AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33513


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33513.t1 MTR_3g090490 95.322 171 4 1 1 167 79 249 5.55e-121 341
MS.gene33513.t1 MTR_3g090490 95.322 171 4 1 1 167 6 176 1.50e-120 337
MS.gene33513.t1 MTR_3g090490 94.595 148 4 1 24 167 1 148 2.52e-102 290
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33513.t1 AT1G21350 81.287 171 27 2 1 167 79 248 2.13e-100 289
MS.gene33513.t1 AT1G21350 81.287 171 27 2 1 167 92 261 2.68e-100 290
MS.gene33513.t1 AT1G21350 83.108 148 20 2 24 167 1 147 1.76e-87 253
MS.gene33513.t1 AT1G21350 83.108 148 20 2 24 167 1 147 1.76e-87 253
MS.gene33513.t1 AT1G21350 67.251 171 24 3 1 167 79 221 1.15e-74 223

Find 33 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGATGTTGCACGGGATTT+TGG 0.149216 3.4:+82757205 MS.gene33513:CDS
GCATCTTCTGCCATCAATTC+TGG 0.244162 3.4:-82755912 None:intergenic
AATAATAACATACCAGTAAC+TGG 0.338409 3.4:+82757438 MS.gene33513:CDS
TGAGGCTCATCCAGCTCTAT+TGG 0.371238 3.4:+82754481 MS.gene33513:CDS
GAAACAAACCTTCCAGTTAC+TGG 0.385727 3.4:-82757450 None:intergenic
GCAGAAGATGCTAAATTGTC+TGG 0.420368 3.4:+82755924 MS.gene33513:CDS
AGCCTCTGACTGGAAAGGTT+TGG 0.435430 3.4:+82754444 MS.gene33513:CDS
ACTGGTATGTTATTATTACT+TGG 0.444749 3.4:-82757432 None:intergenic
GACTGGAAAGGTTTGGACAT+TGG 0.462065 3.4:+82754451 MS.gene33513:CDS
TGAATCATACCTCATCATAT+AGG 0.463182 3.4:-82755962 None:intergenic
ACGGTCAGTTTGATGATTCA+AGG 0.467280 3.4:+82757409 MS.gene33513:CDS
TGGTCGAAGGCCGTTTGAGC+TGG 0.473440 3.4:+82757380 MS.gene33513:CDS
ACAGGATGGACCAGAATTGA+TGG 0.497097 3.4:+82755902 MS.gene33513:intron
CAGAATCCTACCAATAGAGC+TGG 0.507380 3.4:-82754491 None:intergenic
TAGCTTTCAGAGCCTCTGAC+TGG 0.510935 3.4:+82754434 None:intergenic
CCGTGGTAAACCAGCTCAAA+CGG 0.528066 3.4:-82757390 None:intergenic
CATACCTCATCATATAGGTA+TGG 0.528343 3.4:-82755957 None:intergenic
TCATCATATAGGTATGGAAA+AGG 0.530498 3.4:-82755951 None:intergenic
GCTTACTGAATTCTATATGA+AGG 0.535787 3.4:+82755641 MS.gene33513:CDS
TTTGCTCTGATGGTACCGGC+TGG 0.552310 3.4:-82757596 None:intergenic
TGCAGTCACAGGATGTTGCA+CGG 0.554754 3.4:+82757197 MS.gene33513:intron
TTCAGAGCCTCTGACTGGAA+AGG 0.559382 3.4:+82754439 MS.gene33513:CDS
TTTCAAAAGAGACTTGAGCT+TGG 0.561188 3.4:+82757551 MS.gene33513:intron
GCAGTCACAGGATGTTGCAC+GGG 0.565333 3.4:+82757198 MS.gene33513:intron
TCGTGTTCTGAGTGGCCAGC+CGG 0.569048 3.4:+82757581 MS.gene33513:CDS
GTCCAAACCTTTCCAGTCAG+AGG 0.582049 3.4:-82754446 None:intergenic
AATAATAACAGGATGGTCGA+AGG 0.587773 3.4:+82757367 MS.gene33513:intron
CCGTTTGAGCTGGTTTACCA+CGG 0.632650 3.4:+82757390 MS.gene33513:CDS
GTGTTGGATGCAGCATAAAG+TGG 0.640512 3.4:+82757721 MS.gene33513:intron
ATAACATACCAGTAACTGGA+AGG 0.643706 3.4:+82757442 MS.gene33513:CDS
GCAATAGATCGTGTTCTGAG+TGG 0.662500 3.4:+82757573 MS.gene33513:CDS
TTGAATCATCAAACTGACCG+TGG 0.684690 3.4:-82757407 None:intergenic
