Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59242.t1 | XP_003609315.1 | 100 | 345 | 0 | 0 | 1 | 345 | 1 | 345 | 2.40E-183 | 651.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59242.t1 | Q3E6T0 | 81.7 | 344 | 63 | 0 | 2 | 345 | 6 | 349 | 3.3e-157 | 555.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59242.t1 | G7JCY0 | 100.0 | 345 | 0 | 0 | 1 | 345 | 1 | 345 | 1.7e-183 | 651.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene59242 | 0.824371 | 8.37E-54 | -1.69E-46 |
| MS.gene04918 | MS.gene59242 | 0.804099 | 2.54E-49 | -1.69E-46 |
| MS.gene049227 | MS.gene59242 | 0.818252 | 2.16E-52 | -1.69E-46 |
| MS.gene049283 | MS.gene59242 | 0.812501 | 4.11E-51 | -1.69E-46 |
| MS.gene049350 | MS.gene59242 | 0.860668 | 1.76E-63 | -1.69E-46 |
| MS.gene049499 | MS.gene59242 | 0.806577 | 7.69E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene59242 | 0.871045 | 9.22E-67 | -1.69E-46 |
| MS.gene049807 | MS.gene59242 | 0.889709 | 1.90E-73 | -1.69E-46 |
| MS.gene049824 | MS.gene59242 | 0.830559 | 2.74E-55 | -1.69E-46 |
| MS.gene049825 | MS.gene59242 | 0.8047 | 1.90E-49 | -1.69E-46 |
| MS.gene049887 | MS.gene59242 | 0.839117 | 1.92E-57 | -1.69E-46 |
| MS.gene050224 | MS.gene59242 | 0.804732 | 1.88E-49 | -1.69E-46 |
| MS.gene050258 | MS.gene59242 | 0.80262 | 5.14E-49 | -1.69E-46 |
| MS.gene050359 | MS.gene59242 | 0.805525 | 1.28E-49 | -1.69E-46 |
| MS.gene050414 | MS.gene59242 | 0.85374 | 1.96E-61 | -1.69E-46 |
| MS.gene050551 | MS.gene59242 | 0.805364 | 1.38E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene59242 | 0.820944 | 5.25E-53 | -1.69E-46 |
| MS.gene050561 | MS.gene59242 | 0.8067 | 7.24E-50 | -1.69E-46 |
| MS.gene050562 | MS.gene59242 | 0.812359 | 4.41E-51 | -1.69E-46 |
| MS.gene050646 | MS.gene59242 | 0.830549 | 2.76E-55 | -1.69E-46 |
| MS.gene050752 | MS.gene59242 | 0.812146 | 4.91E-51 | -1.69E-46 |
| MS.gene050838 | MS.gene59242 | 0.850344 | 1.80E-60 | -1.69E-46 |
| MS.gene050945 | MS.gene59242 | 0.872127 | 4.04E-67 | -1.69E-46 |
| MS.gene050955 | MS.gene59242 | 0.802662 | 5.04E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene59242 | 0.835844 | 1.32E-56 | -1.69E-46 |
| MS.gene051201 | MS.gene59242 | 0.830552 | 2.75E-55 | -1.69E-46 |
| MS.gene051234 | MS.gene59242 | 0.896225 | 4.53E-76 | -1.69E-46 |
| MS.gene051279 | MS.gene59242 | 0.832936 | 7.11E-56 | -1.69E-46 |
| MS.gene051343 | MS.gene59242 | 0.845903 | 3.04E-59 | -1.69E-46 |
| MS.gene051381 | MS.gene59242 | 0.803217 | 3.87E-49 | -1.69E-46 |
| MS.gene051450 | MS.gene59242 | 0.821433 | 4.05E-53 | -1.69E-46 |
| MS.gene051628 | MS.gene59242 | 0.819419 | 1.17E-52 | -1.69E-46 |
| MS.gene051699 | MS.gene59242 | 0.825119 | 5.58E-54 | -1.69E-46 |
| MS.gene051700 | MS.gene59242 | 0.816204 | 6.24E-52 | -1.69E-46 |
| MS.gene051719 | MS.gene59242 | 0.801702 | 7.95E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene59242 | 0.822852 | 1.90E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene59242 | 0.821016 | 5.05E-53 | -1.69E-46 |
| MS.gene051832 | MS.gene59242 | 0.812136 | 4.94E-51 | -1.69E-46 |
| MS.gene051852 | MS.gene59242 | 0.84546 | 4.01E-59 | -1.69E-46 |
| MS.gene051885 | MS.gene59242 | 0.856579 | 2.92E-62 | -1.69E-46 |
| MS.gene051902 | MS.gene59242 | 0.80869 | 2.74E-50 | -1.69E-46 |
| MS.gene052016 | MS.gene59242 | 0.828975 | 6.67E-55 | -1.69E-46 |
| MS.gene052072 | MS.gene59242 | 0.856953 | 2.27E-62 | -1.69E-46 |
| MS.gene052133 | MS.gene59242 | 0.818289 | 2.12E-52 | -1.69E-46 |
| MS.gene052239 | MS.gene59242 | -0.825721 | 4.02E-54 | -1.69E-46 |
| MS.gene052242 | MS.gene59242 | -0.812302 | 4.54E-51 | -1.69E-46 |
