AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0801390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0801390 MtrunA17_Chr5g0408241 91.150 113 10 0 5 117 13 125 1.11e-64 209
Msa0801390 MtrunA17_Chr8g0369761 48.214 112 53 1 3 114 1 107 4.24e-21 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 46 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGGGAAAGTGTGTATAAA+AGG 0.217807 5_3:-15297645 None:intergenic
TGGTTTCTGTCTACATGGTT+AGG 0.272649 5_3:+15297579 Msa0801390:three_prime_UTR
TTGTTCTGAACAACATTCTA+AGG 0.279704 5_3:-15297728 None:intergenic
AACTTTAGTACCATTGTCAT+TGG 0.342432 5_3:-15297549 None:intergenic
TGGTACTAAAGTTGGTGTTA+TGG 0.374436 5_3:+15297559 Msa0801390:three_prime_UTR
CGTTTGTGTAGAGGTAAATC+AGG 0.376447 5_3:-15297663 None:intergenic
ATAATTATATATTTATATCA+TGG 0.406658 5_3:-15296285 None:intergenic
CGTATTTCAGCTTCCATGGC+TGG 0.407420 5_3:+15296716 Msa0801390:CDS
TAGAAAGGATAGTTTCAGAT+TGG 0.419331 5_3:+15296472 Msa0801390:CDS
GGTTTCTGTCTACATGGTTA+GGG 0.431876 5_3:+15297580 Msa0801390:three_prime_UTR
GGAAGCTGAAATACGGTAGA+AGG 0.433466 5_3:-15296708 None:intergenic
GCCAACAGATTATGCAATCT+TGG 0.434426 5_3:+15297685 Msa0801390:three_prime_UTR
ATATATTTATATCATGGAAA+AGG 0.446628 5_3:-15296279 None:intergenic
AGAAAGGATAGTTTCAGATT+GGG 0.448247 5_3:+15296473 Msa0801390:CDS
CTACCGTATTTCAGCTTCCA+TGG 0.449137 5_3:+15296712 Msa0801390:CDS
TTACCTGAGTGAAGAAGATT+AGG 0.450249 5_3:-15297767 None:intergenic
GGAACAAAGTCATTGATAGA+AGG 0.463513 5_3:-15296656 None:intergenic
TAGGAAGGGTAGCTTTAGAA+AGG 0.469277 5_3:+15296457 Msa0801390:CDS
GGAAAATAGCTTGAGAGAGA+AGG 0.470547 5_3:-15296258 None:intergenic
GACATGGAGAATAGTAATAG+TGG 0.471196 5_3:+15296410 Msa0801390:CDS
AATGACAATGGTACTAAAGT+TGG 0.471554 5_3:+15297551 Msa0801390:three_prime_UTR
GATTCGTCGTCGTCGGAGAC+AGG 0.475074 5_3:-15296677 None:intergenic
TCACAAACTCTCTTTCTGTT+AGG 0.475121 5_3:+15296594 Msa0801390:CDS
TGTTATGGTTTCTGTCTACA+TGG 0.479156 5_3:+15297574 Msa0801390:three_prime_UTR
AAAAGAAACTATCGAGGGTA+TGG 0.489501 5_3:+15296347 Msa0801390:five_prime_UTR
CAGGGAAAGTGTGTATAAAA+GGG 0.494879 5_3:-15297644 None:intergenic
GAAAATAGCTTGAGAGAGAA+GGG 0.510226 5_3:-15296257 None:intergenic
GTGTATAAAAGGGAACTTTG+TGG 0.515128 5_3:-15297634 None:intergenic
CAGCCATGGAAGCTGAAATA+CGG 0.530516 5_3:-15296715 None:intergenic
