2596521 Msa0970940:CDS
TTCTCTTCTACCTATAGTTG+GGG 0.472836 6_4:+2599191 Msa0970940:CDS
ATGTTTCTGACAGGAAGCTT+TGG 0.475357 6_4:+2599730 Msa0970940:intron
ACCTCACCTGCTGGTATGCA+TGG 0.479845 6_4:-2600239 None:intergenic
TGCTGCTTCTTCTGTTCCTG+AGG 0.480346 6_4:+2596505 Msa0970940:CDS
ATATAGCATATGGTACCAAC+AGG 0.484432 6_4:-2599796 None:intergenic
GTTTGGTTATGTGGTTTGAA+AGG 0.492167 6_4:-2596316 None:intergenic
CCCTCCGAAAATATAGCATA+TGG 0.496477 6_4:-2599806 None:intergenic
CCGTGATTGATTCGTAAGGT+TGG 0.501913 6_4:-2599602 None:intergenic
AAAGAGAGAGAGATAGAGAG+AGG 0.505465 6_4:+2601776 Msa0970940:three_prime_UTR
CTTGCCGTGGCTCATACATT+GGG 0.506618 6_4:+2598355 Msa0970940:CDS
ACAGTTACAACATTCCAGTT+CGG 0.514414 6_4:+2598119 Msa0970940:CDS
GACTTACCAAGGGCATTGAC+AGG 0.516195 6_4:-2601441 None:intergenic
AGGTGTAAGGTTGAAGAAGA+AGG 0.521775 6_4:-2596296 None:intergenic
AGGGCATTGACAGGTGAGAC+AGG 0.524854 6_4:-2601432 None:intergenic
TTTGGTGGCAGGTTTCATAT+GGG 0.526674 6_4:+2601316 Msa0970940:intron
CATAGAGATTATGCATGTTG+AGG 0.527396 6_4:-2596268 None:intergenic
TTTCCGACTGAGTGTGTCAC+AGG 0.527740 6_4:-2601357 None:intergenic
GAAGCAGAATGCAGCCAAAA+CGG 0.532187 6_4:-2600217 None:intergenic
AATGTATGAGCCACGGCAAG+TGG 0.534798 6_4:-2598352 None:intergenic
GTTACTTCATGATCAAATGT+TGG 0.534841 6_4:+2601909 Msa0970940:three_prime_UTR
GTTTGGAAGAAAGAAGAAGA+TGG 0.535689 6_4:-2596422 None:intergenic
CATTCCGTGATTGATTCGTA+AGG 0.539431 6_4:-2599606 None:intergenic
GAAGAAACCACCCATAAAGT+AGG 0.541772 6_4:-2599171 None:intergenic
GAAAGAACAACAGTGAAGAA+AGG 0.544323 6_4:-2598448 None:intergenic
CCATCAATGGTGAGTCTAAG+TGG 0.550995 6_4:-2596389 None:intergenic
AAGAGAGAGAGATAGAGAGA+GGG 0.555665 6_4:+2601777 Msa0970940:three_prime_UTR
CTGCTTCCATGCATACCAGC+AGG 0.555668 6_4:+2600233 Msa0970940:CDS
GACGAACATTAGTCTTGGCA+AGG 0.558148 6_4:+2598387 Msa0970940:CDS
GATTGGATTCAGCACTGCAA+TGG 0.559860 6_4:+2599576 Msa0970940:CDS
TATGAGCCACGGCAAGTGGA+AGG 0.564903 6_4:-2598348 None:intergenic
TGGGCATGAAAATCCATCAA+TGG 0.566301 6_4:-2596402 None:intergenic
GGCAATCCTTCCACTTGCCG+TGG 0.571563 6_4:+2598342 Msa0970940:CDS
TTTGGAAGAAAGAAGAAGAT+GGG 0.579779 6_4:-2596421 None:intergenic
TCTTGTATTCAAGGGCAAAG+AGG 0.597986 6_4:+2601696 Msa0970940:CDS
CTTCCTATATAGGCAAGCCA+AGG 0.608037 6_4:+2600165 Msa0970940:intron
TCTCTTCTACCTATAGTTGG+GGG 0.608716 6_4:+2599192 Msa0970940:CDS
ACAGATGCCTACTTTATGGG+TGG 0.618256 6_4:+2599164 Msa0970940:intron
TAAGCCAGTGCCAAAGACAA+AGG 0.620413 6_4:+2601721 Msa0970940:CDS
GTTTCCCAATGTATGAGCCA+CGG 0.635689 6_4:-2598359 None:intergenic
AAAACTAATGGCTAACGAAG+AGG 0.644953 6_4:+2599639 Msa0970940:CDS
ACCGCAGATTGCAGGTACGA+AGG 0.647636 6_4:-2599842 None:intergenic
TCACCTGTGACACACTCAGT+CGG 0.658587 6_4:+2601354 Msa0970940:CDS
TCCTTCGTACCTGCAATCTG+CGG 0.661719 6_4:+2599841 Msa0970940:CDS
CCAACCTTACGAATCAATCA+CGG 0.673670 6_4:+2599602 Msa0970940:CDS
CTGAGGCACAGAGTGATGAA+GGG 0.684073 6_4:+2596522 Msa0970940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAATTTCAATACATTT+AGG + chr6_4:2598834-2598853 Msa0970940:intron 10.0%
!! TTATAATTTCAATACATTTA+GGG + chr6_4:2598835-2598854 Msa0970940:intron 10.0%
!! TCAAATGAATAACTTTATAA+GGG - chr6_4:2597006-2597025 None:intergenic 15.0%
!! ATCAAATGAATAACTTTATA+AGG - chr6_4:2597007-2597026 None:intergenic 15.0%
!! TATAAAGTTATTCATTTGAT+TGG + chr6_4:2597007-2597026 Msa0970940:intron 15.0%
!!! TTCATTTTTTTGCATTTATT+TGG + chr6_4:2597091-2597110 Msa0970940:intron 15.0%
!!! TTTTGATTTTAGATGAAAAT+TGG + chr6_4:2598219-2598238 Msa0970940:intron 15.0%
!!! TATCCTTATTTAAATAATTG+AGG + chr6_4:2600109-2600128 Msa0970940:intron 15.0%
!!! TAAAAAGCATTTACTATAAT+CGG - chr6_4:2600540-2600559 None:intergenic 15.0%
!!! TTTAAAATGAAACATTTTTC+TGG + chr6_4:2600649-2600668 Msa0970940:intron 15.0%
!!! TCAATTTTTTTTTTACACAT+GGG + chr6_4:2600672-2600691 Msa0970940:intron 15.0%
!!! AAATAGTATATTTGGTTTAT+AGG + chr6_4:2600924-2600943 Msa0970940:intron 15.0%
!! GAAAATTAAAAGAAGAAATA+TGG - chr6_4:2601559-2601578 None:intergenic 15.0%
