AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1122510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1122510 MtrunA17_Chr7g0255551 88.454 537 24 2 1 510 1 526 0.0 953
Msa1122510 MtrunA17_Chr8g0377771 49.060 532 219 5 15 510 32 547 8.03e-174 501
Msa1122510 MtrunA17_Chr7g0234801 49.425 522 222 6 15 505 28 538 3.12e-167 484
Msa1122510 MtrunA17_Chr8g0339141 50.000 512 210 6 33 510 52 551 5.26e-165 479
Msa1122510 MtrunA17_Chr8g0339141 30.573 157 100 2 21 172 156 308 1.15e-16 82.8
Msa1122510 MtrunA17_Chr8g0352971 44.868 341 139 9 40 345 18 344 1.32e-77 249
Msa1122510 MtrunA17_Chr8g0352971 30.460 174 111 3 21 188 120 289 2.19e-19 90.5
Msa1122510 MtrunA17_Chr1g0152361 42.308 312 163 4 201 507 74 373 1.71e-76 245
Msa1122510 MtrunA17_Chr1g0152361 30.075 133 86 2 44 171 4 134 9.49e-13 69.7
Msa1122510 MtrunA17_Chr4g0027201 31.008 516 308 12 15 493 29 533 1.82e-53 191
Msa1122510 MtrunA17_Chr8g0338001 37.069 348 167 10 119 429 43 375 5.50e-53 184
Msa1122510 MtrunA17_Chr8g0338001 30.380 158 99 4 21 172 61 213 2.55e-12 68.6
Msa1122510 MtrunA17_Chr8g0338181 43.030 165 76 3 232 389 2 155 2.84e-29 112
Msa1122510 MtrunA17_Chr8g0336421 45.033 151 66 3 201 345 36 175 1.37e-27 115
Msa1122510 MtrunA17_Chr8g0336421 29.365 126 78 3 82 196 2 127 8.70e-11 64.3
Msa1122510 MtrunA17_Chr8g0338631 43.077 130 70 2 303 429 1 129 7.30e-26 102
Msa1122510 MtrunA17_Chr1g0152351 39.726 146 83 2 19 164 61 201 8.18e-26 104
Msa1122510 MtrunA17_Chr1g0152351 33.824 136 69 5 130 244 56 191 7.53e-12 64.7
Msa1122510 MtrunA17_Chr8g0339171 44.762 105 50 2 27 124 32 135 1.53e-23 96.7
Msa1122510 MtrunA17_Chr4g0019501 30.035 283 181 6 227 502 55 327 4.90e-22 97.8
Msa1122510 MtrunA17_Chr5g0435521 39.640 111 64 2 18 125 9 119 7.17e-20 87.4
Msa1122510 MtrunA17_Chr8g0339161 27.508 309 154 8 86 389 1 244 3.51e-19 87.4
Msa1122510 MtrunA17_Chr4g0052911 38.298 94 47 2 42 124 144 237 3.04e-16 78.2
Msa1122510 MtrunA17_Chr2g0279511 44.037 109 55 4 21 124 2 109 3.77e-16 74.7
Msa1122510 MtrunA17_Chr8g0338661 42.391 92 50 1 301 389 1 92 1.22e-14 69.7
Msa1122510 MtrunA17_Chr8g0374621 33.775 151 96 3 358 505 209 358 4.84e-14 73.6
Msa1122510 MtrunA17_Chr8g0338061 42.391 92 50 1 301 389 1 92 2.07e-13 66.2
Msa1122510 MtrunA17_Chr7g0237741 36.585 123 70 2 355 477 89 203 2.59e-12 67.4
Msa1122510 MtrunA17_Chr2g0323971 35.772 123 71 2 355 477 92 206 4.82e-12 66.6
Msa1122510 MtrunA17_Chr4g0014351 36.471 85 52 2 41 124 783 866 1.55e-11 67.0
Msa1122510 MtrunA17_Chr5g0396231 39.535 86 47 2 41 124 415 497 1.66e-11 66.6
Msa1122510 MtrunA17_Chr4g0045321 27.429 175 113 4 336 505 194 359 2.88e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1122510 AT5G48570.1 49.905 529 218 6 16 509 42 558 4.54e-175 505
Msa1122510 AT3G25230.1 47.801 523 230 4 20 510 38 549 2.87e-165 479
Msa1122510 AT3G25230.2 47.893 522 229 4 20 509 38 548 1.35e-164 478
Msa1122510 AT3G54010.1 30.019 523 304 14 15 493 27 531 2.08e-48 177
Msa1122510 AT3G54010.2 30.283 459 262 13 75 493 1 441 3.90e-43 161
Msa1122510 AT1G58450.1 46.795 156 82 1 352 507 1 155 1.16e-36 133
Msa1122510 AT5G48580.1 48.837 86 44 0 40 125 53 138 5.97e-24 98.6
Msa1122510 AT3G21640.1 29.514 288 180 7 225 502 48 322 1.85e-22 99.4
Msa1122510 AT3G25220.1 44.186 86 48 0 40 125 53 138 5.62e-21 90.1
Msa1122510 AT3G55520.2 40.541 111 63 2 18 125 9 119 1.10e-17 81.6
Msa1122510 AT3G55520.3 40.541 111 63 2 18 125 9 119 1.10e-17 81.6
Msa1122510 AT3G55520.1 40.541 111 63 2 18 125 9 119 1.10e-17 81.6
Msa1122510 AT5G45680.1 41.489 94 44 2 42 124 112 205 1.47e-17 81.6
Msa1122510 AT5G64350.1 41.284 109 58 4 21 124 2 109 3.51e-14 69.3
Msa1122510 AT4G25340.1 45.238 84 44 2 42 124 392 474 4.35e-14 75.1