ATCTGTTGGCGTTTGTGTAG+AGG 0.531304 5_3:-15297672 None:intergenic
GATCACACAGTGGTTGAGCT+AGG 0.545146 5_3:+15296503 Msa0801390:CDS
AAGGATAGTTTCAGATTGGG+AGG 0.546950 5_3:+15296476 Msa0801390:CDS
ACGTTCAGGTGTTCCAGCCA+TGG 0.550679 5_3:-15296729 None:intergenic
ACCAAGATTGCATAATCTGT+TGG 0.551313 5_3:-15297686 None:intergenic
AGTATCTGAGAGAGCAGTGA+GGG 0.572897 5_3:-15296627 None:intergenic
GTTGTTTATGTGCAGCTTGG+GGG 0.591555 5_3:+15297501 Msa0801390:intron
AAAAGTGGTAGCTTTAGGAA+GGG 0.598113 5_3:+15296443 Msa0801390:CDS
ATTATAGAGCAACATGGACA+TGG 0.609231 5_3:+15296394 Msa0801390:exon
TCTCCTAATCTTCTTCACTC+AGG 0.614451 5_3:+15297764 Msa0801390:three_prime_UTR
AGCAGCGGATTCGTCGTCGT+CGG 0.630964 5_3:-15296684 None:intergenic
GTTTGTGTAGAGGTAAATCA+GGG 0.659201 5_3:-15297662 None:intergenic
ACTGATTCATCCAATGACAA+TGG 0.676312 5_3:+15297539 Msa0801390:three_prime_UTR
GGAAGCATTATAGAGCAACA+TGG 0.691253 5_3:+15296388 Msa0801390:exon
TAGTATCTGAGAGAGCAGTG+AGG 0.721002 5_3:-15296628 None:intergenic
AATACGGTAGAAGGTAGCAG+CGG 0.736624 5_3:-15296699 None:intergenic
GGGAGGAAAAGATCACACAG+TGG 0.818391 5_3:+15296493 Msa0801390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATAAAATAATTTTAACC+GGG - chr5_3:15296828-15296847 None:intergenic 10.0%
!!! ATATAAGTTTTTATATATAG+TGG + chr5_3:15296945-15296964 Msa0801390:intron 10.0%
!!! GATATATATTTTTAATTAGA+AGG + chr5_3:15297404-15297423 Msa0801390:intron 10.0%
!!! TATATAAAATAATTTTAACC+GGG - chr5_3:15296828-15296847 None:intergenic 10.0%
!!! ATATAAGTTTTTATATATAG+TGG + chr5_3:15296945-15296964 Msa0801390:intron 10.0%
!!! GATATATATTTTTAATTAGA+AGG + chr5_3:15297404-15297423 Msa0801390:intron 10.0%
!! ATATATTTATATCATGGAAA+AGG - chr5_3:15296282-15296301 None:intergenic 15.0%
!!! ATATAAAATAATTTTAACCG+GGG - chr5_3:15296827-15296846 None:intergenic 15.0%
!!! TTTTATGTCTTAAATTTTGT+TGG + chr5_3:15297190-15297209 Msa0801390:intron 15.0%
!! ATATATTTATATCATGGAAA+AGG - chr5_3:15296282-15296301 None:intergenic 15.0%
!!! ATATAAAATAATTTTAACCG+GGG - chr5_3:15296827-15296846 None:intergenic 15.0%
!!! TTTTATGTCTTAAATTTTGT+TGG + chr5_3:15297190-15297209 Msa0801390:intron 15.0%
!!! TATAAAATAATTTTAACCGG+GGG - chr5_3:15296826-15296845 None:intergenic 20.0%
!!! TGTTGTATGAATTAATGTTT+TGG + chr5_3:15297473-15297492 Msa0801390:intron 20.0%