!! AAAATAAAAAAATTGATGAG+TGG - chr6_4:2601831-2601850 None:intergenic 15.0%
!!! AAAGAAATGTCTTTTTAATT+TGG + chr6_4:2601984-2602003 Msa0970940:three_prime_UTR 15.0%
!!! AACAAACAGGTATTTTTTTA+AGG + chr6_4:2596635-2596654 Msa0970940:intron 20.0%
!!! ACAAACAGGTATTTTTTTAA+GGG + chr6_4:2596636-2596655 Msa0970940:intron 20.0%
!! TACTTATTAAGTCATTCATT+TGG + chr6_4:2596760-2596779 Msa0970940:intron 20.0%
!!! GATTTTTTAACTCTTTCTTA+AGG + chr6_4:2596782-2596801 Msa0970940:intron 20.0%
!! TACTTATTAAGTCATTCATT+TGG + chr6_4:2596760-2596779 Msa0970940:intron 20.0%
!!! TTTTTTTGCATTTATTTGGA+TGG + chr6_4:2597095-2597114 Msa0970940:intron 20.0%
!! AAAAAATTGGTCATAGTTAT+CGG + chr6_4:2597357-2597376 Msa0970940:intron 20.0%
!!! AGAGTATCATAATTCAATAT+GGG - chr6_4:2597678-2597697 None:intergenic 20.0%
!!! TAGAGTATCATAATTCAATA+TGG - chr6_4:2597679-2597698 None:intergenic 20.0%
!!! AATAAAAAAGTGATTAGCTA+CGG - chr6_4:2597745-2597764 None:intergenic 20.0%
!! AAAAATGTCATACTTTCTAT+CGG + chr6_4:2597878-2597897 Msa0970940:intron 20.0%
!! ACTAACAAAATAGATATTTG+AGG - chr6_4:2598632-2598651 None:intergenic 20.0%
!!! ATCTATTTTGTTAGTTAGTT+TGG + chr6_4:2598637-2598656 Msa0970940:intron 20.0%
!!! TGATGTTTTTTGTAATTTGT+TGG + chr6_4:2598723-2598742 Msa0970940:intron 20.0%
!! TAAAAAGTCGTGATATTATA+AGG - chr6_4:2599928-2599947 None:intergenic 20.0%
!! AATTGAATAAAATTCATGCA+AGG + chr6_4:2600007-2600026 Msa0970940:intron 20.0%
!! CTTCCTCAATTATTTAAATA+AGG - chr6_4:2600115-2600134 None:intergenic 20.0%
!! CATATTAATTATAATCTGCA+TGG + chr6_4:2600325-2600344 Msa0970940:intron 20.0%
!!! TTTTTTTTTATATCCGGATA+TGG + chr6_4:2600414-2600433 Msa0970940:intron 20.0%
!!! GTCAATTTTTTTTTTACACA+TGG + chr6_4:2600671-2600690 Msa0970940:intron 20.0%
!!! GAATAAATATTGTTGACTTA+TGG + chr6_4:2600780-2600799 Msa0970940:intron 20.0%
!!! AACAGAAGATATTTTTTGTT+TGG + chr6_4:2600882-2600901 Msa0970940:intron 20.0%
!! AAGTAAGTTACTATTACTAA+AGG - chr6_4:2601252-2601271 None:intergenic 20.0%
!!! TTTTGAAAAGGGTGAAATTT+TGG - chr6_4:2596341-2596360 None:intergenic 25.0%
!!! GAGAATGAGTATTTTGAAAA+GGG - chr6_4:2596352-2596371 None:intergenic 25.0%
!!! TGAGAATGAGTATTTTGAAA+AGG - chr6_4:2596353-2596372 None:intergenic 25.0%
!! TTTGGATTTGAAATGAAGAA+AGG - chr6_4:2596464-2596483 None:intergenic 25.0%
! CTTCATTTCAAATCCAAAAA+TGG + chr6_4:2596466-2596485 Msa0970940:CDS 25.0%
!!! ACTCTAAAAGAATCCATTTT+TGG - chr6_4:2596482-2596501 None:intergenic 25.0%
! TTTCAACATTTACAACAAAC+AGG + chr6_4:2596622-2596641 Msa0970940:CDS 25.0%
!!! CAAACAGGTATTTTTTTAAG+GGG + chr6_4:2596637-2596656 Msa0970940:intron 25.0%
! AAACATTATTAGTCATATGG+CGG - chr6_4:2596870-2596889 None:intergenic 25.0%
! GTCAAACATTATTAGTCATA+TGG - chr6_4:2596873-2596892 None:intergenic 25.0%
!!! GTTTTTTTAACCCTTTCTTT+AGG + chr6_4:2596927-2596946 Msa0970940:intron 25.0%
! ACAAATTAAGCCTAAAGAAA+GGG - chr6_4:2596940-2596959 None:intergenic 25.0%
! TACAAATTAAGCCTAAAGAA+AGG - chr6_4:2596941-2596960 None:intergenic 25.0%
!! TCTCTGATGTATGTATATTT+TGG + chr6_4:2597444-2597463 Msa0970940:intron 25.0%
! TATGATACACTATGATGATA+AGG + chr6_4:2597487-2597506 Msa0970940:intron 25.0%
! ATAAGGTTTGATTCATTCTA+AGG + chr6_4:2597504-2597523 Msa0970940:intron 25.0%
! ACTACATTAACTACTCTAAT+TGG - chr6_4:2597555-2597574 None:intergenic 25.0%
!! GTTAGAGAGTTAGTATATTT+TGG + chr6_4:2597644-2597663 Msa0970940:intron 25.0%
! GATTCAAGTCATAAATCAAA+CGG - chr6_4:2597790-2597809 None:intergenic 25.0%
!!! TTGAATCGTGAATTATTTTG+AGG + chr6_4:2597803-2597822 Msa0970940:intron 25.0%
!! GTTAGATTTTACTCATGATT+CGG + chr6_4:2597922-2597941 Msa0970940:intron 25.0%
!!! TGCATTGGTTGTTTATTATT+AGG + chr6_4:2598070-2598089 Msa0970940:intron 25.0%
! AATGTGTCCTTTAATTAGTT+TGG + chr6_4:2598605-2598624 Msa0970940:intron 25.0%
!! GTCTTTTGTTAGTAAATTGA+CGG - chr6_4:2598696-2598715 None:intergenic 25.0%
!!! TAGCTGACTAATTGTTATTT+TGG - chr6_4:2598893-2598912 None:intergenic 25.0%
! ACCAAATTCAAATGATTACA+TGG + chr6_4:2598967-2598986 Msa0970940:intron 25.0%
! CCAAATTCAAATGATTACAT+GGG + chr6_4:2598968-2598987 Msa0970940:intron 25.0%
