AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0973130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 31 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATGTAACAGTCGCATATT+TGG 0.235041 6_4:+5514824 Msa0973130:intron
CATTTCCACAAGTTCTTTGC+TGG 0.241196 6_4:-5515901 None:intergenic
TAAGATTTGACTGTAGAATT+TGG 0.253750 6_4:+5516488 Msa0973130:three_prime_UTR
AACAGTCGCATATTTGGTTT+GGG 0.300156 6_4:+5514830 Msa0973130:intron
TAACAGTCGCATATTTGGTT+TGG 0.343100 6_4:+5514829 Msa0973130:intron
ACATCATCTATAACAATCTT+AGG 0.371097 6_4:+5513175 Msa0973130:five_prime_UTR
TTATTAGATGCCTAGCTAGA+TGG 0.410366 6_4:-5514882 None:intergenic
AAGATGAGTACTTATATGTT+GGG 0.424011 6_4:-5515008 None:intergenic
ATCTAATAAGAAAGCAAGAT+TGG 0.453124 6_4:+5514896 Msa0973130:five_prime_UTR
GCAGGTGTGATAGAATTCTA+TGG 0.456577 6_4:+5515772 Msa0973130:intron
GAAGATGAGTACTTATATGT+TGG 0.474834 6_4:-5515009 None:intergenic
GTAGAGAAGAGTGCTGAAAC+TGG 0.489823 6_4:-5515858 None:intergenic
AGCAATATCTATTGTGGTGG+TGG 0.490845 6_4:+5515036 Msa0973130:five_prime_UTR
GGTGGCCTTCCAACTAGATC+AGG 0.501700 6_4:+5515054 Msa0973130:five_prime_UTR
CTTCATTAACATTGAAAGTG+AGG 0.516557 6_4:-5516334 None:intergenic
AGAATTCTATGGTATGGTAA+AGG 0.528647 6_4:+5515783 Msa0973130:five_prime_UTR
TGTGATAGAATTCTATGGTA+TGG 0.529314 6_4:+5515777 Msa0973130:five_prime_UTR
AATAAGAAAGCAAGATTGGA+AGG 0.529530 6_4:+5514900 Msa0973130:five_prime_UTR
TTTCTCCTGATCTAGTTGGA+AGG 0.532772 6_4:-5515059 None:intergenic
ATTGCTGTGGAGGCTGAAGA+TGG 0.538071 6_4:+5516519 Msa0973130:three_prime_UTR
TTTGGTAAATACAATTGCTG+TGG 0.567914 6_4:+5516506 Msa0973130:three_prime_UTR
TCCACTAGCAATATCTATTG+TGG 0.577164 6_4:+5515030 Msa0973130:five_prime_UTR
GGTAAATACAATTGCTGTGG+AGG 0.577701 6_4:+5516509 Msa0973130:three_prime_UTR
ACTTGAAAGACCATCTAGCT+AGG 0.579325 6_4:+5514872 Msa0973130:five_prime_UTR
ACAGTCGCATATTTGGTTTG+GGG 0.615214 6_4:+5514831 Msa0973130:intron
ATGTTAATGAAGAATGTACA+AGG 0.625047 6_4:+5516345 Msa0973130:five_prime_UTR
AGATGAGTACTTATATGTTG+GGG 0.634547 6_4:-5515007 None:intergenic
AAGTGGTTACTATACCATGC+TGG 0.634633 6_4:-5515093 None:intergenic
ACTAGCAATATCTATTGTGG+TGG 0.637512 6_4:+5515033 Msa0973130:five_prime_UTR
ACCACAATAGATATTGCTAG+TGG 0.647730 6_4:-5515031 None:intergenic
AAAAGCAAAGAACACCAGCA+TGG 0.661082 6_4:+5515079 Msa0973130:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTTTTTATAATATTA+TGG - chr6_4:5514322-5514341 None:intergenic 0.0%
!! ACAACATTAATATTAATATA+AGG - chr6_4:5513221-5513240 None:intergenic 10.0%