| MS.gene052307 | MS.gene59242 | 0.867122 | 1.73E-65 | -1.69E-46 |
| MS.gene052335 | MS.gene59242 | 0.857601 | 1.46E-62 | -1.69E-46 |
| MS.gene052463 | MS.gene59242 | 0.846561 | 2.01E-59 | -1.69E-46 |
| MS.gene052514 | MS.gene59242 | 0.824336 | 8.53E-54 | -1.69E-46 |
| MS.gene052516 | MS.gene59242 | 0.845197 | 4.72E-59 | -1.69E-46 |
| MS.gene052533 | MS.gene59242 | 0.887962 | 8.99E-73 | -1.69E-46 |
| MS.gene052609 | MS.gene59242 | 0.852268 | 5.16E-61 | -1.69E-46 |
| MS.gene052793 | MS.gene59242 | 0.821953 | 3.07E-53 | -1.69E-46 |
| MS.gene053079 | MS.gene59242 | 0.83231 | 1.02E-55 | -1.69E-46 |
| MS.gene053122 | MS.gene59242 | 0.843728 | 1.17E-58 | -1.69E-46 |
| MS.gene053143 | MS.gene59242 | 0.889547 | 2.20E-73 | -1.69E-46 |
| MS.gene053144 | MS.gene59242 | 0.86302 | 3.35E-64 | -1.69E-46 |
| MS.gene053171 | MS.gene59242 | 0.840757 | 7.18E-58 | -1.69E-46 |
| MS.gene053226 | MS.gene59242 | 0.819472 | 1.14E-52 | -1.69E-46 |
| MS.gene053581 | MS.gene59242 | 0.850253 | 1.91E-60 | -1.69E-46 |
| MS.gene053597 | MS.gene59242 | 0.809558 | 1.78E-50 | -1.69E-46 |
| MS.gene053599 | MS.gene59242 | 0.832491 | 9.17E-56 | -1.69E-46 |
| MS.gene05364 | MS.gene59242 | 0.811292 | 7.53E-51 | -1.69E-46 |
| MS.gene053678 | MS.gene59242 | 0.820855 | 5.50E-53 | -1.69E-46 |
| MS.gene054142 | MS.gene59242 | 0.804663 | 1.94E-49 | -1.69E-46 |
| MS.gene054178 | MS.gene59242 | 0.846502 | 2.09E-59 | -1.69E-46 |
| MS.gene054222 | MS.gene59242 | 0.815992 | 6.96E-52 | -1.69E-46 |
| MS.gene054403 | MS.gene59242 | 0.814051 | 1.88E-51 | -1.69E-46 |
| MS.gene054413 | MS.gene59242 | 0.824422 | 8.14E-54 | -1.69E-46 |
| MS.gene054554 | MS.gene59242 | 0.845984 | 2.89E-59 | -1.69E-46 |
| MS.gene054576 | MS.gene59242 | 0.800958 | 1.13E-48 | -1.69E-46 |
| MS.gene054584 | MS.gene59242 | 0.855639 | 5.51E-62 | -1.69E-46 |
| MS.gene054585 | MS.gene59242 | 0.818016 | 2.44E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene59242 | 0.80732 | 5.35E-50 | -1.69E-46 |
| MS.gene054709 | MS.gene59242 | 0.823747 | 1.17E-53 | -1.69E-46 |
| MS.gene054824 | MS.gene59242 | 0.839169 | 1.86E-57 | -1.69E-46 |
| MS.gene055141 | MS.gene59242 | 0.81277 | 3.59E-51 | -1.69E-46 |
| MS.gene055220 | MS.gene59242 | 0.815065 | 1.12E-51 | -1.69E-46 |
| MS.gene055221 | MS.gene59242 | 0.835019 | 2.14E-56 | -1.69E-46 |
| MS.gene055229 | MS.gene59242 | 0.801639 | 8.19E-49 | -1.69E-46 |
| MS.gene055334 | MS.gene59242 | 0.813506 | 2.47E-51 | -1.69E-46 |
| MS.gene055386 | MS.gene59242 | 0.814022 | 1.90E-51 | -1.69E-46 |
| MS.gene05538 | MS.gene59242 | 0.816928 | 4.29E-52 | -1.69E-46 |
| MS.gene055465 | MS.gene59242 | 0.819234 | 1.29E-52 | -1.69E-46 |
| MS.gene055468 | MS.gene59242 | 0.808769 | 2.63E-50 | -1.69E-46 |
| MS.gene055469 | MS.gene59242 | 0.82582 | 3.80E-54 | -1.69E-46 |
| MS.gene055513 | MS.gene59242 | 0.844544 | 7.08E-59 | -1.69E-46 |
| MS.gene055537 | MS.gene59242 | 0.836105 | 1.14E-56 | -1.69E-46 |
| MS.gene055555 | MS.gene59242 | 0.812604 | 3.90E-51 | -1.69E-46 |
| MS.gene055580 | MS.gene59242 | -0.826698 | 2.35E-54 | -1.69E-46 |
| MS.gene05574 | MS.gene59242 | 0.807524 | 4.85E-50 | -1.69E-46 |
| MS.gene055891 | MS.gene59242 | 0.811784 | 5.89E-51 | -1.69E-46 |
| MS.gene055975 | MS.gene59242 | 0.820024 | 8.53E-53 | -1.69E-46 |
| MS.gene056005 | MS.gene59242 | 0.802614 | 5.16E-49 | -1.69E-46 |
| MS.gene056043 | MS.gene59242 | -0.824245 | 8.96E-54 | -1.69E-46 |
| MS.gene056075 | MS.gene59242 | 0.811145 | 8.10E-51 | -1.69E-46 |
| MS.gene056082 | MS.gene59242 | 0.829845 | 4.10E-55 | -1.69E-46 |
| MS.gene056308 | MS.gene59242 | 0.83825 | 3.21E-57 | -1.69E-46 |
| MS.gene056507 | MS.gene59242 | 0.811137 | 8.14E-51 | -1.69E-46 |
