AlfalfaGEDB | MS.gene91155

M. sativa cultivar XinJiangDaYe / MS.gene91155

KEGG: -
GO: -
PFAM: PF01722.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91155.t1	XP_013466929.1	83.5	170	21	2	1	170	1	163	7.70E-66	260

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91155.t1	Q9LF68	75.3	93	23	0	73	165	84	176	5.6e-33	142.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91155.t1	I3SAF3	83.5	170	21	2	1	170	1	163	5.6e-66	260.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene91155	0.862621	4.45E-64	-1.69E-46
MS.gene049173	MS.gene91155	0.816665	4.92E-52	-1.69E-46
MS.gene049217	MS.gene91155	0.858548	7.64E-63	-1.69E-46
MS.gene049222	MS.gene91155	0.854	1.65E-61	-1.69E-46
MS.gene049232	MS.gene91155	0.827221	1.76E-54	-1.69E-46
MS.gene049285	MS.gene91155	0.884068	2.63E-71	-1.69E-46
MS.gene049320	MS.gene91155	0.869835	2.30E-66	-1.69E-46
MS.gene049609	MS.gene91155	0.800665	1.30E-48	-1.69E-46
MS.gene049627	MS.gene91155	0.847826	9.04E-60	-1.69E-46
MS.gene049633	MS.gene91155	0.812881	3.39E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91155.t1	MTR_1g040145	82.759	174	15	3	1	170	1	163	1.92e-98	281

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91155.t1	AT5G17560	75.269	93	23	73	165	84	176	1.62e-48	155
MS.gene91155.t1	AT5G17560	61.224	49	19	73	121	84	132	1.08e-15	70.1
MS.gene91155.t1	AT5G17560	63.830	47	17	73	119	84	130	1.23e-15	69.7

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Find 36 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAGCTTTGCGGAGTAAAG+TGG	0.561290	1.3:-22799775	None:intergenic
AATAATTTCTCATCATGTTT+AGG	0.269314	1.3:-22799906	None:intergenic
AATCAGCCGTGAATAGGCAA+AGG	0.635801	1.3:+22804324	MS.gene91155:CDS
ACCGTAAGGTCGAACCAAAA+CGG	0.443202	1.3:-22799799	None:intergenic
ACTCCTGCTGAAGCAGCCGC+CGG	0.495922	1.3:+22804416	MS.gene91155:CDS
ACTCTGAAGCTCCTCCCATA+TGG	0.480068	1.3:-22804360	None:intergenic
AGCCGTGAATAGGCAAAGGA+TGG	0.626414	1.3:+22804328	MS.gene91155:CDS
AGCTTTGCGGAGTAAAGTGG+TGG	0.589293	1.3:-22799772	None:intergenic
AGGGACAATCAGCCGTGAAT+AGG	0.422097	1.3:+22804318	MS.gene91155:CDS
ATGATTACGAAAGAGAACCG+TGG	0.718260	1.3:-22799832	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCAACTAGATAATAAGCT+CGG	+	chr1.3:22803965-22803984	MS.gene91155:intron	30.0%
AATGTGATCTCACCTATTTA+AGG	+	chr1.3:22800295-22800314	MS.gene91155:intron	30.0%
ACAATTCATCGAACATGTAA+GGG	-	chr1.3:22800064-22800083	None:intergenic	30.0%
ACCGAAACCAAAAAAATTCA+AGG	+	chr1.3:22800365-22800384	MS.gene91155:intron	30.0%
AGAAAGATGAGATATTGTCT+AGG	-	chr1.3:22803469-22803488	None:intergenic	30.0%
AGTGTTCCAACAGAATTATA+AGG	+	chr1.3:22800588-22800607	MS.gene91155:intron	30.0%
CAACACTAGTGTTTATATAG+TGG	-	chr1.3:22800507-22800526	None:intergenic	30.0%
CCAAAAAAATTCAAGGTTTC+GGG	+	chr1.3:22800372-22800391	MS.gene91155:intron	30.0%
CTAATAATAGGGGTAAAAGA+GGG	+	chr1.3:22803512-22803531	MS.gene91155:intron	30.0%
CTTCTAACACTACTTCTTTA+GGG	-	chr1.3:22801220-22801239	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	22799741	22804445	22799741	ID=MS.gene91155
chr1.3	mRNA	22799741	22804445	22799741	ID=MS.gene91155.t1;Parent=MS.gene91155
chr1.3	exon	22799741	22800031	22799741	ID=MS.gene91155.t1.exon1;Parent=MS.gene91155.t1
chr1.3	CDS	22799741	22800031	22799741	ID=cds.MS.gene91155.t1;Parent=MS.gene91155.t1
chr1.3	exon	22801837	22801904	22801837	ID=MS.gene91155.t1.exon2;Parent=MS.gene91155.t1
chr1.3	CDS	22801837	22801904	22801837	ID=cds.MS.gene91155.t1;Parent=MS.gene91155.t1
chr1.3	exon	22804292	22804445	22804292	ID=MS.gene91155.t1.exon3;Parent=MS.gene91155.t1
chr1.3	CDS	22804292	22804445	22804292	ID=cds.MS.gene91155.t1;Parent=MS.gene91155.t1