! AAATGTCCTTGTTACATATA+TGG + chr6_4:2599015-2599034 Msa0970940:intron 25.0%
!!! TGATGGATATCTAATTGTTT+TGG + chr6_4:2599109-2599128 Msa0970940:intron 25.0%
! ATATCTAATAAGACCTTGTT+TGG + chr6_4:2599293-2599312 Msa0970940:intron 25.0%
! TTAAACAATATAGCCAAACA+AGG - chr6_4:2599309-2599328 None:intergenic 25.0%
!!! TGTTTTCAGCTTATTTCTAT+AGG - chr6_4:2599444-2599463 None:intergenic 25.0%
!!! TGTTTTGAGCAAAAAACTAA+TGG + chr6_4:2599627-2599646 Msa0970940:CDS 25.0%
! TATTGAGTAAAGTTTACGTA+GGG - chr6_4:2599959-2599978 None:intergenic 25.0%
! GACAACATATATTTAACCAT+TGG + chr6_4:2600059-2600078 Msa0970940:intron 25.0%
! ATAGCATATAAAGTTACCAA+TGG - chr6_4:2600078-2600097 None:intergenic 25.0%
!! AATTCCCAATCAATTTTATC+CGG + chr6_4:2600389-2600408 Msa0970940:intron 25.0%
!!! AAATGCTTTTTATATCGATG+TGG + chr6_4:2600548-2600567 Msa0970940:intron 25.0%
!!! AACTGATTTTAAGTTTGTGT+AGG + chr6_4:2600829-2600848 Msa0970940:intron 25.0%
!! CTTCTGTTTTACATGAAATA+TGG - chr6_4:2600870-2600889 None:intergenic 25.0%
! ATTTCTGAGTTTGTCATTAA+AGG + chr6_4:2601029-2601048 Msa0970940:intron 25.0%
!! ACTATTTTCAGATTAGTGTT+AGG + chr6_4:2601081-2601100 Msa0970940:intron 25.0%
! CTAATGATCTGTTTATGTTA+AGG - chr6_4:2601142-2601161 None:intergenic 25.0%
! ATCATTAGAGTATGTAACAT+TGG + chr6_4:2601154-2601173 Msa0970940:intron 25.0%
!! AGTATGTAACATTGGTATTT+TGG + chr6_4:2601162-2601181 Msa0970940:intron 25.0%
! CAAACATTAGCAACTAAATA+TGG - chr6_4:2601221-2601240 None:intergenic 25.0%
!! TTCAAGTACTTGCAAATTTT+TGG + chr6_4:2601484-2601503 Msa0970940:intron 25.0%
! ACAAAAATTGCTACAACTTA+TGG + chr6_4:2601520-2601539 Msa0970940:intron 25.0%
! CAAAAATTGCTACAACTTAT+GGG + chr6_4:2601521-2601540 Msa0970940:intron 25.0%
! GAAGAAATATGGATAGTAAA+TGG - chr6_4:2601548-2601567 None:intergenic 25.0%
! CACAAAAAAGGAAATGAAAA+TGG - chr6_4:2601631-2601650 None:intergenic 25.0%
!!! CATTTTCATTTCCTTTTTTG+TGG + chr6_4:2601629-2601648 Msa0970940:intron 25.0%
! TTAACTCTTTCAAAAGAGTA+AGG + chr6_4:2601752-2601771 Msa0970940:three_prime_UTR 25.0%
!!! TTTATTTTTTTTGTTGGGTG+AGG + chr6_4:2601849-2601868 Msa0970940:three_prime_UTR 25.0%
!!! TTATTTTTTTTGTTGGGTGA+GGG + chr6_4:2601850-2601869 Msa0970940:three_prime_UTR 25.0%
! ATCATGAAGTAACCTTAAAA+AGG - chr6_4:2601902-2601921 None:intergenic 25.0%
GAAGTGAAAAACACTGAAAA+AGG - chr6_4:2596207-2596226 None:intergenic 30.0%
AGGTTTGATGAGAGAAAATA+AGG - chr6_4:2596251-2596270 None:intergenic 30.0%
!!! GAAATTTTGGTTTGGTTATG+TGG - chr6_4:2596328-2596347 None:intergenic 30.0%
!!! AAAAGGGTGAAATTTTGGTT+TGG - chr6_4:2596336-2596355 None:intergenic 30.0%
TTTGGAAGAAAGAAGAAGAT+GGG - chr6_4:2596424-2596443 None:intergenic 30.0%
! GTGAAGATTTTCTAACAGTT+TGG - chr6_4:2596442-2596461 None:intergenic 30.0%
AAACATTATCAGTCATATGG+CGG - chr6_4:2596725-2596744 None:intergenic 30.0%
GTCAAACATTATCAGTCATA+TGG - chr6_4:2596728-2596747 None:intergenic 30.0%
!! GCTTAATTTGTATACACTGT+CGG + chr6_4:2596949-2596968 Msa0970940:intron 30.0%
! CATTCTCTTTTAACACAAGA+AGG + chr6_4:2597218-2597237 Msa0970940:intron 30.0%
AAATGTAATTAGAGTCGTGT+TGG - chr6_4:2597273-2597292 None:intergenic 30.0%
AAGGCAATAATTTGGAAAGA+TGG - chr6_4:2597303-2597322 None:intergenic 30.0%
! TTCATTCTAAGGAATCACTA+AGG + chr6_4:2597515-2597534 Msa0970940:intron 30.0%
TCACTAAGGATATGGAATAA+TGG + chr6_4:2597529-2597548 Msa0970940:intron 30.0%
! TGATTAGCTACGGTAAATTT+AGG - chr6_4:2597735-2597754 None:intergenic 30.0%
!!! AATCACTTTTTTATTGTCGC+TGG + chr6_4:2597750-2597769 Msa0970940:intron 30.0%
! TTACTCATGATTCGGAAAAT+AGG + chr6_4:2597930-2597949 Msa0970940:intron 30.0%
! CTTTCTTTTTGATCCTCTTT+TGG + chr6_4:2598031-2598050 Msa0970940:intron 30.0%
!!! GATCTACTAATTTTTGGTCT+AGG - chr6_4:2598191-2598210 None:intergenic 30.0%
ACCAAAAATTAGTAGATCAC+AGG + chr6_4:2598193-2598212 Msa0970940:CDS 30.0%
! ACCTGTGATCTACTAATTTT+TGG - chr6_4:2598197-2598216 None:intergenic 30.0%
ACAAGACATTCACCAAATAT+TGG - chr6_4:2598250-2598269 None:intergenic 30.0%
! TGTTCTTTCATCTCTTCTTT+TGG + chr6_4:2598462-2598481 Msa0970940:CDS 30.0%
! GTTCTTTCATCTCTTCTTTT+GGG + chr6_4:2598463-2598482 Msa0970940:CDS 30.0%
