Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69749.t1 | XP_013461117.1 | 93.2 | 411 | 28 | 0 | 1 | 411 | 1 | 411 | 8.50E-228 | 799.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69749.t1 | Q67ZU1 | 44.6 | 415 | 217 | 5 | 1 | 408 | 6 | 414 | 2.9e-99 | 363.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69749.t1 | A0A072V0B6 | 93.2 | 411 | 28 | 0 | 1 | 411 | 1 | 411 | 6.1e-228 | 799.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene69749 | 0.844538 | 7.11E-59 | -1.69E-46 |
| MS.gene049217 | MS.gene69749 | 0.812676 | 3.76E-51 | -1.69E-46 |
| MS.gene049222 | MS.gene69749 | 0.867443 | 1.36E-65 | -1.69E-46 |
| MS.gene049232 | MS.gene69749 | 0.84357 | 1.29E-58 | -1.69E-46 |
| MS.gene049285 | MS.gene69749 | 0.851314 | 9.62E-61 | -1.69E-46 |
| MS.gene049320 | MS.gene69749 | 0.845118 | 4.96E-59 | -1.69E-46 |
| MS.gene049609 | MS.gene69749 | 0.83621 | 1.07E-56 | -1.69E-46 |
| MS.gene049633 | MS.gene69749 | 0.84582 | 3.20E-59 | -1.69E-46 |
| MS.gene05010 | MS.gene69749 | 0.811536 | 6.66E-51 | -1.69E-46 |
| MS.gene050170 | MS.gene69749 | 0.867162 | 1.68E-65 | -1.69E-46 |
| MS.gene050323 | MS.gene69749 | 0.879606 | 1.09E-69 | -1.69E-46 |
| MS.gene050333 | MS.gene69749 | 0.804797 | 1.82E-49 | -1.69E-46 |
| MS.gene050338 | MS.gene69749 | -0.817736 | 2.83E-52 | -1.69E-46 |
| MS.gene050444 | MS.gene69749 | 0.82562 | 4.25E-54 | -1.69E-46 |
| MS.gene050496 | MS.gene69749 | 0.85905 | 5.41E-63 | -1.69E-46 |
| MS.gene050504 | MS.gene69749 | 0.842555 | 2.41E-58 | -1.69E-46 |
| MS.gene050518 | MS.gene69749 | 0.812701 | 3.71E-51 | -1.69E-46 |
| MS.gene050577 | MS.gene69749 | 0.843021 | 1.81E-58 | -1.69E-46 |
| MS.gene050612 | MS.gene69749 | 0.827589 | 1.44E-54 | -1.69E-46 |
| MS.gene050662 | MS.gene69749 | 0.802307 | 5.97E-49 | -1.69E-46 |
| MS.gene050675 | MS.gene69749 | 0.829053 | 6.38E-55 | -1.69E-46 |
| MS.gene050697 | MS.gene69749 | 0.801582 | 8.41E-49 | -1.69E-46 |
| MS.gene050699 | MS.gene69749 | 0.829336 | 5.45E-55 | -1.69E-46 |
| MS.gene050747 | MS.gene69749 | 0.835513 | 1.61E-56 | -1.69E-46 |
| MS.gene050772 | MS.gene69749 | 0.854957 | 8.70E-62 | -1.69E-46 |
| MS.gene05080 | MS.gene69749 | 0.834083 | 3.68E-56 | -1.69E-46 |
| MS.gene050868 | MS.gene69749 | 0.864471 | 1.19E-64 | -1.69E-46 |
| MS.gene050871 | MS.gene69749 | 0.864043 | 1.61E-64 | -1.69E-46 |
| MS.gene050904 | MS.gene69749 | 0.81484 | 1.25E-51 | -1.69E-46 |
| MS.gene050950 | MS.gene69749 | 0.831486 | 1.62E-55 | -1.69E-46 |
| MS.gene050986 | MS.gene69749 | 0.80229 | 6.02E-49 | -1.69E-46 |
| MS.gene051268 | MS.gene69749 | 0.816815 | 4.55E-52 | -1.69E-46 |
| MS.gene051317 | MS.gene69749 | 0.823191 | 1.58E-53 | -1.69E-46 |
| MS.gene051551 | MS.gene69749 | 0.804909 | 1.72E-49 | -1.69E-46 |
| MS.gene051838 | MS.gene69749 | 0.837947 | 3.85E-57 | -1.69E-46 |
| MS.gene051858 | MS.gene69749 | 0.825548 | 4.42E-54 | -1.69E-46 |
| MS.gene052164 | MS.gene69749 | 0.831125 | 1.99E-55 | -1.69E-46 |
| MS.gene052482 | MS.gene69749 | 0.838585 | 2.64E-57 | -1.69E-46 |
| MS.gene052486 | MS.gene69749 | 0.843228 | 1.59E-58 | -1.69E-46 |
| MS.gene052503 | MS.gene69749 | 0.851651 | 7.73E-61 | -1.69E-46 |
| MS.gene052504 | MS.gene69749 | 0.8136 | 2.36E-51 | -1.69E-46 |
| MS.gene052506 | MS.gene69749 | 0.855753 | 5.11E-62 | -1.69E-46 |
| MS.gene052615 | MS.gene69749 | 0.825899 | 3.64E-54 | -1.69E-46 |
| MS.gene052820 | MS.gene69749 | 0.809409 | 1.92E-50 | -1.69E-46 |
| MS.gene052822 | MS.gene69749 | 0.857942 | 1.16E-62 | -1.69E-46 |
| MS.gene052823 | MS.gene69749 | 0.853701 | 2.01E-61 | -1.69E-46 |
| MS.gene052825 | MS.gene69749 | 0.849149 | 3.89E-60 | -1.69E-46 |
| MS.gene052870 | MS.gene69749 | 0.810749 | 9.87E-51 | -1.69E-46 |
| MS.gene052872 | MS.gene69749 | 0.834038 | 3.78E-56 | -1.69E-46 |
| MS.gene052916 | MS.gene69749 | 0.815994 | 6.95E-52 | -1.69E-46 |
| MS.gene052966 | MS.gene69749 | 0.822444 | 2.36E-53 | -1.69E-46 |
| MS.gene052987 | MS.gene69749 | 0.800907 | 1.16E-48 | -1.69E-46 |
| MS.gene053203 | MS.gene69749 | 0.846063 | 2.75E-59 | -1.69E-46 |
| MS.gene053213 | MS.gene69749 | 0.834091 | 3.66E-56 | -1.69E-46 |
| MS.gene053286 | MS.gene69749 | 0.833281 | 5.83E-56 | -1.69E-46 |
| MS.gene053421 | MS.gene69749 | -0.810943 | 8.97E-51 | -1.69E-46 |
| MS.gene053436 | MS.gene69749 | 0.805961 | 1.04E-49 | -1.69E-46 |
