AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene25785


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25785.t1 MTR_3g080800 91.480 223 10 3 1 222 1 215 4.72e-137 383
MS.gene25785.t1 MTR_1g060610 44.286 140 75 2 73 209 5 144 3.33e-28 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene25785.t1 AT1G32990 79.310 203 35 3 20 222 26 221 1.04e-104 301
MS.gene25785.t1 AT5G51610 52.941 170 40 2 51 219 48 178 4.01e-46 151
MS.gene25785.t1 AT4G35490 46.377 138 71 2 75 209 13 150 6.69e-31 111
MS.gene25785.t1 AT4G35490 46.377 138 71 2 75 209 13 150 6.69e-31 111

Find 65 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCCTTGCCACCACCGGGTT+TGG 0.203659 3.2:+70760158 None:intergenic
AGCAGGCACAGCGGCAAATA+TGG 0.212659 3.2:-70758258 MS.gene25785:CDS
TTCAAAGGGTGTTAACATTA+TGG 0.250272 3.2:-70759961 MS.gene25785:CDS
GCCTTGCCACCACCGGGTTT+GGG 0.296743 3.2:+70760159 None:intergenic
TGGAGCCGGTGTCGCCTTCC+CGG 0.342001 3.2:+70760004 None:intergenic
CCACCGGTTGGACCGGCTCT+TGG 0.343636 3.2:-70759984 MS.gene25785:CDS
GTTCTACTTCTTAAAGCTGC+TGG 0.386964 3.2:-70759727 MS.gene25785:intron
TACAACAATTGCTTCTGCTT+GGG 0.394575 3.2:+70758206 None:intergenic
TTGTTGTGTAGGGGTGGAAA+AGG 0.402114 3.2:-70758402 MS.gene25785:intron
TTCAACGGGAATGATATAAC+CGG 0.425199 3.2:+70759899 None:intergenic
TTTCTTGGCCTTGCCACCAC+CGG 0.430649 3.2:+70760152 None:intergenic
TTCTGCTTGGGTTCAAGAAT+AGG 0.432814 3.2:+70758218 None:intergenic
ACCGGCTCCACCGGTTGGAC+CGG 0.445154 3.2:-70759991 MS.gene25785:CDS
AATTGCTTCTGAGAAGTTGC+CGG 0.445935 3.2:-70758321 MS.gene25785:CDS
GCCGGTCCAACCGGTGGAGC+CGG 0.447208 3.2:+70759990 None:intergenic
TGAGTGGTGGGTAGGGAAAG+AGG 0.454086 3.2:+70760225 None:intergenic
TCAATGGCTTCCACTCTCAT+TGG 0.454304 3.2:-70760354 MS.gene25785:CDS
TTACAACAATTGCTTCTGCT+TGG 0.457628 3.2:+70758205 None:intergenic
ATAAAGCTGGCTCTTGAAGC+CGG 0.458425 3.2:-70760023 MS.gene25785:CDS
GAACCAAGAGCCGGTCCAAC+CGG 0.467333 3.2:+70759981 None:intergenic
TTCTTGGCCTTGCCACCACC+GGG 0.468969 3.2:+70760153 None:intergenic
GCAGGCACAGCGGCAAATAT+GGG 0.470157 3.2:-70758257 MS.gene25785:CDS
TGGACCGGCTCTTGGTTCAA+AGG 0.470221 3.2:-70759976 MS.gene25785:CDS
TCAAAGACAGTGATTTCAAC+GGG 0.477736 3.2:+70759885 None:intergenic
TGTTGTGTAGGGGTGGAAAA+GGG 0.492679 3.2:-70758401 MS.gene25785:intron
GAGTGGTGGGTAGGGAAAGA+GGG 0.497515 3.2:+70760226 None:intergenic
GGACCGGCTCTTGGTTCAAA+GGG 0.498892 3.2:-70759975 MS.gene25785:CDS
TGGAGAATGAGTGGTGGGTA+GGG 0.504513 3.2:+70760218 None:intergenic
ATGAATAACTGAGACTCCAC+TGG 0.507026 3.2:+70760266 None:intergenic
ACCGGGTTTGGGTGGAGCCA+TGG 0.512574 3.2:+70760170 None:intergenic