!!! AAAAACTAAATTTTAGAAAT+GGG - chr6_4:5513411-5513430 None:intergenic 10.0%
!!! ATTGTTTTTTTTTTTTATGA+AGG + chr6_4:5513784-5513803 Msa0973130:intron 10.0%
!!! TTGTTTTTTTTTTTTATGAA+GGG + chr6_4:5513785-5513804 Msa0973130:intron 10.0%
!!! AATATTTTTAGGTTAAAAAA+TGG + chr6_4:5513913-5513932 Msa0973130:intron 10.0%
!!! ATATTTTTAGGTTAAAAAAT+GGG + chr6_4:5513914-5513933 Msa0973130:intron 10.0%
!!! ATGTTTAAAATAATTTTTCA+TGG + chr6_4:5515504-5515523 Msa0973130:intron 10.0%
!! TTAATATTATTGAAATTAGA+TGG - chr6_4:5515612-5515631 None:intergenic 10.0%
!!! TTTAGATTTAAATTTTAGAA+AGG + chr6_4:5516464-5516483 Msa0973130:three_prime_UTR 10.0%
!!! CAAAAACTAAATTTTAGAAA+TGG - chr6_4:5513412-5513431 None:intergenic 15.0%
!! CTATTTCACTTATATTAAAA+TGG + chr6_4:5513432-5513451 Msa0973130:intron 15.0%
!!! TTGTTATTGTTTTTTACAAA+GGG - chr6_4:5513506-5513525 None:intergenic 15.0%
!!! TTTGTTATTGTTTTTTACAA+AGG - chr6_4:5513507-5513526 None:intergenic 15.0%
!!! TAACAACCAAATTTTAAAAT+GGG + chr6_4:5513954-5513973 Msa0973130:intron 15.0%
!! ATCAACTTTGTAAAATTAAT+TGG - chr6_4:5513982-5514001 None:intergenic 15.0%
!!! TTTTTCATACGTAAAAATTA+GGG - chr6_4:5514531-5514550 None:intergenic 15.0%
!!! ATTTTTCATACGTAAAAATT+AGG - chr6_4:5514532-5514551 None:intergenic 15.0%
!!! CTTTTTTCTTTGTTAATTAT+AGG + chr6_4:5515123-5515142 Msa0973130:intron 15.0%
!! AAAATATCAAGCTTAAAATA+TGG - chr6_4:5515257-5515276 None:intergenic 15.0%
!! TTAATATAGAAATTATGCAT+TGG + chr6_4:5516028-5516047 Msa0973130:intron 15.0%
!! TTAAATCTAAAAAAGAATGT+TGG - chr6_4:5516455-5516474 None:intergenic 15.0%
!!! ATCAAGTTGAAGAAATTTTT+AGG + chr6_4:5513126-5513145 Msa0973130:five_prime_UTR 20.0%
!!! TTTTTCTTGTTTATGATGAT+TGG + chr6_4:5513267-5513286 Msa0973130:intron 20.0%
!!! TTTCGAAGTGAATTTTTAAT+AGG - chr6_4:5513859-5513878 None:intergenic 20.0%
!!! CTAACAACCAAATTTTAAAA+TGG + chr6_4:5513953-5513972 Msa0973130:intron 20.0%
!!! AACAACCAAATTTTAAAATG+GGG + chr6_4:5513955-5513974 Msa0973130:intron 20.0%
!!! ATTAATTTTAAGAACGAACT+AGG - chr6_4:5514363-5514382 None:intergenic 20.0%
!! ATTAATAGTAAACATGTCTA+AGG - chr6_4:5514386-5514405 None:intergenic 20.0%
!! AAATGTTATATGGTAGAATT+TGG - chr6_4:5514451-5514470 None:intergenic 20.0%
!!! TTTTAGACAGAAATGTTATA+TGG - chr6_4:5514461-5514480 None:intergenic 20.0%
!!! ATAACATTTCTGTCTAAAAT+TGG + chr6_4:5514462-5514481 Msa0973130:intron 20.0%
!!! TAAAATTGGTTTTAATGGTA+AGG + chr6_4:5514476-5514495 Msa0973130:intron 20.0%
!!! AAAATTGGTTTTAATGGTAA+GGG + chr6_4:5514477-5514496 Msa0973130:intron 20.0%