| MS.gene053479 | MS.gene69749 | 0.842715 | 2.18E-58 | -1.69E-46 |
| MS.gene053480 | MS.gene69749 | 0.842194 | 3.00E-58 | -1.69E-46 |
| MS.gene053574 | MS.gene69749 | 0.854641 | 1.08E-61 | -1.69E-46 |
| MS.gene053626 | MS.gene69749 | 0.818603 | 1.80E-52 | -1.69E-46 |
| MS.gene053632 | MS.gene69749 | 0.816793 | 4.60E-52 | -1.69E-46 |
| MS.gene053633 | MS.gene69749 | 0.825217 | 5.29E-54 | -1.69E-46 |
| MS.gene053824 | MS.gene69749 | 0.862571 | 4.61E-64 | -1.69E-46 |
| MS.gene053916 | MS.gene69749 | 0.817604 | 3.03E-52 | -1.69E-46 |
| MS.gene054003 | MS.gene69749 | 0.842611 | 2.33E-58 | -1.69E-46 |
| MS.gene054595 | MS.gene69749 | 0.81605 | 6.75E-52 | -1.69E-46 |
| MS.gene054600 | MS.gene69749 | 0.80851 | 2.99E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene69749 | 0.82994 | 3.89E-55 | -1.69E-46 |
| MS.gene054706 | MS.gene69749 | -0.814075 | 1.85E-51 | -1.69E-46 |
| MS.gene05470 | MS.gene69749 | 0.834949 | 2.23E-56 | -1.69E-46 |
| MS.gene05494 | MS.gene69749 | 0.809787 | 1.59E-50 | -1.69E-46 |
| MS.gene054954 | MS.gene69749 | 0.854559 | 1.14E-61 | -1.69E-46 |
| MS.gene05505 | MS.gene69749 | 0.807028 | 6.17E-50 | -1.69E-46 |
| MS.gene055206 | MS.gene69749 | 0.824443 | 8.05E-54 | -1.69E-46 |
| MS.gene055224 | MS.gene69749 | 0.815003 | 1.15E-51 | -1.69E-46 |
| MS.gene055289 | MS.gene69749 | 0.802471 | 5.52E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene69749 | 0.836626 | 8.38E-57 | -1.69E-46 |
| MS.gene055502 | MS.gene69749 | 0.862187 | 6.05E-64 | -1.69E-46 |
| MS.gene055577 | MS.gene69749 | 0.865634 | 5.12E-65 | -1.69E-46 |
| MS.gene055722 | MS.gene69749 | 0.819952 | 8.86E-53 | -1.69E-46 |
| MS.gene055748 | MS.gene69749 | 0.818829 | 1.60E-52 | -1.69E-46 |
| MS.gene055750 | MS.gene69749 | 0.842666 | 2.25E-58 | -1.69E-46 |
| MS.gene055751 | MS.gene69749 | 0.827701 | 1.35E-54 | -1.69E-46 |
| MS.gene05589 | MS.gene69749 | 0.855613 | 5.61E-62 | -1.69E-46 |
| MS.gene055941 | MS.gene69749 | 0.837849 | 4.08E-57 | -1.69E-46 |
| MS.gene056046 | MS.gene69749 | 0.858152 | 1.00E-62 | -1.69E-46 |
| MS.gene056387 | MS.gene69749 | 0.854686 | 1.04E-61 | -1.69E-46 |
| MS.gene056448 | MS.gene69749 | 0.814932 | 1.20E-51 | -1.69E-46 |
| MS.gene056487 | MS.gene69749 | 0.808745 | 2.66E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene69749 | 0.875259 | 3.55E-68 | -1.69E-46 |
| MS.gene056510 | MS.gene69749 | 0.847299 | 1.26E-59 | -1.69E-46 |
| MS.gene056618 | MS.gene69749 | -0.817457 | 3.26E-52 | -1.69E-46 |
| MS.gene056657 | MS.gene69749 | 0.853686 | 2.03E-61 | -1.69E-46 |
| MS.gene056692 | MS.gene69749 | 0.85517 | 7.55E-62 | -1.69E-46 |
| MS.gene056898 | MS.gene69749 | 0.812204 | 4.77E-51 | -1.69E-46 |
| MS.gene057076 | MS.gene69749 | 0.84941 | 3.29E-60 | -1.69E-46 |
| MS.gene057416 | MS.gene69749 | 0.803695 | 3.08E-49 | -1.69E-46 |
| MS.gene057658 | MS.gene69749 | 0.821317 | 4.31E-53 | -1.69E-46 |
| MS.gene057734 | MS.gene69749 | 0.801619 | 8.27E-49 | -1.69E-46 |
| MS.gene057831 | MS.gene69749 | 0.826439 | 2.71E-54 | -1.69E-46 |
| MS.gene057856 | MS.gene69749 | 0.809266 | 2.06E-50 | -1.69E-46 |
| MS.gene057857 | MS.gene69749 | 0.858325 | 8.91E-63 | -1.69E-46 |
| MS.gene05787 | MS.gene69749 | 0.817221 | 3.69E-52 | -1.69E-46 |
| MS.gene058157 | MS.gene69749 | 0.850729 | 1.41E-60 | -1.69E-46 |
| MS.gene058334 | MS.gene69749 | -0.824666 | 7.14E-54 | -1.69E-46 |
| MS.gene058338 | MS.gene69749 | 0.830732 | 2.49E-55 | -1.69E-46 |
| MS.gene05837 | MS.gene69749 | 0.840033 | 1.11E-57 | -1.69E-46 |
| MS.gene058382 | MS.gene69749 | -0.84568 | 3.49E-59 | -1.69E-46 |
| MS.gene058419 | MS.gene69749 | 0.855032 | 8.28E-62 | -1.69E-46 |
| MS.gene058544 | MS.gene69749 | 0.826202 | 3.09E-54 | -1.69E-46 |
| MS.gene058723 | MS.gene69749 | 0.80135 | 9.39E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene69749 | 0.822084 | 2.86E-53 | -1.69E-46 |
| MS.gene058838 | MS.gene69749 | 0.848368 | 6.41E-60 | -1.69E-46 |
| MS.gene059022 | MS.gene69749 | 0.831029 | 2.10E-55 | -1.69E-46 |
| MS.gene059023 | MS.gene69749 | 0.856111 | 4.01E-62 | -1.69E-46 |
| MS.gene05913 | MS.gene69749 | 0.8338 | 4.33E-56 | -1.69E-46 |
| MS.gene05934 | MS.gene69749 | 0.826194 | 3.10E-54 | -1.69E-46 |
| MS.gene059667 | MS.gene69749 | 0.827962 | 1.17E-54 | -1.69E-46 |