!!! TATGAATTAATGTTTTGGTT+TGG + chr5_3:15297478-15297497 Msa0801390:intron 20.0%
!!! ATGAATTAATGTTTTGGTTT+GGG + chr5_3:15297479-15297498 Msa0801390:intron 20.0%
!!! TATAAAATAATTTTAACCGG+GGG - chr5_3:15296826-15296845 None:intergenic 20.0%
!!! TGTTGTATGAATTAATGTTT+TGG + chr5_3:15297473-15297492 Msa0801390:intron 20.0%
!!! TATGAATTAATGTTTTGGTT+TGG + chr5_3:15297478-15297497 Msa0801390:intron 20.0%
!!! ATGAATTAATGTTTTGGTTT+GGG + chr5_3:15297479-15297498 Msa0801390:intron 20.0%
!! TTTTATAGGCAAGAAAACAA+AGG - chr5_3:15296330-15296349 None:intergenic 25.0%
! CTATAAAAAGAAACTATCGA+GGG + chr5_3:15296342-15296361 Msa0801390:five_prime_UTR 25.0%
!!! TAAAGCTACCACTTTTTATT+TGG - chr5_3:15296439-15296458 None:intergenic 25.0%
! AAATAAAAAGTGGTAGCTTT+AGG + chr5_3:15296438-15296457 Msa0801390:CDS 25.0%
!! ACACAAAAACTTCTTTTAGA+AGG + chr5_3:15296536-15296555 Msa0801390:CDS 25.0%
!! TTAGGGACAATAATTTTATG+TGG + chr5_3:15297597-15297616 Msa0801390:three_prime_UTR 25.0%
!! ACAATAATTTTATGTGGCAT+GGG + chr5_3:15297603-15297622 Msa0801390:three_prime_UTR 25.0%
!! TTTTATAGGCAAGAAAACAA+AGG - chr5_3:15296330-15296349 None:intergenic 25.0%
! CTATAAAAAGAAACTATCGA+GGG + chr5_3:15296342-15296361 Msa0801390:five_prime_UTR 25.0%
!!! TAAAGCTACCACTTTTTATT+TGG - chr5_3:15296439-15296458 None:intergenic 25.0%
! AAATAAAAAGTGGTAGCTTT+AGG + chr5_3:15296438-15296457 Msa0801390:CDS 25.0%
!! ACACAAAAACTTCTTTTAGA+AGG + chr5_3:15296536-15296555 Msa0801390:CDS 25.0%
!! TTAGGGACAATAATTTTATG+TGG + chr5_3:15297597-15297616 Msa0801390:three_prime_UTR 25.0%
!! ACAATAATTTTATGTGGCAT+GGG + chr5_3:15297603-15297622 Msa0801390:three_prime_UTR 25.0%
! CCTCGATAGTTTCTTTTTAT+AGG - chr5_3:15296344-15296363 None:intergenic 30.0%
CCTATAAAAAGAAACTATCG+AGG + chr5_3:15296341-15296360 Msa0801390:five_prime_UTR 30.0%
AGTGGAAACCAAATAAAAAG+TGG + chr5_3:15296428-15296447 Msa0801390:CDS 30.0%
TAGAAAGGATAGTTTCAGAT+TGG + chr5_3:15296472-15296491 Msa0801390:CDS 30.0%
AGAAAGGATAGTTTCAGATT+GGG + chr5_3:15296473-15296492 Msa0801390:CDS 30.0%
!! CAAAAACTTCTTTTAGAAGG+TGG + chr5_3:15296539-15296558 Msa0801390:CDS 30.0%
!!! TATTTTTTCTCTTAAACCCC+CGG + chr5_3:15296807-15296826 Msa0801390:intron 30.0%
!! CTAATAAAGTATCGCAATTG+TGG + chr5_3:15297328-15297347 Msa0801390:intron 30.0%
AACTTTAGTACCATTGTCAT+TGG - chr5_3:15297552-15297571 None:intergenic 30.0%