| MS.gene056578 | MS.gene59242 | 0.830527 | 2.79E-55 | -1.69E-46 |
| MS.gene056677 | MS.gene59242 | 0.862588 | 4.56E-64 | -1.69E-46 |
| MS.gene056699 | MS.gene59242 | 0.823268 | 1.52E-53 | -1.69E-46 |
| MS.gene05686 | MS.gene59242 | 0.817211 | 3.71E-52 | -1.69E-46 |
| MS.gene057034 | MS.gene59242 | 0.800992 | 1.11E-48 | -1.69E-46 |
| MS.gene057102 | MS.gene59242 | 0.894083 | 3.44E-75 | -1.69E-46 |
| MS.gene057705 | MS.gene59242 | 0.827463 | 1.54E-54 | -1.69E-46 |
| MS.gene057919 | MS.gene59242 | 0.808469 | 3.05E-50 | -1.69E-46 |
| MS.gene058008 | MS.gene59242 | 0.806812 | 6.86E-50 | -1.69E-46 |
| MS.gene058149 | MS.gene59242 | 0.83445 | 2.98E-56 | -1.69E-46 |
| MS.gene058159 | MS.gene59242 | 0.814095 | 1.83E-51 | -1.69E-46 |
| MS.gene058261 | MS.gene59242 | 0.80783 | 4.17E-50 | -1.69E-46 |
| MS.gene058330 | MS.gene59242 | 0.840008 | 1.13E-57 | -1.69E-46 |
| MS.gene058492 | MS.gene59242 | 0.869401 | 3.18E-66 | -1.69E-46 |
| MS.gene058649 | MS.gene59242 | 0.831068 | 2.06E-55 | -1.69E-46 |
| MS.gene058668 | MS.gene59242 | 0.860465 | 2.03E-63 | -1.69E-46 |
| MS.gene058720 | MS.gene59242 | 0.821039 | 4.99E-53 | -1.69E-46 |
| MS.gene058852 | MS.gene59242 | 0.839005 | 2.05E-57 | -1.69E-46 |
| MS.gene05894 | MS.gene59242 | 0.800811 | 1.21E-48 | -1.69E-46 |
| MS.gene059146 | MS.gene59242 | 0.835592 | 1.53E-56 | -1.69E-46 |
| MS.gene059170 | MS.gene59242 | 0.841728 | 3.98E-58 | -1.69E-46 |
| MS.gene059171 | MS.gene59242 | 0.821117 | 4.79E-53 | -1.69E-46 |
| MS.gene059227 | MS.gene59242 | 0.833472 | 5.23E-56 | -1.69E-46 |
| MS.gene059774 | MS.gene59242 | 0.808186 | 3.50E-50 | -1.69E-46 |
| MS.gene059778 | MS.gene59242 | 0.840754 | 7.19E-58 | -1.69E-46 |
| MS.gene05985 | MS.gene59242 | -0.835191 | 1.94E-56 | -1.69E-46 |
| MS.gene059965 | MS.gene59242 | 0.859146 | 5.06E-63 | -1.69E-46 |
| MS.gene060365 | MS.gene59242 | 0.807958 | 3.92E-50 | -1.69E-46 |
| MS.gene060525 | MS.gene59242 | 0.816553 | 5.21E-52 | -1.69E-46 |
| MS.gene060587 | MS.gene59242 | 0.814554 | 1.45E-51 | -1.69E-46 |
| MS.gene060603 | MS.gene59242 | 0.818392 | 2.01E-52 | -1.69E-46 |
| MS.gene060697 | MS.gene59242 | 0.803926 | 2.76E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene59242 | 0.812785 | 3.56E-51 | -1.69E-46 |
| MS.gene060933 | MS.gene59242 | 0.814311 | 1.64E-51 | -1.69E-46 |
| MS.gene060937 | MS.gene59242 | 0.813521 | 2.45E-51 | -1.69E-46 |
| MS.gene061006 | MS.gene59242 | 0.818111 | 2.32E-52 | -1.69E-46 |
| MS.gene061100 | MS.gene59242 | 0.88513 | 1.06E-71 | -1.69E-46 |
| MS.gene061160 | MS.gene59242 | 0.848787 | 4.91E-60 | -1.69E-46 |
| MS.gene061188 | MS.gene59242 | 0.8215 | 3.91E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59242.t1 | MTR_4g114360 | 100.000 | 345 | 0 | 0 | 1 | 345 | 1 | 345 | 0.0 | 700 |
| MS.gene59242.t1 | MTR_3g107470 | 84.302 | 344 | 54 | 0 | 2 | 345 | 6 | 349 | 0.0 | 610 |
| MS.gene59242.t1 | MTR_0011s0320 | 83.381 | 349 | 53 | 3 | 1 | 344 | 1 | 349 | 0.0 | 588 |
| MS.gene59242.t1 | MTR_0662s0010 | 100.000 | 277 | 0 | 0 | 1 | 277 | 1 | 277 | 0.0 | 556 |
| MS.gene59242.t1 | MTR_7g110380 | 44.940 | 336 | 181 | 3 | 9 | 343 | 10 | 342 | 3.20e-104 | 311 |
| MS.gene59242.t1 | MTR_4g123900 | 50.000 | 306 | 151 | 2 | 9 | 313 | 6 | 310 | 2.61e-98 | 296 |
| MS.gene59242.t1 | MTR_4g123900 | 50.871 | 287 | 139 | 2 | 9 | 294 | 6 | 291 | 5.26e-94 | 282 |
| MS.gene59242.t1 | MTR_2g070400 | 43.302 | 321 | 179 | 3 | 13 | 331 | 10 | 329 | 1.92e-85 | 261 |
| MS.gene59242.t1 | MTR_3g070000 | 32.441 | 299 | 182 | 6 | 18 | 305 | 29 | 318 | 4.46e-33 | 125 |
| MS.gene59242.t1 | MTR_8g090130 | 34.007 | 297 | 180 | 9 | 18 | 305 | 16 | 305 | 1.63e-32 | 123 |