Msa1122510 AT2G43560.2 36.782 87 51 2 41 123 70 156 3.04e-11 62.4
Msa1122510 AT2G15790.1 29.747 158 98 4 340 484 181 338 3.63e-11 65.1
Msa1122510 AT5G05420.1 38.824 85 49 3 41 124 58 140 6.26e-11 60.8

Find 93 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAAAGAGCCTTCACATTTA+AGG 0.117188 7_3:-72963797 None:intergenic
TGCTGCTTGTCAACTTAAAT+TGG 0.168671 7_3:+72963486 Msa1122510:CDS
AATTGATTGTACCTGTTATT+AGG 0.195670 7_3:-72963898 None:intergenic
TGTTTCCTTGCAAATTATTA+TGG 0.222798 7_3:-72962989 None:intergenic
TCCTTAGCATATGGGGAAAA+AGG 0.224851 7_3:+72961253 Msa1122510:CDS
TTTAAAGGACAAGTTGAAAA+TGG 0.232604 7_3:+72960910 Msa1122510:CDS
CATAGAATCAACCTCAAAAT+TGG 0.243569 7_3:+72964416 Msa1122510:three_prime_UTR
AGCACTTCATCAAGCTCTTT+TGG 0.244910 7_3:-72961412 None:intergenic
CATTTAAGGGATCTTGTTCT+AGG 0.256787 7_3:-72963783 None:intergenic
AAGAAAGGATAAGCCGTTAT+TGG 0.257717 7_3:-72960593 None:intergenic
TCCTCCTTTCATTTCAAATT+AGG 0.262521 7_3:+72960964 Msa1122510:CDS
GTGAACAGGAGAAGCCATTT+TGG 0.264607 7_3:+72963167 Msa1122510:intron
TATTCAAGGCTCAAAATTTC+AGG 0.271618 7_3:+72963251 Msa1122510:CDS
AGCAGCATTGTTCAAATTAC+AGG 0.279640 7_3:-72963470 None:intergenic
TATGAAGCAAGGCTTGAAAA+TGG 0.287212 7_3:+72961607 Msa1122510:CDS
GGAGGACCCTTTATCATAAC+TGG 0.291396 7_3:-72960947 None:intergenic
TCAACTTGGTCACAAGAAAA+TGG 0.306209 7_3:-72960777 None:intergenic
CTAGAATCCAGTTATGATAA+AGG 0.313343 7_3:+72960940 Msa1122510:CDS
GAATTTGTACTCAAGCAAAT+TGG 0.323192 7_3:+72960702 Msa1122510:CDS
CGTTGAGCTTGATGATTTAC+CGG 0.331374 7_3:+72962245 Msa1122510:CDS
GTTTCTGCATCAGTAACATT+TGG 0.334837 7_3:-72964394 None:intergenic
TAAAGAGCCTTCACATTTAA+GGG 0.343061 7_3:-72963796 None:intergenic
TGATTATTGATCCTAATAAC+AGG 0.368581 7_3:+72963887 Msa1122510:CDS
ATACCACCTTCCTTAGCATA+TGG 0.402959 7_3:+72961244 Msa1122510:CDS
ATGCTTATCAAATCTGATAA+AGG 0.408014 7_3:+72961631 Msa1122510:CDS
GAGGTTCAAGTTTCTAAGAA+AGG 0.418599 7_3:-72960608 None:intergenic
TATTTCTACATCAAAATGAT+TGG 0.430402 7_3:-72964322 None:intergenic
TAGAATCCAGTTATGATAAA+GGG 0.435416 7_3:+72960941 Msa1122510:CDS
CTCAAGCAAATTGGAAATGA+AGG 0.438893 7_3:+72960711 Msa1122510:CDS
TCTTTAGCACAATGGTTTCA+AGG 0.453183 7_3:+72964287 Msa1122510:CDS
AGAGCTCAAATTGAAGCAAA+AGG 0.459766 7_3:+72964240 Msa1122510:CDS
ATGTTAATTAAATTAGAATC+CGG 0.462155 7_3:-72962264 None:intergenic
TGATGGAAATCTGCTATTCA+AGG 0.462612 7_3:+72963237 Msa1122510:CDS
GTAATCAAAGGTTGGGATGA+AGG 0.465069 7_3:+72961181 Msa1122510:CDS
AATTAACATCAAACTTGAGC+TGG 0.466397 7_3:+72962278 Msa1122510:CDS
TTCTTCTTTATTCAAGTACA+AGG 0.469458 7_3:-72964441 None:intergenic
ATGAAGCAAGGCTTGAAAAT+GGG 0.472246 7_3:+72961608 Msa1122510:CDS
TCAAACTTGAGCTGGTATCA+TGG 0.473440 7_3:+72962286 Msa1122510:CDS
CTAATTCAACTTCATAGTAA+AGG 0.475433 7_3:-72963028 None:intergenic
TACCACCTTCCTTAGCATAT+GGG 0.479812 7_3:+72961245 Msa1122510:CDS
ACAGTCATATATTTATGTAA+AGG 0.483204 7_3:+72962666 Msa1122510:intron
CGCATCCAAGAAATATGAAA+AGG 0.500184 7_3:+72963276 Msa1122510:CDS
TTGGCCTAATTTGAAATGAA+AGG 0.504691 7_3:-72960968 None:intergenic
ACTAAACAGATTCTTAGAAA+AGG 0.511190 7_3:+72960738 Msa1122510:CDS
AATAAGAGAAGGAGAAGGAT+GGG 0.511511 7_3:+72961384 Msa1122510:CDS
AGGTGAAGTAATCAAAGGTT+GGG 0.511565 7_3:+72961174 Msa1122510:intron
AAAATTAATAAAGCCGGTGA+AGG 0.513957 7_3:+72962351 Msa1122510:CDS
TTCACATGCGATCCTTCGTT+AGG 0.518455 7_3:-72962384 None:intergenic
TTTGAGTTCACAACTCAAGA+AGG 0.519570 7_3:+72962735 Msa1122510:CDS
TTTCATTTCAAATTAGGCCA+AGG 0.520262 7_3:+72960970 Msa1122510:CDS
TGTGGCCATAATAATTTGCA+AGG 0.521546 7_3:+72962984 Msa1122510:CDS
CAGGTGAAGTAATCAAAGGT+TGG 0.528283 7_3:+72961173 Msa1122510:intron