ACCCAAACCCGGTGGTGGCA+AGG 0.516417 3.2:-70760160 MS.gene25785:CDS
AGTTGAAAACATTGAAGAAG+AGG 0.519538 3.2:+70760311 None:intergenic
TTGGAGAATGAGTGGTGGGT+AGG 0.522674 3.2:+70760217 None:intergenic
TTGCCACCACCGGGTTTGGG+TGG 0.523478 3.2:+70760162 None:intergenic
TAAAGCTGGCTCTTGAAGCC+GGG 0.523483 3.2:-70760022 MS.gene25785:CDS
GAAGGCGACACCGGCTCCAC+CGG 0.524077 3.2:-70760000 MS.gene25785:CDS
GCTCCACCCAAACCCGGTGG+TGG 0.530005 3.2:-70760165 MS.gene25785:CDS
TTAAGAAGTAGAACAGAAGC+AGG 0.535760 3.2:+70759736 None:intergenic
TGAAGCCGGGAAGGCGACAC+CGG 0.536862 3.2:-70760009 MS.gene25785:CDS
ATGGTCTCACAATTCAAGTC+CGG 0.540025 3.2:+70758302 None:intergenic
GCCATGGCTCCACCCAAACC+CGG 0.560448 3.2:-70760171 MS.gene25785:CDS
TGCTTGGGTTCAAGAATAGG+AGG 0.562010 3.2:+70758221 None:intergenic
GGTGGTGGCAAGGCCAAGAA+AGG 0.566703 3.2:-70760150 MS.gene25785:intron
TGACGGAGCGCCAATGAGAG+TGG 0.568496 3.2:+70760344 None:intergenic
GCGACACCGGCTCCACCGGT+TGG 0.574069 3.2:-70759996 MS.gene25785:CDS
AGTGGTTGGAATCATAAAGC+TGG 0.577839 3.2:-70760036 MS.gene25785:CDS
ATCAAAGACAGTGATTTCAA+CGG 0.578769 3.2:+70759884 None:intergenic
CCAAGAGCCGGTCCAACCGG+TGG 0.580423 3.2:+70759984 None:intergenic
TCAACGGGAATGATATAACC+GGG 0.582949 3.2:+70759900 None:intergenic
GCTGGCTCTTGAAGCCGGGA+AGG 0.585779 3.2:-70760018 MS.gene25785:CDS
ACGCTTCAAAATTACTGCCA+TGG 0.592720 3.2:-70760187 MS.gene25785:CDS
TGAGTTGGAGAATGAGTGGT+GGG 0.593408 3.2:+70760213 None:intergenic
ACACCCTTTGAACCAAGAGC+CGG 0.596971 3.2:+70759972 None:intergenic
AATTCTCATAGCTGATTCGA+TGG 0.598811 3.2:+70758283 None:intergenic
TCAGCTATGAGAATTATAGC+AGG 0.610466 3.2:-70758275 MS.gene25785:CDS
AGAAGTAGAACAGAAGCAGG+TGG 0.625937 3.2:+70759739 None:intergenic
TTGAGTTGGAGAATGAGTGG+TGG 0.628018 3.2:+70760212 None:intergenic
AAAGGGTTCAAAAGACCCCA+AGG 0.645242 3.2:-70758384 MS.gene25785:CDS
GAAGAGGAAGAACAAAGTGA+CGG 0.645831 3.2:+70760327 None:intergenic
GCTAGAACTGCTGATAAACC+CGG 0.652419 3.2:-70759918 MS.gene25785:CDS
TGAATAACTGAGACTCCACT+GGG 0.661810 3.2:+70760267 None:intergenic
ATGGCTCCACCCAAACCCGG+TGG 0.681058 3.2:-70760168 MS.gene25785:CDS
TCTTTGAGTTGGAGAATGAG+TGG 0.685546 3.2:+70760209 None:intergenic
AAATTATCGTTAAAACCCAG+TGG 0.702152 3.2:-70760282 MS.gene25785:CDS
GAGAATTATAGCAGGCACAG+CGG 0.702772 3.2:-70758267 MS.gene25785:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACATAACATAATATCAA+AGG + chr3.2:70758861-70758880 None:intergenic 15.0%
!! TAACATAACATAATATCAAA+GGG + chr3.2:70758860-70758879 None:intergenic 15.0%
!! TGAACTATATTAAAATTGTT+AGG - chr3.2:70759435-70759454 MS.gene25785:intron 15.0%