!!! TTTTTACGTATGAAAAATTC+CGG + chr6_4:5514534-5514553 Msa0973130:intron 20.0%
!! AAAGTCTATTTCATATTTGT+AGG + chr6_4:5514648-5514667 Msa0973130:intron 20.0%
!!! GTTAACAACTGTAATTTTTT+TGG + chr6_4:5515417-5515436 Msa0973130:intron 20.0%
!!! GTAAAACATTTTTACATTGT+TGG - chr6_4:5515585-5515604 None:intergenic 20.0%
!!! ATTATTGTAGAGTTTTTTTG+AGG + chr6_4:5515686-5515705 Msa0973130:intron 20.0%
!!! TTATTGTAGAGTTTTTTTGA+GGG + chr6_4:5515687-5515706 Msa0973130:intron 20.0%
!! TGTTGTGTATATTAAGAAAA+TGG + chr6_4:5515965-5515984 Msa0973130:intron 20.0%
!! GTTGTGTATATTAAGAAAAT+GGG + chr6_4:5515966-5515985 Msa0973130:intron 20.0%
!! TAGAAAAATGACAAAAGAAT+TGG + chr6_4:5516418-5516437 Msa0973130:CDS 20.0%
!!! AAAAAAGAATGTTGGATTTT+AGG - chr6_4:5516447-5516466 None:intergenic 20.0%
!! TTGTTATAGATGATGTTTTG+TGG - chr6_4:5513171-5513190 None:intergenic 25.0%
! ACATCATCTATAACAATCTT+AGG + chr6_4:5513175-5513194 Msa0973130:five_prime_UTR 25.0%
! TAAACAAGAAAAAACACAGA+GGG - chr6_4:5513260-5513279 None:intergenic 25.0%
! ATAAACAAGAAAAAACACAG+AGG - chr6_4:5513261-5513280 None:intergenic 25.0%
!!! AACTGCAACAAGTTTTTTTA+CGG - chr6_4:5513352-5513371 None:intergenic 25.0%
!!! AAAAAAACTTGTTGCAGTTT+TGG + chr6_4:5513353-5513372 Msa0973130:intron 25.0%
! ATCGTAAACTAGTGAAAATA+TGG - chr6_4:5513382-5513401 None:intergenic 25.0%
!!! TTTTCACTAGTTTACGATAT+TGG + chr6_4:5513384-5513403 Msa0973130:intron 25.0%
! ATAAAGTGATCGATCAAAAT+TGG - chr6_4:5513574-5513593 None:intergenic 25.0%
!! GATCGATCACTTTATTTATT+AGG + chr6_4:5513579-5513598 Msa0973130:intron 25.0%
!! ATTAGGCTTAATTGCAATTT+TGG + chr6_4:5513596-5513615 Msa0973130:intron 25.0%
!! CTTGTCAAGTCAATATTTTT+AGG + chr6_4:5513902-5513921 Msa0973130:intron 25.0%
!!! TTTCAAGTTTAGTCTTTCTT+AGG + chr6_4:5514063-5514082 Msa0973130:intron 25.0%
! CTTTAGCATGAAACATTATT+TGG - chr6_4:5514279-5514298 None:intergenic 25.0%
! CAAATAATGTTTCATGCTAA+AGG + chr6_4:5514277-5514296 Msa0973130:intron 25.0%
!!! CTGTCTAAAATTGGTTTTAA+TGG + chr6_4:5514471-5514490 Msa0973130:intron 25.0%
!! AATTTTTATCGATGATCTGT+TGG - chr6_4:5514588-5514607 None:intergenic 25.0%
! ATCTAATAAGAAAGCAAGAT+TGG + chr6_4:5514896-5514915 Msa0973130:five_prime_UTR 25.0%
! AAGATGAGTACTTATATGTT+GGG - chr6_4:5515011-5515030 None:intergenic 25.0%
!! AAGAAAAAAGTATAAGCAAG+TGG - chr6_4:5515113-5515132 None:intergenic 25.0%
! TTAATTATAGGCCATGAATT+AGG + chr6_4:5515135-5515154 Msa0973130:intron 25.0%
! TAATTATAGGCCATGAATTA+GGG + chr6_4:5515136-5515155 Msa0973130:intron 25.0%