GAGTTGCTACAATGAAGAAA+GGG 0.530264 7_3:+72961203 Msa1122510:CDS
TATTTATGTAAAGGAGAAGA+TGG 0.534404 7_3:+72962675 Msa1122510:CDS
GGAGTTGCTACAATGAAGAA+AGG 0.534709 7_3:+72961202 Msa1122510:CDS
TTCTTAGAAAAGGTGTCACT+TGG 0.537175 7_3:+72960748 Msa1122510:CDS
TCATAACTGGATTCTAGAGA+TGG 0.538143 7_3:-72960934 None:intergenic
AGGACGATCAAACCCTTCAC+CGG 0.540522 7_3:-72962364 None:intergenic
AGAGACTTGACTGGCGATGG+AGG 0.548906 7_3:+72961346 Msa1122510:CDS
TAACAGTGAAATATGAAGCA+AGG 0.549042 7_3:+72961596 Msa1122510:intron
TTGAGATTGAAATGTTGTGT+TGG 0.551476 7_3:+72961314 Msa1122510:CDS
TAATAATTTGCAAGGAAACA+AGG 0.557912 7_3:+72962992 Msa1122510:CDS
TCCCCATATGCTAAGGAAGG+TGG 0.559182 7_3:-72961247 None:intergenic
AAAAGGAGGGAAACCAATAA+CGG 0.563551 7_3:+72960580 None:intergenic
AAAGAGCTTGATGAAGTGCT+AGG 0.570967 7_3:+72961415 Msa1122510:CDS
AAGACAATAAGAGAAGGAGA+AGG 0.572354 7_3:+72961379 Msa1122510:CDS
ACCACCTTCCTTAGCATATG+GGG 0.572462 7_3:+72961246 Msa1122510:CDS
CAATAAGAGAAGGAGAAGGA+TGG 0.574904 7_3:+72961383 Msa1122510:CDS
AACGAAGGATCGCATGTGAA+AGG 0.575934 7_3:+72962387 Msa1122510:CDS
TGTGAGCAGAAGAAGCATGA+TGG 0.577588 7_3:+72963220 Msa1122510:CDS
GTTGCAGGTGAAGTAATCAA+AGG 0.579564 7_3:+72961169 Msa1122510:intron
ACAAGATCCCTTAAATGTGA+AGG 0.580434 7_3:+72963789 Msa1122510:CDS
AAAATGAGGGTTGCATTAGG+AGG 0.583306 7_3:-72961292 None:intergenic
CGGTAAATCATCAAGCTCAA+CGG 0.587860 7_3:-72962244 None:intergenic
ATCAGAGACTTGACTGGCGA+TGG 0.591477 7_3:+72961343 Msa1122510:CDS
AAGAGTACACTGAAGCTGCT+AGG 0.591567 7_3:+72963509 Msa1122510:CDS
AAAATTGTTACTGATATCAC+AGG 0.593289 7_3:+72962309 Msa1122510:CDS
AAATTAATAAAGCCGGTGAA+GGG 0.595153 7_3:+72962352 Msa1122510:CDS
ATCTGACATCTTTAGCACAA+TGG 0.595223 7_3:+72964279 Msa1122510:CDS
GGTACTATTATTGAGAGGAA+AGG 0.598644 7_3:+72962696 Msa1122510:CDS
CAAATTACAGGATAATCTCA+AGG 0.599451 7_3:-72963458 None:intergenic
GCCTAATTTGAAATGAAAGG+AGG 0.601174 7_3:-72960965 None:intergenic
ATACCTTAAAACATCAGACT+TGG 0.621052 7_3:+72963834 Msa1122510:CDS
TATCAAATCTGATAAAGGTG+TGG 0.628019 7_3:+72961636 Msa1122510:CDS
AAGATGGTACTATTATTGAG+AGG 0.645458 7_3:+72962691 Msa1122510:CDS
AGTAGCATCAGAGACTTGAC+TGG 0.654428 7_3:+72961337 Msa1122510:CDS
GTGGAGTTTAATGTAAGTGA+TGG 0.656067 7_3:+72961655 Msa1122510:CDS
AGCTGCTAGGCTATGCACAA+AGG 0.661120 7_3:+72963522 Msa1122510:CDS
TGAATTAGTTGATTTCACCA+AGG 0.661687 7_3:+72963043 Msa1122510:CDS
GGGTTTGATCGTCCTAACGA+AGG 0.667918 7_3:+72962372 Msa1122510:CDS
GTTGCATTAGGAGGAATCAA+CGG 0.669552 7_3:-72961283 None:intergenic
AGTTGCTACAATGAAGAAAG+GGG 0.680632 7_3:+72961204 Msa1122510:CDS
GCATTAGGAGGAATCAACGG+CGG 0.744191 7_3:-72961280 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAATATTACTAATATC+AGG + chr7_3:72962177-72962196 Msa1122510:intron 10.0%
!!! CACTTTTTAAAATTATTTAT+TGG - chr7_3:72964066-72964085 None:intergenic 10.0%
!!! CAATAAATAATTTTAAAAAG+TGG + chr7_3:72964064-72964083 Msa1122510:intron 10.0%
!!! TTTGATGTTACTTTTAAATT+AGG + chr7_3:72961129-72961148 Msa1122510:intron 15.0%
!! ATGTTAATTAAATTAGAATC+CGG - chr7_3:72962267-72962286 None:intergenic 15.0%
!!! TGATTTATTTTTACTTTTGT+TGG - chr7_3:72962607-72962626 None:intergenic 15.0%
!!! ATAGTAAAGGATTTTATTAT+TGG - chr7_3:72963018-72963037 None:intergenic 15.0%
!!! AATGAAATTCTTTATTGATT+TGG + chr7_3:72963367-72963386 Msa1122510:intron 15.0%
!! ATAAATTAACTTTGCAATAT+TGG + chr7_3:72963718-72963737 Msa1122510:intron 15.0%
!!! ATCCATTCAATTTAATTTTT+GGG + chr7_3:72964365-72964384 Msa1122510:three_prime_UTR 15.0%
!! GAAATGAATATGAAATTCTT+TGG + chr7_3:72961105-72961124 Msa1122510:intron 20.0%
!!! AGCATTAAAGACTTTATTTT+TGG + chr7_3:72961691-72961710 Msa1122510:intron 20.0%
!!! ATTTTTATTTTTGCTGCATA+AGG + chr7_3:72962137-72962156 Msa1122510:intron 20.0%