| MS.gene59242.t1 | MTR_5g081710 | 32.558 | 301 | 183 | 6 | 16 | 305 | 11 | 302 | 3.65e-32 | 122 |
| MS.gene59242.t1 | MTR_3g462070 | 30.693 | 303 | 194 | 6 | 12 | 305 | 8 | 303 | 5.12e-31 | 119 |
| MS.gene59242.t1 | MTR_1g030320 | 23.684 | 342 | 244 | 7 | 3 | 332 | 1 | 337 | 1.01e-27 | 111 |
| MS.gene59242.t1 | MTR_3g072380 | 23.708 | 329 | 239 | 6 | 11 | 332 | 12 | 335 | 2.66e-27 | 110 |
| MS.gene59242.t1 | MTR_4g018760 | 30.928 | 291 | 191 | 5 | 21 | 305 | 20 | 306 | 3.70e-27 | 109 |
| MS.gene59242.t1 | MTR_8g016090 | 27.326 | 344 | 235 | 9 | 8 | 338 | 163 | 504 | 2.48e-26 | 109 |
| MS.gene59242.t1 | MTR_4g101860 | 28.947 | 304 | 202 | 7 | 18 | 313 | 57 | 354 | 9.83e-25 | 103 |
| MS.gene59242.t1 | MTR_8g016090 | 28.302 | 265 | 179 | 6 | 84 | 338 | 191 | 454 | 6.30e-20 | 90.9 |
| MS.gene59242.t1 | MTR_4g058860 | 26.957 | 345 | 208 | 15 | 25 | 345 | 22 | 346 | 2.35e-18 | 85.1 |
| MS.gene59242.t1 | MTR_2g094640 | 25.449 | 334 | 213 | 13 | 25 | 344 | 22 | 333 | 5.46e-18 | 84.3 |
| MS.gene59242.t1 | MTR_3g094270 | 25.723 | 311 | 186 | 12 | 42 | 335 | 37 | 319 | 5.41e-15 | 75.5 |
| MS.gene59242.t1 | MTR_3g094260 | 25.161 | 310 | 189 | 10 | 42 | 335 | 37 | 319 | 4.57e-14 | 72.8 |
| MS.gene59242.t1 | MTR_3g072380 | 24.859 | 177 | 129 | 3 | 11 | 186 | 12 | 185 | 8.13e-13 | 67.8 |
| MS.gene59242.t1 | MTR_2g038410 | 24.768 | 323 | 217 | 9 | 28 | 345 | 69 | 370 | 2.82e-12 | 67.4 |
| MS.gene59242.t1 | MTR_8g016090 | 25.275 | 182 | 132 | 3 | 8 | 186 | 163 | 343 | 8.22e-12 | 66.2 |
| MS.gene59242.t1 | MTR_6g005480 | 24.920 | 313 | 215 | 8 | 4 | 305 | 104 | 407 | 2.44e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59242.t1 | AT5G25400 | 81.686 | 344 | 63 | 0 | 2 | 345 | 6 | 349 | 0.0 | 598 |
| MS.gene59242.t1 | AT4G32390 | 82.029 | 345 | 61 | 1 | 2 | 345 | 6 | 350 | 0.0 | 593 |
| MS.gene59242.t1 | AT2G25520 | 82.558 | 344 | 58 | 1 | 2 | 345 | 6 | 347 | 0.0 | 593 |
| MS.gene59242.t1 | AT5G11230 | 79.710 | 345 | 69 | 1 | 2 | 345 | 6 | 350 | 0.0 | 569 |
| MS.gene59242.t1 | AT3G17430 | 45.427 | 328 | 177 | 2 | 9 | 335 | 7 | 333 | 4.66e-98 | 295 |
| MS.gene59242.t1 | AT3G17430 | 45.427 | 328 | 177 | 2 | 9 | 335 | 7 | 333 | 4.66e-98 | 295 |
| MS.gene59242.t1 | AT1G48230 | 46.334 | 341 | 169 | 3 | 9 | 336 | 7 | 346 | 1.35e-96 | 291 |
| MS.gene59242.t1 | AT3G14410 | 42.771 | 332 | 187 | 3 | 4 | 333 | 5 | 335 | 1.28e-82 | 254 |
| MS.gene59242.t1 | AT1G53660 | 41.390 | 331 | 183 | 6 | 6 | 334 | 9 | 330 | 2.30e-82 | 253 |
| MS.gene59242.t1 | AT1G53660 | 41.390 | 331 | 183 | 6 | 6 | 334 | 27 | 348 | 4.49e-82 | 253 |
| MS.gene59242.t1 | AT1G53660 | 42.434 | 304 | 164 | 6 | 33 | 334 | 2 | 296 | 2.09e-78 | 242 |
| MS.gene59242.t1 | AT1G48230 | 44.891 | 274 | 137 | 3 | 76 | 336 | 1 | 273 | 1.91e-74 | 232 |
| MS.gene59242.t1 | AT1G53660 | 42.449 | 245 | 131 | 5 | 91 | 334 | 1 | 236 | 1.77e-58 | 189 |
| MS.gene59242.t1 | AT1G53660 | 41.294 | 201 | 117 | 1 | 5 | 204 | 26 | 226 | 6.01e-51 | 170 |
| MS.gene59242.t1 | AT1G21870 | 23.810 | 315 | 230 | 5 | 21 | 330 | 22 | 331 | 1.26e-30 | 119 |
| MS.gene59242.t1 | AT3G11320 | 31.757 | 296 | 188 | 5 | 18 | 305 | 15 | 304 | 1.58e-30 | 118 |
| MS.gene59242.t1 | AT5G05820 | 32.095 | 296 | 187 | 5 | 18 | 305 | 15 | 304 | 4.85e-30 | 117 |
| MS.gene59242.t1 | AT1G77610 | 24.383 | 324 | 232 | 6 | 21 | 336 | 16 | 334 | 4.41e-29 | 115 |
| MS.gene59242.t1 | AT3G10290 | 30.392 | 306 | 197 | 8 | 9 | 305 | 53 | 351 | 4.15e-27 | 110 |
| MS.gene59242.t1 | AT5G04160 | 30.255 | 314 | 199 | 8 | 3 | 305 | 1 | 305 | 2.82e-26 | 106 |
| MS.gene59242.t1 | AT1G12500 | 28.065 | 310 | 211 | 6 | 3 | 305 | 48 | 352 | 1.26e-23 | 100 |