!! CCAAAATCGATGTTTTTCAA+CGG - chr6_4:2598519-2598538 None:intergenic 30.0%
CTAATTAAAGGACACATTCA+TGG - chr6_4:2598603-2598622 None:intergenic 30.0%
TTGAGGACCAAACTAATTAA+AGG - chr6_4:2598615-2598634 None:intergenic 30.0%
CCCATGTAATCATTTGAATT+TGG - chr6_4:2598971-2598990 None:intergenic 30.0%
! GTAACAAGGACATTTTCTTA+GGG - chr6_4:2599010-2599029 None:intergenic 30.0%
! TGTAACAAGGACATTTTCTT+AGG - chr6_4:2599011-2599030 None:intergenic 30.0%
CTGTATAGTAGAAAATGACT+TGG + chr6_4:2599058-2599077 Msa0970940:intron 30.0%
CTAAAGCAAGAATAACTTCA+TGG + chr6_4:2599267-2599286 Msa0970940:intron 30.0%
ACATTAGTACTTGTATGCAT+AGG - chr6_4:2599339-2599358 None:intergenic 30.0%
AATAAGCTGAAAACAGTTGA+TGG + chr6_4:2599449-2599468 Msa0970940:intron 30.0%
TAGCAGAACTACATACTATT+TGG - chr6_4:2599505-2599524 None:intergenic 30.0%
CAACAGGAAAAATGAAATGA+TGG - chr6_4:2599783-2599802 None:intergenic 30.0%
!! CATCATTTCATTTTTCCTGT+TGG + chr6_4:2599781-2599800 Msa0970940:CDS 30.0%
! GGTACCATATGCTATATTTT+CGG + chr6_4:2599802-2599821 Msa0970940:CDS 30.0%
CTATTGAGTAAAGTTTACGT+AGG - chr6_4:2599960-2599979 None:intergenic 30.0%
AATTGAGGAAGAGAAAAATG+TGG + chr6_4:2600124-2600143 Msa0970940:intron 30.0%
! TAGCATGTTACTTCCTATAT+AGG + chr6_4:2600155-2600174 Msa0970940:intron 30.0%
! ATTCCCAATCAATTTTATCC+GGG + chr6_4:2600390-2600409 Msa0970940:intron 30.0%
AAACCCGGATAAAATTGATT+GGG - chr6_4:2600396-2600415 None:intergenic 30.0%
AAAACCCGGATAAAATTGAT+TGG - chr6_4:2600397-2600416 None:intergenic 30.0%
CCGGATATAAAAAAAAAACC+CGG - chr6_4:2600411-2600430 None:intergenic 30.0%
!!! CCGGGTTTTTTTTTTATATC+CGG + chr6_4:2600408-2600427 Msa0970940:intron 30.0%
TTTATATCCGGATATGGATT+TGG + chr6_4:2600420-2600439 Msa0970940:intron 30.0%
! TTGTTGATAAATCACGTATC+CGG + chr6_4:2600443-2600462 Msa0970940:intron 30.0%
TGAAATCAAATCCAGTTATG+TGG + chr6_4:2600500-2600519 Msa0970940:intron 30.0%
TTAAAACCAATCCACATAAC+TGG - chr6_4:2600514-2600533 None:intergenic 30.0%
AAGAAACTTCTTGTATGAGA+TGG - chr6_4:2600710-2600729 None:intergenic 30.0%
TCGAATGATGTACTTTATTC+AGG + chr6_4:2600729-2600748 Msa0970940:intron 30.0%
CTCCATGATAAAAGGAAAAT+TGG - chr6_4:2601055-2601074 None:intergenic 30.0%
! CAATTTTCCTTTTATCATGG+AGG + chr6_4:2601053-2601072 Msa0970940:intron 30.0%
GTGACATCAATAATTGATGT+TGG + chr6_4:2601282-2601301 Msa0970940:intron 30.0%
TGCAAGTACTTGAAAATATG+TGG - chr6_4:2601478-2601497 None:intergenic 30.0%
! TTGGAGTTTTCTTGTATTCA+AGG + chr6_4:2601687-2601706 Msa0970940:CDS 30.0%
! TGGAGTTTTCTTGTATTCAA+GGG + chr6_4:2601688-2601707 Msa0970940:CDS 30.0%
AATTATGCTTCCTTTGTCTT+TGG - chr6_4:2601734-2601753 None:intergenic 30.0%
!!! TATTTTTTTTGTTGGGTGAG+GGG + chr6_4:2601851-2601870 Msa0970940:three_prime_UTR 30.0%
! CTAGAAGTTTGTCCTTTTTA+AGG + chr6_4:2601887-2601906 Msa0970940:three_prime_UTR 30.0%
GTTACTTCATGATCAAATGT+TGG + chr6_4:2601909-2601928 Msa0970940:three_prime_UTR 30.0%
CATAGAGATTATGCATGTTG+AGG - chr6_4:2596271-2596290 None:intergenic 35.0%
! TATGTGGTTTGAAAGGTGTA+AGG - chr6_4:2596312-2596331 None:intergenic 35.0%
GTTTGGTTATGTGGTTTGAA+AGG - chr6_4:2596319-2596338 None:intergenic 35.0%
GTTTGGAAGAAAGAAGAAGA+TGG - chr6_4:2596425-2596444 None:intergenic 35.0%
AAGGGAAACAACAAACTTCT+GGG + chr6_4:2596540-2596559 Msa0970940:CDS 35.0%
! TTGGTTTCATGTTTGCTACT+TGG + chr6_4:2596582-2596601 Msa0970940:CDS 35.0%
GTTTACTTCGTATACACTGA+CGG + chr6_4:2596804-2596823 Msa0970940:intron 35.0%
!! GATTGGTTGTGATTTGTTGA+AGG + chr6_4:2597024-2597043 Msa0970940:intron 35.0%
CATCTTACCATACATGTTAG+CGG + chr6_4:2597380-2597399 Msa0970940:intron 35.0%
! GTTCAGTTTGGTATCGAATT+TGG - chr6_4:2597421-2597440 None:intergenic 35.0%
! CATCAGAGATTTGTTCAGTT+TGG - chr6_4:2597433-2597452 None:intergenic 35.0%
CTAAGGAATCACTAAGGATA+TGG + chr6_4:2597521-2597540 Msa0970940:intron 35.0%
ACGCATAGAAACATAGAACA+TGG - chr6_4:2597991-2598010 None:intergenic 35.0%
CAATTGAGAACAACCAAAAG+AGG - chr6_4:2598047-2598066 None:intergenic 35.0%
TGTTCTCAATTGCAATGCAT+TGG + chr6_4:2598055-2598074 Msa0970940:intron 35.0%