! TTCATGGAATTAATTATGTG+TGG + chr6_4:5515520-5515539 Msa0973130:intron 25.0%
! AGAAATTATGCATTGGAAAT+TGG + chr6_4:5516035-5516054 Msa0973130:intron 25.0%
!! CATTGTCCTTAATTTTCTTA+GGG - chr6_4:5516169-5516188 None:intergenic 25.0%
!! TCATTGTCCTTAATTTTCTT+AGG - chr6_4:5516170-5516189 None:intergenic 25.0%
!!! TTCTTCAAGTTTTTCGAAAT+TGG + chr6_4:5516243-5516262 Msa0973130:intron 25.0%
!! TTTTCGAAATTGGTATTCTA+AGG + chr6_4:5516253-5516272 Msa0973130:intron 25.0%
! ATGTTTCATGTTATTATTGC+AGG + chr6_4:5516278-5516297 Msa0973130:intron 25.0%
! TGTTTCATGTTATTATTGCA+GGG + chr6_4:5516279-5516298 Msa0973130:intron 25.0%
! ATGTTAATGAAGAATGTACA+AGG + chr6_4:5516345-5516364 Msa0973130:five_prime_UTR 25.0%
! TAAGATTTGACTGTAGAATT+TGG + chr6_4:5516488-5516507 Msa0973130:three_prime_UTR 25.0%
TGCAAAAGGAGATAAACTTA+GGG - chr6_4:5513536-5513555 None:intergenic 30.0%
! TGTGACTTCTATTTTCTTAG+GGG - chr6_4:5513654-5513673 None:intergenic 30.0%
! GTGTGACTTCTATTTTCTTA+GGG - chr6_4:5513655-5513674 None:intergenic 30.0%
GTATCACAATCTTGTGATAT+TGG - chr6_4:5513811-5513830 None:intergenic 30.0%
ATCACAAGATTGTGATACTT+AGG + chr6_4:5513813-5513832 Msa0973130:intron 30.0%
! TTTAGGTTAAAAAATGGGAG+TGG + chr6_4:5513919-5513938 Msa0973130:intron 30.0%
TTAGGTTAAAAAATGGGAGT+GGG + chr6_4:5513920-5513939 Msa0973130:intron 30.0%
!!! TTGGTCCCCATTTTAAAATT+TGG - chr6_4:5513963-5513982 None:intergenic 30.0%
! ATATCTAATTTGCATGGACT+TGG - chr6_4:5514123-5514142 None:intergenic 30.0%
AAGTCCATGCAAATTAGATA+TGG + chr6_4:5514122-5514141 Msa0973130:intron 30.0%
! CAAACCATATCTAATTTGCA+TGG - chr6_4:5514129-5514148 None:intergenic 30.0%
! AAATGTGTTACTCAATATGG+GGG - chr6_4:5514189-5514208 None:intergenic 30.0%
! GAAATGTGTTACTCAATATG+GGG - chr6_4:5514190-5514209 None:intergenic 30.0%
! CGAAATGTGTTACTCAATAT+GGG - chr6_4:5514191-5514210 None:intergenic 30.0%
CCATATTGAGTAACACATTT+CGG + chr6_4:5514189-5514208 Msa0973130:intron 30.0%
CATATTGAGTAACACATTTC+GGG + chr6_4:5514190-5514209 Msa0973130:intron 30.0%
TATGAAAAATTCCGGTTGAA+AGG + chr6_4:5514542-5514561 Msa0973130:intron 30.0%
TTATGTAACAGTCGCATATT+TGG + chr6_4:5514824-5514843 Msa0973130:intron 30.0%
AATAAGAAAGCAAGATTGGA+AGG + chr6_4:5514900-5514919 Msa0973130:five_prime_UTR 30.0%
AGATGAGTACTTATATGTTG+GGG - chr6_4:5515010-5515029 None:intergenic 30.0%
GAAGATGAGTACTTATATGT+TGG - chr6_4:5515012-5515031 None:intergenic 30.0%
CAATTCAAATCCCTAATTCA+TGG - chr6_4:5515149-5515168 None:intergenic 30.0%
TTAGGGATTTGAATTGTCTA+TGG + chr6_4:5515153-5515172 Msa0973130:intron 30.0%