!! AACATAACATAATATCAAAG+GGG + chr3.2:70758859-70758878 None:intergenic 20.0%
!! AGTTGTAATATATGAAACAT+AGG - chr3.2:70758983-70759002 MS.gene25785:intron 20.0%
!! ATGTAATAGACTTTATAGTT+GGG - chr3.2:70759909-70759928 MS.gene25785:CDS 20.0%
!! ATTCTAACAAATTATATCAC+AGG + chr3.2:70758891-70758910 None:intergenic 20.0%
!! CATACTGTATAAAAAAAATC+AGG + chr3.2:70759892-70759911 None:intergenic 20.0%
!! TATGTAATAGACTTTATAGT+TGG - chr3.2:70759908-70759927 MS.gene25785:CDS 20.0%
!!! TATTTTGTTGTGTTATTTTC+AGG - chr3.2:70758765-70758784 MS.gene25785:intron 20.0%
! AAAAAAAATCAGGTACAGAA+AGG + chr3.2:70759882-70759901 None:intergenic 25.0%
! AAATTGAATCACAGAGTAAA+CGG + chr3.2:70759536-70759555 None:intergenic 25.0%
! AAGATAGTAGCAGAAAATAT+TGG - chr3.2:70759939-70759958 MS.gene25785:CDS 25.0%
! AATGAAATATAGCAATGACT+AGG + chr3.2:70759293-70759312 None:intergenic 25.0%
! AGATAGTAGCAGAAAATATT+GGG - chr3.2:70759940-70759959 MS.gene25785:CDS 25.0%
! AGGATCATTGAAACTTAAAT+AGG - chr3.2:70759358-70759377 MS.gene25785:intron 25.0%
! ATGAAATATAGCAATGACTA+GGG + chr3.2:70759292-70759311 None:intergenic 25.0%
! ATTAAAACACCTAGTAAACA+GGG + chr3.2:70759806-70759825 None:intergenic 25.0%
! ATTGAAACTTAAATAGGGTA+AGG - chr3.2:70759364-70759383 MS.gene25785:intron 25.0%
! CTAAATATCCAATATCAGTA+TGG + chr3.2:70759464-70759483 None:intergenic 25.0%
! GGATCATTGAAACTTAAATA+GGG - chr3.2:70759359-70759378 MS.gene25785:intron 25.0%
!! CACAGTATTTTACATATCAT+TGG + chr3.2:70759678-70759697 None:intergenic 25.0%
!! CTGTCATTAATTTAGAGTTA+AGG - chr3.2:70759338-70759357 MS.gene25785:intron 25.0%
!! TTACAACATGTTTGTGTTTT+TGG - chr3.2:70758492-70758511 MS.gene25785:intron 25.0%
!!! ATGATCTATTTGTTTTAAGC+TGG - chr3.2:70759563-70759582 MS.gene25785:intron 25.0%
!!! TATTGGTTTGATAGATTATC+AGG - chr3.2:70760054-70760073 MS.gene25785:intron 25.0%
AAAACGAAGCAGATATGTTA+AGG - chr3.2:70760030-70760049 MS.gene25785:CDS 30.0%
AAATTATCGTTAAAACCCAG+TGG - chr3.2:70758274-70758293 MS.gene25785:CDS 30.0%
AGCAGATATGTTAAGGTTAT+TGG - chr3.2:70760037-70760056 MS.gene25785:CDS 30.0%
AGTTGAAAACATTGAAGAAG+AGG + chr3.2:70758248-70758267 None:intergenic 30.0%
ATACCTTCAGTATAAAGTGT+CGG - chr3.2:70759147-70759166 MS.gene25785:intron 30.0%
ATATAGTTCACTTAGTTGCA+AGG + chr3.2:70759425-70759444 None:intergenic 30.0%
ATCAAAGACAGTGATTTCAA+CGG + chr3.2:70758675-70758694 None:intergenic 30.0%
ATTAGTCATTAGCTGGAATT+TGG - chr3.2:70759251-70759270 MS.gene25785:intron 30.0%
ATTTACTAGAGATGCATTAG+TGG + chr3.2:70758943-70758962 None:intergenic 30.0%
CATTAAAACACCTAGTAAAC+AGG + chr3.2:70759807-70759826 None:intergenic 30.0%