| MS.gene59242.t1 | AT1G06470 | 25.000 | 336 | 232 | 9 | 17 | 335 | 78 | 410 | 6.48e-23 | 99.0 |
| MS.gene59242.t1 | AT1G06470 | 25.000 | 336 | 232 | 9 | 17 | 335 | 78 | 410 | 6.48e-23 | 99.0 |
| MS.gene59242.t1 | AT1G06470 | 25.000 | 336 | 232 | 9 | 17 | 335 | 78 | 410 | 6.48e-23 | 99.0 |
| MS.gene59242.t1 | AT1G06470 | 25.000 | 336 | 232 | 9 | 17 | 335 | 78 | 410 | 6.48e-23 | 99.0 |
| MS.gene59242.t1 | AT2G28315 | 27.187 | 320 | 199 | 13 | 25 | 333 | 22 | 318 | 7.64e-19 | 86.7 |
| MS.gene59242.t1 | AT2G28315 | 28.276 | 290 | 181 | 12 | 25 | 303 | 22 | 295 | 2.20e-17 | 82.0 |
| MS.gene59242.t1 | AT2G30460 | 27.941 | 272 | 165 | 9 | 83 | 336 | 73 | 331 | 9.14e-15 | 74.7 |
| MS.gene59242.t1 | AT2G30460 | 27.941 | 272 | 165 | 9 | 83 | 336 | 73 | 331 | 9.14e-15 | 74.7 |
| MS.gene59242.t1 | AT2G30460 | 27.941 | 272 | 165 | 9 | 83 | 336 | 52 | 310 | 9.74e-15 | 74.7 |
| MS.gene59242.t1 | AT2G30460 | 27.941 | 272 | 165 | 9 | 83 | 336 | 52 | 310 | 9.74e-15 | 74.7 |
| MS.gene59242.t1 | AT2G30460 | 27.941 | 272 | 165 | 9 | 83 | 336 | 52 | 310 | 9.74e-15 | 74.7 |
| MS.gene59242.t1 | AT1G06890 | 25.397 | 315 | 195 | 11 | 42 | 336 | 37 | 331 | 4.21e-13 | 70.1 |
| MS.gene59242.t1 | AT1G06890 | 25.397 | 315 | 195 | 11 | 42 | 336 | 37 | 331 | 4.31e-13 | 69.7 |
| MS.gene59242.t1 | AT1G06890 | 25.397 | 315 | 195 | 11 | 42 | 336 | 37 | 331 | 4.66e-13 | 69.7 |
| MS.gene59242.t1 | AT1G06890 | 25.397 | 315 | 195 | 11 | 42 | 336 | 37 | 331 | 4.66e-13 | 69.7 |
| MS.gene59242.t1 | AT5G33320 | 24.272 | 309 | 220 | 7 | 4 | 305 | 98 | 399 | 8.23e-11 | 63.2 |
Find 64 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGTGTTACACTTCAGCTTA+TGG | 0.214354 | 8.1:+12379660 | MS.gene59242:CDS |
| CCGATTAATTTGATTGGTTA+TGG | 0.225210 | 8.1:+12380027 | MS.gene59242:CDS |
| GGTGTTGCTGTTGCTGCTTA+TGG | 0.242108 | 8.1:+12379616 | MS.gene59242:CDS |
| ATTCTCGTGGTCGGTGATTA+AGG | 0.249502 | 8.1:+12379993 | MS.gene59242:CDS |
| GTGTTGCTGTTGCTGCTTAT+GGG | 0.272371 | 8.1:+12379617 | MS.gene59242:CDS |
| CACTTTACTCGCTTTCGTTA+TGG | 0.286530 | 8.1:+12379443 | MS.gene59242:CDS |
| CGATTAATTTGATTGGTTAT+GGG | 0.330326 | 8.1:+12380028 | MS.gene59242:CDS |
| TTCGAAGTTGCAGGCTCTTA+AGG | 0.341248 | 8.1:+12380083 | MS.gene59242:CDS |
| GCTTTGACTATGAATGTTGC+TGG | 0.346970 | 8.1:+12379943 | MS.gene59242:CDS |
| TAGATAAATATACGCAGAAT+TGG | 0.353850 | 8.1:-12379470 | None:intergenic |
| GTTACACCGATTAATTTGAT+TGG | 0.366012 | 8.1:+12380021 | MS.gene59242:CDS |
| GGATAACTCAAGTTTCCATT+TGG | 0.385544 | 8.1:+12379840 | MS.gene59242:CDS |
| AAGAGAAATGGAAATCATAT+TGG | 0.391631 | 8.1:-12379593 | None:intergenic |
| TTCCGATGGCGTTGTGAAGA+AGG | 0.398342 | 8.1:+12379183 | MS.gene59242:CDS |
| GGGAAGCTAAATTTGATACT+TGG | 0.404187 | 8.1:+12379638 | MS.gene59242:CDS |
| TTATAATCATTCGAAGTTGC+AGG | 0.406175 | 8.1:+12380074 | MS.gene59242:CDS |
| GAATGTTGCTGGGGTTGTTA+AGG | 0.411142 | 8.1:+12379954 | MS.gene59242:CDS |
| AGATCGAGTTGAATCAGTTC+TGG | 0.413437 | 8.1:-12380203 | None:intergenic |
| AATATGATTTCCATTTCTCT+TGG | 0.417528 | 8.1:+12379595 | MS.gene59242:CDS |
| CATACACCTACGTCGCAATC+TGG | 0.421498 | 8.1:+12379215 | MS.gene59242:CDS |
| CCTGTTGCTGTTTATTCGAT+TGG | 0.427774 | 8.1:+12379529 | MS.gene59242:CDS |
| ATGTAATACAACGAAGTAAT+CGG | 0.430025 | 8.1:-12379754 | None:intergenic |
| AACAGCAACACCAAGAGAAA+TGG | 0.430794 | 8.1:-12379605 | None:intergenic |
| CCATAACCAATCAAATTAAT+CGG | 0.432294 | 8.1:-12380027 | None:intergenic |
| TTACATTGCGCCATGTTGTT+TGG | 0.446571 | 8.1:+12379771 | MS.gene59242:CDS |
| TGAATCATGGTTAGAGAGAT+CGG | 0.453928 | 8.1:-12379310 | None:intergenic |