!! TCAGACGGTCTATATTTTAA+CGG + chr6_4:5515230-5515249 Msa0973130:intron 30.0%
AATCCAAATCTATGTAGTAG+AGG + chr6_4:5515379-5515398 Msa0973130:intron 30.0%
ATCCAAATCTATGTAGTAGA+GGG + chr6_4:5515380-5515399 Msa0973130:intron 30.0%
AACTAACAACATTCCTTTGA+TGG + chr6_4:5515748-5515767 Msa0973130:intron 30.0%
ACTAACAACATTCCTTTGAT+GGG + chr6_4:5515749-5515768 Msa0973130:intron 30.0%
TGTGATAGAATTCTATGGTA+TGG + chr6_4:5515777-5515796 Msa0973130:five_prime_UTR 30.0%
AGAATTCTATGGTATGGTAA+AGG + chr6_4:5515783-5515802 Msa0973130:five_prime_UTR 30.0%
TGATTGGATTGCAAAATTGT+TGG - chr6_4:5515939-5515958 None:intergenic 30.0%
ATACACAACACTTACATGAT+TGG - chr6_4:5515955-5515974 None:intergenic 30.0%
ACATTCTTAACTATTGCCTT+AGG + chr6_4:5516127-5516146 Msa0973130:intron 30.0%
! TTTTGCTAACTAGTATCCTA+AGG - chr6_4:5516146-5516165 None:intergenic 30.0%
GCAAAACCCTAAGAAAATTA+AGG + chr6_4:5516160-5516179 Msa0973130:intron 30.0%
GTTTCATGTTATTATTGCAG+GGG + chr6_4:5516280-5516299 Msa0973130:intron 30.0%
TTTCATGTTATTATTGCAGG+GGG + chr6_4:5516281-5516300 Msa0973130:intron 30.0%
CTTCATTAACATTGAAAGTG+AGG - chr6_4:5516337-5516356 None:intergenic 30.0%
TTTGGTAAATACAATTGCTG+TGG + chr6_4:5516506-5516525 Msa0973130:three_prime_UTR 30.0%
! TTAGGAGAACATCTTTTCCT+AGG + chr6_4:5513144-5513163 Msa0973130:five_prime_UTR 35.0%
ATCGCAAAATTGTGGTACTT+AGG - chr6_4:5513478-5513497 None:intergenic 35.0%
CAAAAGGAGATAAACTTAGG+GGG - chr6_4:5513534-5513553 None:intergenic 35.0%
GCAAAAGGAGATAAACTTAG+GGG - chr6_4:5513535-5513554 None:intergenic 35.0%
GTGCAAAAGGAGATAAACTT+AGG - chr6_4:5513537-5513556 None:intergenic 35.0%
CGCAAGATTGTGATACTTAA+GGG - chr6_4:5513623-5513642 None:intergenic 35.0%
TCGCAAGATTGTGATACTTA+AGG - chr6_4:5513624-5513643 None:intergenic 35.0%
! GTATCACAATCTTGCGATTT+TGG + chr6_4:5513627-5513646 Msa0973130:intron 35.0%
! GTGACTTCTATTTTCTTAGG+GGG - chr6_4:5513653-5513672 None:intergenic 35.0%
! CGTGTGACTTCTATTTTCTT+AGG - chr6_4:5513656-5513675 None:intergenic 35.0%
AAGAAAATAGAAGTCACACG+TGG + chr6_4:5513656-5513675 Msa0973130:intron 35.0%
!! GTGTTAAGTATGCATTGACT+TGG + chr6_4:5513701-5513720 Msa0973130:intron 35.0%
!! TGCATTGACTTGGTCAAAAT+TGG + chr6_4:5513711-5513730 Msa0973130:intron 35.0%
! TTTACTCCCTTTTGCACTTT+TGG - chr6_4:5513745-5513764 None:intergenic 35.0%
CAAAAGGGAGTAAACTTAGA+GGG + chr6_4:5513751-5513770 Msa0973130:intron 35.0%
TAAAAAATGGGAGTGGGAAT+TGG + chr6_4:5513926-5513945 Msa0973130:intron 35.0%
AATTAACTGCACTGCTATGT+TGG - chr6_4:5514037-5514056 None:intergenic 35.0%