ACAGTTACAACATTCCAGTT+CGG + chr6_4:2598119-2598138 Msa0970940:CDS 35.0%
!! AAATTGGCTCGTCCAATATT+TGG + chr6_4:2598235-2598254 Msa0970940:intron 35.0%
TGTTTGTGTTTCACAGCTTA+CGG + chr6_4:2598321-2598340 Msa0970940:intron 35.0%
CAAGACTAATGTTCGTCAAA+AGG - chr6_4:2598384-2598403 None:intergenic 35.0%
!! CTTTTGACGAACATTAGTCT+TGG + chr6_4:2598382-2598401 Msa0970940:CDS 35.0%
GAAAGGTTCCATAGATTTGA+TGG - chr6_4:2598434-2598453 None:intergenic 35.0%
GAAAGAACAACAGTGAAGAA+AGG - chr6_4:2598451-2598470 None:intergenic 35.0%
!!! CCGTTGAAAAACATCGATTT+TGG + chr6_4:2598516-2598535 Msa0970940:intron 35.0%
!! TAATTTGTTGGTTTCCCTAG+TGG + chr6_4:2598735-2598754 Msa0970940:intron 35.0%
TCAAACCAATCAATCCACTA+GGG - chr6_4:2598752-2598771 None:intergenic 35.0%
ATCAAACCAATCAATCCACT+AGG - chr6_4:2598753-2598772 None:intergenic 35.0%
!!! GGTTTTAAACCAAGAAGGAA+AGG - chr6_4:2598790-2598809 None:intergenic 35.0%
!!! TTTTGGTTCCTAAATGTACG+AGG - chr6_4:2598876-2598895 None:intergenic 35.0%
! CACGCAGTTTAGTAATTTGT+AGG + chr6_4:2598917-2598936 Msa0970940:intron 35.0%
TAGGACTGAAAATCGAGTAA+AGG + chr6_4:2598936-2598955 Msa0970940:intron 35.0%
ATGACGCCATATATGTAACA+AGG - chr6_4:2599024-2599043 None:intergenic 35.0%
AAGTAGGCATCTGTTCATTT+AGG - chr6_4:2599158-2599177 None:intergenic 35.0%
ATGAACAGATGCCTACTTTA+TGG + chr6_4:2599160-2599179 Msa0970940:intron 35.0%
TGAACAGATGCCTACTTTAT+GGG + chr6_4:2599161-2599180 Msa0970940:intron 35.0%
TCTTCTCTTCTACCTATAGT+TGG + chr6_4:2599189-2599208 Msa0970940:CDS 35.0%
CTTCTCTTCTACCTATAGTT+GGG + chr6_4:2599190-2599209 Msa0970940:CDS 35.0%
TTCTCTTCTACCTATAGTTG+GGG + chr6_4:2599191-2599210 Msa0970940:CDS 35.0%
TGACTGAAGTCTCTTTCAAT+TGG + chr6_4:2599232-2599251 Msa0970940:CDS 35.0%
! TATGTAGTTCTGCTACTCTT+AGG + chr6_4:2599510-2599529 Msa0970940:intron 35.0%
! CTCTTAGGTAAGATTGATTC+TGG + chr6_4:2599525-2599544 Msa0970940:intron 35.0%
AAAACTAATGGCTAACGAAG+AGG + chr6_4:2599639-2599658 Msa0970940:CDS 35.0%
ATATAGCATATGGTACCAAC+AGG - chr6_4:2599799-2599818 None:intergenic 35.0%
! ACCATATGCTATATTTTCGG+AGG + chr6_4:2599805-2599824 Msa0970940:CDS 35.0%
! CCATATGCTATATTTTCGGA+GGG + chr6_4:2599806-2599825 Msa0970940:CDS 35.0%
ATGCAAGGACTAAGCATAAA+AGG + chr6_4:2600022-2600041 Msa0970940:intron 35.0%
! GCTATGTATAAGATCCGTTT+TGG + chr6_4:2600203-2600222 Msa0970940:CDS 35.0%
! GAATGAGCAACTAAGCTTTT+AGG - chr6_4:2600366-2600385 None:intergenic 35.0%
TCAACAACCAAATCCATATC+CGG - chr6_4:2600430-2600449 None:intergenic 35.0%
!! CCATAGTTGCTCATTTTAAC+CGG - chr6_4:2600465-2600484 None:intergenic 35.0%
! TGGATTTGATTTCACAACAC+CGG - chr6_4:2600494-2600513 None:intergenic 35.0%
TCAAATCCAGTTATGTGGAT+TGG + chr6_4:2600505-2600524 Msa0970940:intron 35.0%
! CACATGTGCAATGAAGATTT+TGG + chr6_4:2600612-2600631 Msa0970940:intron 35.0%
!! GATTGTGCGTTGATTAAACA+CGG + chr6_4:2601002-2601021 Msa0970940:intron 35.0%
!! ATTGTGCGTTGATTAAACAC+GGG + chr6_4:2601003-2601022 Msa0970940:intron 35.0%
! GGCCAATTTTCCTTTTATCA+TGG + chr6_4:2601050-2601069 Msa0970940:intron 35.0%
! TTTCCTTTTATCATGGAGGT+CGG + chr6_4:2601057-2601076 Msa0970940:intron 35.0%
ATGTTGGAGCTTAATGCATT+TGG + chr6_4:2601298-2601317 Msa0970940:intron 35.0%
CCAAATTAGGACCACAAAAA+AGG - chr6_4:2601643-2601662 None:intergenic 35.0%
!!! CCTTTTTTGTGGTCCTAATT+TGG + chr6_4:2601640-2601659 Msa0970940:intron 35.0%
AGGTGTAAGGTTGAAGAAGA+AGG - chr6_4:2596299-2596318 None:intergenic 40.0%
TGGGCATGAAAATCCATCAA+TGG - chr6_4:2596405-2596424 None:intergenic 40.0%
GAAGGGAAACAACAAACTTC+TGG + chr6_4:2596539-2596558 Msa0970940:CDS 40.0%
CATATGGCGGTTATGGTTAT+TGG - chr6_4:2596712-2596731 None:intergenic 40.0%
TATCAGTCATATGGCGGTTA+TGG - chr6_4:2596719-2596738 None:intergenic 40.0%
GGAATAGGGTCAAAGTCAAA+TGG + chr6_4:2597148-2597167 Msa0970940:intron 40.0%
ACGTCGACAAGGCAATAATT+TGG - chr6_4:2597311-2597330 None:intergenic 40.0%
!!! CCAATTTTTTTGCATGCCAC+CGG - chr6_4:2597347-2597366 None:intergenic 40.0%
GTTGTAACTGTTGCTGGAAA+TGG - chr6_4:2598110-2598129 None:intergenic 40.0%
TGGAATGTTGTAACTGTTGC+TGG - chr6_4:2598116-2598135 None:intergenic 40.0%