GGTGTATAACAAATGGACAG+TGG 0.705672 3.4:-82755599 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTCATTAAAAAAAACTT+TGG + chr3.4:82755094-82755113 MS.gene33513:intron 10.0%
!! AGACAAAAATAATAATTAAA+TGG - chr3.4:82755744-82755763 None:intergenic 10.0%
!! GACAAAAATAATAATTAAAT+GGG - chr3.4:82755743-82755762 None:intergenic 10.0%
!! TTAATTAATCAAATAATAAC+AGG + chr3.4:82757356-82757375 MS.gene33513:intron 10.0%
!!! AAATAATTTGTTTCTTTTTT+TGG + chr3.4:82756507-82756526 MS.gene33513:intron 10.0%
!!! GTTTTATTATATTATATTAC+TGG - chr3.4:82757150-82757169 None:intergenic 10.0%
!! GTAACATATTATAAAGAAAA+GGG + chr3.4:82756409-82756428 MS.gene33513:intron 15.0%
!! TCATAAATTTATTTATACTG+TGG + chr3.4:82756857-82756876 MS.gene33513:intron 15.0%
!!! AGAATTTTACCTTTTTAAAA+AGG + chr3.4:82757243-82757262 MS.gene33513:CDS 15.0%
!!! TTGTAAATACCTTTTTAAAA+AGG - chr3.4:82757255-82757274 None:intergenic 15.0%
!!! TTTTTAAAAAGGTAAAATTC+TGG - chr3.4:82757244-82757263 None:intergenic 15.0%
!! AGAGAAACAAACTAAAATAA+CGG - chr3.4:82754802-82754821 None:intergenic 20.0%
!! AGAGTAACAAATTTGTATAA+AGG - chr3.4:82756784-82756803 None:intergenic 20.0%
!! GAGTAACAAATTTGTATAAA+GGG - chr3.4:82756783-82756802 None:intergenic 20.0%
!! GGTAACATATTATAAAGAAA+AGG + chr3.4:82756408-82756427 MS.gene33513:intron 20.0%
!! TGTCTTTATTATATATAACC+TGG + chr3.4:82756070-82756089 MS.gene33513:intron 20.0%
!! TTAATCAAATAATAACAGGA+TGG + chr3.4:82757360-82757379 MS.gene33513:intron 20.0%
!! TTTATGCATCATAATTCATA+AGG - chr3.4:82755427-82755446 None:intergenic 20.0%
!! TTTGAGAAAATTTCAGTTTA+TGG + chr3.4:82757657-82757676 MS.gene33513:intron 20.0%
!!! AATTAAATGTAAAAGTACCT+AGG - chr3.4:82757624-82757643 None:intergenic 20.0%
!!! AATTTGTTTCTTTTTTTGGT+AGG + chr3.4:82756511-82756530 MS.gene33513:intron 20.0%
!!! AATTTTCTCAAACAATCAAA+AGG - chr3.4:82757649-82757668 None:intergenic 20.0%
!!! TATTTTAGTTTGTTTCTCTT+AGG + chr3.4:82754803-82754822 MS.gene33513:intron 20.0%
!!! TTGTTTTCATAAGCTATATA+CGG + chr3.4:82754756-82754775 MS.gene33513:intron 20.0%
! AAATGAATTTACTATCACCT+GGG - chr3.4:82755824-82755843 None:intergenic 25.0%
! AAGAATGAGTTCATATGAAA+TGG + chr3.4:82755028-82755047 MS.gene33513:intron 25.0%
! AATAATAACATACCAGTAAC+TGG + chr3.4:82757438-82757457 MS.gene33513:CDS 25.0%
! AATCCAAATCACATAAACAT+TGG + chr3.4:82756907-82756926 MS.gene33513:intron 25.0%
! AATTTGTAGCTTACAGTATA+AGG + chr3.4:82754623-82754642 MS.gene33513:intron 25.0%
! ACTGGTATGTTATTATTACT+TGG - chr3.4:82757435-82757454 None:intergenic 25.0%
! ACTTCAAATCTTCAGTAAAT+TGG - chr3.4:82757119-82757138 None:intergenic 25.0%
! AGAATGAGTTCATATGAAAT+GGG + chr3.4:82755029-82755048 MS.gene33513:intron 25.0%
! ATATGAACTCATTCTTACTA+GGG - chr3.4:82755024-82755043 None:intergenic 25.0%
! ATTTGTAGCTTACAGTATAA+GGG + chr3.4:82754624-82754643 MS.gene33513:intron 25.0%
! GAATTGTGAATACTTAAAAC+AGG - chr3.4:82755999-82756018 None:intergenic 25.0%