CTCTAAATTAATGACAGTTG+AGG + chr3.2:70759335-70759354 None:intergenic 30.0%
GAAAGTTATTAGTCATTAGC+TGG - chr3.2:70759244-70759263 MS.gene25785:intron 30.0%
GCTAACTATAAGACACTATT+GGG - chr3.2:70759187-70759206 MS.gene25785:intron 30.0%
TCCAAACTCTATTATACTGA+TGG - chr3.2:70760125-70760144 MS.gene25785:intron 30.0%
TCCATCAGTATAATAGAGTT+TGG + chr3.2:70760129-70760148 None:intergenic 30.0%
TGATTGTTGTATGTAATGAC+TGG - chr3.2:70759074-70759093 MS.gene25785:intron 30.0%
TTAAAACACCTAGTAAACAG+GGG + chr3.2:70759805-70759824 None:intergenic 30.0%
TTTAAGCTGGATCTAATCAA+GGG - chr3.2:70759576-70759595 MS.gene25785:intron 30.0%
! CTAGTAAATTAGCCTGTTAT+TGG - chr3.2:70758954-70758973 MS.gene25785:intron 30.0%
! TTTTAAGCTGGATCTAATCA+AGG - chr3.2:70759575-70759594 MS.gene25785:intron 30.0%
!! CTGTTTACTAGGTGTTTTAA+TGG - chr3.2:70759805-70759824 MS.gene25785:intron 30.0%
!! TTCAAAGGGTGTTAACATTA+TGG - chr3.2:70758595-70758614 MS.gene25785:intron 30.0%
!!! AAGGTAAGTTTTGTTCAAGA+TGG + chr3.2:70759863-70759882 None:intergenic 30.0%
!!! AGGGAATGAGATTTTTTTAG+TGG - chr3.2:70759730-70759749 MS.gene25785:CDS 30.0%
!!! AGGTAAGTTTTGTTCAAGAT+GGG + chr3.2:70759862-70759881 None:intergenic 30.0%
!!! GAAGTTGTTTTTACCTTTCT+TGG + chr3.2:70758422-70758441 None:intergenic 30.0%
!!! TTACTAGGTGTTTTAATGGA+TGG - chr3.2:70759809-70759828 MS.gene25785:intron 30.0%
!!! TTTTTTAGTGGTTACATTCG+AGG - chr3.2:70759742-70759761 MS.gene25785:CDS 30.0%
AAATTAATGACAGTTGAGGC+AGG + chr3.2:70759331-70759350 None:intergenic 35.0%
ACAACTTGTAGACCAATAAC+AGG + chr3.2:70758969-70758988 None:intergenic 35.0%
ACTATAAGACACTATTGGGT+CGG - chr3.2:70759191-70759210 MS.gene25785:intron 35.0%
AGAATTTCTCCTACACTACA+AGG - chr3.2:70759710-70759729 MS.gene25785:intron 35.0%
GAATTTCTCCTACACTACAA+GGG - chr3.2:70759711-70759730 MS.gene25785:intron 35.0%
GGCTAACTATAAGACACTAT+TGG - chr3.2:70759186-70759205 MS.gene25785:intron 35.0%
GTCTTGAAATATGATCAGTC+TGG - chr3.2:70759982-70760001 MS.gene25785:CDS 35.0%
TACAACAATTGCTTCTGCTT+GGG + chr3.2:70760353-70760372 None:intergenic 35.0%
TACCATAGTCTATATAGTGC+CGG + chr3.2:70759034-70759053 None:intergenic 35.0%
TCAAAGACAGTGATTTCAAC+GGG + chr3.2:70758674-70758693 None:intergenic 35.0%
TCAGCTATGAGAATTATAGC+AGG - chr3.2:70760281-70760300 MS.gene25785:CDS 35.0%
TTAAGAAGTAGAACAGAAGC+AGG + chr3.2:70758823-70758842 None:intergenic 35.0%
TTACAACAATTGCTTCTGCT+TGG + chr3.2:70760354-70760373 None:intergenic 35.0%
TTAGGCATCCATACTGATAT+TGG - chr3.2:70759453-70759472 MS.gene25785:intron 35.0%
TTCAACGGGAATGATATAAC+CGG + chr3.2:70758660-70758679 None:intergenic 35.0%