ACATAGCAGTGCAGTTAATT+CGG + chr6_4:5514037-5514056 Msa0973130:intron 35.0%
! TTTAGTCTTTCTTAGGTAGC+AGG + chr6_4:5514070-5514089 Msa0973130:intron 35.0%
AATTTGCATGGACTTGGATT+TGG - chr6_4:5514117-5514136 None:intergenic 35.0%
! AATGTGTTACTCAATATGGG+GGG - chr6_4:5514188-5514207 None:intergenic 35.0%
! CCGAAATGTGTTACTCAATA+TGG - chr6_4:5514192-5514211 None:intergenic 35.0%
! TTATACTAGAGTACTAGGCT+AGG - chr6_4:5514254-5514273 None:intergenic 35.0%
! TGGACTTATACTAGAGTACT+AGG - chr6_4:5514259-5514278 None:intergenic 35.0%
GATGATCTGTTGGACATATA+AGG - chr6_4:5514578-5514597 None:intergenic 35.0%
TAACAGTCGCATATTTGGTT+TGG + chr6_4:5514829-5514848 Msa0973130:intron 35.0%
! AACAGTCGCATATTTGGTTT+GGG + chr6_4:5514830-5514849 Msa0973130:intron 35.0%
TTATTAGATGCCTAGCTAGA+TGG - chr6_4:5514885-5514904 None:intergenic 35.0%
CTTCAAAAAGAGTTAGCAGA+AGG + chr6_4:5514943-5514962 Msa0973130:five_prime_UTR 35.0%
TCCACTAGCAATATCTATTG+TGG + chr6_4:5515030-5515049 Msa0973130:five_prime_UTR 35.0%
ACCACAATAGATATTGCTAG+TGG - chr6_4:5515034-5515053 None:intergenic 35.0%
ACTAGCAATATCTATTGTGG+TGG + chr6_4:5515033-5515052 Msa0973130:five_prime_UTR 35.0%
TACCCTCTACTACATAGATT+TGG - chr6_4:5515385-5515404 None:intergenic 35.0%
CTAACAACATTCCTTTGATG+GGG + chr6_4:5515750-5515769 Msa0973130:intron 35.0%
TGGATTGCAAAATTGTTGGA+GGG - chr6_4:5515935-5515954 None:intergenic 35.0%
TTGGATTGCAAAATTGTTGG+AGG - chr6_4:5515936-5515955 None:intergenic 35.0%
CTTCTTAATTAGTGCCCTTA+GGG - chr6_4:5516007-5516026 None:intergenic 35.0%
TCTTCTTAATTAGTGCCCTT+AGG - chr6_4:5516008-5516027 None:intergenic 35.0%
CATTGGAAATTGGTGAAAAG+TGG + chr6_4:5516045-5516064 Msa0973130:intron 35.0%
! AGATGATGTTTTGTGGTCCT+AGG - chr6_4:5513164-5513183 None:intergenic 40.0%
AGGTAGAGACAACTTACTCA+TGG - chr6_4:5513201-5513220 None:intergenic 40.0%
GCAAAATTGTGGTACTTAGG+AGG - chr6_4:5513475-5513494 None:intergenic 40.0%
GGGTCAAAATCGCAAAATTG+TGG - chr6_4:5513486-5513505 None:intergenic 40.0%
! TCGATCAAAATTGGTCTGGA+GGG - chr6_4:5513565-5513584 None:intergenic 40.0%
! ATCGATCAAAATTGGTCTGG+AGG - chr6_4:5513566-5513585 None:intergenic 40.0%
GTGATCGATCAAAATTGGTC+TGG - chr6_4:5513569-5513588 None:intergenic 40.0%
CACCTCACTTTAAGTGATGT+GGG + chr6_4:5513679-5513698 Msa0973130:intron 40.0%
!! TGACTTGGTCAAAATTGGTC+TGG + chr6_4:5513716-5513735 Msa0973130:intron 40.0%
! GACTTGGTCAAAATTGGTCT+GGG + chr6_4:5513717-5513736 Msa0973130:intron 40.0%
! ACTTGGTCAAAATTGGTCTG+GGG + chr6_4:5513718-5513737 Msa0973130:intron 40.0%
GCAAAAGGGAGTAAACTTAG+AGG + chr6_4:5513750-5513769 Msa0973130:intron 40.0%