| MS.gene059677 | MS.gene69749 | 0.841343 | 5.03E-58 | -1.69E-46 |
| MS.gene059699 | MS.gene69749 | -0.817627 | 2.99E-52 | -1.69E-46 |
| MS.gene059703 | MS.gene69749 | -0.82317 | 1.60E-53 | -1.69E-46 |
| MS.gene059718 | MS.gene69749 | 0.855731 | 5.18E-62 | -1.69E-46 |
| MS.gene059756 | MS.gene69749 | 0.817017 | 4.10E-52 | -1.69E-46 |
| MS.gene059801 | MS.gene69749 | 0.805894 | 1.07E-49 | -1.69E-46 |
| MS.gene059837 | MS.gene69749 | 0.802608 | 5.18E-49 | -1.69E-46 |
| MS.gene059865 | MS.gene69749 | 0.856293 | 3.55E-62 | -1.69E-46 |
| MS.gene059902 | MS.gene69749 | 0.813721 | 2.22E-51 | -1.69E-46 |
| MS.gene05995 | MS.gene69749 | 0.812057 | 5.13E-51 | -1.69E-46 |
| MS.gene05996 | MS.gene69749 | 0.817055 | 4.02E-52 | -1.69E-46 |
| MS.gene06000 | MS.gene69749 | 0.834876 | 2.33E-56 | -1.69E-46 |
| MS.gene060482 | MS.gene69749 | 0.816762 | 4.68E-52 | -1.69E-46 |
| MS.gene060595 | MS.gene69749 | -0.810705 | 1.01E-50 | -1.69E-46 |
| MS.gene060703 | MS.gene69749 | 0.841801 | 3.81E-58 | -1.69E-46 |
| MS.gene060762 | MS.gene69749 | 0.860618 | 1.82E-63 | -1.69E-46 |
| MS.gene060778 | MS.gene69749 | 0.840918 | 6.51E-58 | -1.69E-46 |
| MS.gene06077 | MS.gene69749 | 0.847334 | 1.23E-59 | -1.69E-46 |
| MS.gene060823 | MS.gene69749 | -0.803593 | 3.24E-49 | -1.69E-46 |
| MS.gene060835 | MS.gene69749 | 0.811503 | 6.78E-51 | -1.69E-46 |
| MS.gene06092 | MS.gene69749 | 0.806521 | 7.90E-50 | -1.69E-46 |
| MS.gene060982 | MS.gene69749 | 0.868096 | 8.41E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69749.t1 | MTR_3g081060 | 93.187 | 411 | 28 | 0 | 1 | 411 | 1 | 411 | 0.0 | 805 |
| MS.gene69749.t1 | MTR_3g081040 | 79.442 | 394 | 78 | 2 | 18 | 411 | 16 | 406 | 0.0 | 665 |
| MS.gene69749.t1 | MTR_7g081050 | 76.355 | 406 | 92 | 3 | 6 | 411 | 4 | 405 | 0.0 | 661 |
| MS.gene69749.t1 | MTR_3g080980 | 69.458 | 406 | 121 | 3 | 6 | 411 | 3 | 405 | 0.0 | 586 |
| MS.gene69749.t1 | MTR_6g033965 | 64.109 | 404 | 140 | 4 | 8 | 411 | 6 | 404 | 0.0 | 527 |
| MS.gene69749.t1 | MTR_7g081060 | 63.433 | 402 | 143 | 4 | 8 | 409 | 6 | 403 | 0.0 | 527 |
| MS.gene69749.t1 | MTR_6g033975 | 61.881 | 404 | 148 | 5 | 8 | 411 | 6 | 403 | 2.43e-176 | 498 |
| MS.gene69749.t1 | MTR_5g084950 | 52.239 | 402 | 184 | 5 | 9 | 409 | 6 | 400 | 3.70e-152 | 436 |
| MS.gene69749.t1 | MTR_7g029365 | 46.845 | 412 | 214 | 3 | 1 | 409 | 1 | 410 | 1.25e-131 | 385 |
| MS.gene69749.t1 | MTR_6g023740 | 43.489 | 407 | 221 | 4 | 7 | 408 | 9 | 411 | 3.90e-121 | 358 |
| MS.gene69749.t1 | MTR_6g023715 | 43.864 | 383 | 190 | 6 | 31 | 408 | 30 | 392 | 1.80e-113 | 338 |
| MS.gene69749.t1 | MTR_6g023750 | 45.584 | 351 | 185 | 3 | 63 | 408 | 5 | 354 | 1.42e-109 | 326 |
| MS.gene69749.t1 | MTR_1g107330 | 40.360 | 389 | 216 | 6 | 30 | 410 | 18 | 398 | 3.02e-100 | 304 |
| MS.gene69749.t1 | MTR_7g029365 | 48.667 | 300 | 147 | 4 | 8 | 304 | 11 | 306 | 1.30e-90 | 276 |
| MS.gene69749.t1 | MTR_0595s0010 | 50.971 | 206 | 92 | 3 | 32 | 232 | 35 | 236 | 6.21e-69 | 221 |
| MS.gene69749.t1 | MTR_1g107330 | 39.929 | 283 | 160 | 4 | 30 | 304 | 18 | 298 | 2.05e-66 | 215 |
| MS.gene69749.t1 | MTR_5g006650 | 51.176 | 170 | 70 | 4 | 69 | 233 | 44 | 205 | 4.10e-47 | 161 |
| MS.gene69749.t1 | MTR_3g081000 | 48.039 | 102 | 19 | 2 | 304 | 405 | 5 | 72 | 2.95e-20 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69749.t1 | AT5G14180 | 44.471 | 416 | 218 | 5 | 1 | 409 | 6 | 415 | 1.57e-126 | 372 |
| MS.gene69749.t1 | AT2G15230 | 43.003 | 393 | 198 | 8 | 27 | 410 | 11 | 386 | 4.48e-107 | 321 |
| MS.gene69749.t1 | AT5G14180 | 46.452 | 310 | 164 | 2 | 100 | 409 | 8 | 315 | 7.09e-101 | 303 |
| MS.gene69749.t1 | AT5G14180 | 46.732 | 306 | 161 | 2 | 104 | 409 | 3 | 306 | 2.14e-100 | 301 |
| MS.gene69749.t1 | AT5G14180 | 43.087 | 311 | 165 | 4 | 1 | 304 | 6 | 311 | 5.74e-88 | 270 |
| MS.gene69749.t1 | AT5G14180 | 41.786 | 280 | 151 | 4 | 1 | 273 | 6 | 280 | 7.83e-72 | 228 |
Find 74 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGGAATTCACTAGGGATTT+TGG | 0.196713 | 3.4:+77113375 | None:intergenic |
| GAAGAATTTATGCAGCAATT+TGG | 0.255763 | 3.4:+77114014 | None:intergenic |
| GCCCTCCATAGCTGAGAAAA+AGG | 0.264049 | 3.4:+77113353 | None:intergenic |
| ATAAATCCCAATGATTCTTC+TGG | 0.296588 | 3.4:+77115253 | None:intergenic |
| TAATGTAACAGGATATATAT+TGG | 0.314959 | 3.4:-77114392 | MS.gene69749:intron |