AATGACAATGGTACTAAAGT+TGG + chr5_3:15297551-15297570 Msa0801390:three_prime_UTR 30.0%
! GACAATAATTTTATGTGGCA+TGG + chr5_3:15297602-15297621 Msa0801390:three_prime_UTR 30.0%
! TTGTTCTGAACAACATTCTA+AGG - chr5_3:15297731-15297750 None:intergenic 30.0%
! CCTCGATAGTTTCTTTTTAT+AGG - chr5_3:15296344-15296363 None:intergenic 30.0%
CCTATAAAAAGAAACTATCG+AGG + chr5_3:15296341-15296360 Msa0801390:five_prime_UTR 30.0%
AGTGGAAACCAAATAAAAAG+TGG + chr5_3:15296428-15296447 Msa0801390:CDS 30.0%
TAGAAAGGATAGTTTCAGAT+TGG + chr5_3:15296472-15296491 Msa0801390:CDS 30.0%
AGAAAGGATAGTTTCAGATT+GGG + chr5_3:15296473-15296492 Msa0801390:CDS 30.0%
!! CAAAAACTTCTTTTAGAAGG+TGG + chr5_3:15296539-15296558 Msa0801390:CDS 30.0%
!!! TATTTTTTCTCTTAAACCCC+CGG + chr5_3:15296807-15296826 Msa0801390:intron 30.0%
!! CTAATAAAGTATCGCAATTG+TGG + chr5_3:15297328-15297347 Msa0801390:intron 30.0%
AACTTTAGTACCATTGTCAT+TGG - chr5_3:15297552-15297571 None:intergenic 30.0%
AATGACAATGGTACTAAAGT+TGG + chr5_3:15297551-15297570 Msa0801390:three_prime_UTR 30.0%
! GACAATAATTTTATGTGGCA+TGG + chr5_3:15297602-15297621 Msa0801390:three_prime_UTR 30.0%
! TTGTTCTGAACAACATTCTA+AGG - chr5_3:15297731-15297750 None:intergenic 30.0%
GAAAATAGCTTGAGAGAGAA+GGG - chr5_3:15296260-15296279 None:intergenic 35.0%
AAAAGAAACTATCGAGGGTA+TGG + chr5_3:15296347-15296366 Msa0801390:five_prime_UTR 35.0%
! TGGTTTTTCCATCAAAAGCA+AGG + chr5_3:15296367-15296386 Msa0801390:five_prime_UTR 35.0%
!! TAATGCTTCCTTGCTTTTGA+TGG - chr5_3:15296378-15296397 None:intergenic 35.0%
ATTATAGAGCAACATGGACA+TGG + chr5_3:15296394-15296413 Msa0801390:exon 35.0%
GACATGGAGAATAGTAATAG+TGG + chr5_3:15296410-15296429 Msa0801390:CDS 35.0%
!! AAAAAGTGGTAGCTTTAGGA+AGG + chr5_3:15296442-15296461 Msa0801390:CDS 35.0%
!! AAAAGTGGTAGCTTTAGGAA+GGG + chr5_3:15296443-15296462 Msa0801390:CDS 35.0%
!! AAACTTCTTTTAGAAGGTGG+TGG + chr5_3:15296542-15296561 Msa0801390:CDS 35.0%
TCACAAACTCTCTTTCTGTT+AGG + chr5_3:15296594-15296613 Msa0801390:CDS 35.0%
GGAACAAAGTCATTGATAGA+AGG - chr5_3:15296659-15296678 None:intergenic 35.0%
ATGGGAAAATATACACGTTC+AGG - chr5_3:15296746-15296765 None:intergenic 35.0%
!! AAAGTATCGCAATTGTGGAT+TGG + chr5_3:15297333-15297352 Msa0801390:intron 35.0%
! ACTGATTCATCCAATGACAA+TGG + chr5_3:15297539-15297558 Msa0801390:three_prime_UTR 35.0%