!! CGTTGGTGATCAATTTGATC+TGG + chr6_4:2598150-2598169 Msa0970940:CDS 40.0%
CACTCACACCATCAAATCTA+TGG + chr6_4:2598423-2598442 Msa0970940:CDS 40.0%
!! TTCATCTCTTCTTTTGGGTG+AGG + chr6_4:2598468-2598487 Msa0970940:CDS 40.0%
! TTGTTAGTTAGTTTGGTCCC+TGG + chr6_4:2598644-2598663 Msa0970940:intron 40.0%
CAATCTACACCTTTCCTTCT+TGG + chr6_4:2598778-2598797 Msa0970940:intron 40.0%
!!! CTGCTGGTTTTAAACCAAGA+AGG - chr6_4:2598795-2598814 None:intergenic 40.0%
GCTCATAAATGAGCAAGTGA+TGG + chr6_4:2599092-2599111 Msa0970940:intron 40.0%
GAAGAAACCACCCATAAAGT+AGG - chr6_4:2599174-2599193 None:intergenic 40.0%
TCTCTTCTACCTATAGTTGG+GGG + chr6_4:2599192-2599211 Msa0970940:CDS 40.0%
CCAACCTTACGAATCAATCA+CGG + chr6_4:2599602-2599621 Msa0970940:CDS 40.0%
!! CATTCCGTGATTGATTCGTA+AGG - chr6_4:2599609-2599628 None:intergenic 40.0%
! ACTTGAAGCATGTTTCTGAC+AGG + chr6_4:2599721-2599740 Msa0970940:intron 40.0%
! ATGTTTCTGACAGGAAGCTT+TGG + chr6_4:2599730-2599749 Msa0970940:intron 40.0%
CCCTCCGAAAATATAGCATA+TGG - chr6_4:2599809-2599828 None:intergenic 40.0%
AATTACATACCGCAGATTGC+AGG - chr6_4:2599853-2599872 None:intergenic 40.0%
!!! AGTCCTTGTTTTGCTTTCGT+GGG - chr6_4:2599985-2600004 None:intergenic 40.0%
!!! TAGTCCTTGTTTTGCTTTCG+TGG - chr6_4:2599986-2600005 None:intergenic 40.0%
!! AATCCTTGGCTTGCCTATAT+AGG - chr6_4:2600171-2600190 None:intergenic 40.0%
CCGGTTAAAATGAGCAACTA+TGG + chr6_4:2600462-2600481 Msa0970940:intron 40.0%
TGAGCAACTATGGACATAAC+CGG + chr6_4:2600472-2600491 Msa0970940:intron 40.0%
AAGTAGGGTTGCTTATGGAT+AGG - chr6_4:2600590-2600609 None:intergenic 40.0%
CATTGCACATGTGACAAGTA+GGG - chr6_4:2600605-2600624 None:intergenic 40.0%
TCATTGCACATGTGACAAGT+AGG - chr6_4:2600606-2600625 None:intergenic 40.0%
TTGGAGCTTAATGCATTTGG+TGG + chr6_4:2601301-2601320 Msa0970940:intron 40.0%
! ATTTGGTGGCAGGTTTCATA+TGG + chr6_4:2601315-2601334 Msa0970940:intron 40.0%
! TTTGGTGGCAGGTTTCATAT+GGG + chr6_4:2601316-2601335 Msa0970940:intron 40.0%
CCATTAGAGAGACTTACCAA+GGG - chr6_4:2601454-2601473 None:intergenic 40.0%
ACCATTAGAGAGACTTACCA+AGG - chr6_4:2601455-2601474 None:intergenic 40.0%
TCTTGTATTCAAGGGCAAAG+AGG + chr6_4:2601696-2601715 Msa0970940:CDS 40.0%
AAAGAGAGAGAGATAGAGAG+AGG + chr6_4:2601776-2601795 Msa0970940:three_prime_UTR 40.0%
AAGAGAGAGAGATAGAGAGA+GGG + chr6_4:2601777-2601796 Msa0970940:three_prime_UTR 40.0%
CCATCAATGGTGAGTCTAAG+TGG - chr6_4:2596392-2596411 None:intergenic 45.0%
CCACTTAGACTCACCATTGA+TGG + chr6_4:2596389-2596408 Msa0970940:CDS 45.0%
CTTGTTCAGTCTCTTCAGCT+TGG + chr6_4:2596563-2596582 Msa0970940:CDS 45.0%
GGTTAGCGTGAGTTAGATTC+TGG + chr6_4:2597116-2597135 Msa0970940:intron 45.0%
!! CGTGAGTTAGATTCTGGAGT+GGG + chr6_4:2597122-2597141 Msa0970940:intron 45.0%
!! AGTTAGATTCTGGAGTGGGA+AGG + chr6_4:2597126-2597145 Msa0970940:intron 45.0%
!! GTTAGATTCTGGAGTGGGAA+GGG + chr6_4:2597127-2597146 Msa0970940:intron 45.0%
CCGGTGGCATGCAAAAAAAT+TGG + chr6_4:2597344-2597363 Msa0970940:intron 45.0%
CTAGACACCGCTAACATGTA+TGG - chr6_4:2597390-2597409 None:intergenic 45.0%
GTTTCCCAATGTATGAGCCA+CGG - chr6_4:2598362-2598381 None:intergenic 45.0%
!! GACGAACATTAGTCTTGGCA+AGG + chr6_4:2598387-2598406 Msa0970940:CDS 45.0%
ATGAACGGAAGACACATCCA+GGG - chr6_4:2598664-2598683 None:intergenic 45.0%
GTGTCTTCCGTTCATCAGTT+TGG + chr6_4:2598669-2598688 Msa0970940:intron 45.0%
! TGACGGACCAAACTGATGAA+CGG - chr6_4:2598679-2598698 None:intergenic 45.0%
!! GGTTTCCCTAGTGGATTGAT+TGG + chr6_4:2598744-2598763 Msa0970940:intron 45.0%
AAACCAGCAGAGACAAACAG+AGG + chr6_4:2598805-2598824 Msa0970940:intron 45.0%
AACCAGCAGAGACAAACAGA+GGG + chr6_4:2598806-2598825 Msa0970940:intron 45.0%
TGGTTCCTAAATGTACGAGG+CGG - chr6_4:2598873-2598892 None:intergenic 45.0%
TGGCGTCATTCGATACATGT+AGG + chr6_4:2599035-2599054 Msa0970940:intron 45.0%
ACAGATGCCTACTTTATGGG+TGG + chr6_4:2599164-2599183 Msa0970940:intron 45.0%
ACATGTTCTCGTCTCCAAAC+AGG + chr6_4:2599554-2599573 Msa0970940:intron 45.0%
TTCTCGTCTCCAAACAGGAT+TGG + chr6_4:2599559-2599578 Msa0970940:intron 45.0%
