Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25785.t1 | XP_004502057.1 | 90.1 | 223 | 21 | 1 | 1 | 222 | 1 | 223 | 7.10E-104 | 386.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25785.t1 | Q9MAP3 | 73.4 | 229 | 46 | 4 | 1 | 222 | 1 | 221 | 1.4e-79 | 297.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25785.t1 | A0A1S2YAR9 | 90.1 | 223 | 21 | 1 | 1 | 222 | 1 | 223 | 5.1e-104 | 386.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049137 | MS.gene25785 | 0.831414 | 1.69E-55 | -1.69E-46 |
MS.gene049171 | MS.gene25785 | 0.82307 | 1.69E-53 | -1.69E-46 |
MS.gene049217 | MS.gene25785 | 0.851137 | 1.08E-60 | -1.69E-46 |
MS.gene049222 | MS.gene25785 | 0.847069 | 1.46E-59 | -1.69E-46 |
MS.gene049285 | MS.gene25785 | 0.8575 | 1.56E-62 | -1.69E-46 |
MS.gene049320 | MS.gene25785 | 0.843006 | 1.83E-58 | -1.69E-46 |
MS.gene049427 | MS.gene25785 | 0.887738 | 1.10E-72 | -1.69E-46 |
MS.gene049609 | MS.gene25785 | 0.834923 | 2.26E-56 | -1.69E-46 |
MS.gene049614 | MS.gene25785 | 0.859541 | 3.85E-63 | -1.69E-46 |
MS.gene049615 | MS.gene25785 | 0.817535 | 3.14E-52 | -1.69E-46 |
MS.gene049627 | MS.gene25785 | 0.85721 | 1.91E-62 | -1.69E-46 |
MS.gene049805 | MS.gene25785 | 0.837905 | 3.94E-57 | -1.69E-46 |
MS.gene050163 | MS.gene25785 | 0.889324 | 2.68E-73 | -1.69E-46 |
MS.gene050165 | MS.gene25785 | 0.856708 | 2.68E-62 | -1.69E-46 |
MS.gene050333 | MS.gene25785 | 0.841575 | 4.37E-58 | -1.69E-46 |
MS.gene050353 | MS.gene25785 | -0.800575 | 1.35E-48 | -1.69E-46 |
MS.gene050504 | MS.gene25785 | 0.839435 | 1.59E-57 | -1.69E-46 |
MS.gene050518 | MS.gene25785 | 0.839817 | 1.26E-57 | -1.69E-46 |
MS.gene050538 | MS.gene25785 | 0.807874 | 4.08E-50 | -1.69E-46 |
MS.gene050577 | MS.gene25785 | 0.807221 | 5.62E-50 | -1.69E-46 |
MS.gene050593 | MS.gene25785 | 0.852749 | 3.76E-61 | -1.69E-46 |
MS.gene050612 | MS.gene25785 | 0.810046 | 1.40E-50 | -1.69E-46 |
MS.gene050675 | MS.gene25785 | 0.830313 | 3.15E-55 | -1.69E-46 |
MS.gene050699 | MS.gene25785 | 0.846534 | 2.04E-59 | -1.69E-46 |
MS.gene050747 | MS.gene25785 | 0.854956 | 8.71E-62 | -1.69E-46 |
MS.gene050767 | MS.gene25785 | 0.854698 | 1.04E-61 | -1.69E-46 |
MS.gene050770 | MS.gene25785 | 0.856647 | 2.79E-62 | -1.69E-46 |
MS.gene050772 | MS.gene25785 | 0.855517 | 5.98E-62 | -1.69E-46 |
MS.gene050781 | MS.gene25785 | 0.84801 | 8.05E-60 | -1.69E-46 |
MS.gene050783 | MS.gene25785 | 0.843948 | 1.02E-58 | -1.69E-46 |
MS.gene050950 | MS.gene25785 | 0.863422 | 2.52E-64 | -1.69E-46 |
MS.gene050986 | MS.gene25785 | 0.808183 | 3.51E-50 | -1.69E-46 |
MS.gene05100 | MS.gene25785 | 0.880389 | 5.71E-70 | -1.69E-46 |
MS.gene05101 | MS.gene25785 | 0.847077 | 1.45E-59 | -1.69E-46 |
MS.gene05105 | MS.gene25785 | 0.807723 | 4.40E-50 | -1.69E-46 |
MS.gene051387 | MS.gene25785 | 0.864081 | 1.57E-64 | -1.69E-46 |
MS.gene051551 | MS.gene25785 | 0.819909 | 9.07E-53 | -1.69E-46 |
MS.gene051666 | MS.gene25785 | 0.828216 | 1.02E-54 | -1.69E-46 |
MS.gene051694 | MS.gene25785 | 0.858319 | 8.94E-63 | -1.69E-46 |
MS.gene051810 | MS.gene25785 | 0.823016 | 1.74E-53 | -1.69E-46 |
MS.gene051858 | MS.gene25785 | 0.838871 | 2.22E-57 | -1.69E-46 |
MS.gene052271 | MS.gene25785 | 0.870594 | 1.30E-66 | -1.69E-46 |
MS.gene052310 | MS.gene25785 | 0.802536 | 5.36E-49 | -1.69E-46 |
MS.gene052326 | MS.gene25785 | 0.815917 | 7.23E-52 | -1.69E-46 |
MS.gene052379 | MS.gene25785 | 0.845212 | 4.67E-59 | -1.69E-46 |
MS.gene052421 | MS.gene25785 | 0.815116 | 1.09E-51 | -1.69E-46 |
MS.gene052505 | MS.gene25785 | 0.80017 | 1.63E-48 | -1.69E-46 |
MS.gene052615 | MS.gene25785 | 0.845223 | 4.64E-59 | -1.69E-46 |
MS.gene052670 | MS.gene25785 | 0.817555 | 3.10E-52 | -1.69E-46 |
MS.gene052916 | MS.gene25785 | 0.800649 | 1.31E-48 | -1.69E-46 |