!! CTGAAAAAAATTAATAAAGC+CGG + chr7_3:72962345-72962364 Msa1122510:CDS 20.0%
!!! GACAGTAGTTTAAAATTTTA+CGG + chr7_3:72962474-72962493 Msa1122510:intron 20.0%
!!! AGTTTAAAATTTTACGGTTA+AGG + chr7_3:72962480-72962499 Msa1122510:intron 20.0%
!! ACAGTCATATATTTATGTAA+AGG + chr7_3:72962666-72962685 Msa1122510:intron 20.0%
!! CATATGATTGTGAATAAATA+GGG - chr7_3:72963939-72963958 None:intergenic 20.0%
!! TTGAACCTAATTATATATGT+CGG + chr7_3:72964093-72964112 Msa1122510:intron 20.0%
!! TGAATAATTATTTGTTCACT+TGG + chr7_3:72964185-72964204 Msa1122510:intron 20.0%
!!! TATTTCTACATCAAAATGAT+TGG - chr7_3:72964325-72964344 None:intergenic 20.0%
!!! CATCCATTCAATTTAATTTT+TGG + chr7_3:72964364-72964383 Msa1122510:three_prime_UTR 20.0%
!! TACCCAAAAATTAAATTGAA+TGG - chr7_3:72964370-72964389 None:intergenic 20.0%
! GAGATAAAAAGAGAAAAAGA+AGG - chr7_3:72960636-72960655 None:intergenic 25.0%
! ACTAAACAGATTCTTAGAAA+AGG + chr7_3:72960738-72960757 Msa1122510:CDS 25.0%
! GATATATTTAGAGAGTGATA+TGG - chr7_3:72960813-72960832 None:intergenic 25.0%
!! TTTAAAGGACAAGTTGAAAA+TGG + chr7_3:72960910-72960929 Msa1122510:CDS 25.0%
! TAGAATCCAGTTATGATAAA+GGG + chr7_3:72960941-72960960 Msa1122510:CDS 25.0%
! AGAAAAAGTTGAATTACCAA+CGG + chr7_3:72961020-72961039 Msa1122510:intron 25.0%
! TTAGGCTAAGTTATTGAATT+TGG + chr7_3:72961147-72961166 Msa1122510:intron 25.0%
! CATTTCAATCTCAAAAATGA+GGG - chr7_3:72961308-72961327 None:intergenic 25.0%
! ACATTTCAATCTCAAAAATG+AGG - chr7_3:72961309-72961328 None:intergenic 25.0%
! ATGAAAAAGACAATAAGAGA+AGG + chr7_3:72961373-72961392 Msa1122510:CDS 25.0%
! ATGCTTATCAAATCTGATAA+AGG + chr7_3:72961631-72961650 Msa1122510:CDS 25.0%
! ACCATCTGATATTTATCTAA+CGG + chr7_3:72961815-72961834 Msa1122510:intron 25.0%
! AAACAGTAGTAGATATTCAA+TGG - chr7_3:72961893-72961912 None:intergenic 25.0%
! CAAAATTTCTCATAACTTCT+AGG - chr7_3:72961922-72961941 None:intergenic 25.0%
! AAAATTGTTACTGATATCAC+AGG + chr7_3:72962309-72962328 Msa1122510:CDS 25.0%
!! ACTTTTGTTGGAAATAGATT+CGG - chr7_3:72962595-72962614 None:intergenic 25.0%
! TATTTATGTAAAGGAGAAGA+TGG + chr7_3:72962675-72962694 Msa1122510:CDS 25.0%
! TTGATGTTATACAAGAACAA+GGG + chr7_3:72962765-72962784 Msa1122510:intron 25.0%
!!! AAGGGTCATTTTTTTTTTCT+TGG + chr7_3:72962783-72962802 Msa1122510:intron 25.0%
!!! ATCAATGCTGAATATTTTTG+TGG + chr7_3:72962966-72962985 Msa1122510:CDS 25.0%
! TGTTTCCTTGCAAATTATTA+TGG - chr7_3:72962992-72963011 None:intergenic 25.0%
!! TAATAATTTGCAAGGAAACA+AGG + chr7_3:72962992-72963011 Msa1122510:CDS 25.0%
! CTAATTCAACTTCATAGTAA+AGG - chr7_3:72963031-72963050 None:intergenic 25.0%
!!! TCTTTATTGATTTGGTATGT+AGG + chr7_3:72963375-72963394 Msa1122510:intron 25.0%
! AAGCGTTAATTAAGTGAATT+AGG - chr7_3:72963559-72963578 None:intergenic 25.0%
! TGATTATTGATCCTAATAAC+AGG + chr7_3:72963887-72963906 Msa1122510:CDS 25.0%
! AATTGATTGTACCTGTTATT+AGG - chr7_3:72963901-72963920 None:intergenic 25.0%
! GCATATGATTGTGAATAAAT+AGG - chr7_3:72963940-72963959 None:intergenic 25.0%
!!! ACGTTTTCAATCTAATTTGT+TGG + chr7_3:72964131-72964150 Msa1122510:intron 25.0%
! TTCTTCTTTATTCAAGTACA+AGG - chr7_3:72964444-72964463 None:intergenic 25.0%
AAAAGAGAAAAAGAAGGAAG+AGG - chr7_3:72960630-72960649 None:intergenic 30.0%
! CTCTTTTCATTTCATTCCAA+TGG + chr7_3:72960653-72960672 Msa1122510:exon 30.0%
GAATTTGTACTCAAGCAAAT+TGG + chr7_3:72960702-72960721 Msa1122510:CDS 30.0%
! ATGGTTTTTAACCTTCAACT+TGG - chr7_3:72960794-72960813 None:intergenic 30.0%
TGGTACAAACATAAAACAAG+TGG - chr7_3:72960835-72960854 None:intergenic 30.0%
TTGTACCATAAGTCAGTTAA+AGG + chr7_3:72960847-72960866 Msa1122510:intron 30.0%
TGTACCATAAGTCAGTTAAA+GGG + chr7_3:72960848-72960867 Msa1122510:intron 30.0%