! AAAGAGGGTTTTTGTGTTCA+AGG + chr3.2:70758318-70758337 None:intergenic 35.0%
! AAGAGGGTTTTTGTGTTCAA+GGG + chr3.2:70758317-70758336 None:intergenic 35.0%
! ACATTCGAGGTATTCTTACA+AGG - chr3.2:70759755-70759774 MS.gene25785:CDS 35.0%
! TCAAGATGGGGAGATTTTAA+TGG + chr3.2:70759849-70759868 None:intergenic 35.0%
!! AATTCTCATAGCTGATTCGA+TGG + chr3.2:70760276-70760295 None:intergenic 35.0%
!! ATGGACTGATTTGTTGTGTA+GGG - chr3.2:70760144-70760163 MS.gene25785:intron 35.0%
!!! ATTTTGAAGCGTCTTTGAGT+TGG + chr3.2:70758361-70758380 None:intergenic 35.0%
!!! GGTAAGTTTTGTTCAAGATG+GGG + chr3.2:70759861-70759880 None:intergenic 35.0%
!!! TTTCCTACTTTTTGTGCCTT+GGG + chr3.2:70760191-70760210 None:intergenic 35.0%
!!! TTTGTGTTTTTGGCAAACAG+TGG - chr3.2:70758502-70758521 MS.gene25785:intron 35.0%
!!! TTTTCCTACTTTTTGTGCCT+TGG + chr3.2:70760192-70760211 None:intergenic 35.0%
AAGGCTACATCCACTACTTA+TGG - chr3.2:70759774-70759793 MS.gene25785:intron 40.0%
ACGCTTCAAAATTACTGCCA+TGG - chr3.2:70758369-70758388 MS.gene25785:CDS 40.0%
AGATTCACTCGTAAACAGGA+TGG + chr3.2:70760093-70760112 None:intergenic 40.0%
AGTGGTTGGAATCATAAAGC+TGG - chr3.2:70758520-70758539 MS.gene25785:intron 40.0%
ATCTCATTCCCTTGTAGTGT+AGG + chr3.2:70759722-70759741 None:intergenic 40.0%
ATGAATAACTGAGACTCCAC+TGG + chr3.2:70758293-70758312 None:intergenic 40.0%
ATGGTCTCACAATTCAAGTC+CGG + chr3.2:70760257-70760276 None:intergenic 40.0%
CACTAGATTCACTCGTAAAC+AGG + chr3.2:70760097-70760116 None:intergenic 40.0%
GAAGAGGAAGAACAAAGTGA+CGG + chr3.2:70758232-70758251 None:intergenic 40.0%
GTTCTACTTCTTAAAGCTGC+TGG - chr3.2:70758829-70758848 MS.gene25785:intron 40.0%
TCAACGGGAATGATATAACC+GGG + chr3.2:70758659-70758678 None:intergenic 40.0%
TGAATAACTGAGACTCCACT+GGG + chr3.2:70758292-70758311 None:intergenic 40.0%
TTCTGCTTGGGTTCAAGAAT+AGG + chr3.2:70760341-70760360 None:intergenic 40.0%
! AATTGCTTCTGAGAAGTTGC+CGG - chr3.2:70760235-70760254 MS.gene25785:CDS 40.0%
! CTGAAGGTATGTCCAAGTAT+TGG + chr3.2:70759137-70759156 None:intergenic 40.0%
!! GATGGACTGATTTGTTGTGT+AGG - chr3.2:70760143-70760162 MS.gene25785:intron 40.0%
!! TCTTTGAGTTGGAGAATGAG+TGG + chr3.2:70758350-70758369 None:intergenic 40.0%
!! TGGACTGATTTGTTGTGTAG+GGG - chr3.2:70760145-70760164 MS.gene25785:intron 40.0%
!!! TGTTTTTGGCAAACAGTGGT+TGG - chr3.2:70758506-70758525 MS.gene25785:intron 40.0%
!!! TTCCTACTTTTTGTGCCTTG+GGG + chr3.2:70760190-70760209 None:intergenic 40.0%
AAAGGGTTCAAAAGACCCCA+AGG - chr3.2:70760172-70760191 MS.gene25785:CDS 45.0%
AGAAGTAGAACAGAAGCAGG+TGG + chr3.2:70758820-70758839 None:intergenic 45.0%
AGGGGTTCAACCATAAGTAG+TGG + chr3.2:70759787-70759806 None:intergenic 45.0%