MS.gene053009 | MS.gene25785 | 0.821551 | 3.80E-53 | -1.69E-46 |
MS.gene053104 | MS.gene25785 | 0.805386 | 1.37E-49 | -1.69E-46 |
MS.gene053107 | MS.gene25785 | 0.82739 | 1.61E-54 | -1.69E-46 |
MS.gene053203 | MS.gene25785 | 0.806342 | 8.62E-50 | -1.69E-46 |
MS.gene053207 | MS.gene25785 | 0.824685 | 7.06E-54 | -1.69E-46 |
MS.gene053213 | MS.gene25785 | 0.888964 | 3.70E-73 | -1.69E-46 |
MS.gene053286 | MS.gene25785 | 0.879443 | 1.24E-69 | -1.69E-46 |
MS.gene053322 | MS.gene25785 | 0.899002 | 3.05E-77 | -1.69E-46 |
MS.gene053436 | MS.gene25785 | 0.828808 | 7.32E-55 | -1.69E-46 |
MS.gene053574 | MS.gene25785 | 0.850142 | 2.06E-60 | -1.69E-46 |
MS.gene053579 | MS.gene25785 | 0.804818 | 1.80E-49 | -1.69E-46 |
MS.gene053632 | MS.gene25785 | 0.819225 | 1.30E-52 | -1.69E-46 |
MS.gene054376 | MS.gene25785 | 0.85836 | 8.69E-63 | -1.69E-46 |
MS.gene054408 | MS.gene25785 | 0.829631 | 4.62E-55 | -1.69E-46 |
MS.gene054595 | MS.gene25785 | 0.809783 | 1.60E-50 | -1.69E-46 |
MS.gene054600 | MS.gene25785 | 0.81625 | 6.09E-52 | -1.69E-46 |
MS.gene054642 | MS.gene25785 | 0.85864 | 7.17E-63 | -1.69E-46 |
MS.gene054802 | MS.gene25785 | 0.877161 | 7.84E-69 | -1.69E-46 |
MS.gene054803 | MS.gene25785 | 0.875105 | 4.01E-68 | -1.69E-46 |
MS.gene054804 | MS.gene25785 | 0.876814 | 1.04E-68 | -1.69E-46 |
MS.gene054927 | MS.gene25785 | 0.813996 | 1.93E-51 | -1.69E-46 |
MS.gene054954 | MS.gene25785 | 0.817175 | 3.78E-52 | -1.69E-46 |
MS.gene05505 | MS.gene25785 | 0.813793 | 2.14E-51 | -1.69E-46 |
MS.gene055206 | MS.gene25785 | 0.805595 | 1.24E-49 | -1.69E-46 |
MS.gene055362 | MS.gene25785 | 0.839322 | 1.70E-57 | -1.69E-46 |
MS.gene055397 | MS.gene25785 | 0.845504 | 3.90E-59 | -1.69E-46 |
MS.gene055412 | MS.gene25785 | 0.829812 | 4.17E-55 | -1.69E-46 |
MS.gene055499 | MS.gene25785 | 0.903114 | 4.85E-79 | -1.69E-46 |
MS.gene055502 | MS.gene25785 | 0.854736 | 1.01E-61 | -1.69E-46 |
MS.gene055577 | MS.gene25785 | 0.806357 | 8.56E-50 | -1.69E-46 |
MS.gene055636 | MS.gene25785 | 0.804221 | 2.40E-49 | -1.69E-46 |
MS.gene055647 | MS.gene25785 | 0.89644 | 3.68E-76 | -1.69E-46 |
MS.gene055722 | MS.gene25785 | 0.83051 | 2.82E-55 | -1.69E-46 |
MS.gene05592 | MS.gene25785 | 0.814752 | 1.31E-51 | -1.69E-46 |
MS.gene055941 | MS.gene25785 | 0.825008 | 5.92E-54 | -1.69E-46 |
MS.gene056083 | MS.gene25785 | 0.877325 | 6.88E-69 | -1.69E-46 |
MS.gene056374 | MS.gene25785 | 0.87099 | 9.60E-67 | -1.69E-46 |
MS.gene056410 | MS.gene25785 | 0.802905 | 4.49E-49 | -1.69E-46 |
MS.gene056452 | MS.gene25785 | 0.833588 | 4.89E-56 | -1.69E-46 |
MS.gene056549 | MS.gene25785 | 0.838659 | 2.52E-57 | -1.69E-46 |
MS.gene056610 | MS.gene25785 | 0.805697 | 1.18E-49 | -1.69E-46 |
MS.gene056657 | MS.gene25785 | 0.85701 | 2.18E-62 | -1.69E-46 |
MS.gene056692 | MS.gene25785 | 0.837204 | 5.97E-57 | -1.69E-46 |
MS.gene056897 | MS.gene25785 | 0.805492 | 1.30E-49 | -1.69E-46 |
MS.gene057011 | MS.gene25785 | 0.879121 | 1.61E-69 | -1.69E-46 |
MS.gene057123 | MS.gene25785 | 0.818552 | 1.85E-52 | -1.69E-46 |
MS.gene057129 | MS.gene25785 | 0.85656 | 2.96E-62 | -1.69E-46 |
MS.gene057146 | MS.gene25785 | 0.877785 | 4.76E-69 | -1.69E-46 |
MS.gene057331 | MS.gene25785 | 0.843738 | 1.16E-58 | -1.69E-46 |
MS.gene057416 | MS.gene25785 | 0.892397 | 1.65E-74 | -1.69E-46 |
MS.gene057658 | MS.gene25785 | 0.802702 | 4.95E-49 | -1.69E-46 |
MS.gene057831 | MS.gene25785 | 0.83789 | 3.98E-57 | -1.69E-46 |
MS.gene058019 | MS.gene25785 | 0.866924 | 2.00E-65 | -1.69E-46 |
MS.gene058293 | MS.gene25785 | 0.806925 | 6.49E-50 | -1.69E-46 |
MS.gene058323 | MS.gene25785 | 0.841643 | 4.19E-58 | -1.69E-46 |
MS.gene05837 | MS.gene25785 | 0.815871 | 7.40E-52 | -1.69E-46 |
MS.gene058419 | MS.gene25785 | 0.856366 | 3.38E-62 | -1.69E-46 |
MS.gene058544 | MS.gene25785 | 0.86119 | 1.22E-63 | -1.69E-46 |