! CACCTTTCAGTTCATTTTAA+AGG + chr7_3:72960895-72960914 Msa1122510:intron 30.0%
!! GTCCTTTAAAATGAACTGAA+AGG - chr7_3:72960900-72960919 None:intergenic 30.0%
CTAGAATCCAGTTATGATAA+AGG + chr7_3:72960940-72960959 Msa1122510:CDS 30.0%
TCCTCCTTTCATTTCAAATT+AGG + chr7_3:72960964-72960983 Msa1122510:CDS 30.0%
! TTGGCCTAATTTGAAATGAA+AGG - chr7_3:72960971-72960990 None:intergenic 30.0%
TTTCATTTCAAATTAGGCCA+AGG + chr7_3:72960970-72960989 Msa1122510:CDS 30.0%
! AATAAACAAGGTACTTACCT+TGG - chr7_3:72960990-72961009 None:intergenic 30.0%
TTTCTGTCTATAATTTCCGT+TGG - chr7_3:72961039-72961058 None:intergenic 30.0%
AAGTTATTGAATTTGGTTGC+AGG + chr7_3:72961154-72961173 Msa1122510:intron 30.0%
TTGAGATTGAAATGTTGTGT+TGG + chr7_3:72961314-72961333 Msa1122510:CDS 30.0%
TAACAGTGAAATATGAAGCA+AGG + chr7_3:72961596-72961615 Msa1122510:intron 30.0%
TATCAAATCTGATAAAGGTG+TGG + chr7_3:72961636-72961655 Msa1122510:CDS 30.0%
! AATATTGACTGCAGAGAATT+TGG + chr7_3:72961865-72961884 Msa1122510:intron 30.0%
ATAGAATACTGATCAATCTC+TGG + chr7_3:72961959-72961978 Msa1122510:intron 30.0%
TAGAATACTGATCAATCTCT+GGG + chr7_3:72961960-72961979 Msa1122510:intron 30.0%
AATTAACATCAAACTTGAGC+TGG + chr7_3:72962278-72962297 Msa1122510:CDS 30.0%
AAAATTAATAAAGCCGGTGA+AGG + chr7_3:72962351-72962370 Msa1122510:CDS 30.0%
AAATTAATAAAGCCGGTGAA+GGG + chr7_3:72962352-72962371 Msa1122510:CDS 30.0%
AAGATGGTACTATTATTGAG+AGG + chr7_3:72962691-72962710 Msa1122510:CDS 30.0%
GTTGATGTTATACAAGAACA+AGG + chr7_3:72962764-72962783 Msa1122510:intron 30.0%
! TGAATTAGTTGATTTCACCA+AGG + chr7_3:72963043-72963062 Msa1122510:CDS 30.0%
!! GTGTTGATGTTTTGAATTGA+TGG - chr7_3:72963100-72963119 None:intergenic 30.0%
CAATTCAAAACATCAACACT+TGG + chr7_3:72963101-72963120 Msa1122510:intron 30.0%
! TGAGTTTCCATTTTCCAAAA+TGG - chr7_3:72963184-72963203 None:intergenic 30.0%
TATTCAAGGCTCAAAATTTC+AGG + chr7_3:72963251-72963270 Msa1122510:CDS 30.0%
CAAATTACAGGATAATCTCA+AGG - chr7_3:72963461-72963480 None:intergenic 30.0%
CTACATCTGTCTTAATAGAA+AGG - chr7_3:72963622-72963641 None:intergenic 30.0%
TAAAGAGCCTTCACATTTAA+GGG - chr7_3:72963799-72963818 None:intergenic 30.0%
ATACCTTAAAACATCAGACT+TGG + chr7_3:72963834-72963853 Msa1122510:CDS 30.0%
TGTCAATATCATGTCTAATG+TGG - chr7_3:72964029-72964048 None:intergenic 30.0%
CAACACCGACATATATAATT+AGG - chr7_3:72964101-72964120 None:intergenic 30.0%
CTAATTATATATGTCGGTGT+TGG + chr7_3:72964099-72964118 Msa1122510:intron 30.0%
CATAGAATCAACCTCAAAAT+TGG + chr7_3:72964416-72964435 Msa1122510:three_prime_UTR 30.0%
AAGAAAGGATAAGCCGTTAT+TGG - chr7_3:72960596-72960615 None:intergenic 35.0%
! GAGGTTCAAGTTTCTAAGAA+AGG - chr7_3:72960611-72960630 None:intergenic 35.0%
CTCAAGCAAATTGGAAATGA+AGG + chr7_3:72960711-72960730 Msa1122510:CDS 35.0%
!! TTCTTAGAAAAGGTGTCACT+TGG + chr7_3:72960748-72960767 Msa1122510:CDS 35.0%
TCAACTTGGTCACAAGAAAA+TGG - chr7_3:72960780-72960799 None:intergenic 35.0%
!! TTTTCTTGTGACCAAGTTGA+AGG + chr7_3:72960780-72960799 Msa1122510:CDS 35.0%
! ATGACCCTTTAACTGACTTA+TGG - chr7_3:72960855-72960874 None:intergenic 35.0%
! TCATAACTGGATTCTAGAGA+TGG - chr7_3:72960937-72960956 None:intergenic 35.0%
! GCCTAATTTGAAATGAAAGG+AGG - chr7_3:72960968-72960987 None:intergenic 35.0%
CTAACAGTCTGCAATAAACA+AGG - chr7_3:72961002-72961021 None:intergenic 35.0%
AGGTGAAGTAATCAAAGGTT+GGG + chr7_3:72961174-72961193 Msa1122510:intron 35.0%
GAGTTGCTACAATGAAGAAA+GGG + chr7_3:72961203-72961222 Msa1122510:CDS 35.0%
AGTTGCTACAATGAAGAAAG+GGG + chr7_3:72961204-72961223 Msa1122510:CDS 35.0%
TCAAAAATGAGGGTTGCATT+AGG - chr7_3:72961298-72961317 None:intergenic 35.0%
AAGACAATAAGAGAAGGAGA+AGG + chr7_3:72961379-72961398 Msa1122510:CDS 35.0%