CACCGGCACTATATAGACTA+TGG - chr3.2:70759029-70759048 MS.gene25785:intron 45.0%
GAGAATTATAGCAGGCACAG+CGG - chr3.2:70760289-70760308 MS.gene25785:CDS 45.0%
GCTAGAACTGCTGATAAACC+CGG - chr3.2:70758638-70758657 MS.gene25785:intron 45.0%
TAATGACAGTTGAGGCAGGA+AGG + chr3.2:70759327-70759346 None:intergenic 45.0%
TGCTTGGGTTCAAGAATAGG+AGG + chr3.2:70760338-70760357 None:intergenic 45.0%
TGGTTGAACCCCTGTTTACT+AGG - chr3.2:70759794-70759813 MS.gene25785:intron 45.0%
TGTTGTGTAGGGGTGGAAAA+GGG - chr3.2:70760155-70760174 MS.gene25785:CDS 45.0%
TTGTTGTGTAGGGGTGGAAA+AGG - chr3.2:70760154-70760173 MS.gene25785:CDS 45.0%
! ATAAAGCTGGCTCTTGAAGC+CGG - chr3.2:70758533-70758552 MS.gene25785:intron 45.0%
! GCACCGACACTTTATACTGA+AGG + chr3.2:70759153-70759172 None:intergenic 45.0%
! TGAGTTGGAGAATGAGTGGT+GGG + chr3.2:70758346-70758365 None:intergenic 45.0%
!! ACTGATTTGTTGTGTAGGGG+TGG - chr3.2:70760148-70760167 MS.gene25785:intron 45.0%
!! TCCAAGTATTGGACACGTGT+CGG + chr3.2:70759126-70759145 None:intergenic 45.0%
!! TTGAGTTGGAGAATGAGTGG+TGG + chr3.2:70758347-70758366 None:intergenic 45.0%
ACACCCTTTGAACCAAGAGC+CGG + chr3.2:70758587-70758606 None:intergenic 50.0%
ACCGACACGTGTCCAATACT+TGG - chr3.2:70759122-70759141 MS.gene25785:intron 50.0%
CACTATTGGGTCGGCATGTT+TGG - chr3.2:70759200-70759219 MS.gene25785:intron 50.0%
CATAGGCACCACACTAGATG+CGG - chr3.2:70759000-70759019 MS.gene25785:intron 50.0%
GACCCCAAGGCACAAAAAGT+AGG - chr3.2:70760185-70760204 MS.gene25785:CDS 50.0%
! TAAAGCTGGCTCTTGAAGCC+GGG - chr3.2:70758534-70758553 MS.gene25785:intron 50.0%
!! GTCGGTGCTACGTACTTGTA+AGG - chr3.2:70759165-70759184 MS.gene25785:intron 50.0%
!! TGGAGAATGAGTGGTGGGTA+GGG + chr3.2:70758341-70758360 None:intergenic 50.0%
!! TTGGAGAATGAGTGGTGGGT+AGG + chr3.2:70758342-70758361 None:intergenic 50.0%
ACTAGATGCGGACACGACAC+CGG - chr3.2:70759012-70759031 MS.gene25785:intron 55.0%
AGCAGGCACAGCGGCAAATA+TGG - chr3.2:70760298-70760317 MS.gene25785:CDS 55.0%
GCAGGCACAGCGGCAAATAT+GGG - chr3.2:70760299-70760318 MS.gene25785:CDS 55.0%
TGACAGTTGAGGCAGGAAGG+AGG + chr3.2:70759324-70759343 None:intergenic 55.0%
TGTCGTGTCCGCATCTAGTG+TGG + chr3.2:70759011-70759030 None:intergenic 55.0%
! GGACCGGCTCTTGGTTCAAA+GGG - chr3.2:70758581-70758600 MS.gene25785:intron 55.0%
! TGGACCGGCTCTTGGTTCAA+AGG - chr3.2:70758580-70758599 MS.gene25785:intron 55.0%
!! GAGTGGTGGGTAGGGAAAGA+GGG + chr3.2:70758333-70758352 None:intergenic 55.0%
!! TGAGTGGTGGGTAGGGAAAG+AGG + chr3.2:70758334-70758353 None:intergenic 55.0%
!! TTTCTTGGCCTTGCCACCAC+CGG + chr3.2:70758407-70758426 None:intergenic 55.0%