!! TGGTACTAAAGTTGGTGTTA+TGG + chr5_3:15297559-15297578 Msa0801390:three_prime_UTR 35.0%
TGTTATGGTTTCTGTCTACA+TGG + chr5_3:15297574-15297593 Msa0801390:three_prime_UTR 35.0%
GTGTATAAAAGGGAACTTTG+TGG - chr5_3:15297637-15297656 None:intergenic 35.0%
! CAGGGAAAGTGTGTATAAAA+GGG - chr5_3:15297647-15297666 None:intergenic 35.0%
! TCAGGGAAAGTGTGTATAAA+AGG - chr5_3:15297648-15297667 None:intergenic 35.0%
GTTTGTGTAGAGGTAAATCA+GGG - chr5_3:15297665-15297684 None:intergenic 35.0%
ACCAAGATTGCATAATCTGT+TGG - chr5_3:15297689-15297708 None:intergenic 35.0%
GAAAATAGCTTGAGAGAGAA+GGG - chr5_3:15296260-15296279 None:intergenic 35.0%
AAAAGAAACTATCGAGGGTA+TGG + chr5_3:15296347-15296366 Msa0801390:five_prime_UTR 35.0%
! TGGTTTTTCCATCAAAAGCA+AGG + chr5_3:15296367-15296386 Msa0801390:five_prime_UTR 35.0%
!! TAATGCTTCCTTGCTTTTGA+TGG - chr5_3:15296378-15296397 None:intergenic 35.0%
ATTATAGAGCAACATGGACA+TGG + chr5_3:15296394-15296413 Msa0801390:exon 35.0%
GACATGGAGAATAGTAATAG+TGG + chr5_3:15296410-15296429 Msa0801390:CDS 35.0%
!! AAAAAGTGGTAGCTTTAGGA+AGG + chr5_3:15296442-15296461 Msa0801390:CDS 35.0%
!! AAAAGTGGTAGCTTTAGGAA+GGG + chr5_3:15296443-15296462 Msa0801390:CDS 35.0%
!! AAACTTCTTTTAGAAGGTGG+TGG + chr5_3:15296542-15296561 Msa0801390:CDS 35.0%
TCACAAACTCTCTTTCTGTT+AGG + chr5_3:15296594-15296613 Msa0801390:CDS 35.0%
GGAACAAAGTCATTGATAGA+AGG - chr5_3:15296659-15296678 None:intergenic 35.0%
ATGGGAAAATATACACGTTC+AGG - chr5_3:15296746-15296765 None:intergenic 35.0%
!! AAAGTATCGCAATTGTGGAT+TGG + chr5_3:15297333-15297352 Msa0801390:intron 35.0%
! ACTGATTCATCCAATGACAA+TGG + chr5_3:15297539-15297558 Msa0801390:three_prime_UTR 35.0%
!! TGGTACTAAAGTTGGTGTTA+TGG + chr5_3:15297559-15297578 Msa0801390:three_prime_UTR 35.0%
TGTTATGGTTTCTGTCTACA+TGG + chr5_3:15297574-15297593 Msa0801390:three_prime_UTR 35.0%
GTGTATAAAAGGGAACTTTG+TGG - chr5_3:15297637-15297656 None:intergenic 35.0%
! CAGGGAAAGTGTGTATAAAA+GGG - chr5_3:15297647-15297666 None:intergenic 35.0%
! TCAGGGAAAGTGTGTATAAA+AGG - chr5_3:15297648-15297667 None:intergenic 35.0%
GTTTGTGTAGAGGTAAATCA+GGG - chr5_3:15297665-15297684 None:intergenic 35.0%
ACCAAGATTGCATAATCTGT+TGG - chr5_3:15297689-15297708 None:intergenic 35.0%
GGAAAATAGCTTGAGAGAGA+AGG - chr5_3:15296261-15296280 None:intergenic 40.0%
!! GGAAGCATTATAGAGCAACA+TGG + chr5_3:15296388-15296407 Msa0801390:exon 40.0%