| TCTAAAGTACCTGTGAATAA+TGG | 0.370637 | 3.4:+77114149 | None:intergenic |
| ATTCTAATGAGCAGGGATAT+TGG | 0.385779 | 3.4:-77114233 | MS.gene69749:intron |
| TTCTTTGTTGCGGTTGGTTG+AGG | 0.386565 | 3.4:+77113963 | None:intergenic |
| CAATATGTGTACAACTATAC+TGG | 0.390762 | 3.4:-77114970 | MS.gene69749:CDS |
| CAATTCTCCAGAAGAATCAT+TGG | 0.404888 | 3.4:-77115260 | MS.gene69749:CDS |
| GCAGATACCATCATATTCAT+TGG | 0.407985 | 3.4:+77115855 | None:intergenic |
| ATAAGAATTAACCATGTCAT+TGG | 0.413273 | 3.4:+77115150 | None:intergenic |
| TTGAGGTTCATGATCAAGAT+AGG | 0.416846 | 3.4:+77113980 | None:intergenic |
| GCACAAAATATACTACACTA+TGG | 0.422402 | 3.4:-77113427 | MS.gene69749:CDS |
| ATTTGAGTCATATGAGCAAT+TGG | 0.424879 | 3.4:+77114750 | None:intergenic |
| CCATCATATTCATTGGTAAC+CGG | 0.447908 | 3.4:+77115862 | None:intergenic |
| TCCCTATCGGGATCCTCTGC+AGG | 0.448688 | 3.4:+77115587 | None:intergenic |
| ATTGGAATAAAACTTCTAGA+TGG | 0.460556 | 3.4:-77114215 | MS.gene69749:CDS |
| TTCTTACCAGACCTCCCTAT+CGG | 0.460743 | 3.4:+77115574 | None:intergenic |
| CAACCGTGTGGTATTGTTCA+AGG | 0.466765 | 3.4:-77113260 | MS.gene69749:CDS |
| ATCAAATTCTTTGTTGCGGT+TGG | 0.468295 | 3.4:+77113957 | None:intergenic |
| AGGCTTATTGGGATTGGTCA+TGG | 0.470187 | 3.4:-77115029 | MS.gene69749:CDS |
| GCATTATGTCGGTCATTCTC+AGG | 0.472282 | 3.4:-77114938 | MS.gene69749:intron |
| TTGTATAGGCTTATTGGGAT+TGG | 0.474063 | 3.4:-77115035 | MS.gene69749:intron |
| TGGTTATGATCTACCTGCTT+CGG | 0.479985 | 3.4:-77114995 | MS.gene69749:CDS |
| AATTCTCCAGAAGAATCATT+GGG | 0.482219 | 3.4:-77115259 | MS.gene69749:CDS |
| TAAGAATTAACCATGTCATT+GGG | 0.483284 | 3.4:+77115151 | None:intergenic |
| TAACAGGATATATATTGGTT+AGG | 0.485514 | 3.4:-77114387 | MS.gene69749:intron |
| CTGTGAATAATGGTAATAAA+CGG | 0.486883 | 3.4:+77114159 | None:intergenic |
| ATTTGAGCAGTGATCAGATC+AGG | 0.490676 | 3.4:-77113481 | MS.gene69749:intron |
| TTATACGTGCGAAGAACATA+AGG | 0.497284 | 3.4:-77115809 | MS.gene69749:intron |
| TCTTACCAGACCTCCCTATC+GGG | 0.501642 | 3.4:+77115575 | None:intergenic |
| ACGCATGTGGAACGAATTCA+CGG | 0.501834 | 3.4:+77114361 | None:intergenic |
| TACACATATTGTGCCGAAGC+AGG | 0.503518 | 3.4:+77114982 | None:intergenic |
| GGCTTATTGGGATTGGTCAT+GGG | 0.506432 | 3.4:-77115028 | MS.gene69749:CDS |
| TAAACGGTTTGTGCAGTTGA+GGG | 0.507348 | 3.4:+77114175 | None:intergenic |
| TAGCATCATGGTCATTATTG+AGG | 0.509250 | 3.4:+77113284 | None:intergenic |
| AGACCATGTTGGATTAATAC+AGG | 0.511410 | 3.4:+77115538 | None:intergenic |
| TATTTATTCTCTTACGCATG+TGG | 0.511783 | 3.4:+77114348 | None:intergenic |
| AGGATCCCGATAGGGAGGTC+TGG | 0.512633 | 3.4:-77115580 | MS.gene69749:CDS |
| ACCTAGGTTACAACAGATGA+TGG | 0.517461 | 3.4:-77115622 | MS.gene69749:intron |
| CCGGTTACCAATGAATATGA+TGG | 0.532885 | 3.4:-77115862 | MS.gene69749:CDS |
| TTTGATGTGTGGCTTATCAA+TGG | 0.534449 | 3.4:-77115214 | MS.gene69749:CDS |
| TTGCTGCATAAATTCTTCAA+AGG | 0.534860 | 3.4:-77114009 | MS.gene69749:CDS |
| TGGTCATGGGATGAATTAGC+TGG | 0.535170 | 3.4:-77115015 | MS.gene69749:CDS |
| CGTTTATTACCATTATTCAC+AGG | 0.536396 | 3.4:-77114158 | MS.gene69749:intron |
| GGGACTTAGTGATGTGTGGT+TGG | 0.541934 | 3.4:+77115171 | None:intergenic |
| ATGGATCAAATTCTTTGTTG+CGG | 0.548247 | 3.4:+77113953 | None:intergenic |
| ATAAACGGTTTGTGCAGTTG+AGG | 0.551432 | 3.4:+77114174 | None:intergenic |
| TGGTTATGTCATAAGTTGGA+GGG | 0.552987 | 3.4:+77113395 | None:intergenic |
| GCTTCTGAATGTATTAAGAT+CGG | 0.561603 | 3.4:-77114787 | MS.gene69749:CDS |
| TATTTCAGGATGCTGCCGTA+TGG | 0.566764 | 3.4:-77115288 | MS.gene69749:intron |
| GCCTGCAGAGGATCCCGATA+GGG | 0.576693 | 3.4:-77115588 | MS.gene69749:CDS |
| AAAACACTTCACATAAGCAA+TGG | 0.577303 | 3.4:-77115901 | MS.gene69749:CDS |
| TTGGTTATGTCATAAGTTGG+AGG | 0.578478 | 3.4:+77113394 | None:intergenic |
| ATCTGATGTACAAGATGTGA+AGG | 0.579082 | 3.4:-77113320 | MS.gene69749:CDS |
| CAGATATTGGATTTGATGTG+TGG | 0.580726 | 3.4:-77115225 | MS.gene69749:CDS |
| AGCCTGCAGAGGATCCCGAT+AGG | 0.597303 | 3.4:-77115589 | MS.gene69749:CDS |
| CCACACGGTTGCTAGCATCA+TGG | 0.601075 | 3.4:+77113272 | None:intergenic |
| CCTCCTGTATTAATCCAACA+TGG | 0.610624 | 3.4:-77115541 | MS.gene69749:CDS |
| ATATACTACACTATGGACAA+AGG | 0.617365 | 3.4:-77113420 | MS.gene69749:CDS |
