AlfalfaGEDB | MS.gene33513

M. sativa cultivar XinJiangDaYe / MS.gene33513

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008150 GO:0009987 GO:0016491 GO:0019725 GO:0042592 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008
PFAM: PF08534.13

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33513.t1	XP_013461392.1	95.3	171	4	1	1	167	6	176	3.40E-90	340.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33513.t1	A0A072V0V0	95.3	171	4	1	1	167	6	176	2.4e-90	340.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene33513	0.81687	4.43E-52	-1.69E-46
MS.gene049171	MS.gene33513	0.855178	7.51E-62	-1.69E-46
MS.gene049173	MS.gene33513	0.844515	7.21E-59	-1.69E-46
MS.gene049217	MS.gene33513	0.832574	8.75E-56	-1.69E-46
MS.gene049222	MS.gene33513	0.848359	6.44E-60	-1.69E-46
MS.gene049285	MS.gene33513	0.840131	1.05E-57	-1.69E-46
MS.gene049320	MS.gene33513	0.81619	6.28E-52	-1.69E-46
MS.gene049427	MS.gene33513	0.816824	4.53E-52	-1.69E-46
MS.gene049609	MS.gene33513	0.853089	3.01E-61	-1.69E-46
MS.gene049627	MS.gene33513	0.8135	2.48E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33513.t1	MTR_3g090490	95.322	171	4	1	1	167	79	249	5.55e-121	341
MS.gene33513.t1	MTR_3g090490	95.322	171	4	1	1	167	6	176	1.50e-120	337
MS.gene33513.t1	MTR_3g090490	94.595	148	4	1	24	167	1	148	2.52e-102	290

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33513.t1	AT1G21350	81.287	171	27	2	1	167	79	248	2.13e-100	289
MS.gene33513.t1	AT1G21350	81.287	171	27	2	1	167	92	261	2.68e-100	290
MS.gene33513.t1	AT1G21350	83.108	148	20	2	24	167	1	147	1.76e-87	253
MS.gene33513.t1	AT1G21350	83.108	148	20	2	24	167	1	147	1.76e-87	253
MS.gene33513.t1	AT1G21350	67.251	171	24	3	1	167	79	221	1.15e-74	223

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Find 33 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATAATAACAGGATGGTCGA+AGG	0.587773	3.4:+82757367	MS.gene33513:intron
AATAATAACATACCAGTAAC+TGG	0.338409	3.4:+82757438	MS.gene33513:CDS
ACAGGATGGACCAGAATTGA+TGG	0.497097	3.4:+82755902	MS.gene33513:intron
ACGGTCAGTTTGATGATTCA+AGG	0.467280	3.4:+82757409	MS.gene33513:CDS
ACTGGTATGTTATTATTACT+TGG	0.444749	3.4:-82757432	None:intergenic
AGCCTCTGACTGGAAAGGTT+TGG	0.435430	3.4:+82754444	MS.gene33513:CDS
ATAACATACCAGTAACTGGA+AGG	0.643706	3.4:+82757442	MS.gene33513:CDS
CAGAATCCTACCAATAGAGC+TGG	0.507380	3.4:-82754491	None:intergenic
CAGGATGTTGCACGGGATTT+TGG	0.149216	3.4:+82757205	MS.gene33513:CDS
CATACCTCATCATATAGGTA+TGG	0.528343	3.4:-82755957	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGGTAAAAAACATCTGT+AGG	+	chr3.4:82756426-82756445	MS.gene33513:intron	30.0%
AAATATGACCATGACATTGA+TGG	-	chr3.4:82757686-82757705	None:intergenic	30.0%
AATAAAACCCTGATCTTTAG+TGG	+	chr3.4:82757162-82757181	MS.gene33513:intron	30.0%
AATGAATTTACTATCACCTG+GGG	-	chr3.4:82755823-82755842	None:intergenic	30.0%
ACTCTGTTTAGCTATAATGT+GGG	+	chr3.4:82756235-82756254	MS.gene33513:intron	30.0%
ATAATCCACATCTGTCAATT+GGG	+	chr3.4:82756295-82756314	MS.gene33513:intron	30.0%
CATATGAACTCATTCTTACT+AGG	-	chr3.4:82755025-82755044	None:intergenic	30.0%
GAAATGAATTTACTATCACC+TGG	-	chr3.4:82755825-82755844	None:intergenic	30.0%
GCTTACTGAATTCTATATGA+AGG	+	chr3.4:82755641-82755660	MS.gene33513:CDS	30.0%
GTACCAATGTTTATGTGATT+TGG	-	chr3.4:82756913-82756932	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	82754437	82757752	82754437	ID=MS.gene33513
chr3.4	mRNA	82754437	82757752	82754437	ID=MS.gene33513.t1;Parent=MS.gene33513
chr3.4	exon	82754437	82754502	82754437	ID=MS.gene33513.t1.exon1;Parent=MS.gene33513.t1
chr3.4	CDS	82754437	82754502	82754437	ID=cds.MS.gene33513.t1;Parent=MS.gene33513.t1
chr3.4	exon	82755582	82755662	82755582	ID=MS.gene33513.t1.exon2;Parent=MS.gene33513.t1
chr3.4	CDS	82755582	82755662	82755582	ID=cds.MS.gene33513.t1;Parent=MS.gene33513.t1
chr3.4	exon	82755772	82755825	82755772	ID=MS.gene33513.t1.exon3;Parent=MS.gene33513.t1
chr3.4	CDS	82755772	82755825	82755772	ID=cds.MS.gene33513.t1;Parent=MS.gene33513.t1
chr3.4	exon	82755906	82755974	82755906	ID=MS.gene33513.t1.exon4;Parent=MS.gene33513.t1
chr3.4	CDS	82755906	82755974	82755906	ID=cds.MS.gene33513.t1;Parent=MS.gene33513.t1
chr3.4	exon	82757202	82757264	82757202	ID=MS.gene33513.t1.exon5;Parent=MS.gene33513.t1
chr3.4	CDS	82757202	82757264	82757202	ID=cds.MS.gene33513.t1;Parent=MS.gene33513.t1
chr3.4	exon	82757378	82757463	82757378	ID=MS.gene33513.t1.exon6;Parent=MS.gene33513.t1
chr3.4	CDS	82757378	82757463	82757378	ID=cds.MS.gene33513.t1;Parent=MS.gene33513.t1
chr3.4	exon	82757560	82757625	82757560	ID=MS.gene33513.t1.exon7;Parent=MS.gene33513.t1
chr3.4	CDS	82757560	82757625	82757560	ID=cds.MS.gene33513.t1;Parent=MS.gene33513.t1
chr3.4	exon	82757734	82757752	82757734	ID=MS.gene33513.t1.exon8;Parent=MS.gene33513.t1
chr3.4	CDS	82757734	82757752	82757734	ID=cds.MS.gene33513.t1;Parent=MS.gene33513.t1