MS.gene058660 | MS.gene25785 | 0.866724 | 2.31E-65 | -1.69E-46 |
MS.gene058773 | MS.gene25785 | 0.825171 | 5.42E-54 | -1.69E-46 |
MS.gene05883 | MS.gene25785 | 0.890939 | 6.26E-74 | -1.69E-46 |
MS.gene059022 | MS.gene25785 | 0.829433 | 5.16E-55 | -1.69E-46 |
MS.gene059023 | MS.gene25785 | 0.816456 | 5.48E-52 | -1.69E-46 |
MS.gene059029 | MS.gene25785 | 0.844278 | 8.35E-59 | -1.69E-46 |
MS.gene05934 | MS.gene25785 | 0.848633 | 5.41E-60 | -1.69E-46 |
MS.gene059536 | MS.gene25785 | 0.91724 | 6.75E-86 | -1.69E-46 |
MS.gene059677 | MS.gene25785 | 0.848507 | 5.86E-60 | -1.69E-46 |
MS.gene059688 | MS.gene25785 | 0.811902 | 5.55E-51 | -1.69E-46 |
MS.gene059718 | MS.gene25785 | 0.856789 | 2.54E-62 | -1.69E-46 |
MS.gene059756 | MS.gene25785 | 0.844262 | 8.43E-59 | -1.69E-46 |
MS.gene059801 | MS.gene25785 | 0.822381 | 2.44E-53 | -1.69E-46 |
MS.gene059858 | MS.gene25785 | 0.810671 | 1.03E-50 | -1.69E-46 |
MS.gene059902 | MS.gene25785 | 0.843554 | 1.30E-58 | -1.69E-46 |
MS.gene059960 | MS.gene25785 | 0.904524 | 1.12E-79 | -1.69E-46 |
MS.gene060482 | MS.gene25785 | 0.802748 | 4.84E-49 | -1.69E-46 |
MS.gene060675 | MS.gene25785 | 0.801136 | 1.04E-48 | -1.69E-46 |
MS.gene060762 | MS.gene25785 | 0.805463 | 1.32E-49 | -1.69E-46 |
MS.gene06077 | MS.gene25785 | 0.834096 | 3.65E-56 | -1.69E-46 |
MS.gene060804 | MS.gene25785 | 0.845709 | 3.43E-59 | -1.69E-46 |
MS.gene06092 | MS.gene25785 | 0.840134 | 1.04E-57 | -1.69E-46 |
MS.gene061134 | MS.gene25785 | 0.837604 | 4.71E-57 | -1.69E-46 |
MS.gene061150 | MS.gene25785 | 0.876578 | 1.25E-68 | -1.69E-46 |
MS.gene061171 | MS.gene25785 | 0.848956 | 4.40E-60 | -1.69E-46 |
MS.gene061200 | MS.gene25785 | 0.911524 | 5.51E-83 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25785.t1 | MTR_3g080800 | 91.480 | 223 | 10 | 3 | 1 | 222 | 1 | 215 | 4.72e-137 | 383 |
MS.gene25785.t1 | MTR_1g060610 | 44.286 | 140 | 75 | 2 | 73 | 209 | 5 | 144 | 3.33e-28 | 104 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25785.t1 | AT1G32990 | 79.310 | 203 | 35 | 3 | 20 | 222 | 26 | 221 | 1.04e-104 | 301 |
MS.gene25785.t1 | AT5G51610 | 52.941 | 170 | 40 | 2 | 51 | 219 | 48 | 178 | 4.01e-46 | 151 |
MS.gene25785.t1 | AT4G35490 | 46.377 | 138 | 71 | 2 | 75 | 209 | 13 | 150 | 6.69e-31 | 111 |
MS.gene25785.t1 | AT4G35490 | 46.377 | 138 | 71 | 2 | 75 | 209 | 13 | 150 | 6.69e-31 | 111 |
Find 65 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGCCTTGCCACCACCGGGTT+TGG | 0.203659 | 3.2:+70760158 | None:intergenic |
AGCAGGCACAGCGGCAAATA+TGG | 0.212659 | 3.2:-70758258 | MS.gene25785:CDS |
TTCAAAGGGTGTTAACATTA+TGG | 0.250272 | 3.2:-70759961 | MS.gene25785:CDS |
GCCTTGCCACCACCGGGTTT+GGG | 0.296743 | 3.2:+70760159 | None:intergenic |
TGGAGCCGGTGTCGCCTTCC+CGG | 0.342001 | 3.2:+70760004 | None:intergenic |
CCACCGGTTGGACCGGCTCT+TGG | 0.343636 | 3.2:-70759984 | MS.gene25785:CDS |
GTTCTACTTCTTAAAGCTGC+TGG | 0.386964 | 3.2:-70759727 | MS.gene25785:intron |
TACAACAATTGCTTCTGCTT+GGG | 0.394575 | 3.2:+70758206 | None:intergenic |
TTGTTGTGTAGGGGTGGAAA+AGG | 0.402114 | 3.2:-70758402 | MS.gene25785:intron |
TTCAACGGGAATGATATAAC+CGG | 0.425199 | 3.2:+70759899 | None:intergenic |
TTTCTTGGCCTTGCCACCAC+CGG | 0.430649 | 3.2:+70760152 | None:intergenic |
TTCTGCTTGGGTTCAAGAAT+AGG | 0.432814 | 3.2:+70758218 | None:intergenic |
ACCGGCTCCACCGGTTGGAC+CGG | 0.445154 | 3.2:-70759991 | MS.gene25785:CDS |
AATTGCTTCTGAGAAGTTGC+CGG | 0.445935 | 3.2:-70758321 | MS.gene25785:CDS |
GCCGGTCCAACCGGTGGAGC+CGG | 0.447208 | 3.2:+70759990 | None:intergenic |
TGAGTGGTGGGTAGGGAAAG+AGG | 0.454086 | 3.2:+70760225 | None:intergenic |
TCAATGGCTTCCACTCTCAT+TGG | 0.454304 | 3.2:-70760354 | MS.gene25785:CDS |
TTACAACAATTGCTTCTGCT+TGG | 0.457628 | 3.2:+70758205 | None:intergenic |
