AlfalfaGEDB | Msa0274000

M. sativa cultivar zhongmu-4 / Msa0274000

KEGG: -
GO: GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944
PFAM: PF00657.25

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0274000	KEH36672.1	96.667	180	6	0	1	180	198	377	8.72e-126	369

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0274000	sp\|Q9C7N4\|GDL15_ARATH	43.195	169	87	5	2	163	196	362	2.50e-36	132

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0274000	0.807658	4.539182e-50	-8.615850e-47
Msa0000220	Msa0274000	0.824145	9.458863e-54	-8.615850e-47
Msa0000610	Msa0274000	0.811551	6.617708e-51	-8.615850e-47
Msa0002690	Msa0274000	0.841973	3.433433e-58	-8.615850e-47
Msa0002700	Msa0274000	0.854729	1.013742e-61	-8.615850e-47
Msa0003370	Msa0274000	0.854560	1.135057e-61	-8.615850e-47
Msa0004180	Msa0274000	0.809624	1.725547e-50	-8.615850e-47
Msa0005500	Msa0274000	0.826562	2.533631e-54	-8.615850e-47
Msa0009210	Msa0274000	0.802605	5.182700e-49	-8.615850e-47
Msa0015220	Msa0274000	0.800104	1.685145e-48	-8.615850e-47

Showing 1 to 10 of 1,054 entries

Previous1 2 3 4 5…106Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0274000	MtrunA17_Chr2g0285001	96.667	180	6	0	1	180	198	377	8.02e-130	369
Msa0274000	MtrunA17_Chr2g0284991	70.109	184	51	1	1	180	197	380	1.63e-86	259
Msa0274000	MtrunA17_Chr2g0284951	72.222	180	45	2	1	180	197	371	1.85e-85	256
Msa0274000	MtrunA17_Chr2g0284941	65.556	180	41	2	1	180	197	355	2.27e-74	227
Msa0274000	MtrunA17_Chr2g0284921	50.617	162	78	2	2	163	201	360	1.00e-49	164
Msa0274000	MtrunA17_Chr3g0085881	47.531	162	79	4	2	163	197	352	6.82e-40	138
Msa0274000	MtrunA17_Chr8g0380041	43.529	170	86	6	2	163	195	362	1.84e-37	132
Msa0274000	MtrunA17_Chr8g0380031	44.512	164	85	4	1	163	247	405	1.56e-36	130
Msa0274000	MtrunA17_Chr2g0284931	51.240	121	57	2	43	163	101	219	1.35e-34	121
Msa0274000	MtrunA17_Chr2g0284981	59.140	93	34	1	92	180	8	100	2.90e-33	114

Showing 1 to 10 of 52 entries

Previous1 2 3 4 5 6Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0274000	AT1G29670.1	43.195	169	87	5	2	163	196	362	2.54e-37	132
Msa0274000	AT1G29670.2	43.195	169	87	5	2	163	264	430	1.59e-36	131
Msa0274000	AT4G18970.1	38.824	170	94	6	2	163	193	360	1.06e-30	114
Msa0274000	AT1G29660.1	40.000	170	92	6	2	163	196	363	2.32e-30	114
Msa0274000	AT4G18970.2	38.824	170	94	6	2	163	193	360	3.51e-30	114
Msa0274000	AT5G45670.1	39.286	168	92	6	2	161	194	359	1.36e-29	112
Msa0274000	AT1G71691.1	34.132	167	99	6	2	161	117	279	3.09e-26	101
Msa0274000	AT1G71691.2	34.132	167	99	6	2	161	218	380	2.83e-25	100
Msa0274000	AT5G15720.3	34.302	172	99	5	2	163	165	332	4.02e-25	99.4
Msa0274000	AT5G15720.1	34.302	172	99	5	2	163	196	363	9.79e-25	99.0

Showing 1 to 10 of 45 entries

Previous1 2 3 4 5Next

Find 44 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACATATTCCCTCCTAT+TGG	0.405109	2_3:-5767575	None:intergenic
AAAGGCCATGCTCCAATAGG+AGG	0.561115	2_3:+5767563	Msa0274000:CDS
AAATATGTGTTACCTGGGTT+AGG	0.497677	2_3:+5767163	Msa0274000:CDS
AAGGCCATGCTCCAATAGGA+GGG	0.650431	2_3:+5767564	Msa0274000:CDS
ACAAGAAATCGAGATGGAAT+TGG	0.367083	2_3:+5767711	Msa0274000:CDS
ACAAGGTGCTTAATATCCAT+TGG	0.485696	2_3:-5767685	None:intergenic
ACCCATATGTCTCATGAGTA+AGG	0.468364	2_3:-5767213	None:intergenic
ACCGAGCTTATTGGACAACA+AGG	0.654970	2_3:-5767520	None:intergenic
ACGATGTTGTGGCAATGAGT+AGG	0.619695	2_3:-5767630	None:intergenic
ACGATTCATCTAATCATTCA+GGG	0.515961	2_3:+5767653	Msa0274000:CDS