GAACCAAGAGCCGGTCCAAC+CGG + chr3.2:70758578-70758597 None:intergenic 60.0%
! GGTGGTGGCAAGGCCAAGAA+AGG - chr3.2:70758406-70758425 MS.gene25785:intron 60.0%
! TGACGGAGCGCCAATGAGAG+TGG + chr3.2:70758215-70758234 None:intergenic 60.0%
!! TTCTTGGCCTTGCCACCACC+GGG + chr3.2:70758406-70758425 None:intergenic 60.0%
ACCGGGTTTGGGTGGAGCCA+TGG + chr3.2:70758389-70758408 None:intergenic 65.0%
ATGGCTCCACCCAAACCCGG+TGG - chr3.2:70758388-70758407 MS.gene25785:CDS 65.0%
GCCATGGCTCCACCCAAACC+CGG - chr3.2:70758385-70758404 MS.gene25785:CDS 65.0%
GCCTTGCCACCACCGGGTTT+GGG + chr3.2:70758400-70758419 None:intergenic 65.0%
GGGTCGGCATGTTTGGCCAG+CGG - chr3.2:70759207-70759226 MS.gene25785:intron 65.0%
TCGCAGTGCGTAGTTGCCGC+TGG + chr3.2:70759226-70759245 None:intergenic 65.0%
TGAAGCCGGGAAGGCGACAC+CGG - chr3.2:70758547-70758566 MS.gene25785:intron 65.0%
TTGCCACCACCGGGTTTGGG+TGG + chr3.2:70758397-70758416 None:intergenic 65.0%
! ACCCAAACCCGGTGGTGGCA+AGG - chr3.2:70758396-70758415 MS.gene25785:intron 65.0%
! GCTGGCTCTTGAAGCCGGGA+AGG - chr3.2:70758538-70758557 MS.gene25785:intron 65.0%
CCAAGAGCCGGTCCAACCGG+TGG + chr3.2:70758575-70758594 None:intergenic 70.0%
GCTCCACCCAAACCCGGTGG+TGG - chr3.2:70758391-70758410 MS.gene25785:CDS 70.0%
GGCCTTGCCACCACCGGGTT+TGG + chr3.2:70758401-70758420 None:intergenic 70.0%
! ACCGGCTCCACCGGTTGGAC+CGG - chr3.2:70758565-70758584 MS.gene25785:intron 70.0%
! CCACCGGTTGGACCGGCTCT+TGG - chr3.2:70758572-70758591 MS.gene25785:intron 70.0%
!! GAAGGCGACACCGGCTCCAC+CGG - chr3.2:70758556-70758575 MS.gene25785:intron 70.0%
!! TGGAGCCGGTGTCGCCTTCC+CGG + chr3.2:70758555-70758574 None:intergenic 70.0%
GCCGGTCCAACCGGTGGAGC+CGG + chr3.2:70758569-70758588 None:intergenic 75.0%
!! GCGACACCGGCTCCACCGGT+TGG - chr3.2:70758560-70758579 MS.gene25785:intron 75.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 70758205 70760373 70758205 ID=MS.gene25785
chr3.2 mRNA 70758205 70760373 70758205 ID=MS.gene25785.t1;Parent=MS.gene25785
chr3.2 exon 70760151 70760373 70760151 ID=MS.gene25785.t1.exon1;Parent=MS.gene25785.t1
chr3.2 CDS 70760151 70760373 70760151 ID=cds.MS.gene25785.t1;Parent=MS.gene25785.t1
chr3.2 exon 70759884 70760056 70759884 ID=MS.gene25785.t1.exon2;Parent=MS.gene25785.t1
chr3.2 CDS 70759884 70760056 70759884 ID=cds.MS.gene25785.t1;Parent=MS.gene25785.t1
chr3.2 exon 70759728 70759791 70759728 ID=MS.gene25785.t1.exon3;Parent=MS.gene25785.t1
chr3.2 CDS 70759728 70759791 70759728 ID=cds.MS.gene25785.t1;Parent=MS.gene25785.t1
chr3.2 exon 70758205 70758413 70758205 ID=MS.gene25785.t1.exon4;Parent=MS.gene25785.t1