ATAAAGCTGGCTCTTGAAGC+CGG | 0.458425 | 3.2:-70760023 | MS.gene25785:CDS |
GAACCAAGAGCCGGTCCAAC+CGG | 0.467333 | 3.2:+70759981 | None:intergenic |
TTCTTGGCCTTGCCACCACC+GGG | 0.468969 | 3.2:+70760153 | None:intergenic |
GCAGGCACAGCGGCAAATAT+GGG | 0.470157 | 3.2:-70758257 | MS.gene25785:CDS |
TGGACCGGCTCTTGGTTCAA+AGG | 0.470221 | 3.2:-70759976 | MS.gene25785:CDS |
TCAAAGACAGTGATTTCAAC+GGG | 0.477736 | 3.2:+70759885 | None:intergenic |
TGTTGTGTAGGGGTGGAAAA+GGG | 0.492679 | 3.2:-70758401 | MS.gene25785:intron |
GAGTGGTGGGTAGGGAAAGA+GGG | 0.497515 | 3.2:+70760226 | None:intergenic |
GGACCGGCTCTTGGTTCAAA+GGG | 0.498892 | 3.2:-70759975 | MS.gene25785:CDS |
TGGAGAATGAGTGGTGGGTA+GGG | 0.504513 | 3.2:+70760218 | None:intergenic |
ATGAATAACTGAGACTCCAC+TGG | 0.507026 | 3.2:+70760266 | None:intergenic |
ACCGGGTTTGGGTGGAGCCA+TGG | 0.512574 | 3.2:+70760170 | None:intergenic |
ACCCAAACCCGGTGGTGGCA+AGG | 0.516417 | 3.2:-70760160 | MS.gene25785:CDS |
AGTTGAAAACATTGAAGAAG+AGG | 0.519538 | 3.2:+70760311 | None:intergenic |
TTGGAGAATGAGTGGTGGGT+AGG | 0.522674 | 3.2:+70760217 | None:intergenic |
TTGCCACCACCGGGTTTGGG+TGG | 0.523478 | 3.2:+70760162 | None:intergenic |
TAAAGCTGGCTCTTGAAGCC+GGG | 0.523483 | 3.2:-70760022 | MS.gene25785:CDS |
GAAGGCGACACCGGCTCCAC+CGG | 0.524077 | 3.2:-70760000 | MS.gene25785:CDS |
GCTCCACCCAAACCCGGTGG+TGG | 0.530005 | 3.2:-70760165 | MS.gene25785:CDS |
TTAAGAAGTAGAACAGAAGC+AGG | 0.535760 | 3.2:+70759736 | None:intergenic |
TGAAGCCGGGAAGGCGACAC+CGG | 0.536862 | 3.2:-70760009 | MS.gene25785:CDS |
ATGGTCTCACAATTCAAGTC+CGG | 0.540025 | 3.2:+70758302 | None:intergenic |
GCCATGGCTCCACCCAAACC+CGG | 0.560448 | 3.2:-70760171 | MS.gene25785:CDS |
TGCTTGGGTTCAAGAATAGG+AGG | 0.562010 | 3.2:+70758221 | None:intergenic |
GGTGGTGGCAAGGCCAAGAA+AGG | 0.566703 | 3.2:-70760150 | MS.gene25785:intron |
TGACGGAGCGCCAATGAGAG+TGG | 0.568496 | 3.2:+70760344 | None:intergenic |
GCGACACCGGCTCCACCGGT+TGG | 0.574069 | 3.2:-70759996 | MS.gene25785:CDS |
AGTGGTTGGAATCATAAAGC+TGG | 0.577839 | 3.2:-70760036 | MS.gene25785:CDS |
ATCAAAGACAGTGATTTCAA+CGG | 0.578769 | 3.2:+70759884 | None:intergenic |
CCAAGAGCCGGTCCAACCGG+TGG | 0.580423 | 3.2:+70759984 | None:intergenic |
TCAACGGGAATGATATAACC+GGG | 0.582949 | 3.2:+70759900 | None:intergenic |
GCTGGCTCTTGAAGCCGGGA+AGG | 0.585779 | 3.2:-70760018 | MS.gene25785:CDS |
ACGCTTCAAAATTACTGCCA+TGG | 0.592720 | 3.2:-70760187 | MS.gene25785:CDS |
TGAGTTGGAGAATGAGTGGT+GGG | 0.593408 | 3.2:+70760213 | None:intergenic |
ACACCCTTTGAACCAAGAGC+CGG | 0.596971 | 3.2:+70759972 | None:intergenic |
AATTCTCATAGCTGATTCGA+TGG | 0.598811 | 3.2:+70758283 | None:intergenic |
TCAGCTATGAGAATTATAGC+AGG | 0.610466 | 3.2:-70758275 | MS.gene25785:CDS |
AGAAGTAGAACAGAAGCAGG+TGG | 0.625937 | 3.2:+70759739 | None:intergenic |
TTGAGTTGGAGAATGAGTGG+TGG | 0.628018 | 3.2:+70760212 | None:intergenic |
AAAGGGTTCAAAAGACCCCA+AGG | 0.645242 | 3.2:-70758384 | MS.gene25785:CDS |
GAAGAGGAAGAACAAAGTGA+CGG | 0.645831 | 3.2:+70760327 | None:intergenic |
GCTAGAACTGCTGATAAACC+CGG | 0.652419 | 3.2:-70759918 | MS.gene25785:CDS |
TGAATAACTGAGACTCCACT+GGG | 0.661810 | 3.2:+70760267 | None:intergenic |
ATGGCTCCACCCAAACCCGG+TGG | 0.681058 | 3.2:-70760168 | MS.gene25785:CDS |
TCTTTGAGTTGGAGAATGAG+TGG | 0.685546 | 3.2:+70760209 | None:intergenic |
AAATTATCGTTAAAACCCAG+TGG | 0.702152 | 3.2:-70760282 | MS.gene25785:CDS |
GAGAATTATAGCAGGCACAG+CGG | 0.702772 | 3.2:-70758267 | MS.gene25785:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAACATAACATAATATCAA+AGG | + | chr3.2:70758861-70758880 | None:intergenic | 15.0% |
!! | TAACATAACATAATATCAAA+GGG | + | chr3.2:70758860-70758879 | None:intergenic | 15.0% |
!! | TGAACTATATTAAAATTGTT+AGG | - | chr3.2:70759435-70759454 | MS.gene25785:intron | 15.0% |
