AlfalfaGEDB | Msa1246630

M. sativa cultivar zhongmu-4 / Msa1246630

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1246630	KEH19637.1	97.458	118	3	0	1	118	435	552	7.26e-73	241

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1246630	sp\|O81832\|Y4729_ARATH	61.017	118	46	0	3	120	436	553	5.02e-46	161

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1246630	A0A072TQF1	97.458	118	3	0	1	118	435	552	3.47e-73	241

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0039200	Msa1246630	0.804589	2.009347e-49	-8.615850e-47
Msa0053960	Msa1246630	0.806555	7.769876e-50	-8.615850e-47
Msa0062750	Msa1246630	0.829185	5.929805e-55	-8.615850e-47
Msa0077330	Msa1246630	0.805350	1.392647e-49	-8.615850e-47
Msa0133670	Msa1246630	0.801358	9.352205e-49	-8.615850e-47
Msa0153640	Msa1246630	0.812218	4.735718e-51	-8.615850e-47
Msa0164630	Msa1246630	0.813637	2.313670e-51	-8.615850e-47
Msa0169960	Msa1246630	0.809035	2.309147e-50	-8.615850e-47
Msa0181290	Msa1246630	0.814476	1.511438e-51	-8.615850e-47
Msa0181410	Msa1246630	0.814498	1.494353e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1246630	MtrunA17_Chr8g0361281	97.458	118	3	0	1	118	483	600	1.02e-76	242
Msa1246630	MtrunA17_Chr3g0078881	67.213	122	38	2	3	123	21	141	3.90e-53	163
Msa1246630	MtrunA17_Chr5g0422921	68.142	113	36	0	6	118	473	585	1.45e-50	171
Msa1246630	MtrunA17_Chr5g0428111	71.963	107	30	0	12	118	484	590	1.50e-50	171
Msa1246630	MtrunA17_Chr3g0093161	68.966	116	36	0	6	121	472	587	9.22e-50	168
Msa1246630	MtrunA17_Chr5g0428101	68.644	118	37	0	1	118	471	588	2.56e-49	167
Msa1246630	MtrunA17_Chr8g0361251	66.667	111	37	0	8	118	483	593	3.89e-48	164
Msa1246630	MtrunA17_Chr3g0078541	74.074	108	27	1	12	118	510	617	4.33e-48	164
Msa1246630	MtrunA17_Chr3g0078521	67.227	119	38	1	1	118	488	606	5.70e-48	164
Msa1246630	MtrunA17_Chr6g0453571	63.248	117	43	0	3	119	312	428	7.67e-48	158

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1246630	AT4G27290.1	61.017	118	46	3	120	436	553	5.10e-47	161
Msa1246630	AT4G27290.2	61.017	118	46	3	120	482	599	5.73e-46	158
Msa1246630	AT4G21390.1	66.990	103	34	16	118	513	615	2.23e-45	157
Msa1246630	AT1G11340.1	64.815	108	38	11	118	494	601	3.29e-44	153
Msa1246630	AT1G11340.2	64.815	108	38	11	118	562	669	4.14e-44	153
Msa1246630	AT4G27300.1	66.071	112	38	7	118	475	586	5.02e-44	153
Msa1246630	AT1G11410.2	63.636	110	40	9	118	385	494	6.47e-44	152
Msa1246630	AT1G11340.3	64.815	108	38	11	118	562	669	6.71e-44	152
Msa1246630	AT1G11410.3	63.636	110	40	9	118	476	585	7.25e-44	152
Msa1246630	AT1G11410.1	63.636	110	40	9	118	500	609	7.57e-44	152