| CTTTGACTATGAATGTTGCT+GGG | 0.457141 | 8.1:+12379944 | MS.gene59242:CDS |
| CTCAAATCTGTTGTTCCAAT+CGG | 0.464601 | 8.1:+12379418 | MS.gene59242:CDS |
| AGATCGCGTGACATTGAAAC+AGG | 0.469171 | 8.1:-12379391 | None:intergenic |
| GGAAGCTAAATTTGATACTT+GGG | 0.472356 | 8.1:+12379639 | MS.gene59242:CDS |
| TAGATCGTAAGATGTACAAT+TGG | 0.478800 | 8.1:+12379281 | MS.gene59242:CDS |
| TTGAGCCTTCTTCTGCGTCT+CGG | 0.479012 | 8.1:-12380109 | None:intergenic |
| CCAATCGAATAAACAGCAAC+AGG | 0.480862 | 8.1:-12379529 | None:intergenic |
| TAATTTGATTGGTTATGGGT+TGG | 0.488621 | 8.1:+12380032 | MS.gene59242:CDS |
| TTGCTGGGGTTGTTAAGGAT+TGG | 0.496578 | 8.1:+12379959 | MS.gene59242:CDS |
| GTATTTGTTGTAAACGATAA+CGG | 0.498137 | 8.1:-12379254 | None:intergenic |
| AGCGAGTAAAGTGCACCGAT+TGG | 0.499200 | 8.1:-12379433 | None:intergenic |
| TGAAGAGGCTGGAAGGTTGT+TGG | 0.507877 | 8.1:+12380140 | MS.gene59242:CDS |
| GGCTTCCGAGACGCAGAAGA+AGG | 0.521970 | 8.1:+12380104 | MS.gene59242:CDS |
| AGGTTGTTGGAACAGAGAGA+TGG | 0.527055 | 8.1:+12380153 | MS.gene59242:CDS |
| CAGAGAGATGGAGAAGGGAC+TGG | 0.531231 | 8.1:+12380165 | MS.gene59242:CDS |
| GAATCATGGTTAGAGAGATC+GGG | 0.533528 | 8.1:-12379309 | None:intergenic |
| CAACAGAGTGATGAAGAGGC+TGG | 0.548342 | 8.1:+12380129 | MS.gene59242:CDS |
| GTTGATTGCATTCTCGTGGT+CGG | 0.553496 | 8.1:+12379984 | MS.gene59242:CDS |
| TGTTGAGTATCCTTCGTTGA+GGG | 0.554979 | 8.1:+12379819 | MS.gene59242:CDS |
| GGCTCAACAGAGTGATGAAG+AGG | 0.559642 | 8.1:+12380125 | MS.gene59242:CDS |
| TTGTTGAGTATCCTTCGTTG+AGG | 0.563149 | 8.1:+12379818 | MS.gene59242:CDS |
| ATGGTTAGAGAGATCGGGTA+AGG | 0.564381 | 8.1:-12379304 | None:intergenic |
| TGTTGCTGTTGCTGCTTATG+GGG | 0.565614 | 8.1:+12379618 | MS.gene59242:CDS |
| GAGATGGAGAAGGGACTGGA+AGG | 0.571557 | 8.1:+12380169 | MS.gene59242:CDS |
| AACCTTCTTCACAACGCCAT+CGG | 0.572106 | 8.1:-12379185 | None:intergenic |
| CTCTCTAACCATGATTCACA+TGG | 0.588163 | 8.1:+12379315 | MS.gene59242:CDS |
| TTTGTTGGTTGGGAAGACGT+CGG | 0.592329 | 8.1:+12379921 | MS.gene59242:CDS |
| TTGGAACAGAGAGATGGAGA+AGG | 0.602800 | 8.1:+12380159 | MS.gene59242:CDS |
| AGAGTGATGAAGAGGCTGGA+AGG | 0.603959 | 8.1:+12380133 | MS.gene59242:CDS |
| GGTTGTTGATTGCATTCTCG+TGG | 0.604485 | 8.1:+12379980 | MS.gene59242:CDS |
| GAAGATCCAGATTGCGACGT+AGG | 0.612548 | 8.1:-12379221 | None:intergenic |
| GAAGCTAAATTTGATACTTG+GGG | 0.628264 | 8.1:+12379640 | MS.gene59242:CDS |
| TGGAACAGAGAGATGGAGAA+GGG | 0.630504 | 8.1:+12380160 | MS.gene59242:CDS |
| GGATACTCAACAATAAGCCA+AGG | 0.631347 | 8.1:-12379808 | None:intergenic |
| AAACGATAACGGTGAAGCTG+AGG | 0.632551 | 8.1:-12379243 | None:intergenic |
| TTGCGACGTAGGTGTATGAG+AGG | 0.648256 | 8.1:-12379210 | None:intergenic |
| TTTGACTATGAATGTTGCTG+GGG | 0.655153 | 8.1:+12379945 | MS.gene59242:CDS |
| CTTGAGTTATCCCTCAACGA+AGG | 0.699678 | 8.1:-12379829 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAGAGAAATGGAAATCATAT+TGG | - | chr8.1:12379596-12379615 | None:intergenic | 25.0% |
| ! | AATATGATTTCCATTTCTCT+TGG | + | chr8.1:12379595-12379614 | MS.gene59242:CDS | 25.0% |
| ! | ATGTAATACAACGAAGTAAT+CGG | - | chr8.1:12379757-12379776 | None:intergenic | 25.0% |
| ! | CCATAACCAATCAAATTAAT+CGG | - | chr8.1:12380030-12380049 | None:intergenic | 25.0% |
| ! | TAGATAAATATACGCAGAAT+TGG | - | chr8.1:12379473-12379492 | None:intergenic | 25.0% |
| !! | CGATTAATTTGATTGGTTAT+GGG | + | chr8.1:12380028-12380047 | MS.gene59242:CDS | 25.0% |
| !!! | AGGTTTTAAGAATGAAACTA+TGG | + | chr8.1:12379570-12379589 | MS.gene59242:CDS | 25.0% |
| !!! | GTATTTGTTGTAAACGATAA+CGG | - | chr8.1:12379257-12379276 | None:intergenic | 25.0% |