chr3.2 CDS 70758205 70758413 70758205 ID=cds.MS.gene25785.t1;Parent=MS.gene25785.t1
Gene Sequence

>MS.gene25785

ATGGCTTCCACTCTCATTGGCGCTCCGTCACTTTGTTCTTCCTCTTCTTCAATGTTTTCAACTCATGTCAAATTATCGTTAAAACCCAGTGGAGTCTCAGTTATTCATTCCCTTGAACACAAAAACCCTCTTTCCCTACCCACCACTCATTCTCCAACTCAAAGACGCTTCAAAATTACTGCCATGGCTCCACCCAAACCCGGTGGTGGCAAGGCCAAGAAAGGTAAAAACAACTTCATTCATTCTTTCATTTCAAATTTCTTTGTTTTGCTGTGATAATCTTATAATTACAACATGTTTGTGTTTTTGGCAAACAGTGGTTGGAATCATAAAGCTGGCTCTTGAAGCCGGGAAGGCGACACCGGCTCCACCGGTTGGACCGGCTCTTGGTTCAAAGGGTGTTAACATTATGGCTTTCTGTAAAGATTACAATGCTAGAACTGCTGATAAACCCGGTTATATCATTCCCGTTGAAATCACTGTCTTTGATGTAACGTTCTCTCTTTTGTATTTTCTTTTTTTTCATTTCATTTCATTTTTTCTCTTTAGATTTCAGACAGTATTTTGTTGTGTTATTTTCAGGATAAAAGTTTTACTTTCATATTGAAGACTCCACCTGCTTCTGTTCTACTTCTTAAAGCTGCTGGTATGCCCCTTTGATATTATGTTATGTTATCTTTTGTCCTGTGATATAATTTGTTAGAATGTGCTTCAAATTCATAATTCAGCTCTTTACCACTAATGCATCTCTAGTAAATTAGCCTGTTATTGGTCTACAAGTTGTAATATATGAAACATAGGCACCACACTAGATGCGGACACGACACCGGCACTATATAGACTATGGTAACAATTTGAGAAAATTGAAGTGATTGTTGTATGTAATGACTGGTGTCAGTGTCGTGTTGATGTCAGACACCGACACGTGTCCAATACTTGGACATACCTTCAGTATAAAGTGTCGGTGCTACGTACTTGTAAGGCTAACTATAAGACACTATTGGGTCGGCATGTTTGGCCAGCGGCAACTACGCACTGCGAAAGTTATTAGTCATTAGCTGGAATTTGGATTAAAAAATTGCATCCCTAGTCATTGCTATATTTCATTGTGCTTTTCCTCCTTCCTGCCTCAACTGTCATTAATTTAGAGTTAAGGATCATTGAAACTTAAATAGGGTAAGGTTATTCAACTCAGTACACTATATGATCTTGTGCTGCCTTGCAACTAAGTGAACTATATTAAAATTGTTAGGCATCCATACTGATATTGGATATTTAGTATACATTTGATTTGACAGATCTAAAGCAAGTATGAATTGTTTTAGCTTCCGTTTACTCTGTGATTCAATTTTGTATCTATGATCTATTTGTTTTAAGCTGGATCTAATCAAGGGTTATTGTATATTTCAAGAATTATAATCTCAAGTCTCAACAGTTGAGATGTGATCTAAATAACATTTTACATATAATCCAATGATATGTAAAATACTGTGTAGTATTATATGAGAATTTCTCCTACACTACAAGGGAATGAGATTTTTTTAGTGGTTACATTCGAGGTATTCTTACAAGGCTACATCCACTACTTATGGTTGAACCCCTGTTTACTAGGTGTTTTAATGGATGGAGAACTCTGCATTGCCATTAAAATCTCCCCATCTTGAACAAAACTTACCTTTCTGTACCTGATTTTTTTTATACAGTATGTAATAGACTTTATAGTTGGGCTGTCTGAAGATAGTAGCAGAAAATATTGGGTTTTTGTGCTTTTAATTCAGTCTTGAAATATGATCAGTCTGGTGTTGTCATACTTATCTAAATAAACAAAACGAAGCAGATATGTTAAGGTTATTGGTTTGATAGATTATCAGGCGTTTAATTTCAACCATCCTGTTTACGAGTGAATCTAGTGTTCAAAGTTCCAAACTCTATTATACTGATGGACTGATTTGTTGTGTAGGGGTGGAAAAGGGTTCAAAAGACCCCAAGGCACAAAAAGTAGGAAAAGTCACAATTGATCAATTGCGTACAATTGCTTCTGAGAAGTTGCCGGACTTGAATTGTGAGACCATCGAATCAGCTATGAGAATTATAGCAGGCACAGCGGCAAATATGGGAATTGATGTTGATCCTCCTATTCTTGAACCCAAGCAGAAGCAATTGTTGTAA

Protein sequence

>MS.gene25785.t1

MASTLIGAPSLCSSSSSMFSTHVKLSLKPSGVSVIHSLEHKNPLSLPTTHSPTQRRFKITAMAPPKPGGGKAKKVVGIIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKPGYIIPVEITVFDDKSFTFILKTPPASVLLLKAAGVEKGSKDPKAQKVGKVTIDQLRTIASEKLPDLNCETIESAMRIIAGTAANMGIDVDPPILEPKQKQLL