AATAAGAGAAGGAGAAGGAT+GGG + chr7_3:72961384-72961403 Msa1122510:CDS 35.0%
TATGAAGCAAGGCTTGAAAA+TGG + chr7_3:72961607-72961626 Msa1122510:CDS 35.0%
ATGAAGCAAGGCTTGAAAAT+GGG + chr7_3:72961608-72961627 Msa1122510:CDS 35.0%
GTGGAGTTTAATGTAAGTGA+TGG + chr7_3:72961655-72961674 Msa1122510:CDS 35.0%
AGTCTGACAAATGAAAACTC+AGG - chr7_3:72961785-72961804 None:intergenic 35.0%
GCCGTTAGATAAATATCAGA+TGG - chr7_3:72961819-72961838 None:intergenic 35.0%
GCAGTAAAGACAATGAGAAA+AGG + chr7_3:72962022-72962041 Msa1122510:intron 35.0%
! TCAGGACATAATTTTGCAGA+TGG + chr7_3:72962195-72962214 Msa1122510:intron 35.0%
!! ATCACATCGATTTCTGTATG+AGG - chr7_3:72962424-72962443 None:intergenic 35.0%
CAATGTGAGTCATTCAATCT+CGG + chr7_3:72962529-72962548 Msa1122510:intron 35.0%
GGTACTATTATTGAGAGGAA+AGG + chr7_3:72962696-72962715 Msa1122510:CDS 35.0%
! TTTGAGTTCACAACTCAAGA+AGG + chr7_3:72962735-72962754 Msa1122510:CDS 35.0%
!! TCTTGGTCAAGTTTTTCGAT+AGG + chr7_3:72962800-72962819 Msa1122510:intron 35.0%
!! CTTGGTCAAGTTTTTCGATA+GGG + chr7_3:72962801-72962820 Msa1122510:intron 35.0%
! ATTTTCAGAACAAGTGCAAG+AGG + chr7_3:72962890-72962909 Msa1122510:CDS 35.0%
! TTTTCAGAACAAGTGCAAGA+GGG + chr7_3:72962891-72962910 Msa1122510:CDS 35.0%
! TGTGGCCATAATAATTTGCA+AGG + chr7_3:72962984-72963003 Msa1122510:CDS 35.0%
TACATAGAAGAAGCTAACCT+TGG - chr7_3:72963063-72963082 None:intergenic 35.0%
! TTTTCACAACTTCTGTGAAC+AGG + chr7_3:72963153-72963172 Msa1122510:intron 35.0%
TGATGGAAATCTGCTATTCA+AGG + chr7_3:72963237-72963256 Msa1122510:CDS 35.0%
CGCATCCAAGAAATATGAAA+AGG + chr7_3:72963276-72963295 Msa1122510:CDS 35.0%
! GCAGACCTTTTCATATTTCT+TGG - chr7_3:72963284-72963303 None:intergenic 35.0%
TCCAAGAAATCATGCACAAA+TGG + chr7_3:72963312-72963331 Msa1122510:intron 35.0%
TCCATTTGTGCATGATTTCT+TGG - chr7_3:72963316-72963335 None:intergenic 35.0%
AGCAGCATTGTTCAAATTAC+AGG - chr7_3:72963473-72963492 None:intergenic 35.0%
! TGCTGCTTGTCAACTTAAAT+TGG + chr7_3:72963486-72963505 Msa1122510:CDS 35.0%
TCGCTCTGTCTCATATTAAA+CGG + chr7_3:72963670-72963689 Msa1122510:intron 35.0%
AGTTGATCATGTCTTGAAAC+AGG + chr7_3:72963759-72963778 Msa1122510:intron 35.0%
CATTTAAGGGATCTTGTTCT+AGG - chr7_3:72963786-72963805 None:intergenic 35.0%
ACAAGATCCCTTAAATGTGA+AGG + chr7_3:72963789-72963808 Msa1122510:CDS 35.0%
GTAAAGAGCCTTCACATTTA+AGG - chr7_3:72963800-72963819 None:intergenic 35.0%
!!! CTGATGTTTTAAGGTATGCT+TGG - chr7_3:72963831-72963850 None:intergenic 35.0%
! TCTCCAAGTCTGATGTTTTA+AGG - chr7_3:72963840-72963859 None:intergenic 35.0%
CAATGTCCATGTATTGTCTA+TGG - chr7_3:72964006-72964025 None:intergenic 35.0%
AGAGCTCAAATTGAAGCAAA+AGG + chr7_3:72964240-72964259 Msa1122510:CDS 35.0%
ATCTGACATCTTTAGCACAA+TGG + chr7_3:72964279-72964298 Msa1122510:CDS 35.0%
TCTTTAGCACAATGGTTTCA+AGG + chr7_3:72964287-72964306 Msa1122510:CDS 35.0%
GTTTCTGCATCAGTAACATT+TGG - chr7_3:72964397-72964416 None:intergenic 35.0%
! AGTACAAGGATCCAATTTTG+AGG - chr7_3:72964430-72964449 None:intergenic 35.0%
!!! TTTTGTAGAGAGAGTGCCAT+TGG - chr7_3:72960672-72960691 None:intergenic 40.0%
GTTGCAGGTGAAGTAATCAA+AGG + chr7_3:72961169-72961188 Msa1122510:intron 40.0%
CAGGTGAAGTAATCAAAGGT+TGG + chr7_3:72961173-72961192 Msa1122510:intron 40.0%
GTAATCAAAGGTTGGGATGA+AGG + chr7_3:72961181-72961200 Msa1122510:CDS 40.0%
GGAGTTGCTACAATGAAGAA+AGG + chr7_3:72961202-72961221 Msa1122510:CDS 40.0%
ATACCACCTTCCTTAGCATA+TGG + chr7_3:72961244-72961263 Msa1122510:CDS 40.0%
TACCACCTTCCTTAGCATAT+GGG + chr7_3:72961245-72961264 Msa1122510:CDS 40.0%
! TTTTCCCCATATGCTAAGGA+AGG - chr7_3:72961253-72961272 None:intergenic 40.0%
TCCTTAGCATATGGGGAAAA+AGG + chr7_3:72961253-72961272 Msa1122510:CDS 40.0%