Showing 1 to 10 of 44 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGCATTTGGTATATGTAAC+AGG	+	chr2_3:5767117-5767136	Msa0274000:intron	30.0%
CAAGAAAATATGTGTTACCT+GGG	+	chr2_3:5767158-5767177	Msa0274000:CDS	30.0%
TACGATTCATCTAATCATTC+AGG	+	chr2_3:5767652-5767671	Msa0274000:CDS	30.0%
ACGATTCATCTAATCATTCA+GGG	+	chr2_3:5767653-5767672	Msa0274000:CDS	30.0%
AAGCATTTGGTATATGTAAC+AGG	+	chr2_3:5767117-5767136	Msa0274000:intron	30.0%
CAAGAAAATATGTGTTACCT+GGG	+	chr2_3:5767158-5767177	Msa0274000:CDS	30.0%
TACGATTCATCTAATCATTC+AGG	+	chr2_3:5767652-5767671	Msa0274000:CDS	30.0%
ACGATTCATCTAATCATTCA+GGG	+	chr2_3:5767653-5767672	Msa0274000:CDS	30.0%
AGTGAAACACAAAGTTCAAG+TGG	-	chr2_3:5767036-5767055	None:intergenic	35.0%
TAACAGGCTTTACATGATCT+TGG	+	chr2_3:5767133-5767152	Msa0274000:intron	35.0%

Showing 1 to 10 of 108 entries

Previous1 2 3 4 5…11Next

Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	5766996	5767765	5766996	ID=Msa0274000;Name=Msa0274000
chr2_3	mRNA	5766996	5767765	5766996	ID=Msa0274000-mRNA-1;Parent=Msa0274000;Name=Msa0274000-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0\|0\|0\|1\|1\|1\|3\|0\|180
chr2_3	exon	5766996	5767028	5766996	ID=Msa0274000-mRNA-1:exon:2693;Parent=Msa0274000-mRNA-1
chr2_3	exon	5767139	5767382	5767139	ID=Msa0274000-mRNA-1:exon:2694;Parent=Msa0274000-mRNA-1
chr2_3	exon	5767500	5767765	5767500	ID=Msa0274000-mRNA-1:exon:2695;Parent=Msa0274000-mRNA-1
chr2_3	CDS	5766996	5767028	5766996	ID=Msa0274000-mRNA-1:cds;Parent=Msa0274000-mRNA-1
chr2_3	CDS	5767139	5767382	5767139	ID=Msa0274000-mRNA-1:cds;Parent=Msa0274000-mRNA-1
chr2_3	CDS	5767500	5767765	5767500	ID=Msa0274000-mRNA-1:cds;Parent=Msa0274000-mRNA-1

Gene Sequence

>Msa0274000

TCTCTAATTGAAGAGTTATCATTGAATTTACAGGCTTTACATGATCTTGGAGCAAGAAAATATGTGTTACCTGGGTTAGGCCTATTGGGATGCACTCCAAGTGCCATCCTTACTCATGAGACATATGGGTCTTGTGTTGAGGAGCAAAATGACATTGCATCCATTTTTGATTTCAAGCTTAAATCTTTAGTAGATCACTTCAATAATAAGTTCTCTGCTGATTCCAAATTCATCTTAATAAACAATACATTACAGTCAACTGCCGAGCATTCATATGGTTTTTCGGTTTCAATGGCTCCTTGTTGTCCAATAAGCTCGGTTGGATTGTGTATTCGTGATGAAAGGCCATGCTCCAATAGGAGGGAATATGTGTTTTGGGATGCAGTCCATCCCGGCGAGGCTTGGAACCTACTCATTGCCACAACATCGTACGATTCATCTAATCATTCAGGGTTCGCTTATCCAATGGATATTAAGCACCTTGTTGAACAAGAAATCGAGATGGAATTGGATTTCACTTCACAGCTTAGTGCCTCTGCTTAA

Protein sequence

>Msa0274000

SLIEELSLNLQALHDLGARKYVLPGLGLLGCTPSAILTHETYGSCVEEQNDIASIFDFKLKSLVDHFNNKFSADSKFILINNTLQSTAEHSYGFSVSMAPCCPISSVGLCIRDERPCSNRREYVFWDAVHPGEAWNLLIATTSYDSSNHSGFAYPMDIKHLVEQEIEMELDFTSQLSASA*