!! | AACATAACATAATATCAAAG+GGG | + | chr3.2:70758859-70758878 | None:intergenic | 20.0% |
!! | AGTTGTAATATATGAAACAT+AGG | - | chr3.2:70758983-70759002 | MS.gene25785:intron | 20.0% |
!! | ATGTAATAGACTTTATAGTT+GGG | - | chr3.2:70759909-70759928 | MS.gene25785:CDS | 20.0% |
!! | ATTCTAACAAATTATATCAC+AGG | + | chr3.2:70758891-70758910 | None:intergenic | 20.0% |
!! | CATACTGTATAAAAAAAATC+AGG | + | chr3.2:70759892-70759911 | None:intergenic | 20.0% |
!! | TATGTAATAGACTTTATAGT+TGG | - | chr3.2:70759908-70759927 | MS.gene25785:CDS | 20.0% |
!!! | TATTTTGTTGTGTTATTTTC+AGG | - | chr3.2:70758765-70758784 | MS.gene25785:intron | 20.0% |
! | AAAAAAAATCAGGTACAGAA+AGG | + | chr3.2:70759882-70759901 | None:intergenic | 25.0% |
! | AAATTGAATCACAGAGTAAA+CGG | + | chr3.2:70759536-70759555 | None:intergenic | 25.0% |
! | AAGATAGTAGCAGAAAATAT+TGG | - | chr3.2:70759939-70759958 | MS.gene25785:CDS | 25.0% |
! | AATGAAATATAGCAATGACT+AGG | + | chr3.2:70759293-70759312 | None:intergenic | 25.0% |
! | AGATAGTAGCAGAAAATATT+GGG | - | chr3.2:70759940-70759959 | MS.gene25785:CDS | 25.0% |
! | AGGATCATTGAAACTTAAAT+AGG | - | chr3.2:70759358-70759377 | MS.gene25785:intron | 25.0% |
! | ATGAAATATAGCAATGACTA+GGG | + | chr3.2:70759292-70759311 | None:intergenic | 25.0% |
! | ATTAAAACACCTAGTAAACA+GGG | + | chr3.2:70759806-70759825 | None:intergenic | 25.0% |
! | ATTGAAACTTAAATAGGGTA+AGG | - | chr3.2:70759364-70759383 | MS.gene25785:intron | 25.0% |
! | CTAAATATCCAATATCAGTA+TGG | + | chr3.2:70759464-70759483 | None:intergenic | 25.0% |
! | GGATCATTGAAACTTAAATA+GGG | - | chr3.2:70759359-70759378 | MS.gene25785:intron | 25.0% |
!! | CACAGTATTTTACATATCAT+TGG | + | chr3.2:70759678-70759697 | None:intergenic | 25.0% |
!! | CTGTCATTAATTTAGAGTTA+AGG | - | chr3.2:70759338-70759357 | MS.gene25785:intron | 25.0% |
!! | TTACAACATGTTTGTGTTTT+TGG | - | chr3.2:70758492-70758511 | MS.gene25785:intron | 25.0% |
!!! | ATGATCTATTTGTTTTAAGC+TGG | - | chr3.2:70759563-70759582 | MS.gene25785:intron | 25.0% |
!!! | TATTGGTTTGATAGATTATC+AGG | - | chr3.2:70760054-70760073 | MS.gene25785:intron | 25.0% |
AAAACGAAGCAGATATGTTA+AGG | - | chr3.2:70760030-70760049 | MS.gene25785:CDS | 30.0% | |
AAATTATCGTTAAAACCCAG+TGG | - | chr3.2:70758274-70758293 | MS.gene25785:CDS | 30.0% | |
AGCAGATATGTTAAGGTTAT+TGG | - | chr3.2:70760037-70760056 | MS.gene25785:CDS | 30.0% | |
AGTTGAAAACATTGAAGAAG+AGG | + | chr3.2:70758248-70758267 | None:intergenic | 30.0% | |
ATACCTTCAGTATAAAGTGT+CGG | - | chr3.2:70759147-70759166 | MS.gene25785:intron | 30.0% | |
ATATAGTTCACTTAGTTGCA+AGG | + | chr3.2:70759425-70759444 | None:intergenic | 30.0% | |
ATCAAAGACAGTGATTTCAA+CGG | + | chr3.2:70758675-70758694 | None:intergenic | 30.0% | |
ATTAGTCATTAGCTGGAATT+TGG | - | chr3.2:70759251-70759270 | MS.gene25785:intron | 30.0% | |
ATTTACTAGAGATGCATTAG+TGG | + | chr3.2:70758943-70758962 | None:intergenic | 30.0% | |
CATTAAAACACCTAGTAAAC+AGG | + | chr3.2:70759807-70759826 | None:intergenic | 30.0% | |
CTCTAAATTAATGACAGTTG+AGG | + | chr3.2:70759335-70759354 | None:intergenic | 30.0% | |
GAAAGTTATTAGTCATTAGC+TGG | - | chr3.2:70759244-70759263 | MS.gene25785:intron | 30.0% | |
GCTAACTATAAGACACTATT+GGG | - | chr3.2:70759187-70759206 | MS.gene25785:intron | 30.0% | |
TCCAAACTCTATTATACTGA+TGG | - | chr3.2:70760125-70760144 | MS.gene25785:intron | 30.0% | |
TCCATCAGTATAATAGAGTT+TGG | + | chr3.2:70760129-70760148 | None:intergenic | 30.0% | |
TGATTGTTGTATGTAATGAC+TGG | - | chr3.2:70759074-70759093 | MS.gene25785:intron | 30.0% | |
TTAAAACACCTAGTAAACAG+GGG | + | chr3.2:70759805-70759824 | None:intergenic | 30.0% | |
TTTAAGCTGGATCTAATCAA+GGG | - | chr3.2:70759576-70759595 | MS.gene25785:intron | 30.0% | |
! | CTAGTAAATTAGCCTGTTAT+TGG | - | chr3.2:70758954-70758973 | MS.gene25785:intron | 30.0% |