!! TAGGAAGGGTAGCTTTAGAA+AGG + chr5_3:15296457-15296476 Msa0801390:CDS 40.0%
AAGGATAGTTTCAGATTGGG+AGG + chr5_3:15296476-15296495 Msa0801390:CDS 40.0%
GCAGCTAGCAAGGTATATAT+GGG - chr5_3:15296764-15296783 None:intergenic 40.0%
TGCAGCTAGCAAGGTATATA+TGG - chr5_3:15296765-15296784 None:intergenic 40.0%
TTTATGAGTTGCAGCTAGCA+AGG - chr5_3:15296774-15296793 None:intergenic 40.0%
TGGTTTCTGTCTACATGGTT+AGG + chr5_3:15297579-15297598 Msa0801390:three_prime_UTR 40.0%
GGTTTCTGTCTACATGGTTA+GGG + chr5_3:15297580-15297599 Msa0801390:three_prime_UTR 40.0%
CGTTTGTGTAGAGGTAAATC+AGG - chr5_3:15297666-15297685 None:intergenic 40.0%
GCCAACAGATTATGCAATCT+TGG + chr5_3:15297685-15297704 Msa0801390:three_prime_UTR 40.0%
GGAAAATAGCTTGAGAGAGA+AGG - chr5_3:15296261-15296280 None:intergenic 40.0%
!! GGAAGCATTATAGAGCAACA+TGG + chr5_3:15296388-15296407 Msa0801390:exon 40.0%
!! TAGGAAGGGTAGCTTTAGAA+AGG + chr5_3:15296457-15296476 Msa0801390:CDS 40.0%
AAGGATAGTTTCAGATTGGG+AGG + chr5_3:15296476-15296495 Msa0801390:CDS 40.0%
GCAGCTAGCAAGGTATATAT+GGG - chr5_3:15296764-15296783 None:intergenic 40.0%
TGCAGCTAGCAAGGTATATA+TGG - chr5_3:15296765-15296784 None:intergenic 40.0%
TTTATGAGTTGCAGCTAGCA+AGG - chr5_3:15296774-15296793 None:intergenic 40.0%
TGGTTTCTGTCTACATGGTT+AGG + chr5_3:15297579-15297598 Msa0801390:three_prime_UTR 40.0%
GGTTTCTGTCTACATGGTTA+GGG + chr5_3:15297580-15297599 Msa0801390:three_prime_UTR 40.0%
CGTTTGTGTAGAGGTAAATC+AGG - chr5_3:15297666-15297685 None:intergenic 40.0%
GCCAACAGATTATGCAATCT+TGG + chr5_3:15297685-15297704 Msa0801390:three_prime_UTR 40.0%
!! CTTCTTTTAGAAGGTGGTGG+AGG + chr5_3:15296545-15296564 Msa0801390:CDS 45.0%
AGTATCTGAGAGAGCAGTGA+GGG - chr5_3:15296630-15296649 None:intergenic 45.0%
TAGTATCTGAGAGAGCAGTG+AGG - chr5_3:15296631-15296650 None:intergenic 45.0%
AATACGGTAGAAGGTAGCAG+CGG - chr5_3:15296702-15296721 None:intergenic 45.0%
GGAAGCTGAAATACGGTAGA+AGG - chr5_3:15296711-15296730 None:intergenic 45.0%
CTACCGTATTTCAGCTTCCA+TGG + chr5_3:15296712-15296731 Msa0801390:CDS 45.0%
CAGCCATGGAAGCTGAAATA+CGG - chr5_3:15296718-15296737 None:intergenic 45.0%
GTTGAAGTTCATGCAGTTGC+AGG - chr5_3:15297258-15297277 None:intergenic 45.0%
TGGGTTGTTTATGTGCAGCT+TGG + chr5_3:15297498-15297517 Msa0801390:intron 45.0%
GGGTTGTTTATGTGCAGCTT+GGG + chr5_3:15297499-15297518 Msa0801390:intron 45.0%