| CATTGGGACTTAGTGATGTG+TGG | 0.618477 | 3.4:+77115167 | None:intergenic |
| TGCAGAGGATCCCGATAGGG+AGG | 0.623515 | 3.4:-77115585 | MS.gene69749:CDS |
| GTGTGGCTTATCAATGGTCG+AGG | 0.630199 | 3.4:-77115208 | MS.gene69749:CDS |
| ATCACTAAGTCCCAATGACA+TGG | 0.633044 | 3.4:-77115161 | MS.gene69749:intron |
| TGGAGAATTGAACAACCATA+CGG | 0.639873 | 3.4:+77115273 | None:intergenic |
| AGGGAGGTCTGGTAAGAAAG+CGG | 0.661319 | 3.4:-77115569 | MS.gene69749:CDS |
| TTACACAAAAGAGACCATGT+TGG | 0.663756 | 3.4:+77115527 | None:intergenic |
| GTTACATCTTGAGCCTGCAG+AGG | 0.665718 | 3.4:-77115600 | MS.gene69749:CDS |
| CCATGTTGGATTAATACAGG+AGG | 0.666266 | 3.4:+77115541 | None:intergenic |
| CATCCTTGAACAATACCACA+CGG | 0.673124 | 3.4:+77113257 | None:intergenic |
| AAGACTATTGTAGAGACACA+AGG | 0.682047 | 3.4:-77115832 | MS.gene69749:CDS |
| CCATGATGCTAGCAACCGTG+TGG | 0.780724 | 3.4:-77113272 | MS.gene69749:CDS |
| CATGTGGAACGAATTCACGG+AGG | 0.834375 | 3.4:+77114364 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATATAAAAATGACA+TGG | + | chr3.4:77115495-77115514 | None:intergenic | 10.0% |
| !! | AAATAGTAAGTAAAAAAATA+GGG | + | chr3.4:77114826-77114845 | None:intergenic | 10.0% |
| !!! | TATTTTACAAAGAAAAAAAA+TGG | - | chr3.4:77114570-77114589 | MS.gene69749:intron | 10.0% |
| !! | AACTATGTATAATATTAAAG+AGG | - | chr3.4:77114501-77114520 | MS.gene69749:intron | 15.0% |
| !! | ATACTAATTACAACAATTAT+TGG | - | chr3.4:77115072-77115091 | MS.gene69749:intron | 15.0% |
| !! | CAAATAGTAAGTAAAAAAAT+AGG | + | chr3.4:77114827-77114846 | None:intergenic | 15.0% |
| !!! | ACTATTGATATAAATTTTTC+AGG | - | chr3.4:77114300-77114319 | MS.gene69749:intron | 15.0% |
| !!! | CTATTGATATAAATTTTTCA+GGG | - | chr3.4:77114301-77114320 | MS.gene69749:intron | 15.0% |
| !!! | TTTTCATAATTGTATTCAAT+TGG | + | chr3.4:77114720-77114739 | None:intergenic | 15.0% |
| !!! | TTTTTTATTCCATTTTGTAT+AGG | - | chr3.4:77114098-77114117 | MS.gene69749:intron | 15.0% |
| !! | AATTGAAGTGGTATTAATAA+TGG | + | chr3.4:77113466-77113485 | None:intergenic | 20.0% |
| !! | ACAAAGAAAAAAAATGGTAT+TGG | - | chr3.4:77114576-77114595 | MS.gene69749:intron | 20.0% |
| !! | ATCATACTTAACAATACTTT+AGG | + | chr3.4:77115448-77115467 | None:intergenic | 20.0% |
| !! | GATCAAATTATATTTAGTCA+TGG | + | chr3.4:77115268-77115287 | None:intergenic | 20.0% |
| !! | TAATGTAACAGGATATATAT+TGG | - | chr3.4:77114755-77114774 | MS.gene69749:CDS | 20.0% |
| !!! | ACCTATAAATTTTAAAGGTA+AGG | + | chr3.4:77115113-77115132 | None:intergenic | 20.0% |
| !!! | ATTTTTATGCATTTATGAAC+AGG | - | chr3.4:77115608-77115627 | MS.gene69749:CDS | 20.0% |
| !!! | TAAAATTAATTTTCTCTACG+TGG | - | chr3.4:77115535-77115554 | MS.gene69749:CDS | 20.0% |
| !!! | TCCTTACCTTTAAAATTTAT+AGG | - | chr3.4:77115109-77115128 | MS.gene69749:intron | 20.0% |
| !!! | TGTTATTTAAACAACCAATT+CGG | - | chr3.4:77114526-77114545 | MS.gene69749:intron | 20.0% |
| !!! | TTTGGACCTATAAATTTTAA+AGG | + | chr3.4:77115118-77115137 | None:intergenic | 20.0% |
| ! | ATAAGAATTAACCATGTCAT+TGG | + | chr3.4:77114000-77114019 | None:intergenic | 25.0% |
| ! | ATATGTGATATCAATTGAAG+TGG | + | chr3.4:77113478-77113497 | None:intergenic | 25.0% |
| ! | ATCCTGTTACATTAGAAAAA+AGG | + | chr3.4:77114749-77114768 | None:intergenic | 25.0% |
| ! | ATGTTTGAGTGCAAAAAAAA+GGG | - | chr3.4:77114852-77114871 | MS.gene69749:intron | 25.0% |
| ! | ATTGGAATAAAACTTCTAGA+TGG | - | chr3.4:77114932-77114951 | MS.gene69749:intron | 25.0% |
| ! | CTGTGAATAATGGTAATAAA+CGG | + | chr3.4:77114991-77115010 | None:intergenic | 25.0% |
| ! | GGTACTTTAGATGTTAATAA+TGG | - | chr3.4:77115010-77115029 | MS.gene69749:CDS | 25.0% |
| ! | TAAGAATTAACCATGTCATT+GGG | + | chr3.4:77113999-77114018 | None:intergenic | 25.0% |
| ! | TATGTTAATTCTAATGAGCA+GGG | - | chr3.4:77114907-77114926 | MS.gene69749:intron | 25.0% |
| ! | TATGTTTGAGTGCAAAAAAA+AGG | - | chr3.4:77114851-77114870 | MS.gene69749:intron | 25.0% |
| ! | TCAATATCGTATATGTAAAG+TGG | - | chr3.4:77113667-77113686 | MS.gene69749:intron | 25.0% |
| ! | TCCTGTTACATTAGAAAAAA+GGG | + | chr3.4:77114748-77114767 | None:intergenic | 25.0% |
| ! | TTACAATTTCAAATAGTACG+TGG | + | chr3.4:77113390-77113409 | None:intergenic | 25.0% |
| ! | TTATGTTAATTCTAATGAGC+AGG | - | chr3.4:77114906-77114925 | MS.gene69749:intron | 25.0% |