! | TTTTAAGCTGGATCTAATCA+AGG | - | chr3.2:70759575-70759594 | MS.gene25785:intron | 30.0% |
!! | CTGTTTACTAGGTGTTTTAA+TGG | - | chr3.2:70759805-70759824 | MS.gene25785:intron | 30.0% |
!! | TTCAAAGGGTGTTAACATTA+TGG | - | chr3.2:70758595-70758614 | MS.gene25785:intron | 30.0% |
!!! | AAGGTAAGTTTTGTTCAAGA+TGG | + | chr3.2:70759863-70759882 | None:intergenic | 30.0% |
!!! | AGGGAATGAGATTTTTTTAG+TGG | - | chr3.2:70759730-70759749 | MS.gene25785:CDS | 30.0% |
!!! | AGGTAAGTTTTGTTCAAGAT+GGG | + | chr3.2:70759862-70759881 | None:intergenic | 30.0% |
!!! | GAAGTTGTTTTTACCTTTCT+TGG | + | chr3.2:70758422-70758441 | None:intergenic | 30.0% |
!!! | TTACTAGGTGTTTTAATGGA+TGG | - | chr3.2:70759809-70759828 | MS.gene25785:intron | 30.0% |
!!! | TTTTTTAGTGGTTACATTCG+AGG | - | chr3.2:70759742-70759761 | MS.gene25785:CDS | 30.0% |
AAATTAATGACAGTTGAGGC+AGG | + | chr3.2:70759331-70759350 | None:intergenic | 35.0% | |
ACAACTTGTAGACCAATAAC+AGG | + | chr3.2:70758969-70758988 | None:intergenic | 35.0% | |
ACTATAAGACACTATTGGGT+CGG | - | chr3.2:70759191-70759210 | MS.gene25785:intron | 35.0% | |
AGAATTTCTCCTACACTACA+AGG | - | chr3.2:70759710-70759729 | MS.gene25785:intron | 35.0% | |
GAATTTCTCCTACACTACAA+GGG | - | chr3.2:70759711-70759730 | MS.gene25785:intron | 35.0% | |
GGCTAACTATAAGACACTAT+TGG | - | chr3.2:70759186-70759205 | MS.gene25785:intron | 35.0% | |
GTCTTGAAATATGATCAGTC+TGG | - | chr3.2:70759982-70760001 | MS.gene25785:CDS | 35.0% | |
TACAACAATTGCTTCTGCTT+GGG | + | chr3.2:70760353-70760372 | None:intergenic | 35.0% | |
TACCATAGTCTATATAGTGC+CGG | + | chr3.2:70759034-70759053 | None:intergenic | 35.0% | |
TCAAAGACAGTGATTTCAAC+GGG | + | chr3.2:70758674-70758693 | None:intergenic | 35.0% | |
TCAGCTATGAGAATTATAGC+AGG | - | chr3.2:70760281-70760300 | MS.gene25785:CDS | 35.0% | |
TTAAGAAGTAGAACAGAAGC+AGG | + | chr3.2:70758823-70758842 | None:intergenic | 35.0% | |
TTACAACAATTGCTTCTGCT+TGG | + | chr3.2:70760354-70760373 | None:intergenic | 35.0% | |
TTAGGCATCCATACTGATAT+TGG | - | chr3.2:70759453-70759472 | MS.gene25785:intron | 35.0% | |
TTCAACGGGAATGATATAAC+CGG | + | chr3.2:70758660-70758679 | None:intergenic | 35.0% | |
! | AAAGAGGGTTTTTGTGTTCA+AGG | + | chr3.2:70758318-70758337 | None:intergenic | 35.0% |
! | AAGAGGGTTTTTGTGTTCAA+GGG | + | chr3.2:70758317-70758336 | None:intergenic | 35.0% |
! | ACATTCGAGGTATTCTTACA+AGG | - | chr3.2:70759755-70759774 | MS.gene25785:CDS | 35.0% |
! | TCAAGATGGGGAGATTTTAA+TGG | + | chr3.2:70759849-70759868 | None:intergenic | 35.0% |
!! | AATTCTCATAGCTGATTCGA+TGG | + | chr3.2:70760276-70760295 | None:intergenic | 35.0% |
!! | ATGGACTGATTTGTTGTGTA+GGG | - | chr3.2:70760144-70760163 | MS.gene25785:intron | 35.0% |
!!! | ATTTTGAAGCGTCTTTGAGT+TGG | + | chr3.2:70758361-70758380 | None:intergenic | 35.0% |
!!! | GGTAAGTTTTGTTCAAGATG+GGG | + | chr3.2:70759861-70759880 | None:intergenic | 35.0% |
!!! | TTTCCTACTTTTTGTGCCTT+GGG | + | chr3.2:70760191-70760210 | None:intergenic | 35.0% |
!!! | TTTGTGTTTTTGGCAAACAG+TGG | - | chr3.2:70758502-70758521 | MS.gene25785:intron | 35.0% |
!!! | TTTTCCTACTTTTTGTGCCT+TGG | + | chr3.2:70760192-70760211 | None:intergenic | 35.0% |
AAGGCTACATCCACTACTTA+TGG | - | chr3.2:70759774-70759793 | MS.gene25785:intron | 40.0% | |
ACGCTTCAAAATTACTGCCA+TGG | - | chr3.2:70758369-70758388 | MS.gene25785:CDS | 40.0% | |
AGATTCACTCGTAAACAGGA+TGG | + | chr3.2:70760093-70760112 | None:intergenic | 40.0% | |
AGTGGTTGGAATCATAAAGC+TGG | - | chr3.2:70758520-70758539 | MS.gene25785:intron | 40.0% | |
ATCTCATTCCCTTGTAGTGT+AGG | + | chr3.2:70759722-70759741 | None:intergenic | 40.0% | |
ATGAATAACTGAGACTCCAC+TGG | + | chr3.2:70758293-70758312 | None:intergenic | 40.0% | |