! GAGAAACAAACTAAAATAAC+GGG - chr3.4:82754801-82754820 None:intergenic 25.0%
! GATAAAAAATAATGTTTGCC+AGG - chr3.4:82756091-82756110 None:intergenic 25.0%
! TACGAAACTAAAGCATAATA+TGG + chr3.4:82756949-82756968 MS.gene33513:intron 25.0%
! TATGTTTCTTGTTCTATGTT+AGG + chr3.4:82754557-82754576 MS.gene33513:intron 25.0%
! TATTTGAACTCAACACTTAA+AGG + chr3.4:82756611-82756630 MS.gene33513:intron 25.0%
! TCAAATAAGCCAATTCAAAT+AGG + chr3.4:82754998-82755017 MS.gene33513:intron 25.0%
! TTAAGTATTCACAATTCACA+TGG + chr3.4:82756002-82756021 MS.gene33513:intron 25.0%
! TTACAACACATGATCAAATA+TGG - chr3.4:82756722-82756741 None:intergenic 25.0%
!! AGCAAAGAAGCTAATTATTT+TGG - chr3.4:82756552-82756571 None:intergenic 25.0%
!! ATTAAGTTGTTTATCTAAGC+AGG - chr3.4:82754606-82754625 None:intergenic 25.0%
!! ATTTTTGTCTTTCTACAGAA+AGG + chr3.4:82755754-82755773 MS.gene33513:intron 25.0%
!! GCAAAGAAGCTAATTATTTT+GGG - chr3.4:82756551-82756570 None:intergenic 25.0%
!! GTATAGATCACATATTTTCT+TGG - chr3.4:82756354-82756373 None:intergenic 25.0%
!! TGTTTTCATAAGCTATATAC+GGG + chr3.4:82754757-82754776 MS.gene33513:intron 25.0%
!! TTAAGTTGTTTATCTAAGCA+GGG - chr3.4:82754605-82754624 None:intergenic 25.0%
!!! CTTTTGTTGCTTATATTTTG+TGG + chr3.4:82755489-82755508 MS.gene33513:intron 25.0%
!!! TTTTTCAGGTGTATAACAAA+TGG - chr3.4:82755609-82755628 None:intergenic 25.0%
AAAGGGTAAAAAACATCTGT+AGG + chr3.4:82756426-82756445 MS.gene33513:intron 30.0%
AAATATGACCATGACATTGA+TGG - chr3.4:82757686-82757705 None:intergenic 30.0%
AATAAAACCCTGATCTTTAG+TGG + chr3.4:82757162-82757181 MS.gene33513:intron 30.0%
AATGAATTTACTATCACCTG+GGG - chr3.4:82755823-82755842 None:intergenic 30.0%
ACTCTGTTTAGCTATAATGT+GGG + chr3.4:82756235-82756254 MS.gene33513:intron 30.0%
ATAATCCACATCTGTCAATT+GGG + chr3.4:82756295-82756314 MS.gene33513:intron 30.0%
CATATGAACTCATTCTTACT+AGG - chr3.4:82755025-82755044 None:intergenic 30.0%
GAAATGAATTTACTATCACC+TGG - chr3.4:82755825-82755844 None:intergenic 30.0%
GCTTACTGAATTCTATATGA+AGG + chr3.4:82755641-82755660 MS.gene33513:CDS 30.0%
GTACCAATGTTTATGTGATT+TGG - chr3.4:82756913-82756932 None:intergenic 30.0%
GTGATAGTAAATTCATTTCC+TGG + chr3.4:82755826-82755845 MS.gene33513:intron 30.0%
TACTCTGTTTAGCTATAATG+TGG + chr3.4:82756234-82756253 MS.gene33513:intron 30.0%
TATAATCCACATCTGTCAAT+TGG + chr3.4:82756294-82756313 MS.gene33513:intron 30.0%
TCAAAGTGGTACTTAACAAT+TGG + chr3.4:82756828-82756847 MS.gene33513:intron 30.0%
TCACAATTCACATGGTTTAT+CGG + chr3.4:82756010-82756029 MS.gene33513:intron 30.0%
TCATCATATAGGTATGGAAA+AGG - chr3.4:82755954-82755973 None:intergenic 30.0%
TGAATCATACCTCATCATAT+AGG - chr3.4:82755965-82755984 None:intergenic 30.0%
TGTGTTGTAAACAAATGTGA+CGG + chr3.4:82756732-82756751 MS.gene33513:intron 30.0%
! AATTTCACTTGCTTGCATTT+TGG - chr3.4:82755056-82755075 None:intergenic 30.0%