| !! | TAACAGGATATATATTGGTT+AGG | - | chr3.4:77114760-77114779 | MS.gene69749:CDS | 25.0% |
| !!! | ATTTATTTTTGTGTTGACCT+AGG | - | chr3.4:77113509-77113528 | MS.gene69749:intron | 25.0% |
| !!! | ATTTTGGTTATGTCATAAGT+TGG | + | chr3.4:77115759-77115778 | None:intergenic | 25.0% |
| !!! | GGATTTATTTTAGCAGATAT+TGG | - | chr3.4:77113909-77113928 | MS.gene69749:intron | 25.0% |
| !!! | TGCACATATTGATTTTATAG+CGG | - | chr3.4:77115917-77115936 | MS.gene69749:CDS | 25.0% |
| AAAACACTTCACATAAGCAA+TGG | - | chr3.4:77113246-77113265 | MS.gene69749:CDS | 30.0% | |
| AATTCTCCAGAAGAATCATT+GGG | - | chr3.4:77113888-77113907 | MS.gene69749:intron | 30.0% | |
| ACACTCACAAAAGAGAAAAT+AGG | + | chr3.4:77113771-77113790 | None:intergenic | 30.0% | |
| ACTTTATCTCTCTATTGCTA+TGG | + | chr3.4:77114610-77114629 | None:intergenic | 30.0% | |
| AGCATCCTGAAATAAATCAT+AGG | + | chr3.4:77113853-77113872 | None:intergenic | 30.0% | |
| AGTTGTTACATACACAAACA+TGG | + | chr3.4:77114283-77114302 | None:intergenic | 30.0% | |
| ATAAATCCCAATGATTCTTC+TGG | + | chr3.4:77113897-77113916 | None:intergenic | 30.0% | |
| ATATACTACACTATGGACAA+AGG | - | chr3.4:77115727-77115746 | MS.gene69749:intron | 30.0% | |
| ATGGATCAAATTCTTTGTTG+CGG | + | chr3.4:77115197-77115216 | None:intergenic | 30.0% | |
| ATTTGAGTCATATGAGCAAT+TGG | + | chr3.4:77114400-77114419 | None:intergenic | 30.0% | |
| CAATATGTGTACAACTATAC+TGG | - | chr3.4:77114177-77114196 | MS.gene69749:CDS | 30.0% | |
| CGTTTATTACCATTATTCAC+AGG | - | chr3.4:77114989-77115008 | MS.gene69749:CDS | 30.0% | |
| GAAGAATTTATGCAGCAATT+TGG | + | chr3.4:77115136-77115155 | None:intergenic | 30.0% | |
| GCACAAAATATACTACACTA+TGG | - | chr3.4:77115720-77115739 | MS.gene69749:intron | 30.0% | |
| GCATTGAAAAAAGCTATCAT+GGG | + | chr3.4:77115972-77115991 | None:intergenic | 30.0% | |
| GCTTCTGAATGTATTAAGAT+CGG | - | chr3.4:77114360-77114379 | MS.gene69749:intron | 30.0% | |
| GGTCAAAAAATGCATTATGT+CGG | - | chr3.4:77114198-77114217 | MS.gene69749:CDS | 30.0% | |
| TATTTAAACAACCAATTCGG+TGG | - | chr3.4:77114529-77114548 | MS.gene69749:intron | 30.0% | |
| TATTTATTCTCTTACGCATG+TGG | + | chr3.4:77114802-77114821 | None:intergenic | 30.0% | |
| TGACTCCTATGATTTATTTC+AGG | - | chr3.4:77113845-77113864 | MS.gene69749:intron | 30.0% | |
| TTGCTGCATAAATTCTTCAA+AGG | - | chr3.4:77115138-77115157 | MS.gene69749:intron | 30.0% | |
| ! | AGCAGCAATTTTTGTTAACT+CGG | + | chr3.4:77114428-77114447 | None:intergenic | 30.0% |
| ! | AGCATTGAAAAAAGCTATCA+TGG | + | chr3.4:77115973-77115992 | None:intergenic | 30.0% |
| ! | CAGACTTACTTTGAGAAAAA+TGG | + | chr3.4:77115216-77115235 | None:intergenic | 30.0% |
| ! | CCATTTTGTATAGGCTTATT+GGG | - | chr3.4:77114107-77114126 | MS.gene69749:intron | 30.0% |
| ! | CTTACACGGTAATAAGATTT+TGG | + | chr3.4:77113795-77113814 | None:intergenic | 30.0% |
| ! | TCCATTTTGTATAGGCTTAT+TGG | - | chr3.4:77114106-77114125 | MS.gene69749:intron | 30.0% |
| ! | TCTAAAGTACCTGTGAATAA+TGG | + | chr3.4:77115001-77115020 | None:intergenic | 30.0% |
| ! | TTTGAGTGATCACAAGATTT+TGG | - | chr3.4:77113697-77113716 | MS.gene69749:intron | 30.0% |
| !! | GAAAAAAAATGGTATTGGCA+CGG | - | chr3.4:77114581-77114600 | MS.gene69749:intron | 30.0% |
| !!! | GCACATATTGATTTTATAGC+GGG | - | chr3.4:77115918-77115937 | MS.gene69749:CDS | 30.0% |
| !!! | TCCCTTTTTTCTAATGTAAC+AGG | - | chr3.4:77114744-77114763 | MS.gene69749:CDS | 30.0% |
| AAGACTATTGTAGAGACACA+AGG | - | chr3.4:77113315-77113334 | MS.gene69749:CDS | 35.0% | |
| ACAGTTCAAATCTCAAAAGC+AGG | - | chr3.4:77115345-77115364 | MS.gene69749:intron | 35.0% | |
| AGACCATGTTGGATTAATAC+AGG | + | chr3.4:77113612-77113631 | None:intergenic | 35.0% | |
| ATCAAATTCTTTGTTGCGGT+TGG | + | chr3.4:77115193-77115212 | None:intergenic | 35.0% | |
| ATCTGATGTACAAGATGTGA+AGG | - | chr3.4:77115827-77115846 | MS.gene69749:CDS | 35.0% | |
| ATTCTAATGAGCAGGGATAT+TGG | - | chr3.4:77114914-77114933 | MS.gene69749:intron | 35.0% | |
| CAATTCTCCAGAAGAATCAT+TGG | - | chr3.4:77113887-77113906 | MS.gene69749:intron | 35.0% | |
| CAGATATTGGATTTGATGTG+TGG | - | chr3.4:77113922-77113941 | MS.gene69749:intron | 35.0% | |
| CCCAATAAGCCTATACAAAA+TGG | + | chr3.4:77114110-77114129 | None:intergenic | 35.0% | |
| GCAGATACCATCATATTCAT+TGG | + | chr3.4:77113295-77113314 | None:intergenic | 35.0% | |