ATGGTCTCACAATTCAAGTC+CGG | + | chr3.2:70760257-70760276 | None:intergenic | 40.0% | |
CACTAGATTCACTCGTAAAC+AGG | + | chr3.2:70760097-70760116 | None:intergenic | 40.0% | |
GAAGAGGAAGAACAAAGTGA+CGG | + | chr3.2:70758232-70758251 | None:intergenic | 40.0% | |
GTTCTACTTCTTAAAGCTGC+TGG | - | chr3.2:70758829-70758848 | MS.gene25785:intron | 40.0% | |
TCAACGGGAATGATATAACC+GGG | + | chr3.2:70758659-70758678 | None:intergenic | 40.0% | |
TGAATAACTGAGACTCCACT+GGG | + | chr3.2:70758292-70758311 | None:intergenic | 40.0% | |
TTCTGCTTGGGTTCAAGAAT+AGG | + | chr3.2:70760341-70760360 | None:intergenic | 40.0% | |
! | AATTGCTTCTGAGAAGTTGC+CGG | - | chr3.2:70760235-70760254 | MS.gene25785:CDS | 40.0% |
! | CTGAAGGTATGTCCAAGTAT+TGG | + | chr3.2:70759137-70759156 | None:intergenic | 40.0% |
!! | GATGGACTGATTTGTTGTGT+AGG | - | chr3.2:70760143-70760162 | MS.gene25785:intron | 40.0% |
!! | TCTTTGAGTTGGAGAATGAG+TGG | + | chr3.2:70758350-70758369 | None:intergenic | 40.0% |
!! | TGGACTGATTTGTTGTGTAG+GGG | - | chr3.2:70760145-70760164 | MS.gene25785:intron | 40.0% |
!!! | TGTTTTTGGCAAACAGTGGT+TGG | - | chr3.2:70758506-70758525 | MS.gene25785:intron | 40.0% |
!!! | TTCCTACTTTTTGTGCCTTG+GGG | + | chr3.2:70760190-70760209 | None:intergenic | 40.0% |
AAAGGGTTCAAAAGACCCCA+AGG | - | chr3.2:70760172-70760191 | MS.gene25785:CDS | 45.0% | |
AGAAGTAGAACAGAAGCAGG+TGG | + | chr3.2:70758820-70758839 | None:intergenic | 45.0% | |
AGGGGTTCAACCATAAGTAG+TGG | + | chr3.2:70759787-70759806 | None:intergenic | 45.0% | |
CACCGGCACTATATAGACTA+TGG | - | chr3.2:70759029-70759048 | MS.gene25785:intron | 45.0% | |
GAGAATTATAGCAGGCACAG+CGG | - | chr3.2:70760289-70760308 | MS.gene25785:CDS | 45.0% | |
GCTAGAACTGCTGATAAACC+CGG | - | chr3.2:70758638-70758657 | MS.gene25785:intron | 45.0% | |
TAATGACAGTTGAGGCAGGA+AGG | + | chr3.2:70759327-70759346 | None:intergenic | 45.0% | |
TGCTTGGGTTCAAGAATAGG+AGG | + | chr3.2:70760338-70760357 | None:intergenic | 45.0% | |
TGGTTGAACCCCTGTTTACT+AGG | - | chr3.2:70759794-70759813 | MS.gene25785:intron | 45.0% | |
TGTTGTGTAGGGGTGGAAAA+GGG | - | chr3.2:70760155-70760174 | MS.gene25785:CDS | 45.0% | |
TTGTTGTGTAGGGGTGGAAA+AGG | - | chr3.2:70760154-70760173 | MS.gene25785:CDS | 45.0% | |
! | ATAAAGCTGGCTCTTGAAGC+CGG | - | chr3.2:70758533-70758552 | MS.gene25785:intron | 45.0% |
! | GCACCGACACTTTATACTGA+AGG | + | chr3.2:70759153-70759172 | None:intergenic | 45.0% |
! | TGAGTTGGAGAATGAGTGGT+GGG | + | chr3.2:70758346-70758365 | None:intergenic | 45.0% |
!! | ACTGATTTGTTGTGTAGGGG+TGG | - | chr3.2:70760148-70760167 | MS.gene25785:intron | 45.0% |
!! | TCCAAGTATTGGACACGTGT+CGG | + | chr3.2:70759126-70759145 | None:intergenic | 45.0% |
!! | TTGAGTTGGAGAATGAGTGG+TGG | + | chr3.2:70758347-70758366 | None:intergenic | 45.0% |
ACACCCTTTGAACCAAGAGC+CGG | + | chr3.2:70758587-70758606 | None:intergenic | 50.0% | |
ACCGACACGTGTCCAATACT+TGG | - | chr3.2:70759122-70759141 | MS.gene25785:intron | 50.0% | |
CACTATTGGGTCGGCATGTT+TGG | - | chr3.2:70759200-70759219 | MS.gene25785:intron | 50.0% | |
CATAGGCACCACACTAGATG+CGG | - | chr3.2:70759000-70759019 | MS.gene25785:intron | 50.0% | |
GACCCCAAGGCACAAAAAGT+AGG | - | chr3.2:70760185-70760204 | MS.gene25785:CDS | 50.0% | |
! | TAAAGCTGGCTCTTGAAGCC+GGG | - | chr3.2:70758534-70758553 | MS.gene25785:intron | 50.0% |
!! | GTCGGTGCTACGTACTTGTA+AGG | - | chr3.2:70759165-70759184 | MS.gene25785:intron | 50.0% |
!! | TGGAGAATGAGTGGTGGGTA+GGG | + | chr3.2:70758341-70758360 | None:intergenic | 50.0% |
!! | TTGGAGAATGAGTGGTGGGT+AGG | + | chr3.2:70758342-70758361 | None:intergenic | 50.0% |
ACTAGATGCGGACACGACAC+CGG | - | chr3.2:70759012-70759031 | MS.gene25785:intron | 55.0% | |
AGCAGGCACAGCGGCAAATA+TGG | - | chr3.2:70760298-70760317 | MS.gene25785:CDS | 55.0% | |