! AGACTAAAGCATGAGTATTT+TGG + chr3.4:82755446-82755465 MS.gene33513:intron 30.0%
! TAGAAGATCTTTTACCTGAT+GGG + chr3.4:82757078-82757097 MS.gene33513:intron 30.0%
! TTTCTTTAGCTCAATCAAAG+TGG + chr3.4:82756814-82756833 MS.gene33513:intron 30.0%
! TTTTCCATACCTATATGATG+AGG + chr3.4:82755953-82755972 MS.gene33513:CDS 30.0%
!!! GAGAATGCTATTTTGTAAGT+AGG + chr3.4:82755116-82755135 MS.gene33513:intron 30.0%
!!! GCTTTACAATGACTTTTTTC+AGG - chr3.4:82755623-82755642 None:intergenic 30.0%
!!! TATTTTCTTGGTGATGTCTT+AGG - chr3.4:82756342-82756361 None:intergenic 30.0%
!!! TCTTTTTTTGGTAGGAAAGA+GGG + chr3.4:82756519-82756538 MS.gene33513:intron 30.0%
!!! TGCTATTTTGTAAGTAGGTT+AGG + chr3.4:82755121-82755140 MS.gene33513:intron 30.0%
!!! TTCTTTTTTTGGTAGGAAAG+AGG + chr3.4:82756518-82756537 MS.gene33513:intron 30.0%
AATAATAACAGGATGGTCGA+AGG + chr3.4:82757367-82757386 MS.gene33513:intron 35.0%
ATAACATACCAGTAACTGGA+AGG + chr3.4:82757442-82757461 MS.gene33513:CDS 35.0%
ATATAGACTTAACCCTCCAA+AGG + chr3.4:82756156-82756175 MS.gene33513:intron 35.0%
ATGAATTTACTATCACCTGG+GGG - chr3.4:82755822-82755841 None:intergenic 35.0%
CATACCTCATCATATAGGTA+TGG - chr3.4:82755960-82755979 None:intergenic 35.0%
GCAATCTACTTGTTCTCTAA+TGG - chr3.4:82756213-82756232 None:intergenic 35.0%
GGTAGTCAAACAAATTACTG+TGG + chr3.4:82755662-82755681 MS.gene33513:intron 35.0%
GTCAGTGCTTCATAAAATGA+AGG - chr3.4:82755178-82755197 None:intergenic 35.0%
TAAAACATGTGTGCGTAGAA+AGG + chr3.4:82756387-82756406 MS.gene33513:intron 35.0%
TATTGAATGATCGTCCAACT+TGG + chr3.4:82755868-82755887 MS.gene33513:intron 35.0%
TCTTGTTCTATGTTAGGCTT+AGG + chr3.4:82754563-82754582 MS.gene33513:intron 35.0%
TTAAATAGACATAGCTGTGC+AGG - chr3.4:82756047-82756066 None:intergenic 35.0%
TTACTAGGGCCTATTTGAAT+TGG - chr3.4:82755010-82755029 None:intergenic 35.0%
TTTCAAAAGAGACTTGAGCT+TGG + chr3.4:82757551-82757570 MS.gene33513:intron 35.0%
TTTCAACGTAGCTATATTCC+AGG - chr3.4:82755847-82755866 None:intergenic 35.0%
! AGAAGATCTTTTACCTGATG+GGG + chr3.4:82757079-82757098 MS.gene33513:intron 35.0%
! ATTCAGATTGAAGGTGTGTA+TGG - chr3.4:82755288-82755307 None:intergenic 35.0%
! GTAGAAGATCTTTTACCTGA+TGG + chr3.4:82757077-82757096 MS.gene33513:intron 35.0%
! TGGTATGTGGCTAAGTTTTA+TGG + chr3.4:82755383-82755402 MS.gene33513:intron 35.0%
! TTGGACATTGGAAGATTTTG+AGG + chr3.4:82754463-82754482 MS.gene33513:CDS 35.0%
!! AGTTTTATGGACTGTTCTTG+TGG + chr3.4:82755396-82755415 MS.gene33513:intron 35.0%
!!! TACGCACACATGTTTTAACA+AGG - chr3.4:82756384-82756403 None:intergenic 35.0%
AAACACTGATCAACAGTGAC+TGG - chr3.4:82757278-82757297 None:intergenic 40.0%
AACCATCAATGTCAGTGTCA+CGG + chr3.4:82755242-82755261 MS.gene33513:intron 40.0%
AAGCACTTGTGAGACTGTTT+AGG - chr3.4:82754962-82754981 None:intergenic 40.0%
ACATACCACAAAATGGTGCA+TGG - chr3.4:82755371-82755390 None:intergenic 40.0%
ACATCATACCTTGACATCTG+AGG - chr3.4:82757324-82757343 None:intergenic 40.0%