! TTTTAATGGTAAGGGTCTCG+AGG + chr6_4:5514485-5514504 Msa0973130:intron 40.0%
!! ACAGTCGCATATTTGGTTTG+GGG + chr6_4:5514831-5514850 Msa0973130:intron 40.0%
ACTTGAAAGACCATCTAGCT+AGG + chr6_4:5514872-5514891 Msa0973130:five_prime_UTR 40.0%
CAAAAAGAGTTAGCAGAAGG+TGG + chr6_4:5514946-5514965 Msa0973130:five_prime_UTR 40.0%
!! GTTTTTGAGGGTTGGAAAGA+AGG + chr6_4:5514970-5514989 Msa0973130:five_prime_UTR 40.0%
AGCAATATCTATTGTGGTGG+TGG + chr6_4:5515036-5515055 Msa0973130:five_prime_UTR 40.0%
TTTCTCCTGATCTAGTTGGA+AGG - chr6_4:5515062-5515081 None:intergenic 40.0%
! TGCTTTTCTCCTGATCTAGT+TGG - chr6_4:5515066-5515085 None:intergenic 40.0%
AAAAGCAAAGAACACCAGCA+TGG + chr6_4:5515079-5515098 Msa0973130:five_prime_UTR 40.0%
AAGTGGTTACTATACCATGC+TGG - chr6_4:5515096-5515115 None:intergenic 40.0%
CCAGTTGGATCAAAATCAGA+CGG + chr6_4:5515215-5515234 Msa0973130:intron 40.0%
!! TCAGATAGCCAATGTTTTGG+TGG - chr6_4:5515335-5515354 None:intergenic 40.0%
! CGTTCAGATAGCCAATGTTT+TGG - chr6_4:5515338-5515357 None:intergenic 40.0%
! AAACATTGGCTATCTGAACG+TGG + chr6_4:5515338-5515357 Msa0973130:intron 40.0%
! AACATTGGCTATCTGAACGT+GGG + chr6_4:5515339-5515358 Msa0973130:intron 40.0%
GCAGGTGTGATAGAATTCTA+TGG + chr6_4:5515772-5515791 Msa0973130:intron 40.0%
ATCATCCAGCAAAGAACTTG+TGG + chr6_4:5515896-5515915 Msa0973130:intron 40.0%
CATTTCCACAAGTTCTTTGC+TGG - chr6_4:5515904-5515923 None:intergenic 40.0%
AAATGCTAACTAGTGCCCTA+AGG + chr6_4:5515989-5516008 Msa0973130:intron 40.0%
AATGCTAACTAGTGCCCTAA+GGG + chr6_4:5515990-5516009 Msa0973130:intron 40.0%
GGTAAATACAATTGCTGTGG+AGG + chr6_4:5516509-5516528 Msa0973130:three_prime_UTR 40.0%
GCACCTCACTTTAAGTGATG+TGG + chr6_4:5513678-5513697 Msa0973130:intron 45.0%
CACCCACATCACTTAAAGTG+AGG - chr6_4:5513684-5513703 None:intergenic 45.0%
! CTTGGTCAAAATTGGTCTGG+GGG + chr6_4:5513719-5513738 Msa0973130:intron 45.0%
AGGGAGTAAACTTAGAGGGT+CGG + chr6_4:5513755-5513774 Msa0973130:intron 45.0%
!! AACACATTTCGGGTTTCTGC+TGG + chr6_4:5514200-5514219 Msa0973130:intron 45.0%
! AGCAGAAGGTGGAGTTTTTG+AGG + chr6_4:5514957-5514976 Msa0973130:five_prime_UTR 45.0%
! GCAGAAGGTGGAGTTTTTGA+GGG + chr6_4:5514958-5514977 Msa0973130:five_prime_UTR 45.0%
!! AAGGTGGAGTTTTTGAGGGT+TGG + chr6_4:5514962-5514981 Msa0973130:five_prime_UTR 45.0%
! GTTTGCACTTTTGTGCCAGT+TGG + chr6_4:5515200-5515219 Msa0973130:intron 45.0%
!! CCGTCTGATTTTGATCCAAC+TGG - chr6_4:5515218-5515237 None:intergenic 45.0%
!! TTCTGAGGCCACCAAAACAT+TGG + chr6_4:5515324-5515343 Msa0973130:intron 45.0%