GCAGGCACAGCGGCAAATAT+GGG | - | chr3.2:70760299-70760318 | MS.gene25785:CDS | 55.0% | |
TGACAGTTGAGGCAGGAAGG+AGG | + | chr3.2:70759324-70759343 | None:intergenic | 55.0% | |
TGTCGTGTCCGCATCTAGTG+TGG | + | chr3.2:70759011-70759030 | None:intergenic | 55.0% | |
! | GGACCGGCTCTTGGTTCAAA+GGG | - | chr3.2:70758581-70758600 | MS.gene25785:intron | 55.0% |
! | TGGACCGGCTCTTGGTTCAA+AGG | - | chr3.2:70758580-70758599 | MS.gene25785:intron | 55.0% |
!! | GAGTGGTGGGTAGGGAAAGA+GGG | + | chr3.2:70758333-70758352 | None:intergenic | 55.0% |
!! | TGAGTGGTGGGTAGGGAAAG+AGG | + | chr3.2:70758334-70758353 | None:intergenic | 55.0% |
!! | TTTCTTGGCCTTGCCACCAC+CGG | + | chr3.2:70758407-70758426 | None:intergenic | 55.0% |
GAACCAAGAGCCGGTCCAAC+CGG | + | chr3.2:70758578-70758597 | None:intergenic | 60.0% | |
! | GGTGGTGGCAAGGCCAAGAA+AGG | - | chr3.2:70758406-70758425 | MS.gene25785:intron | 60.0% |
! | TGACGGAGCGCCAATGAGAG+TGG | + | chr3.2:70758215-70758234 | None:intergenic | 60.0% |
!! | TTCTTGGCCTTGCCACCACC+GGG | + | chr3.2:70758406-70758425 | None:intergenic | 60.0% |
ACCGGGTTTGGGTGGAGCCA+TGG | + | chr3.2:70758389-70758408 | None:intergenic | 65.0% | |
ATGGCTCCACCCAAACCCGG+TGG | - | chr3.2:70758388-70758407 | MS.gene25785:CDS | 65.0% | |
GCCATGGCTCCACCCAAACC+CGG | - | chr3.2:70758385-70758404 | MS.gene25785:CDS | 65.0% | |
GCCTTGCCACCACCGGGTTT+GGG | + | chr3.2:70758400-70758419 | None:intergenic | 65.0% | |
GGGTCGGCATGTTTGGCCAG+CGG | - | chr3.2:70759207-70759226 | MS.gene25785:intron | 65.0% | |
TCGCAGTGCGTAGTTGCCGC+TGG | + | chr3.2:70759226-70759245 | None:intergenic | 65.0% | |
TGAAGCCGGGAAGGCGACAC+CGG | - | chr3.2:70758547-70758566 | MS.gene25785:intron | 65.0% | |
TTGCCACCACCGGGTTTGGG+TGG | + | chr3.2:70758397-70758416 | None:intergenic | 65.0% | |
! | ACCCAAACCCGGTGGTGGCA+AGG | - | chr3.2:70758396-70758415 | MS.gene25785:intron | 65.0% |
! | GCTGGCTCTTGAAGCCGGGA+AGG | - | chr3.2:70758538-70758557 | MS.gene25785:intron | 65.0% |
CCAAGAGCCGGTCCAACCGG+TGG | + | chr3.2:70758575-70758594 | None:intergenic | 70.0% | |
GCTCCACCCAAACCCGGTGG+TGG | - | chr3.2:70758391-70758410 | MS.gene25785:CDS | 70.0% | |
GGCCTTGCCACCACCGGGTT+TGG | + | chr3.2:70758401-70758420 | None:intergenic | 70.0% | |
! | ACCGGCTCCACCGGTTGGAC+CGG | - | chr3.2:70758565-70758584 | MS.gene25785:intron | 70.0% |
! | CCACCGGTTGGACCGGCTCT+TGG | - | chr3.2:70758572-70758591 | MS.gene25785:intron | 70.0% |
!! | GAAGGCGACACCGGCTCCAC+CGG | - | chr3.2:70758556-70758575 | MS.gene25785:intron | 70.0% |
!! | TGGAGCCGGTGTCGCCTTCC+CGG | + | chr3.2:70758555-70758574 | None:intergenic | 70.0% |
GCCGGTCCAACCGGTGGAGC+CGG | + | chr3.2:70758569-70758588 | None:intergenic | 75.0% | |
!! | GCGACACCGGCTCCACCGGT+TGG | - | chr3.2:70758560-70758579 | MS.gene25785:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 70758205 | 70760373 | 70758205 | ID=MS.gene25785 |
chr3.2 | mRNA | 70758205 | 70760373 | 70758205 | ID=MS.gene25785.t1;Parent=MS.gene25785 |
chr3.2 | exon | 70760151 | 70760373 | 70760151 | ID=MS.gene25785.t1.exon1;Parent=MS.gene25785.t1 |
chr3.2 | CDS | 70760151 | 70760373 | 70760151 | ID=cds.MS.gene25785.t1;Parent=MS.gene25785.t1 |
chr3.2 | exon | 70759884 | 70760056 | 70759884 | ID=MS.gene25785.t1.exon2;Parent=MS.gene25785.t1 |
chr3.2 | CDS | 70759884 | 70760056 | 70759884 | ID=cds.MS.gene25785.t1;Parent=MS.gene25785.t1 |
chr3.2 | exon | 70759728 | 70759791 | 70759728 | ID=MS.gene25785.t1.exon3;Parent=MS.gene25785.t1 |
chr3.2 | CDS | 70759728 | 70759791 | 70759728 | ID=cds.MS.gene25785.t1;Parent=MS.gene25785.t1 |
chr3.2 | exon | 70758205 | 70758413 | 70758205 | ID=MS.gene25785.t1.exon4;Parent=MS.gene25785.t1 |
chr3.2 | CDS | 70758205 | 70758413 | 70758205 | ID=cds.MS.gene25785.t1;Parent=MS.gene25785.t1 |
Gene Sequence |
Protein sequence |