ACATCCTGTGACTGCAATAA+AGG - chr3.4:82757193-82757212 None:intergenic 40.0%
ACCTGCATGACAACATAAAG+AGG - chr3.4:82755564-82755583 None:intergenic 40.0%
AGGACATTCCACTAAAGATC+AGG - chr3.4:82757173-82757192 None:intergenic 40.0%
AGTTAAACCCTCAGATGTCA+AGG + chr3.4:82757313-82757332 MS.gene33513:intron 40.0%
ATATTTCTTTCCTCAGCAGC+AGG + chr3.4:82755696-82755715 MS.gene33513:intron 40.0%
ATCCAACACTTCATGCAAAC+AGG - chr3.4:82757710-82757729 None:intergenic 40.0%
ATGTCCTTTATTGCAGTCAC+AGG + chr3.4:82757186-82757205 MS.gene33513:intron 40.0%
CATCATACCTTGACATCTGA+GGG - chr3.4:82757323-82757342 None:intergenic 40.0%
CCTGCATGACAACATAAAGA+GGG - chr3.4:82755563-82755582 None:intergenic 40.0%
CTACGTAGCATTCAGATTGA+AGG - chr3.4:82755297-82755316 None:intergenic 40.0%
CTTAACCCAATTGACAGATG+TGG - chr3.4:82756303-82756322 None:intergenic 40.0%
CTTAGCCACATACCACAAAA+TGG - chr3.4:82755378-82755397 None:intergenic 40.0%
GAAACAAACCTTCCAGTTAC+TGG - chr3.4:82757453-82757472 None:intergenic 40.0%
GCAGAAGATGCTAAATTGTC+TGG + chr3.4:82755924-82755943 MS.gene33513:CDS 40.0%
GGACATTCCACTAAAGATCA+GGG - chr3.4:82757172-82757191 None:intergenic 40.0%
GGTCTTGACTTATGCAAGTT+TGG - chr3.4:82755722-82755741 None:intergenic 40.0%
GGTGTATAACAAATGGACAG+TGG - chr3.4:82755602-82755621 None:intergenic 40.0%
TACCATCAGAGCAAAAACCT+AGG + chr3.4:82757604-82757623 MS.gene33513:CDS 40.0%
TATGGTCTCCATCAATGTCA+TGG + chr3.4:82757675-82757694 MS.gene33513:intron 40.0%
TGCTTTCAATTAACCCCATC+AGG - chr3.4:82757095-82757114 None:intergenic 40.0%
TGTAGGCTTCAACTTCTCTT+AGG + chr3.4:82756443-82756462 MS.gene33513:intron 40.0%
TTCCTGTTTGCATGAAGTGT+TGG + chr3.4:82757705-82757724 MS.gene33513:intron 40.0%
TTGAATCATCAAACTGACCG+TGG - chr3.4:82757410-82757429 None:intergenic 40.0%
! ACGGTCAGTTTGATGATTCA+AGG + chr3.4:82757409-82757428 MS.gene33513:CDS 40.0%
! ATACGGGTGTCGCATATATA+GGG + chr3.4:82754773-82754792 MS.gene33513:intron 40.0%
! ATGCACCATTTTGTGGTATG+TGG + chr3.4:82755370-82755389 MS.gene33513:intron 40.0%
! TACATTTTGCACACTGTAGC+TGG - chr3.4:82755346-82755365 None:intergenic 40.0%
! TACCTAGGTTTTTGCTCTGA+TGG - chr3.4:82757609-82757628 None:intergenic 40.0%
! TATACGGGTGTCGCATATAT+AGG + chr3.4:82754772-82754791 MS.gene33513:intron 40.0%
! TGCTATCAGCTCTCAGTTTT+AGG - chr3.4:82757025-82757044 None:intergenic 40.0%
!! ATGAAGCACTGACAACACAA+TGG + chr3.4:82755185-82755204 MS.gene33513:intron 40.0%
!! GATTTTGGAGGGAAAACCTT+TGG - chr3.4:82756175-82756194 None:intergenic 40.0%
!! TGTGTTTGCGAGTTGGATTT+TGG - chr3.4:82756190-82756209 None:intergenic 40.0%
!! TTTGCGAGTTGGATTTTGGA+GGG - chr3.4:82756186-82756205 None:intergenic 40.0%
AAACATCGTTACCACTGAGG+AGG - chr3.4:82755531-82755550 None:intergenic 45.0%
AACATCGTTACCACTGAGGA+GGG - chr3.4:82755530-82755549 None:intergenic 45.0%
ACAAATGTGACGGCAAACGT+TGG + chr3.4:82756742-82756761 MS.gene33513:intron 45.0%
ACAGGATGGACCAGAATTGA+TGG + chr3.4:82755902-82755921 MS.gene33513:intron 45.0%