| TAGCATCATGGTCATTATTG+AGG | + | chr3.4:77115866-77115885 | None:intergenic | 35.0% | |
| TGCTCAAATTTCATAGAGTC+AGG | + | chr3.4:77115655-77115674 | None:intergenic | 35.0% | |
| TGGAGAATTGAACAACCATA+CGG | + | chr3.4:77113877-77113896 | None:intergenic | 35.0% | |
| TTACACAAAAGAGACCATGT+TGG | + | chr3.4:77113623-77113642 | None:intergenic | 35.0% | |
| TTATACGTGCGAAGAACATA+AGG | - | chr3.4:77113338-77113357 | MS.gene69749:CDS | 35.0% | |
| TTCTCAAAGTAAGTCTGTCA+AGG | - | chr3.4:77115219-77115238 | MS.gene69749:CDS | 35.0% | |
| TTGAGGTTCATGATCAAGAT+AGG | + | chr3.4:77115170-77115189 | None:intergenic | 35.0% | |
| TTGTATAGGCTTATTGGGAT+TGG | - | chr3.4:77114112-77114131 | MS.gene69749:intron | 35.0% | |
| TTTGATGTGTGGCTTATCAA+TGG | - | chr3.4:77113933-77113952 | MS.gene69749:intron | 35.0% | |
| ! | CCATCATATTCATTGGTAAC+CGG | + | chr3.4:77113288-77113307 | None:intergenic | 35.0% |
| ! | GCAATTTTTGTTAACTCGGA+AGG | + | chr3.4:77114424-77114443 | None:intergenic | 35.0% |
| ! | TGGTTATGTCATAAGTTGGA+GGG | + | chr3.4:77115755-77115774 | None:intergenic | 35.0% |
| ! | TGGTTTTTCACAATCATCTC+CGG | - | chr3.4:77113266-77113285 | MS.gene69749:CDS | 35.0% |
| ! | TTGGTTATGTCATAAGTTGG+AGG | + | chr3.4:77115756-77115775 | None:intergenic | 35.0% |
| !! | AAGATTTTGGTCACAAGGTT+TGG | - | chr3.4:77113710-77113729 | MS.gene69749:intron | 35.0% |
| !! | ATCACAAGATTTTGGTCACA+AGG | - | chr3.4:77113705-77113724 | MS.gene69749:intron | 35.0% |
| !! | GTGAAGTGTTTTTCTTCCTT+GGG | + | chr3.4:77113238-77113257 | None:intergenic | 35.0% |
| !! | TGTGAAGTGTTTTTCTTCCT+TGG | + | chr3.4:77113239-77113258 | None:intergenic | 35.0% |
| !!! | CTCTTTTTAGCTAATGTGAG+TGG | - | chr3.4:77114451-77114470 | MS.gene69749:intron | 35.0% |
| ACCATCATCTGTTGTAACCT+AGG | + | chr3.4:77113529-77113548 | None:intergenic | 40.0% | |
| ACCTAGGTTACAACAGATGA+TGG | - | chr3.4:77113525-77113544 | MS.gene69749:intron | 40.0% | |
| AGAAAAAGGGGGAATTCACT+AGG | + | chr3.4:77115783-77115802 | None:intergenic | 40.0% | |
| ATAAACGGTTTGTGCAGTTG+AGG | + | chr3.4:77114976-77114995 | None:intergenic | 40.0% | |
| ATCACTAAGTCCCAATGACA+TGG | - | chr3.4:77113986-77114005 | MS.gene69749:CDS | 40.0% | |
| ATTTGAGCAGTGATCAGATC+AGG | - | chr3.4:77115666-77115685 | MS.gene69749:intron | 40.0% | |
| CAAATAAGTTGCCACCGAAT+TGG | + | chr3.4:77114543-77114562 | None:intergenic | 40.0% | |
| CATCCTTGAACAATACCACA+CGG | + | chr3.4:77115893-77115912 | None:intergenic | 40.0% | |
| CCATGTTGGATTAATACAGG+AGG | + | chr3.4:77113609-77113628 | None:intergenic | 40.0% | |
| CCGGTTACCAATGAATATGA+TGG | - | chr3.4:77113285-77113304 | MS.gene69749:CDS | 40.0% | |
| CCTCCTGTATTAATCCAACA+TGG | - | chr3.4:77113606-77113625 | MS.gene69749:intron | 40.0% | |
| GAAAAAGGGGGAATTCACTA+GGG | + | chr3.4:77115782-77115801 | None:intergenic | 40.0% | |
| TAAACGGTTTGTGCAGTTGA+GGG | + | chr3.4:77114975-77114994 | None:intergenic | 40.0% | |
| TCAAAGTAAGTCTGTCAAGG+AGG | - | chr3.4:77115222-77115241 | MS.gene69749:CDS | 40.0% | |
| TGGTTATGATCTACCTGCTT+CGG | - | chr3.4:77114152-77114171 | MS.gene69749:intron | 40.0% | |
| TTGCACGAGAAACTCTTACA+CGG | + | chr3.4:77113809-77113828 | None:intergenic | 40.0% | |
| !!! | GCTTTTGCTGCTTTATCTCA+AGG | - | chr3.4:77114334-77114353 | MS.gene69749:intron | 40.0% |
| ACGCATGTGGAACGAATTCA+CGG | + | chr3.4:77114789-77114808 | None:intergenic | 45.0% | |
| CAACCGTGTGGTATTGTTCA+AGG | - | chr3.4:77115887-77115906 | MS.gene69749:CDS | 45.0% | |
| CATTGGGACTTAGTGATGTG+TGG | + | chr3.4:77113983-77114002 | None:intergenic | 45.0% | |
| CCCTCCATAGCTGAGAAAAA+GGG | + | chr3.4:77115796-77115815 | None:intergenic | 45.0% | |
| CCTCCATAGCTGAGAAAAAG+GGG | + | chr3.4:77115795-77115814 | None:intergenic | 45.0% | |
| CTCCATAGCTGAGAAAAAGG+GGG | + | chr3.4:77115794-77115813 | None:intergenic | 45.0% | |
| GCATTATGTCGGTCATTCTC+AGG | - | chr3.4:77114209-77114228 | MS.gene69749:CDS | 45.0% | |
| TACACATATTGTGCCGAAGC+AGG | + | chr3.4:77114168-77114187 | None:intergenic | 45.0% | |
| TATTTCAGGATGCTGCCGTA+TGG | - | chr3.4:77113859-77113878 | MS.gene69749:intron | 45.0% | |
| TGGTCATGGGATGAATTAGC+TGG | - | chr3.4:77114132-77114151 | MS.gene69749:intron | 45.0% | |
| TTCTTACCAGACCTCCCTAT+CGG | + | chr3.4:77113576-77113595 | None:intergenic | 45.0% | |