| GAAGCTAAATTTGATACTTG+GGG | + | chr8.1:12379640-12379659 | MS.gene59242:CDS | 30.0% | |
| GGAAGCTAAATTTGATACTT+GGG | + | chr8.1:12379639-12379658 | MS.gene59242:CDS | 30.0% | |
| TAGATCGTAAGATGTACAAT+TGG | + | chr8.1:12379281-12379300 | MS.gene59242:CDS | 30.0% | |
| TTATAATCATTCGAAGTTGC+AGG | + | chr8.1:12380074-12380093 | MS.gene59242:CDS | 30.0% | |
| ! | AGATTTTGCTTAATTCGAAG+GGG | + | chr8.1:12379719-12379738 | MS.gene59242:CDS | 30.0% |
| ! | ATTTGGATTTCGCGATTTTT+GGG | + | chr8.1:12379857-12379876 | MS.gene59242:CDS | 30.0% |
| ! | CAGATTTTGCTTAATTCGAA+GGG | + | chr8.1:12379718-12379737 | MS.gene59242:CDS | 30.0% |
| ! | CCGATTAATTTGATTGGTTA+TGG | + | chr8.1:12380027-12380046 | MS.gene59242:CDS | 30.0% |
| ! | GTTACACCGATTAATTTGAT+TGG | + | chr8.1:12380021-12380040 | MS.gene59242:CDS | 30.0% |
| ! | TAATTTGATTGGTTATGGGT+TGG | + | chr8.1:12380032-12380051 | MS.gene59242:CDS | 30.0% |
| ! | TCAGATTTTGCTTAATTCGA+AGG | + | chr8.1:12379717-12379736 | MS.gene59242:CDS | 30.0% |
| !!! | GGTGTTTTGTTTAAGAAAGA+AGG | + | chr8.1:12379550-12379569 | MS.gene59242:CDS | 30.0% |
| ACAAAAAGCCATGTGAATCA+TGG | - | chr8.1:12379326-12379345 | None:intergenic | 35.0% | |
| CAAAAATCGCGAAATCCAAA+TGG | - | chr8.1:12379858-12379877 | None:intergenic | 35.0% | |
| CTCAAATCTGTTGTTCCAAT+CGG | + | chr8.1:12379418-12379437 | MS.gene59242:CDS | 35.0% | |
| CTTTGACTATGAATGTTGCT+GGG | + | chr8.1:12379944-12379963 | MS.gene59242:CDS | 35.0% | |
| GACAAAAACACCAAACAACA+TGG | - | chr8.1:12379784-12379803 | None:intergenic | 35.0% | |
| GGATAACTCAAGTTTCCATT+TGG | + | chr8.1:12379840-12379859 | MS.gene59242:CDS | 35.0% | |
| GGGAAGCTAAATTTGATACT+TGG | + | chr8.1:12379638-12379657 | MS.gene59242:CDS | 35.0% | |
| TGAATCATGGTTAGAGAGAT+CGG | - | chr8.1:12379313-12379332 | None:intergenic | 35.0% | |
| TTTGACTATGAATGTTGCTG+GGG | + | chr8.1:12379945-12379964 | MS.gene59242:CDS | 35.0% | |
| ! | CATTTGGATTTCGCGATTTT+TGG | + | chr8.1:12379856-12379875 | MS.gene59242:CDS | 35.0% |
| AACAGCAACACCAAGAGAAA+TGG | - | chr8.1:12379608-12379627 | None:intergenic | 40.0% | |
| CACTTTACTCGCTTTCGTTA+TGG | + | chr8.1:12379443-12379462 | MS.gene59242:CDS | 40.0% | |
| CCAATCGAATAAACAGCAAC+AGG | - | chr8.1:12379532-12379551 | None:intergenic | 40.0% | |
| CTCTCTAACCATGATTCACA+TGG | + | chr8.1:12379315-12379334 | MS.gene59242:CDS | 40.0% | |
| CTTCCCAACCAACAAAAACA+CGG | - | chr8.1:12379917-12379936 | None:intergenic | 40.0% | |
| GAATCATGGTTAGAGAGATC+GGG | - | chr8.1:12379312-12379331 | None:intergenic | 40.0% | |
| GCTTTGACTATGAATGTTGC+TGG | + | chr8.1:12379943-12379962 | MS.gene59242:CDS | 40.0% | |
| GGATACTCAACAATAAGCCA+AGG | - | chr8.1:12379811-12379830 | None:intergenic | 40.0% | |
| TGTTGAGTATCCTTCGTTGA+GGG | + | chr8.1:12379819-12379838 | MS.gene59242:CDS | 40.0% | |
| TTACATTGCGCCATGTTGTT+TGG | + | chr8.1:12379771-12379790 | MS.gene59242:CDS | 40.0% | |
| TTGTTGAGTATCCTTCGTTG+AGG | + | chr8.1:12379818-12379837 | MS.gene59242:CDS | 40.0% | |
| !! | CCTGTTGCTGTTTATTCGAT+TGG | + | chr8.1:12379529-12379548 | MS.gene59242:CDS | 40.0% |
| !! | GAATCTTGCCGTGTTTTTGT+TGG | + | chr8.1:12379906-12379925 | MS.gene59242:CDS | 40.0% |
| !! | TGGTGTTTTTGTCTGTTCCT+TGG | + | chr8.1:12379791-12379810 | MS.gene59242:CDS | 40.0% |
| !! | TTGCCGTGTTTTTGTTGGTT+GGG | + | chr8.1:12379911-12379930 | MS.gene59242:CDS | 40.0% |
| !!! | TGCTTTTGAAGCAACACGTT+TGG | + | chr8.1:12379687-12379706 | MS.gene59242:CDS | 40.0% |
| AACCTTCTTCACAACGCCAT+CGG | - | chr8.1:12379188-12379207 | None:intergenic | 45.0% | |
| AGATCGCGTGACATTGAAAC+AGG | - | chr8.1:12379394-12379413 | None:intergenic | 45.0% | |