ACCATCAATGTCAGTGTCAC+GGG + chr3.4:82755243-82755262 MS.gene33513:intron 45.0%
CAAATGTGACGGCAAACGTT+GGG + chr3.4:82756743-82756762 MS.gene33513:intron 45.0%
CAGAATCCTACCAATAGAGC+TGG - chr3.4:82754494-82754513 None:intergenic 45.0%
CCCTCTTTATGTTGTCATGC+AGG + chr3.4:82755560-82755579 MS.gene33513:intron 45.0%
CTAATGGTGTGTTTGCGAGT+TGG - chr3.4:82756197-82756216 None:intergenic 45.0%
GACAAACATCGTTACCACTG+AGG - chr3.4:82755534-82755553 None:intergenic 45.0%
GACTGGAAAGGTTTGGACAT+TGG + chr3.4:82754451-82754470 MS.gene33513:CDS 45.0%
GCATCTTCTGCCATCAATTC+TGG - chr3.4:82755915-82755934 None:intergenic 45.0%
GCATGACAACATAAAGAGGG+AGG - chr3.4:82755560-82755579 None:intergenic 45.0%
GCTTACCTGTTCTTCTTGTG+CGG + chr3.4:82754825-82754844 MS.gene33513:intron 45.0%
GTATGGTGTCCAAAACGTGT+TGG - chr3.4:82755271-82755290 None:intergenic 45.0%
GTGTTGGATGCAGCATAAAG+TGG + chr3.4:82757721-82757740 MS.gene33513:intron 45.0%
TTGGAGGGAAAACCTTTGGA+GGG - chr3.4:82756171-82756190 None:intergenic 45.0%
TTTGGAGGGAAAACCTTTGG+AGG - chr3.4:82756172-82756191 None:intergenic 45.0%
! GCAATAGATCGTGTTCTGAG+TGG + chr3.4:82757573-82757592 MS.gene33513:CDS 45.0%
! GGTTTTTGCTCTGATGGTAC+CGG - chr3.4:82757603-82757622 None:intergenic 45.0%
! GTACTCCATGCACCATTTTG+TGG + chr3.4:82755363-82755382 MS.gene33513:intron 45.0%
! TTATCGTTTTCCCTCCTCAG+TGG + chr3.4:82755517-82755536 MS.gene33513:intron 45.0%
!! GTTTGCGAGTTGGATTTTGG+AGG - chr3.4:82756187-82756206 None:intergenic 45.0%
!! AAATAAATAAATTAATCAAA+AGG - chr3.4:82757529-82757548 None:intergenic 5.0%
!! ATAAAAATGTTTATATAATT+TGG - chr3.4:82757002-82757021 None:intergenic 5.0%
!!! TTTTTTAATGAATTTTTTAA+TGG - chr3.4:82755089-82755108 None:intergenic 5.0%
AACTTGGAGTTCTGCGTCAC+AGG + chr3.4:82755884-82755903 MS.gene33513:intron 50.0%
AGCCTCTGACTGGAAAGGTT+TGG + chr3.4:82754444-82754463 MS.gene33513:CDS 50.0%
CCGTGGTAAACCAGCTCAAA+CGG - chr3.4:82757393-82757412 None:intergenic 50.0%
CTACACCGCACAAGAAGAAC+AGG - chr3.4:82754833-82754852 None:intergenic 50.0%
GCTCATCCAGCTCTATTGGT+AGG + chr3.4:82754485-82754504 MS.gene33513:intron 50.0%
GTCCAAACCTTTCCAGTCAG+AGG - chr3.4:82754449-82754468 None:intergenic 50.0%
TGAGGCTCATCCAGCTCTAT+TGG + chr3.4:82754481-82754500 MS.gene33513:CDS 50.0%
TGCAGTCACAGGATGTTGCA+CGG + chr3.4:82757197-82757216 MS.gene33513:intron 50.0%
TGTGACGCAGAACTCCAAGT+TGG - chr3.4:82755885-82755904 None:intergenic 50.0%
TTCAGAGCCTCTGACTGGAA+AGG + chr3.4:82754439-82754458 MS.gene33513:CDS 50.0%
! CAGGATGTTGCACGGGATTT+TGG + chr3.4:82757205-82757224 MS.gene33513:CDS 50.0%
! CCGTTTGAGCTGGTTTACCA+CGG + chr3.4:82757390-82757409 MS.gene33513:CDS 50.0%
GCAGTCACAGGATGTTGCAC+GGG + chr3.4:82757198-82757217 MS.gene33513:intron 55.0%
GCCCGTGACACTGACATTGA+TGG - chr3.4:82755247-82755266 None:intergenic 55.0%
TGGAGTTCTGCGTCACAGGA+TGG + chr3.4:82755888-82755907 MS.gene33513:intron 55.0%