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Find 21 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCAAGAACCTTAACT+AGG	0.597166	8_2:-38308100	None:intergenic
AAACTTGGTGAAGGTGGTTT+TGG	0.288442	8_2:+38307837	Msa1246630:CDS
AATCAACGAATTTAAGAATG+AGG	0.500415	8_2:+38308046	Msa1246630:CDS
AATGACAACAAACTTGGTGA+AGG	0.646564	8_2:+38307828	Msa1246630:CDS
ACTGCTATATCTTGTCCATC+TGG	0.426978	8_2:-38307993	None:intergenic
ACTTAACCTACCTTATACAC+AGG	0.578491	8_2:-38307861	None:intergenic
AGGAACCTAGTTAAGGTTCT+TGG	0.285718	8_2:+38308095	Msa1246630:CDS
ATTATACCAAAGTCAAACAA+AGG	0.627774	8_2:-38307780	None:intergenic
CCAACATAGGAACCTAGTTA+AGG	0.490671	8_2:+38308088	Msa1246630:CDS
CCTTAACTAGGTTCCTATGT+TGG	0.520303	8_2:-38308088	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTCAAATGACAACAAACT+TGG	+	chr8_2:38307822-38307841	Msa1246630:CDS	30.0%
GTCATTTGAGAAGTCATTAG+TGG	-	chr8_2:38307814-38307833	None:intergenic	35.0%
ACTTAACCTACCTTATACAC+AGG	-	chr8_2:38307864-38307883	None:intergenic	35.0%
TTTGTTCCAAACTCCAACAT+AGG	+	chr8_2:38308075-38308094	Msa1246630:CDS	35.0%
AAAACCCAAGAACCTTAACT+AGG	-	chr8_2:38308103-38308122	None:intergenic	35.0%
TTTGGTCCTGTGTATAAGGT+AGG	+	chr8_2:38307855-38307874	Msa1246630:intron	40.0%
ACTGCTATATCTTGTCCATC+TGG	-	chr8_2:38307996-38308015	None:intergenic	40.0%
CTTTCACATACCTCTACTCA+AGG	+	chr8_2:38308023-38308042	Msa1246630:CDS	40.0%
TAGGTTCCTATGTTGGAGTT+TGG	-	chr8_2:38308084-38308103	None:intergenic	40.0%
CCTTAACTAGGTTCCTATGT+TGG	-	chr8_2:38308091-38308110	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	38307715	38308217	38307715	ID=Msa1246630;Name=Msa1246630
chr8_2	mRNA	38307715	38308217	38307715	ID=Msa1246630-mRNA-1;Parent=Msa1246630;Name=Msa1246630-mRNA-1;_AED=0.46;_eAED=0.48;_QI=14\|0\|0\|1\|1\|1\|2\|0\|126
chr8_2	exon	38307715	38307872	38307715	ID=Msa1246630-mRNA-1:exon:11970;Parent=Msa1246630-mRNA-1
chr8_2	exon	38307984	38308217	38307984	ID=Msa1246630-mRNA-1:exon:11971;Parent=Msa1246630-mRNA-1
chr8_2	five_prime_UTR	38307715	38307728	38307715	ID=Msa1246630-mRNA-1:five_prime_utr;Parent=Msa1246630-mRNA-1
chr8_2	CDS	38307729	38307872	38307729	ID=Msa1246630-mRNA-1:cds;Parent=Msa1246630-mRNA-1
chr8_2	CDS	38307984	38308217	38307984	ID=Msa1246630-mRNA-1:cds;Parent=Msa1246630-mRNA-1

Gene Sequence	>Msa1246630 ATGAAGACAAAAGTAAAGAGAAGTGAAATGAAACAAGAAGATTTGGAACTTCCTTTGTTTGACTTTGGTATAATAACATTTGCCACTAATGACTTCTCAAATGACAACAAACTTGGTGAAGGTGGTTTTGGTCCTGTGTATAAGGGCACATTACCAGATGGACAAGATATAGCAGTTAAACGACTTTCACATACCTCTACTCAAGGAATCAACGAATTTAAGAATGAGGTTGTATTTTGTTCCAAACTCCAACATAGGAACCTAGTTAAGGTTCTTGGGTTTTGCATTGAAGAACATGAGAAATTACTCATCTATGAATATATGCCCAATAAAAGCTTAGACTTCTTTCTTTTTGGTAAGTATCTATTCAAAAATTGT
Protein sequence	>Msa1246630 MKTKVKRSEMKQEDLELPLFDFGIITFATNDFSNDNKLGEGGFGPVYKGTLPDGQDIAVKRLSHTSTQGINEFKNEVVFCSKLQHRNLVKVLGFCIEEHEKLLIYEYMPNKSLDFFLFGKYLFKNC