GGTTGTTTATGTGCAGCTTG+GGG + chr5_3:15297500-15297519 Msa0801390:intron 45.0%
GTTGTTTATGTGCAGCTTGG+GGG + chr5_3:15297501-15297520 Msa0801390:intron 45.0%
ATCTGTTGGCGTTTGTGTAG+AGG - chr5_3:15297675-15297694 None:intergenic 45.0%
!! CTTCTTTTAGAAGGTGGTGG+AGG + chr5_3:15296545-15296564 Msa0801390:CDS 45.0%
AGTATCTGAGAGAGCAGTGA+GGG - chr5_3:15296630-15296649 None:intergenic 45.0%
TAGTATCTGAGAGAGCAGTG+AGG - chr5_3:15296631-15296650 None:intergenic 45.0%
AATACGGTAGAAGGTAGCAG+CGG - chr5_3:15296702-15296721 None:intergenic 45.0%
GGAAGCTGAAATACGGTAGA+AGG - chr5_3:15296711-15296730 None:intergenic 45.0%
CTACCGTATTTCAGCTTCCA+TGG + chr5_3:15296712-15296731 Msa0801390:CDS 45.0%
CAGCCATGGAAGCTGAAATA+CGG - chr5_3:15296718-15296737 None:intergenic 45.0%
GTTGAAGTTCATGCAGTTGC+AGG - chr5_3:15297258-15297277 None:intergenic 45.0%
TGGGTTGTTTATGTGCAGCT+TGG + chr5_3:15297498-15297517 Msa0801390:intron 45.0%
GGGTTGTTTATGTGCAGCTT+GGG + chr5_3:15297499-15297518 Msa0801390:intron 45.0%
GGTTGTTTATGTGCAGCTTG+GGG + chr5_3:15297500-15297519 Msa0801390:intron 45.0%
GTTGTTTATGTGCAGCTTGG+GGG + chr5_3:15297501-15297520 Msa0801390:intron 45.0%
ATCTGTTGGCGTTTGTGTAG+AGG - chr5_3:15297675-15297694 None:intergenic 45.0%
!! ATAATTATATATTTATATCA+TGG - chr5_3:15296288-15296307 None:intergenic 5.0%
!!! ATATATAAAATAATTTTAAC+CGG - chr5_3:15296829-15296848 None:intergenic 5.0%
!! TATATATGTAATAAATATAT+AGG - chr5_3:15296852-15296871 None:intergenic 5.0%
!! TTGATATAATAAAAAAAAAT+AGG + chr5_3:15297085-15297104 Msa0801390:intron 5.0%
!! TGATATAAAAAAAAAAAAAT+AGG + chr5_3:15297120-15297139 Msa0801390:intron 5.0%
!!! ATATATCATTAATTTTAAAA+GGG - chr5_3:15297391-15297410 None:intergenic 5.0%
!!! TATATATCATTAATTTTAAA+AGG - chr5_3:15297392-15297411 None:intergenic 5.0%
!! ATAATTATATATTTATATCA+TGG - chr5_3:15296288-15296307 None:intergenic 5.0%
!!! ATATATAAAATAATTTTAAC+CGG - chr5_3:15296829-15296848 None:intergenic 5.0%
!! TATATATGTAATAAATATAT+AGG - chr5_3:15296852-15296871 None:intergenic 5.0%
!! TTGATATAATAAAAAAAAAT+AGG + chr5_3:15297085-15297104 Msa0801390:intron 5.0%
!! TGATATAAAAAAAAAAAAAT+AGG + chr5_3:15297120-15297139 Msa0801390:intron 5.0%
!!! ATATATCATTAATTTTAAAA+GGG - chr5_3:15297391-15297410 None:intergenic 5.0%
!!! TATATATCATTAATTTTAAA+AGG - chr5_3:15297392-15297411 None:intergenic 5.0%