! TACTATCACCTGGGGGTGTG+TGG - chr3.4:82755815-82755834 None:intergenic 55.0%
! TCACGGGCACCAACACGTTT+TGG + chr3.4:82755259-82755278 MS.gene33513:intron 55.0%
!! TTTGCTCTGATGGTACCGGC+TGG - chr3.4:82757599-82757618 None:intergenic 55.0%
GCAAGTTTGGCCTGCTGCTG+AGG - chr3.4:82755709-82755728 None:intergenic 60.0%
TGGTCGAAGGCCGTTTGAGC+TGG + chr3.4:82757380-82757399 MS.gene33513:CDS 60.0%
TTCCATAGCCACACACCCCC+AGG + chr3.4:82755804-82755823 MS.gene33513:CDS 60.0%
! TCGTGTTCTGAGTGGCCAGC+CGG + chr3.4:82757581-82757600 MS.gene33513:CDS 60.0%
! CACCTGGGGGTGTGTGGCTA+TGG - chr3.4:82755809-82755828 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 82754437 82757752 82754437 ID=MS.gene33513
chr3.4 mRNA 82754437 82757752 82754437 ID=MS.gene33513.t1;Parent=MS.gene33513
chr3.4 exon 82754437 82754502 82754437 ID=MS.gene33513.t1.exon1;Parent=MS.gene33513.t1
chr3.4 CDS 82754437 82754502 82754437 ID=cds.MS.gene33513.t1;Parent=MS.gene33513.t1
chr3.4 exon 82755582 82755662 82755582 ID=MS.gene33513.t1.exon2;Parent=MS.gene33513.t1
chr3.4 CDS 82755582 82755662 82755582 ID=cds.MS.gene33513.t1;Parent=MS.gene33513.t1
chr3.4 exon 82755772 82755825 82755772 ID=MS.gene33513.t1.exon3;Parent=MS.gene33513.t1
chr3.4 CDS 82755772 82755825 82755772 ID=cds.MS.gene33513.t1;Parent=MS.gene33513.t1
chr3.4 exon 82755906 82755974 82755906 ID=MS.gene33513.t1.exon4;Parent=MS.gene33513.t1
chr3.4 CDS 82755906 82755974 82755906 ID=cds.MS.gene33513.t1;Parent=MS.gene33513.t1
chr3.4 exon 82757202 82757264 82757202 ID=MS.gene33513.t1.exon5;Parent=MS.gene33513.t1
chr3.4 CDS 82757202 82757264 82757202 ID=cds.MS.gene33513.t1;Parent=MS.gene33513.t1
chr3.4 exon 82757378 82757463 82757378 ID=MS.gene33513.t1.exon6;Parent=MS.gene33513.t1
chr3.4 CDS 82757378 82757463 82757378 ID=cds.MS.gene33513.t1;Parent=MS.gene33513.t1
chr3.4 exon 82757560 82757625 82757560 ID=MS.gene33513.t1.exon7;Parent=MS.gene33513.t1
chr3.4 CDS 82757560 82757625 82757560 ID=cds.MS.gene33513.t1;Parent=MS.gene33513.t1
chr3.4 exon 82757734 82757752 82757734 ID=MS.gene33513.t1.exon8;Parent=MS.gene33513.t1
chr3.4 CDS 82757734 82757752 82757734 ID=cds.MS.gene33513.t1;Parent=MS.gene33513.t1
Gene Sequence

>MS.gene33513

CTTTCAGAGCCTCTGACTGGAAAGGTTTGGACATTGGAAGATTTTGAGGCTCATCCAGCTCTATTGGTAGGATTCTGCTTTTTATCATCTTTCTTTGTTTTGCTTACTTTACTCTTTATTTATGTTTCTTGTTCTATGTTAGGCTTAGGCACACTGAATATATGACCCTGCTTAGATAAACAACTTAATTTGTAGCTTACAGTATAAGGGTTTATCATGATAATAGCTTAGTATAAGCTATTTCTTTAGAAAAAGATAAAATTAAATTGTTTTCATATAAGCTATGATAAAATTAAATTGTTTTCATATAAGCTATAAGTTGTTTTCATAAGCTATATACGGGTGTCGCATATATAGGGTTCCCGTTATTTTAGTTTGTTTCTCTTAGGCTTACCTGTTCTTCTTGTGCGGTGTAGCTTTCAATACTATGCTGTTTCTAAAAAAAAAGAGCTATTTTAGAGAACTTATGATAATAAGCTGAAAATAACTTATGAACATGTCACGAGCTATTTTCATAAATCTCCTAAACAGTCTCACAAGTGCTTATGTATGTAGATAAACTCAAATAAGCCAATTCAAATAGGCCCTAGTAAGAATGAGTTCATATGAAATGGGACCAAAATGCAAGCAAGTGAAATTATTATCATATCCATTAAAAAATTCATTAAAAAAAACTTTGGAGAATGCTATTTTGTAAGTAGGTTAGGTTAATTTCTGTTTAGTTATGATATTATCGTGCCTTCATTTTATGAAGCACTGACAACACAATGGACATTTACACAATAAAGCGATTAAATTTGAATGTAACCATCAATGTCAGTGTCACGGGCACCAACACGTTTTGGACACCATACACACCTTCAATCTGAATGCTACGTAGTCTTCATTCATATAAGCTATTTAGTTCCAGCTACAGTGTGCAAAATGTACTCCATGCACCATTTTGTGGTATGTGGCTAAGTTTTATGGACTGTTCTTGTGGTTATTCCTTATGAATTATGATGCATAAAGACTAAAGCATGAGTATTTTGGAAATTCTAATTAAAACTTCTCTTTTGTTGCTTATATTTTGTGGAGATTTTATCGTTTTCCCTCCTCAGTGGTAACGATGTTTGTCTTTCCTCCCTCTTTATGTTGTCATGCAGGTTATGTTTATATGCAACCACTGTCCATTTGTTATACACCTGAAAAAAGTCATTGTAAAGCTTACTGAATTCTATATGAAGGTAGTCAAACAAATTACTGTGGCAAAAGTTTATATATTTCTTTCCTCAGCAGCAGGCCAAACTTGCATAAGTCAAGACCCATTTAATTATTATTTTTGTCTTTCTACAGAAAGGACTTGCTGTCGTTGCTATATCTTCAAATTCCATAGCCACACACCCCCAGGTGATAGTAAATTCATTTCCTGGAATATAGCTACGTTGAAAGTATTGAATGATCGTCCAACTTGGAGTTCTGCGTCACAGGATGGACCAGAATTGATGGCAGAAGATGCTAAATTGTCTGGATATCCTTTTCCATACCTATATGATGAGGTATGATTCAGTAAATTTTAACCTGTTTTAAGTATTCACAATTCACATGGTTTATCGGTTGAACAGATGCCTGCACAGCTATGTCTATTTAATCATGTCTTTATTATATATAACCTGGCAAACATTATTTTTTATCTTGTTCTTTCAATTTTTTTTTTTTAAATGTCAAATATATATGAAAATATAGACTTAACCCTCCAAAGGTTTTCCCTCCAAAATCCAACTCGCAAACACACCATTAGAGAACAAGTAGATTGCATACTCTGTTTAGCTATAATGTGGGTCAAGTTTTACGTCGATATCAATATGATGAAAATACTATAATCCACATCTGTCAATTGGGTTAAGCTCAAAGTTGTCGAAGCCTAAGACATCACCAAGAAAATATGTGATCTATACTTTATCTCCTTGTTAAAACATGTGTGCGTAGAAAGGTAACATATTATAAAGAAAAGGGTAAAAAACATCTGTAGGCTTCAACTTCTCTTAGGTAGCAGTCAAACATTGCTCTTTAATAAGTATTTAATTGACAAAATAATTTGTTTCTTTTTTTGGTAGGAAAGAGGGCTTAAGCCCAAAATAATTAGCTTCTTTGCTATAACTAAAGTGTTTTAGTGAGTATATTGTGTTCAAAATTATTTGAACTCAACACTTAAAGGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTCAGCATCTATCATGTTGTTCAAAACATGATCAAACATCATCCATATTTGATCATGTGTTGTAAACAAATGTGACGGCAAACGTTGGGTAAATATTTGTTGTCCCTTTATACAAATTTGTTACTCTTTATTGATGTTTTCTTTAGCTCAATCAAAGTGGTACTTAACAATTGGTACACATCATAAATTTATTTATACTGTGGTATTGTGATTTATTGTTAAACTTTGTTAATCCAAATCACATAAACATTGGTACACAAAATTGTAAATCGTACGAAACTAAAGCATAATATGGCACTATATAGATAAGTTTAGTGCTTTTCCAAATTATATAAACATTTTTATCCTAAAACTGAGAGCTGATAGCATGATATTACTTAATTGAAATCGAATCGTTACTGTAGAAGATCTTTTACCTGATGGGGTTAATTGAAAGCAACCAATTTACTGAAGATTTGAAGTTATCTATGCCAGTAATATAATATAATAAAACCCTGATCTTTAGTGGAATGTCCTTTATTGCAGTCACAGGATGTTGCACGGGATTTTGGAGCAGTTTGTACACCAGAATTTTACCTTTTTAAAAAGGTATTTACAACCAGTCACTGTTGATCAGTGTTTCTTTGATTTATGTTAAGTTAAACCCTCAGATGTCAAGGTATGATGTATTTTCTATCAATTAATTAATCAAATAATAACAGGATGGTCGAAGGCCGTTTGAGCTGGTTTACCACGGTCAGTTTGATGATTCAAGGCCAAGTAATAATAACATACCAGTAACTGGAAGGTTTGTTTCGTATAACTGAATTAGCATATCTTAACATTTTTAATCTCTTGAAAGTAGTATAACCTTTTGATTAATTTATTTATTTTATTTCAAAAGAGACTTGAGCTTGGCAATAGATCGTGTTCTGAGTGGCCAGCCGGTACCATCAGAGCAAAAACCTAGGTACTTTTACATTTAATTCTCCTTTTGATTGTTTGAGAAAATTTCAGTTTATGGTCTCCATCAATGTCATGGTCATATTTTCCTGTTTGCATGAAGTGTTGGATGCAGCATAAAGTGGCACCCATGA

Protein sequence

>MS.gene33513.t1

LSEPLTGKVWTLEDFEAHPALLVMFICNHCPFVIHLKKVIVKLTEFYMKKGLAVVAISSNSIATHPQDGPELMAEDAKLSGYPFPYLYDESQDVARDFGAVCTPEFYLFKKDGRRPFELVYHGQFDDSRPSNNNIPVTGRDLSLAIDRVLSGQPVPSEQKPSIKWHP