| AGGTTGTTGGAACAGAGAGA+TGG | + | chr8.1:12380153-12380172 | MS.gene59242:CDS | 45.0% | |
| ATGGTTAGAGAGATCGGGTA+AGG | - | chr8.1:12379307-12379326 | None:intergenic | 45.0% | |
| ATTCTCGTGGTCGGTGATTA+AGG | + | chr8.1:12379993-12380012 | MS.gene59242:CDS | 45.0% | |
| CTTGAGTTATCCCTCAACGA+AGG | - | chr8.1:12379832-12379851 | None:intergenic | 45.0% | |
| GAATGTTGCTGGGGTTGTTA+AGG | + | chr8.1:12379954-12379973 | MS.gene59242:CDS | 45.0% | |
| GTTGATTGCATTCTCGTGGT+CGG | + | chr8.1:12379984-12380003 | MS.gene59242:CDS | 45.0% | |
| TGGAACAGAGAGATGGAGAA+GGG | + | chr8.1:12380160-12380179 | MS.gene59242:CDS | 45.0% | |
| TTCGAAGTTGCAGGCTCTTA+AGG | + | chr8.1:12380083-12380102 | MS.gene59242:CDS | 45.0% | |
| TTGCTGGGGTTGTTAAGGAT+TGG | + | chr8.1:12379959-12379978 | MS.gene59242:CDS | 45.0% | |
| TTGGAACAGAGAGATGGAGA+AGG | + | chr8.1:12380159-12380178 | MS.gene59242:CDS | 45.0% | |
| ! | AAACGATAACGGTGAAGCTG+AGG | - | chr8.1:12379246-12379265 | None:intergenic | 45.0% |
| ! | GGGTGTTACACTTCAGCTTA+TGG | + | chr8.1:12379660-12379679 | MS.gene59242:CDS | 45.0% |
| ! | GGTTGTTGATTGCATTCTCG+TGG | + | chr8.1:12379980-12379999 | MS.gene59242:CDS | 45.0% |
| ! | GTGTTGCTGTTGCTGCTTAT+GGG | + | chr8.1:12379617-12379636 | MS.gene59242:CDS | 45.0% |
| ! | TGTTGCTGTTGCTGCTTATG+GGG | + | chr8.1:12379618-12379637 | MS.gene59242:CDS | 45.0% |
| ! | TTTGTTGGTTGGGAAGACGT+CGG | + | chr8.1:12379921-12379940 | MS.gene59242:CDS | 45.0% |
| !! | CTTGCCGTGTTTTTGTTGGT+TGG | + | chr8.1:12379910-12379929 | MS.gene59242:CDS | 45.0% |
| !!! | GGTTATGGGTTGGCGTTTTT+GGG | + | chr8.1:12380042-12380061 | MS.gene59242:CDS | 45.0% |
| !!! | GTTATGGGTTGGCGTTTTTG+GGG | + | chr8.1:12380043-12380062 | MS.gene59242:CDS | 45.0% |
| !!! | TGGTTATGGGTTGGCGTTTT+TGG | + | chr8.1:12380041-12380060 | MS.gene59242:CDS | 45.0% |
| !!! | TTATGGGTTGGCGTTTTTGG+GGG | + | chr8.1:12380044-12380063 | MS.gene59242:CDS | 45.0% |
| AGAGTGATGAAGAGGCTGGA+AGG | + | chr8.1:12380133-12380152 | MS.gene59242:CDS | 50.0% | |
| CAACAGAGTGATGAAGAGGC+TGG | + | chr8.1:12380129-12380148 | MS.gene59242:CDS | 50.0% | |
| CATACACCTACGTCGCAATC+TGG | + | chr8.1:12379215-12379234 | MS.gene59242:CDS | 50.0% | |
| GAAGATCCAGATTGCGACGT+AGG | - | chr8.1:12379224-12379243 | None:intergenic | 50.0% | |
| GGCTCAACAGAGTGATGAAG+AGG | + | chr8.1:12380125-12380144 | MS.gene59242:CDS | 50.0% | |
| TGAAGAGGCTGGAAGGTTGT+TGG | + | chr8.1:12380140-12380159 | MS.gene59242:CDS | 50.0% | |
| TTCCGATGGCGTTGTGAAGA+AGG | + | chr8.1:12379183-12379202 | MS.gene59242:CDS | 50.0% | |
| TTGAGCCTTCTTCTGCGTCT+CGG | - | chr8.1:12380112-12380131 | None:intergenic | 50.0% | |
| TTGCGACGTAGGTGTATGAG+AGG | - | chr8.1:12379213-12379232 | None:intergenic | 50.0% | |
| ! | AGCGAGTAAAGTGCACCGAT+TGG | - | chr8.1:12379436-12379455 | None:intergenic | 50.0% |
| !! | GGTGTTGCTGTTGCTGCTTA+TGG | + | chr8.1:12379616-12379635 | MS.gene59242:CDS | 50.0% |
| CAGAGAGATGGAGAAGGGAC+TGG | + | chr8.1:12380165-12380184 | MS.gene59242:CDS | 55.0% | |
| GAGATGGAGAAGGGACTGGA+AGG | + | chr8.1:12380169-12380188 | MS.gene59242:CDS | 55.0% | |
| GGCTTCCGAGACGCAGAAGA+AGG | + | chr8.1:12380104-12380123 | MS.gene59242:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 12379175 | 12380212 | 12379175 | ID=MS.gene59242 |
| chr8.1 | mRNA | 12379175 | 12380212 | 12379175 | ID=MS.gene59242.t1;Parent=MS.gene59242 |
| chr8.1 | exon | 12379175 | 12380212 | 12379175 | ID=MS.gene59242.t1.exon1;Parent=MS.gene59242.t1 |
| chr8.1 | CDS | 12379175 | 12380212 | 12379175 | ID=cds.MS.gene59242.t1;Parent=MS.gene59242.t1 |
| Gene Sequence |
| Protein sequence |