GGGAGGAAAAGATCACACAG+TGG + chr5_3:15296493-15296512 Msa0801390:CDS 50.0%
GATCACACAGTGGTTGAGCT+AGG + chr5_3:15296503-15296522 Msa0801390:CDS 50.0%
CGTATTTCAGCTTCCATGGC+TGG + chr5_3:15296716-15296735 Msa0801390:CDS 50.0%
GGGAGGAAAAGATCACACAG+TGG + chr5_3:15296493-15296512 Msa0801390:CDS 50.0%
GATCACACAGTGGTTGAGCT+AGG + chr5_3:15296503-15296522 Msa0801390:CDS 50.0%
CGTATTTCAGCTTCCATGGC+TGG + chr5_3:15296716-15296735 Msa0801390:CDS 50.0%
ACGTTCAGGTGTTCCAGCCA+TGG - chr5_3:15296732-15296751 None:intergenic 55.0%
ACGTTCAGGTGTTCCAGCCA+TGG - chr5_3:15296732-15296751 None:intergenic 55.0%
GATTCGTCGTCGTCGGAGAC+AGG - chr5_3:15296680-15296699 None:intergenic 60.0%
! AGCAGCGGATTCGTCGTCGT+CGG - chr5_3:15296687-15296706 None:intergenic 60.0%
GATTCGTCGTCGTCGGAGAC+AGG - chr5_3:15296680-15296699 None:intergenic 60.0%
! AGCAGCGGATTCGTCGTCGT+CGG - chr5_3:15296687-15296706 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 15296251 15297785 15296251 ID=Msa0801390;Name=Msa0801390
chr5_3 mRNA 15296251 15297785 15296251 ID=Msa0801390-mRNA-1;Parent=Msa0801390;Name=Msa0801390-mRNA-1;_AED=0.00;_eAED=0.00;_QI=156|0|0.5|1|1|1|2|250|120
chr5_3 exon 15296251 15296749 15296251 ID=Msa0801390-mRNA-1:exon:6373;Parent=Msa0801390-mRNA-1
chr5_3 exon 15297516 15297785 15297516 ID=Msa0801390-mRNA-1:exon:6374;Parent=Msa0801390-mRNA-1
chr5_3 five_prime_UTR 15296251 15296406 15296251 ID=Msa0801390-mRNA-1:five_prime_utr;Parent=Msa0801390-mRNA-1
chr5_3 CDS 15296407 15296749 15296407 ID=Msa0801390-mRNA-1:cds;Parent=Msa0801390-mRNA-1
chr5_3 CDS 15297516 15297535 15297516 ID=Msa0801390-mRNA-1:cds;Parent=Msa0801390-mRNA-1
chr5_3 three_prime_UTR 15297536 15297785 15297536 ID=Msa0801390-mRNA-1:three_prime_utr;Parent=Msa0801390-mRNA-1
Gene Sequence

>Msa0801390

ATGGACATGGAGAATAGTAATAGTGGAAACCAAATAAAAAGTGGTAGCTTTAGGAAGGGTAGCTTTAGAAAGGATAGTTTCAGATTGGGAGGAAAAGATCACACAGTGGTTGAGCTAGGTAATATTGACACACAAAAACTTCTTTTAGAAGGTGGTGGAGGAGAAATAAGAGAGAAACAAAAAACTCTCACAAACTCTCTTTCTGTTAGGCAGATGAAAACCCTCACTGCTCTCTCAGATACTATCTTGCCTTCTATCAATGACTTTGTTCCTGTCTCCGACGACGACGAATCCGCTGCTACCTTCTACCGTATTTCAGCTTCCATGGCTGGAACACCTGAACCTTGGGGGTATAATAAGTGA

Protein sequence

>Msa0801390

MDMENSNSGNQIKSGSFRKGSFRKDSFRLGGKDHTVVELGNIDTQKLLLEGGGGEIREKQKTLTNSLSVRQMKTLTALSDTILPSINDFVPVSDDDESAATFYRISASMAGTPEPWGYNK*