GTGCTGAATCCAATCCTGTT+TGG - chr6_4:2599571-2599590 None:intergenic 45.0%
GATTGGATTCAGCACTGCAA+TGG + chr6_4:2599576-2599595 Msa0970940:CDS 45.0%
!! CCGTGATTGATTCGTAAGGT+TGG - chr6_4:2599605-2599624 None:intergenic 45.0%
!!! GTCCTTGTTTTGCTTTCGTG+GGG - chr6_4:2599984-2600003 None:intergenic 45.0%
CTTCCTATATAGGCAAGCCA+AGG + chr6_4:2600165-2600184 Msa0970940:intron 45.0%
GCTCTCGAACATTCAATCCT+TGG - chr6_4:2600185-2600204 None:intergenic 45.0%
GAAGCAGAATGCAGCCAAAA+CGG - chr6_4:2600220-2600239 None:intergenic 45.0%
ATGTGAAAAACCTCACCTGC+TGG - chr6_4:2600251-2600270 None:intergenic 45.0%
GTGACAAGTAGGGTTGCTTA+TGG - chr6_4:2600595-2600614 None:intergenic 45.0%
! AGCTTAATGCATTTGGTGGC+AGG + chr6_4:2601305-2601324 Msa0970940:intron 45.0%
CCCTTGGTAAGTCTCTCTAA+TGG + chr6_4:2601451-2601470 Msa0970940:intron 45.0%
TGTGGTCCTAATTTGGTTGC+AGG + chr6_4:2601647-2601666 Msa0970940:intron 45.0%
GCAGTTCCTGCAACCAAATT+AGG - chr6_4:2601656-2601675 None:intergenic 45.0%
GGAACTGCTATTGCACTTGT+TGG + chr6_4:2601668-2601687 Msa0970940:intron 45.0%
TAAGCCAGTGCCAAAGACAA+AGG + chr6_4:2601721-2601740 Msa0970940:CDS 45.0%
!!! TTTTTTGTTGGGTGAGGGGT+TGG + chr6_4:2601855-2601874 Msa0970940:three_prime_UTR 45.0%
!! ATTTAAATAAATAGTATATT+TGG + chr6_4:2600916-2600935 Msa0970940:intron 5.0%
!!! TTTATTTTTATTTTTTTTGT+TGG + chr6_4:2601843-2601862 Msa0970940:three_prime_UTR 5.0%
!!! TTATTTTTATTTTTTTTGTT+GGG + chr6_4:2601844-2601863 Msa0970940:three_prime_UTR 5.0%
! TGCTGCTTCTTCTGTTCCTG+AGG + chr6_4:2596505-2596524 Msa0970940:CDS 50.0%
CTGAGGCACAGAGTGATGAA+GGG + chr6_4:2596522-2596541 Msa0970940:CDS 50.0%
! GCGTGAGTTAGATTCTGGAG+TGG + chr6_4:2597121-2597140 Msa0970940:intron 50.0%
!! TTCTGGAGTGGGAAGGGAAT+AGG + chr6_4:2597133-2597152 Msa0970940:intron 50.0%
! TCTGGAGTGGGAAGGGAATA+GGG + chr6_4:2597134-2597153 Msa0970940:intron 50.0%
ACGACACTGAAACGTCGACA+AGG - chr6_4:2597322-2597341 None:intergenic 50.0%
AATGTATGAGCCACGGCAAG+TGG - chr6_4:2598355-2598374 None:intergenic 50.0%
ACTTGCCGTGGCTCATACAT+TGG + chr6_4:2598354-2598373 Msa0970940:CDS 50.0%
CTTGCCGTGGCTCATACATT+GGG + chr6_4:2598355-2598374 Msa0970940:CDS 50.0%
GATGAACGGAAGACACATCC+AGG - chr6_4:2598665-2598684 None:intergenic 50.0%
TTCCCTCTGTTTGTCTCTGC+TGG - chr6_4:2598811-2598830 None:intergenic 50.0%
TGACACCGCCTCGTACATTT+AGG + chr6_4:2598865-2598884 Msa0970940:intron 50.0%
TCTACCTATAGTTGGGGGAG+TGG + chr6_4:2599197-2599216 Msa0970940:CDS 50.0%
AATGCCACTCCCCCAACTAT+AGG - chr6_4:2599204-2599223 None:intergenic 50.0%
TATAGTTGGGGGAGTGGCAT+TGG + chr6_4:2599203-2599222 Msa0970940:CDS 50.0%
TCCTTCGTACCTGCAATCTG+CGG + chr6_4:2599841-2599860 Msa0970940:CDS 50.0%
GTCCCCACGAAAGCAAAACA+AGG + chr6_4:2599979-2599998 Msa0970940:intron 50.0%
! GTGCCGACCTCCATGATAAA+AGG - chr6_4:2601063-2601082 None:intergenic 50.0%
TCACCTGTGACACACTCAGT+CGG + chr6_4:2601354-2601373 Msa0970940:CDS 50.0%
TTTCCGACTGAGTGTGTCAC+AGG - chr6_4:2601360-2601379 None:intergenic 50.0%
TGACAGGTGAGACAGGAGTT+TGG - chr6_4:2601428-2601447 None:intergenic 50.0%
!! GACTTACCAAGGGCATTGAC+AGG - chr6_4:2601444-2601463 None:intergenic 50.0%
GCTTCCTTTGTCTTTGGCAC+TGG - chr6_4:2601728-2601747 None:intergenic 50.0%
CCTTCATCACTCTGTGCCTC+AGG - chr6_4:2596524-2596543 None:intergenic 55.0%
CCTGAGGCACAGAGTGATGA+AGG + chr6_4:2596521-2596540 Msa0970940:CDS 55.0%
CGACGTTTCAGTGTCGTGTC+CGG + chr6_4:2597325-2597344 Msa0970940:intron 55.0%
CCAACGAAGCAAAGCCGAAC+TGG - chr6_4:2598136-2598155 None:intergenic 55.0%
CCAGTTCGGCTTTGCTTCGT+TGG + chr6_4:2598133-2598152 Msa0970940:CDS 55.0%
TATGAGCCACGGCAAGTGGA+AGG - chr6_4:2598351-2598370 None:intergenic 55.0%
ACCGCAGATTGCAGGTACGA+AGG - chr6_4:2599845-2599864 None:intergenic 55.0%
CTGCTTCCATGCATACCAGC+AGG + chr6_4:2600233-2600252 Msa0970940:CDS 55.0%
TCCATGCATACCAGCAGGTG+AGG + chr6_4:2600238-2600257 Msa0970940:intron 55.0%
ACCTCACCTGCTGGTATGCA+TGG - chr6_4:2600242-2600261 None:intergenic 55.0%
!! AGGGCATTGACAGGTGAGAC+AGG - chr6_4:2601435-2601454 None:intergenic 55.0%
GTCTCACCTGTCAATGCCCT+TGG + chr6_4:2601435-2601454 Msa0970940:CDS 55.0%