Gene Sequence

>MS.gene33513

CTTTCAGAGCCTCTGACTGGAAAGGTTTGGACATTGGAAGATTTTGAGGCTCATCCAGCTCTATTGGTAGGATTCTGCTTTTTATCATCTTTCTTTGTTTTGCTTACTTTACTCTTTATTTATGTTTCTTGTTCTATGTTAGGCTTAGGCACACTGAATATATGACCCTGCTTAGATAAACAACTTAATTTGTAGCTTACAGTATAAGGGTTTATCATGATAATAGCTTAGTATAAGCTATTTCTTTAGAAAAAGATAAAATTAAATTGTTTTCATATAAGCTATGATAAAATTAAATTGTTTTCATATAAGCTATAAGTTGTTTTCATAAGCTATATACGGGTGTCGCATATATAGGGTTCCCGTTATTTTAGTTTGTTTCTCTTAGGCTTACCTGTTCTTCTTGTGCGGTGTAGCTTTCAATACTATGCTGTTTCTAAAAAAAAAGAGCTATTTTAGAGAACTTATGATAATAAGCTGAAAATAACTTATGAACATGTCACGAGCTATTTTCATAAATCTCCTAAACAGTCTCACAAGTGCTTATGTATGTAGATAAACTCAAATAAGCCAATTCAAATAGGCCCTAGTAAGAATGAGTTCATATGAAATGGGACCAAAATGCAAGCAAGTGAAATTATTATCATATCCATTAAAAAATTCATTAAAAAAAACTTTGGAGAATGCTATTTTGTAAGTAGGTTAGGTTAATTTCTGTTTAGTTATGATATTATCGTGCCTTCATTTTATGAAGCACTGACAACACAATGGACATTTACACAATAAAGCGATTAAATTTGAATGTAACCATCAATGTCAGTGTCACGGGCACCAACACGTTTTGGACACCATACACACCTTCAATCTGAATGCTACGTAGTCTTCATTCATATAAGCTATTTAGTTCCAGCTACAGTGTGCAAAATGTACTCCATGCACCATTTTGTGGTATGTGGCTAAGTTTTATGGACTGTTCTTGTGGTTATTCCTTATGAATTATGATGCATAAAGACTAAAGCATGAGTATTTTGGAAATTCTAATTAAAACTTCTCTTTTGTTGCTTATATTTTGTGGAGATTTTATCGTTTTCCCTCCTCAGTGGTAACGATGTTTGTCTTTCCTCCCTCTTTATGTTGTCATGCAGGTTATGTTTATATGCAACCACTGTCCATTTGTTATACACCTGAAAAAAGTCATTGTAAAGCTTACTGAATTCTATATGAAGGTAGTCAAACAAATTACTGTGGCAAAAGTTTATATATTTCTTTCCTCAGCAGCAGGCCAAACTTGCATAAGTCAAGACCCATTTAATTATTATTTTTGTCTTTCTACAGAAAGGACTTGCTGTCGTTGCTATATCTTCAAATTCCATAGCCACACACCCCCAGGTGATAGTAAATTCATTTCCTGGAATATAGCTACGTTGAAAGTATTGAATGATCGTCCAACTTGGAGTTCTGCGTCACAGGATGGACCAGAATTGATGGCAGAAGATGCTAAATTGTCTGGATATCCTTTTCCATACCTATATGATGAGGTATGATTCAGTAAATTTTAACCTGTTTTAAGTATTCACAATTCACATGGTTTATCGGTTGAACAGATGCCTGCACAGCTATGTCTATTTAATCATGTCTTTATTATATATAACCTGGCAAACATTATTTTTTATCTTGTTCTTTCAATTTTTTTTTTTTAAATGTCAAATATATATGAAAATATAGACTTAACCCTCCAAAGGTTTTCCCTCCAAAATCCAACTCGCAAACACACCATTAGAGAACAAGTAGATTGCATACTCTGTTTAGCTATAATGTGGGTCAAGTTTTACGTCGATATCAATATGATGAAAATACTATAATCCACATCTGTCAATTGGGTTAAGCTCAAAGTTGTCGAAGCCTAAGACATCACCAAGAAAATATGTGATCTATACTTTATCTCCTTGTTAAAACATGTGTGCGTAGAAAGGTAACATATTATAAAGAAAAGGGTAAAAAACATCTGTAGGCTTCAACTTCTCTTAGGTAGCAGTCAAACATTGCTCTTTAATAAGTATTTAATTGACAAAATAATTTGTTTCTTTTTTTGGTAGGAAAGAGGGCTTAAGCCCAAAATAATTAGCTTCTTTGCTATAACTAAAGTGTTTTAGTGAGTATATTGTGTTCAAAATTATTTGAACTCAACACTTAAAGGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTCAGCATCTATCATGTTGTTCAAAACATGATCAAACATCATCCATATTTGATCATGTGTTGTAAACAAATGTGACGGCAAACGTTGGGTAAATATTTGTTGTCCCTTTATACAAATTTGTTACTCTTTATTGATGTTTTCTTTAGCTCAATCAAAGTGGTACTTAACAATTGGTACACATCATAAATTTATTTATACTGTGGTATTGTGATTTATTGTTAAACTTTGTTAATCCAAATCACATAAACATTGGTACACAAAATTGTAAATCGTACGAAACTAAAGCATAATATGGCACTATATAGATAAGTTTAGTGCTTTTCCAAATTATATAAACATTTTTATCCTAAAACTGAGAGCTGATAGCATGATATTACTTAATTGAAATCGAATCGTTACTGTAGAAGATCTTTTACCTGATGGGGTTAATTGAAAGCAACCAATTTACTGAAGATTTGAAGTTATCTATGCCAGTAATATAATATAATAAAACCCTGATCTTTAGTGGAATGTCCTTTATTGCAGTCACAGGATGTTGCACGGGATTTTGGAGCAGTTTGTACACCAGAATTTTACCTTTTTAAAAAGGTATTTACAACCAGTCACTGTTGATCAGTGTTTCTTTGATTTATGTTAAGTTAAACCCTCAGATGTCAAGGTATGATGTATTTTCTATCAATTAATTAATCAAATAATAACAGGATGGTCGAAGGCCGTTTGAGCTGGTTTACCACGGTCAGTTTGATGATTCAAGGCCAAGTAATAATAACATACCAGTAACTGGAAGGTTTGTTTCGTATAACTGAATTAGCATATCTTAACATTTTTAATCTCTTGAAAGTAGTATAACCTTTTGATTAATTTATTTATTTTATTTCAAAAGAGACTTGAGCTTGGCAATAGATCGTGTTCTGAGTGGCCAGCCGGTACCATCAGAGCAAAAACCTAGGTACTTTTACATTTAATTCTCCTTTTGATTGTTTGAGAAAATTTCAGTTTATGGTCTCCATCAATGTCATGGTCATATTTTCCTGTTTGCATGAAGTGTTGGATGCAGCATAAAGTGGCACCCATGA

Protein sequence

>MS.gene33513.t1

LSEPLTGKVWTLEDFEAHPALLVMFICNHCPFVIHLKKVIVKLTEFYMKKGLAVVAISSNSIATHPQDGPELMAEDAKLSGYPFPYLYDESQDVARDFGAVCTPEFYLFKKDGRRPFELVYHGQFDDSRPSNNNIPVTGRDLSLAIDRVLSGQPVPSEQKPSIKWHP