ACGTGGGAATTTGTGACTAC+AGG + chr6_4:5515355-5515374 Msa0973130:intron 45.0%
!! GTAGAGAAGAGTGCTGAAAC+TGG - chr6_4:5515861-5515880 None:intergenic 45.0%
!! AATATATCATAAAATATAAT+AGG + chr6_4:5515630-5515649 Msa0973130:intron 5.0%
CTGGAGGGCTAAAGTGCAAA+AGG - chr6_4:5513550-5513569 None:intergenic 50.0%
! TGGGGGCCAAAAGTGCAAAA+GGG + chr6_4:5513736-5513755 Msa0973130:intron 50.0%
GCAAGTTCTCGCCTTTCAAC+CGG - chr6_4:5514556-5514575 None:intergenic 50.0%
CACCCTCTAACATCGTTCTG+AGG + chr6_4:5515309-5515328 Msa0973130:intron 50.0%
GGCCTCAGAACGATGTTAGA+GGG - chr6_4:5515314-5515333 None:intergenic 50.0%
TGGCCTCAGAACGATGTTAG+AGG - chr6_4:5515315-5515334 None:intergenic 50.0%
CAACATTCCTTTGATGGGGC+AGG + chr6_4:5515754-5515773 Msa0973130:intron 50.0%
TATCACACCTGCCCCATCAA+AGG - chr6_4:5515764-5515783 None:intergenic 50.0%
TTATTGCAGGGGGTGAGCAA+AGG + chr6_4:5516291-5516310 Msa0973130:intron 50.0%
ATTGCTGTGGAGGCTGAAGA+TGG + chr6_4:5516519-5516538 Msa0973130:three_prime_UTR 50.0%
! CTGGGGGCCAAAAGTGCAAA+AGG + chr6_4:5513735-5513754 Msa0973130:intron 55.0%
GGTGGCCTTCCAACTAGATC+AGG + chr6_4:5515054-5515073 Msa0973130:five_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 5513109 5516571 5513109 ID=Msa0973130;Name=Msa0973130
chr6_4 mRNA 5513109 5516571 5513109 ID=Msa0973130-mRNA-1;Parent=Msa0973130;Name=Msa0973130-mRNA-1;_AED=0.03;_eAED=0.03;_QI=610|0.66|0.75|1|0.66|0.75|4|123|12
chr6_4 exon 5513109 5513203 5513109 ID=Msa0973130-mRNA-1:exon:2355;Parent=Msa0973130-mRNA-1
chr6_4 exon 5514835 5515100 5514835 ID=Msa0973130-mRNA-1:exon:2356;Parent=Msa0973130-mRNA-1
chr6_4 exon 5515776 5515914 5515776 ID=Msa0973130-mRNA-1:exon:2357;Parent=Msa0973130-mRNA-1
chr6_4 exon 5516300 5516571 5516300 ID=Msa0973130-mRNA-1:exon:2358;Parent=Msa0973130-mRNA-1
chr6_4 five_prime_UTR 5513109 5513203 5513109 ID=Msa0973130-mRNA-1:five_prime_utr;Parent=Msa0973130-mRNA-1
chr6_4 five_prime_UTR 5514835 5515100 5514835 ID=Msa0973130-mRNA-1:five_prime_utr;Parent=Msa0973130-mRNA-1
chr6_4 five_prime_UTR 5515776 5515914 5515776 ID=Msa0973130-mRNA-1:five_prime_utr;Parent=Msa0973130-mRNA-1
chr6_4 five_prime_UTR 5516300 5516409 5516300 ID=Msa0973130-mRNA-1:five_prime_utr;Parent=Msa0973130-mRNA-1
chr6_4 CDS 5516410 5516448 5516410 ID=Msa0973130-mRNA-1:cds;Parent=Msa0973130-mRNA-1
chr6_4 three_prime_UTR 5516449 5516571 5516449 ID=Msa0973130-mRNA-1:three_prime_utr;Parent=Msa0973130-mRNA-1
Gene Sequence

>Msa0973130

ATGATCATTAGAAAAATGACAAAAGAATTGGTTTCCTAA

Protein sequence

>Msa0973130

MIIRKMTKELVS*