| ! | AGTGTTTTTCTTCCTTGGGC+TGG | + | chr3.4:77113234-77113253 | None:intergenic | 45.0% |
| ! | CCCTTTTTCTCAGCTATGGA+GGG | - | chr3.4:77115793-77115812 | MS.gene69749:intron | 45.0% |
| ! | GGGGAATTCACTAGGGATTT+TGG | + | chr3.4:77115775-77115794 | None:intergenic | 45.0% |
| ! | TTCCCCCTTTTTCTCAGCTA+TGG | - | chr3.4:77115789-77115808 | MS.gene69749:intron | 45.0% |
| ! | TTCTTTGTTGCGGTTGGTTG+AGG | + | chr3.4:77115187-77115206 | None:intergenic | 45.0% |
| !! | AGGCTTATTGGGATTGGTCA+TGG | - | chr3.4:77114118-77114137 | MS.gene69749:intron | 45.0% |
| !! | GGCTTATTGGGATTGGTCAT+GGG | - | chr3.4:77114119-77114138 | MS.gene69749:intron | 45.0% |
| AGGGAGGTCTGGTAAGAAAG+CGG | - | chr3.4:77113578-77113597 | MS.gene69749:intron | 50.0% | |
| ATAGTACGTGGAACGCAGCA+TGG | + | chr3.4:77113378-77113397 | None:intergenic | 50.0% | |
| CATGTGGAACGAATTCACGG+AGG | + | chr3.4:77114786-77114805 | None:intergenic | 50.0% | |
| GCCCTCCATAGCTGAGAAAA+AGG | + | chr3.4:77115797-77115816 | None:intergenic | 50.0% | |
| GGGACTTAGTGATGTGTGGT+TGG | + | chr3.4:77113979-77113998 | None:intergenic | 50.0% | |
| GTGTGGCTTATCAATGGTCG+AGG | - | chr3.4:77113939-77113958 | MS.gene69749:intron | 50.0% | |
| GTTACATCTTGAGCCTGCAG+AGG | - | chr3.4:77113547-77113566 | MS.gene69749:intron | 50.0% | |
| TCTTACCAGACCTCCCTATC+GGG | + | chr3.4:77113575-77113594 | None:intergenic | 50.0% | |
| ! | CCCCTTTTTCTCAGCTATGG+AGG | - | chr3.4:77115792-77115811 | MS.gene69749:intron | 50.0% |
| ! | TTTTGCATTGCACCAGCCCA+AGG | - | chr3.4:77113219-77113238 | MS.gene69749:CDS | 50.0% |
| CCACACGGTTGCTAGCATCA+TGG | + | chr3.4:77115878-77115897 | None:intergenic | 55.0% | |
| CCATGATGCTAGCAACCGTG+TGG | - | chr3.4:77115875-77115894 | MS.gene69749:CDS | 55.0% | |
| AGCCTGCAGAGGATCCCGAT+AGG | - | chr3.4:77113558-77113577 | MS.gene69749:intron | 60.0% | |
| AGGATCCCGATAGGGAGGTC+TGG | - | chr3.4:77113567-77113586 | MS.gene69749:intron | 60.0% | |
| GCCTGCAGAGGATCCCGATA+GGG | - | chr3.4:77113559-77113578 | MS.gene69749:intron | 60.0% | |
| TCCCTATCGGGATCCTCTGC+AGG | + | chr3.4:77113563-77113582 | None:intergenic | 60.0% | |
| TGCAGAGGATCCCGATAGGG+AGG | - | chr3.4:77113562-77113581 | MS.gene69749:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 77113171 | 77115998 | 77113171 | ID=MS.gene69749 |
| chr3.4 | mRNA | 77113171 | 77115998 | 77113171 | ID=MS.gene69749.t1;Parent=MS.gene69749 |
| chr3.4 | exon | 77115810 | 77115998 | 77115810 | ID=MS.gene69749.t1.exon1;Parent=MS.gene69749.t1 |
| chr3.4 | CDS | 77115810 | 77115998 | 77115810 | ID=cds.MS.gene69749.t1;Parent=MS.gene69749.t1 |
| chr3.4 | exon | 77115531 | 77115638 | 77115531 | ID=MS.gene69749.t1.exon2;Parent=MS.gene69749.t1 |
| chr3.4 | CDS | 77115531 | 77115638 | 77115531 | ID=cds.MS.gene69749.t1;Parent=MS.gene69749.t1 |
| chr3.4 | exon | 77115162 | 77115302 | 77115162 | ID=MS.gene69749.t1.exon3;Parent=MS.gene69749.t1 |
| chr3.4 | CDS | 77115162 | 77115302 | 77115162 | ID=cds.MS.gene69749.t1;Parent=MS.gene69749.t1 |
| chr3.4 | exon | 77114939 | 77115049 | 77114939 | ID=MS.gene69749.t1.exon4;Parent=MS.gene69749.t1 |
| chr3.4 | CDS | 77114939 | 77115049 | 77114939 | ID=cds.MS.gene69749.t1;Parent=MS.gene69749.t1 |
| chr3.4 | exon | 77114704 | 77114847 | 77114704 | ID=MS.gene69749.t1.exon5;Parent=MS.gene69749.t1 |
| chr3.4 | CDS | 77114704 | 77114847 | 77114704 | ID=cds.MS.gene69749.t1;Parent=MS.gene69749.t1 |
| chr3.4 | exon | 77114363 | 77114403 | 77114363 | ID=MS.gene69749.t1.exon6;Parent=MS.gene69749.t1 |
| chr3.4 | CDS | 77114363 | 77114403 | 77114363 | ID=cds.MS.gene69749.t1;Parent=MS.gene69749.t1 |
| chr3.4 | exon | 77114159 | 77114241 | 77114159 | ID=MS.gene69749.t1.exon7;Parent=MS.gene69749.t1 |
| chr3.4 | CDS | 77114159 | 77114241 | 77114159 | ID=cds.MS.gene69749.t1;Parent=MS.gene69749.t1 |
| chr3.4 | exon | 77113943 | 77114038 | 77113943 | ID=MS.gene69749.t1.exon8;Parent=MS.gene69749.t1 |
| chr3.4 | CDS | 77113943 | 77114038 | 77113943 | ID=cds.MS.gene69749.t1;Parent=MS.gene69749.t1 |
| chr3.4 | exon | 77113171 | 77113493 | 77113171 | ID=MS.gene69749.t1.exon9;Parent=MS.gene69749.t1 |
| chr3.4 | CDS | 77113171 | 77113493 | 77113171 | ID=cds.MS.gene69749.t1;Parent=MS.gene69749.t1 |
| Gene Sequence |
| Protein sequence |