CGTTTCAGTGTCGTGTCCGG+TGG + chr6_4:2597328-2597347 Msa0970940:intron 60.0%
GGCAATCCTTCCACTTGCCG+TGG + chr6_4:2598342-2598361 Msa0970940:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 2596192 2602042 2596192 ID=Msa0970940;Name=Msa0970940
chr6_4 mRNA 2596192 2602042 2596192 ID=Msa0970940-mRNA-1;Parent=Msa0970940;Name=Msa0970940-mRNA-1;_AED=0.08;_eAED=0.08;_QI=35|1|1|1|1|1|9|291|424
chr6_4 exon 2596192 2596643 2596192 ID=Msa0970940-mRNA-1:exon:1292;Parent=Msa0970940-mRNA-1
chr6_4 exon 2598092 2598214 2598092 ID=Msa0970940-mRNA-1:exon:1293;Parent=Msa0970940-mRNA-1
chr6_4 exon 2598337 2598489 2598337 ID=Msa0970940-mRNA-1:exon:1294;Parent=Msa0970940-mRNA-1
chr6_4 exon 2599168 2599253 2599168 ID=Msa0970940-mRNA-1:exon:1295;Parent=Msa0970940-mRNA-1
chr6_4 exon 2599576 2599660 2599576 ID=Msa0970940-mRNA-1:exon:1296;Parent=Msa0970940-mRNA-1
chr6_4 exon 2599743 2599862 2599743 ID=Msa0970940-mRNA-1:exon:1297;Parent=Msa0970940-mRNA-1
chr6_4 exon 2600177 2600254 2600177 ID=Msa0970940-mRNA-1:exon:1298;Parent=Msa0970940-mRNA-1
chr6_4 exon 2601327 2601456 2601327 ID=Msa0970940-mRNA-1:exon:1299;Parent=Msa0970940-mRNA-1
chr6_4 exon 2601669 2602042 2601669 ID=Msa0970940-mRNA-1:exon:1300;Parent=Msa0970940-mRNA-1
chr6_4 five_prime_UTR 2596192 2596226 2596192 ID=Msa0970940-mRNA-1:five_prime_utr;Parent=Msa0970940-mRNA-1
chr6_4 CDS 2596227 2596643 2596227 ID=Msa0970940-mRNA-1:cds;Parent=Msa0970940-mRNA-1
chr6_4 CDS 2598092 2598214 2598092 ID=Msa0970940-mRNA-1:cds;Parent=Msa0970940-mRNA-1
chr6_4 CDS 2598337 2598489 2598337 ID=Msa0970940-mRNA-1:cds;Parent=Msa0970940-mRNA-1
chr6_4 CDS 2599168 2599253 2599168 ID=Msa0970940-mRNA-1:cds;Parent=Msa0970940-mRNA-1
chr6_4 CDS 2599576 2599660 2599576 ID=Msa0970940-mRNA-1:cds;Parent=Msa0970940-mRNA-1
chr6_4 CDS 2599743 2599862 2599743 ID=Msa0970940-mRNA-1:cds;Parent=Msa0970940-mRNA-1
chr6_4 CDS 2600177 2600254 2600177 ID=Msa0970940-mRNA-1:cds;Parent=Msa0970940-mRNA-1
chr6_4 CDS 2601327 2601456 2601327 ID=Msa0970940-mRNA-1:cds;Parent=Msa0970940-mRNA-1
chr6_4 CDS 2601669 2601751 2601669 ID=Msa0970940-mRNA-1:cds;Parent=Msa0970940-mRNA-1
chr6_4 three_prime_UTR 2601752 2602042 2601752 ID=Msa0970940-mRNA-1:three_prime_utr;Parent=Msa0970940-mRNA-1
Gene Sequence

>Msa0970940

ATGCAACAAACAACTATGTCTCCTTATTTTCTCTCATCAAACCTCAACATGCATAATCTCTATGTCTCACCTTCTTCTTCAACCTTACACCTTTCAAACCACATAACCAAACCAAAATTTCACCCTTTTCAAAATACTCATTCTCACAATTTTTCTTCTTCACCACTTAGACTCACCATTGATGGATTTTCATGCCCATCTTCTTCTTTCTTCCAAACTGTTAGAAAATCTTCACCTTTCTTCATTTCAAATCCAAAAATGGATTCTTTTAGAGTCTTTGCTGCTTCTTCTGTTCCTGAGGCACAGAGTGATGAAGGGAAACAACAAACTTCTGGGCTTGTTCAGTCTCTTCAGCTTGGTTTCATGTTTGCTACTTGGTATCTCTTGAATATTTATTTCAACATTTACAACAAACAGGTTCTAAAAGTCTATCCATTTCCAGCAACAGTTACAACATTCCAGTTCGGCTTTGCTTCGTTGGTGATCAATTTGATCTGGACATTGAATCTTCATCCTAGACCAAAAATTAGTAGATCACAGCTTACGGCAATCCTTCCACTTGCCGTGGCTCATACATTGGGAAACCTTTTGACGAACATTAGTCTTGGCAAGGTTGCTGTATCTTTCACTCACACCATCAAATCTATGGAACCTTTCTTCACTGTTGTTCTTTCATCTCTTCTTTTGGGTGAGATGCCTACTTTATGGGTGGTTTCTTCTCTTCTACCTATAGTTGGGGGAGTGGCATTGGCATCGATGACTGAAGTCTCTTTCAATTGGATTGGATTCAGCACTGCAATGGCTTCCAACCTTACGAATCAATCACGGAATGTTTTGAGCAAAAAACTAATGGCTAACGAAGAGGAAGCTTTGGACAATATCAATCTCTACTCAGTTATAACCATCATTTCATTTTTCCTGTTGGTACCATATGCTATATTTTCGGAGGGTGTCAAGTTTACTCCTTCGTACCTGCAATCTGCGGCAAGCCAAGGATTGAATGTTCGAGAGCTATGTATAAGATCCGTTTTGGCTGCATTCTGCTTCCATGCATACCAGCAGGTTTCATATGGGATATTAGAGAAAGTGTCACCTGTGACACACTCAGTCGGAAATTGCGTTAAGCGTGTCGTTGTCATCGTCTCTTCAGTTATCTTTTTCCAAACTCCTGTCTCACCTGTCAATGCCCTTGGAACTGCTATTGCACTTGTTGGAGTTTTCTTGTATTCAAGGGCAAAGAGGATTAAGCCAGTGCCAAAGACAAAGGAAGCATAA

Protein sequence

>Msa0970940

MQQTTMSPYFLSSNLNMHNLYVSPSSSTLHLSNHITKPKFHPFQNTHSHNFSSSPLRLTIDGFSCPSSSFFQTVRKSSPFFISNPKMDSFRVFAASSVPEAQSDEGKQQTSGLVQSLQLGFMFATWYLLNIYFNIYNKQVLKVYPFPATVTTFQFGFASLVINLIWTLNLHPRPKISRSQLTAILPLAVAHTLGNLLTNISLGKVAVSFTHTIKSMEPFFTVVLSSLLLGEMPTLWVVSSLLPIVGGVALASMTEVSFNWIGFSTAMASNLTNQSRNVLSKKLMANEEEALDNINLYSVITIISFFLLVPYAIFSEGVKFTPSYLQSAASQGLNVRELCIRSVLAAFCFHAYQQVSYGILEKVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPVNALGTAIALVGVFLYSRAKRIKPVPKTKEA*