! ACCTTTTTCCCCATATGCTA+AGG - chr7_3:72961257-72961276 None:intergenic 40.0%
GTTGCATTAGGAGGAATCAA+CGG - chr7_3:72961286-72961305 None:intergenic 40.0%
AAAATGAGGGTTGCATTAGG+AGG - chr7_3:72961295-72961314 None:intergenic 40.0%
CAATAAGAGAAGGAGAAGGA+TGG + chr7_3:72961383-72961402 Msa1122510:CDS 40.0%
! AGCACTTCATCAAGCTCTTT+TGG - chr7_3:72961415-72961434 None:intergenic 40.0%
! AAAGAGCTTGATGAAGTGCT+AGG + chr7_3:72961415-72961434 Msa1122510:CDS 40.0%
!! ATCTCTGGGATGCTTCAATT+AGG + chr7_3:72961974-72961993 Msa1122510:intron 40.0%
TGTCTTTACTGCAATGCTCA+TGG - chr7_3:72962014-72962033 None:intergenic 40.0%
CGGTAAATCATCAAGCTCAA+CGG - chr7_3:72962247-72962266 None:intergenic 40.0%
! CGTTGAGCTTGATGATTTAC+CGG + chr7_3:72962245-72962264 Msa1122510:CDS 40.0%
TCAAACTTGAGCTGGTATCA+TGG + chr7_3:72962286-72962305 Msa1122510:CDS 40.0%
!! GGAGAAGCCATTTTGGAAAA+TGG + chr7_3:72963174-72963193 Msa1122510:intron 40.0%
CCATGTATTGTCTATGGTAG+TGG - chr7_3:72964000-72964019 None:intergenic 40.0%
CCACTACCATAGACAATACA+TGG + chr7_3:72963997-72964016 Msa1122510:intron 40.0%
GGAGGACCCTTTATCATAAC+TGG - chr7_3:72960950-72960969 None:intergenic 45.0%
ACCACCTTCCTTAGCATATG+GGG + chr7_3:72961246-72961265 Msa1122510:CDS 45.0%
AGTAGCATCAGAGACTTGAC+TGG + chr7_3:72961337-72961356 Msa1122510:CDS 45.0%
TTTACTGCAATGCTCATGGC+TGG - chr7_3:72962010-72962029 None:intergenic 45.0%
GACAATGAGAAAAGGCGAAG+TGG + chr7_3:72962030-72962049 Msa1122510:intron 45.0%
TTCACATGCGATCCTTCGTT+AGG - chr7_3:72962387-72962406 None:intergenic 45.0%
AACGAAGGATCGCATGTGAA+AGG + chr7_3:72962387-72962406 Msa1122510:CDS 45.0%
!! ACTGTCACTAGTGTCGATGA+TGG + chr7_3:72962451-72962470 Msa1122510:intron 45.0%
!! CTGTCACTAGTGTCGATGAT+GGG + chr7_3:72962452-72962471 Msa1122510:intron 45.0%
!! GGAAATAGATTCGGTGCAGT+CGG - chr7_3:72962586-72962605 None:intergenic 45.0%
! GTGAACAGGAGAAGCCATTT+TGG + chr7_3:72963167-72963186 Msa1122510:intron 45.0%
! TGTGAGCAGAAGAAGCATGA+TGG + chr7_3:72963220-72963239 Msa1122510:CDS 45.0%
GTGCATGATTTCTTGGATCG+CGG - chr7_3:72963309-72963328 None:intergenic 45.0%
! AAGAGTACACTGAAGCTGCT+AGG + chr7_3:72963509-72963528 Msa1122510:CDS 45.0%
TCCCCATATGCTAAGGAAGG+TGG - chr7_3:72961250-72961269 None:intergenic 50.0%
GCATTAGGAGGAATCAACGG+CGG - chr7_3:72961283-72961302 None:intergenic 50.0%
ATCAGAGACTTGACTGGCGA+TGG + chr7_3:72961343-72961362 Msa1122510:CDS 50.0%
AGGACGATCAAACCCTTCAC+CGG - chr7_3:72962367-72962386 None:intergenic 50.0%
GGGTTTGATCGTCCTAACGA+AGG + chr7_3:72962372-72962391 Msa1122510:CDS 50.0%
AGCTGCTAGGCTATGCACAA+AGG + chr7_3:72963522-72963541 Msa1122510:CDS 50.0%
AGAGACTTGACTGGCGATGG+AGG + chr7_3:72961346-72961365 Msa1122510:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 72960589 72964472 72960589 ID=Msa1122510;Name=Msa1122510
chr7_3 mRNA 72960589 72964472 72960589 ID=Msa1122510-mRNA-1;Parent=Msa1122510;Name=Msa1122510-mRNA-1;_AED=0.15;_eAED=0.15;_QI=83|0.8|0.90|1|1|1|11|154|510
chr7_3 exon 72960589 72960801 72960589 ID=Msa1122510-mRNA-1:exon:19049;Parent=Msa1122510-mRNA-1
chr7_3 exon 72960905 72960991 72960905 ID=Msa1122510-mRNA-1:exon:19050;Parent=Msa1122510-mRNA-1
chr7_3 exon 72961176 72961436 72961176 ID=Msa1122510-mRNA-1:exon:19051;Parent=Msa1122510-mRNA-1
chr7_3 exon 72961602 72961676 72961602 ID=Msa1122510-mRNA-1:exon:19052;Parent=Msa1122510-mRNA-1
chr7_3 exon 72962214 72962408 72962214 ID=Msa1122510-mRNA-1:exon:19053;Parent=Msa1122510-mRNA-1
chr7_3 exon 72962670 72962756 72962670 ID=Msa1122510-mRNA-1:exon:19054;Parent=Msa1122510-mRNA-1
chr7_3 exon 72962865 72963064 72962865 ID=Msa1122510-mRNA-1:exon:19055;Parent=Msa1122510-mRNA-1
chr7_3 exon 72963175 72963297 72963175 ID=Msa1122510-mRNA-1:exon:19056;Parent=Msa1122510-mRNA-1
chr7_3 exon 72963397 72963543 72963397 ID=Msa1122510-mRNA-1:exon:19057;Parent=Msa1122510-mRNA-1
chr7_3 exon 72963781 72963908 72963781 ID=Msa1122510-mRNA-1:exon:19058;Parent=Msa1122510-mRNA-1
chr7_3 exon 72964219 72964472 72964219 ID=Msa1122510-mRNA-1:exon:19059;Parent=Msa1122510-mRNA-1
chr7_3 five_prime_UTR 72960589 72960671 72960589 ID=Msa1122510-mRNA-1:five_prime_utr;Parent=Msa1122510-mRNA-1
chr7_3 CDS 72960672 72960801 72960672 ID=Msa1122510-mRNA-1:cds;Parent=Msa1122510-mRNA-1
chr7_3 CDS 72960905 72960991 72960905 ID=Msa1122510-mRNA-1:cds;Parent=Msa1122510-mRNA-1
chr7_3 CDS 72961176 72961436 72961176 ID=Msa1122510-mRNA-1:cds;Parent=Msa1122510-mRNA-1
chr7_3 CDS 72961602 72961676 72961602 ID=Msa1122510-mRNA-1:cds;Parent=Msa1122510-mRNA-1
chr7_3 CDS 72962214 72962408 72962214 ID=Msa1122510-mRNA-1:cds;Parent=Msa1122510-mRNA-1
chr7_3 CDS 72962670 72962756 72962670 ID=Msa1122510-mRNA-1:cds;Parent=Msa1122510-mRNA-1
chr7_3 CDS 72962865 72963064 72962865 ID=Msa1122510-mRNA-1:cds;Parent=Msa1122510-mRNA-1
chr7_3 CDS 72963175 72963297 72963175 ID=Msa1122510-mRNA-1:cds;Parent=Msa1122510-mRNA-1
chr7_3 CDS 72963397 72963543 72963397 ID=Msa1122510-mRNA-1:cds;Parent=Msa1122510-mRNA-1
chr7_3 CDS 72963781 72963908 72963781 ID=Msa1122510-mRNA-1:cds;Parent=Msa1122510-mRNA-1
chr7_3 CDS 72964219 72964318 72964219 ID=Msa1122510-mRNA-1:cds;Parent=Msa1122510-mRNA-1
chr7_3 three_prime_UTR 72964319 72964472 72964319 ID=Msa1122510-mRNA-1:three_prime_utr;Parent=Msa1122510-mRNA-1
Gene Sequence

>Msa1122510

ATGGCACTCTCTCTACAAAATGAAGACTCAGAATTTGTACTCAAGCAAATTGGAAATGAAGGTCTCACTAAACAGATTCTTAGAAAAGGTGTCACTTGGCAAACTCCATTTTCTTGTGACCAAGTTGAAGTTCATTTTAAAGGACAAGTTGAAAATGGACCATCTCTAGAATCCAGTTATGATAAAGGGTCCTCCTTTCATTTCAAATTAGGCCAAGGTGAAGTAATCAAAGGTTGGGATGAAGGAGTTGCTACAATGAAGAAAGGGGAGAGAGCAATCTTCAAAATACCACCTTCCTTAGCATATGGGGAAAAAGGTTCTCCGCCGTTGATTCCTCCTAATGCAACCCTCATTTTTGAGATTGAAATGTTGTGTTGGAGTAGCATCAGAGACTTGACTGGCGATGGAGGAATCATGAAAAAGACAATAAGAGAAGGAGAAGGATGGGCTACTCCAAAAGAGCTTGATGAAGTGCTAGTGAAATATGAAGCAAGGCTTGAAAATGGGATGCTTATCAAATCTGATAAAGGTGTGGAGTTTAATGTAAGTGATGATGGCGCTATTAGTCAAAATTCAAATAGAACCGTTGAGCTTGATGATTTACCGGATTCTAATTTAATTAACATCAAACTTGAGCTGGTATCATGGAAAATTGTTACTGATATCACAGGAGATAAGAAAATACTGAAAAAAATTAATAAAGCCGGTGAAGGGTTTGATCGTCCTAACGAAGGATCGCATGTGAAAGTCATATATTTATGTAAAGGAGAAGATGGTACTATTATTGAGAGGAAAGGATCAAAAGAAGAACTTTTTGAGTTCACAACTCAAGAAGATCTTTCTGCTAATTTGTTCTATGCATTTTCAGAACAAGTGCAAGAGGGTCTAGAAAGAGCAATAATGACAATGAAAAAAGCAGAACAAGCTCTAGTGACTATCAATGCTGAATATTTTTGTGGCCATAATAATTTGCAAGGAAACAAGGCCAATAATAAAATCCTTTACTATGAAGTTGAATTAGTTGATTTCACCAAGGAGAAGCCATTTTGGAAAATGGAAACTCAAGAGAAACTAGAAGCTTGTGAGCAGAAGAAGCATGATGGAAATCTGCTATTCAAGGCTCAAAATTTCAGGCGCGCATCCAAGAAATATGAAAAGGCTGTAAAATACATTGAATTTGATCACACATTCAGTGACGACGAGAAGTGTCATGCTAATACCTTGAGATTATCCTGTAATTTGAACAATGCTGCTTGTCAACTTAAATTGGAAGAGTACACTGAAGCTGCTAGGCTATGCACAAAGGTCCTAGAACAAGATCCCTTAAATGTGAAGGCTCTTTACAGAAGATGCCAAGCATACCTTAAAACATCAGACTTGGAGAAAGCTGAAGCTGACATTAAAAGAGCTTTGATTATTGATCCTAATAACAGAGAAATTAAACTTGAGTACAAAGAGCTCAAATTGAAGCAAAAGGAATACAATAAATATGAATCTGACATCTTTAGCACAATGGTTTCAAGGATGAATTAG

Protein sequence

>Msa1122510

MALSLQNEDSEFVLKQIGNEGLTKQILRKGVTWQTPFSCDQVEVHFKGQVENGPSLESSYDKGSSFHFKLGQGEVIKGWDEGVATMKKGERAIFKIPPSLAYGEKGSPPLIPPNATLIFEIEMLCWSSIRDLTGDGGIMKKTIREGEGWATPKELDEVLVKYEARLENGMLIKSDKGVEFNVSDDGAISQNSNRTVELDDLPDSNLINIKLELVSWKIVTDITGDKKILKKINKAGEGFDRPNEGSHVKVIYLCKGEDGTIIERKGSKEELFEFTTQEDLSANLFYAFSEQVQEGLERAIMTMKKAEQALVTINAEYFCGHNNLQGNKANNKILYYEVELVDFTKEKPFWKMETQEKLEACEQKKHDGNLLFKAQNFRRASKKYEKAVKYIEFDHTFSDDEKCHANTLRLSCNLNNAACQLKLEEYTEAARLCTKVLEQDPLNVKALYRRCQAYLKTSDLEKAEADIKRALIIDPNNREIKLEYKELKLKQKEYNKYESDIFSTMVSRMN*