Gene Sequence

>MS.gene91155

ATGCGGGCACACGTTTTCTCACTTTCAGCACCCACCACTTTACTCCGCAAAGCTCTTCCCGTTTTGGTTCGACCTTACGGTAACAACAAATCCACGGTTCTCTTTCGTAATCATATCTCGTTCCTCAGATCCACTTCACAAACTACTTCTCTCTTTCGTGATATTCCTAAACATGATGAGAAATTATTGTTCGCCACTGTTAATTCTATTCGCAAGTTTACTTCACGTGCTACTAATGTAAACGATGCTGGTTCTATTGATTTGCCTCTCATTCAATCTATGCAGCAAAAGGTATTGTTAGTTTCATTTCATTTCATTGCCCCTTACATGTTCGATGAATTGTCTCTTAATTTGTTTCTGATATTGTAAGACATAGTCTCCTTTATTAACAATATGAATAGTGAAATTGTTAGTCTGTAAGGGTTGGGACTGGGATATTATTGATGCAAATTCGGTTAGGTAGAGGTCAGCCAGGGGAGCTCTTCATATAAGCGATGAGCTAAAATTGGTTACAAAACTGATGGCTGAGATCATTTGACCATTAGAAAATCAACAATGTGATCTCACCTATTTAAGGAGCAACGCTGCCAAGAGTTGACTAATGGGGGGTGCACACGAGCGTGTACCGAAACCAAAAAAATTCAAGGTTTCGGGTCATTAAAATGTCATTGCCCAAGCTCGAACGATGCGCGTATGGTAGTCATGTTGATTGCATCATCTCCCTTTTGCAAAAGTGTGTACCACACCCTTGGGAGTCCTACCTCCACTATATAAACACTAGTGTTGTGTGTAAACTCTTCTATGTGAGACTTTTAGGAATTTTTTTAATTCACACACAAACACACCTAGTGTTCCAACAGAATTATAAGGAGGCACAATGGAATTAAACTGAAAGTGTAAATATGGATTCTAATCAATTTAGGGTCTGTTTGGAAGTTTATGTGGGGAGGGGAGGGCTTGAAAAAGAAAAGGATGAAGCGGAAGTAATAGAGGATTTCAGGAGCTAGGGTTTGGGGGTTTCATTTTTCTTCATAAAACAATATCTCCTAATTTGAAAGAACTCAAAAAAAGTATTTGAAGGGCTTAGATAAATTCTTCAAACCCAATCTATATTGTTATACAACAACAACAACCAAGCCTTATCCCACCAGCTACCTAAATCACACAACGCTAGAGATTCAACAAAGTTTTACGTTGACCGCCGAGGTCTAACACAACCCTCTCCTGTTAACCGGGCCTTGGGACCAGCTATGCATAGCAAAGCTAACATAGATATGATTAATCTATATTGTTATACTCCTCTTCAAATTTAAAATATCTTAATTATATAAACTTATTTATCATTCTCTACAAACTGAATCTTTTAAAAAAGATGGAAGATTTATCTCTTTTTCCCTCCAATTCCCTCCCTCCAAACTCCCAACCTGGAATTAAACTGCTCTTCTCCTTTTCTTATATCATTGCTTCTTTAGATTTCCCTAAAGAAGTAGTGTTAGAAGAGTATAAGAGCAGAAACAGAGGAAGAAATTTATTTTGCTAGAAATTTATTTAGGACTTCTATATCTTTATTTTTCTATCTAGGTACTTACAATCATCAAATTCTAAGATACTCCTATTTGATGATTGTATCTAGATAGAAAAGTAAAGATATAGGTAGGAGCAATGATTTAGGTAGAATCATCAAGTCCTAAATTTCATAAACTTAGATAGGAGTATCTAAATTTAGATATAGGGCTTGATAGTGAACTTTCAATTCCTAAATAAATTCAGAATTTCATAATTCTAAGATATAGGACTTGATGATTGTAAATTTCATAATTCTAAGATATGGGACTTGATAGTGAACTTTCAATTTCATAATTCTATATCAAACTCTAGAAATTTATTTAGGACTTCTATAAATTTCATAATTGATTGATGGCCTTTACTATCTTATGAATTTGCAACCAGATCTTCCTTCAATTTTGAGGAAAAATATTGTGATTTACTATTTGTTGTACCTACTCACAACAGCGTACAACTTAATTGTTATCTCTTTTTTGGGGTCTAATTTCATTCTTATTATTTCAATGTCAATTTGCGACTTGCTCTAAAAGATAAAGGAACAACTCAATGCAGAAACAGTCTCTGTAAAGGATGCTTATGGTGACGGACGCCATGTTAGGTAAGCATATTTTTAACTATTGAAGTGAATTTCGGTTTTTCGTTACCTTTGTGGTTAACATTGTATATACATGCACACAGAGGGATCTGTTGATTTTGATAGTTAAATGGTTGAATTGAAAGTTCACTATAAGTAGATAAATCTACAAAATTTCACATAATTCATAAACTGTTTGAGATTCCATGTATATTCCGAATTATGATAGTTACAACCTTAGTAAATTTGAAATATCTATTGTTAAATTACATTATATTTCCTATGAATATCTGAAGTTTTGTATGCATGATTGTCAAGATAATATAATATGATAATGATTCAATGGTTGGATTGATTAAACATACATTCTACAAAATGTTACTGTACTGGTTATTTTCAGGGCCACTTTCTATGGCTGACTGAAGGCGAAACTTTTATGTTTTTCTAATTTCTATAACACGGCAAAACACCAGTTGTGACATTCATAGTATAATTAACCTAGTTGTATACTTTTAGATTTGTACCTAGAGTTTGATGCTTTGATGAAAATATCCTATCACTTCAAGAATAAACTTTGTAAGAGAAAAGAGAGAAAGCAACCGTTGGTTGGAGGATGAAGTATCCTCTAAACAGAGAAACTTAATTACAGCAAAGTGATACGAGGCCTAGTATTGTTCAATAAACTAAAAAATCTATCTAATTTCTTCATAAAAAATATTAACTACCTTAAAACAGATAATGCACAGAGAACTAGAAAAATCCATAAATGCAATATTCATACAGAAAAGTCCTTGAAGAAGCAGGCGATATTCCCTCCTTACCCACAGTCAATATTAGTTTGGAGATATGCTCTCTTGTCAAACACCTAAATTCCCTGTTTGGGTGCCATGTGCATTTGAAGTAGGGTCACCATGGGTCAAGCTCAAACTCAAATACAACTATACGATAAATTGATAAATCAAAAATCAATTAATTTAATAGTCAAGCTGGAACAGTACTTCCCCAAAAACTAAGTGATATATTTTGATTGAAGAGCATGGTGCAAGCAGTCTTTATAGATGGCAGTTTTCACATTCAGCTGCTTGTTTTGTTGATGTTAGTTAGCACATGATGATTGATGGAAAATCTCCTCTGCAGACATAACATACCATTTCTAGCGTTGAAATGAACAGATATTGGCACCCCTTGTGGGAAGTAAAAGCAAAAGCACATTTTTTTTTGGAAAAAAGTACTTACTCTTGAATAATCGGTCAATGTAAAAATTGCCTTTGGAAATGTCGTGCATAAGTTAACCAAAACACCACTGTTTGACAAACATGAAAATCACAATAACATGCTTATGCAGAAAAATTAAGAGTGGATTCAAATCACACTATCTGGAAAAAGTATTTAGGACCAACATCATGTTGTTTGACAAACATGAAAATCACAATAACATGCTTATGCAGAAAAATTAAGAGTGGATTCAAATCACACTATCTGGAAAAAGTATTTAGGACCAACATCATGTTAATAGCTTTTCCTTCTTGCAAGTACATTTTGCCTGAATAAGGTTTTGATAGTTTTCTCTCATAATAGAGTGACACCTAGACAATATCTCATCTTTCTTCCCAAAACAAGTATGTATTGATCTAATAATAGGGGTAAAAGAGGGTTCTTATTGACCCTCAAAGCCGTACTAACAAATGATTTGATTTCAATAGCTAGGCTTGAATGTTGGTCTCGACTACCTGAAGTCACAAGTGTGATGTAATGTACATGGAATAGTGACATTGCGGCGTGATTGAACAAATGGCAACTATGTCAATCCATTTGCATCTTTATTAAGGAAATCCTTTTTGAAAGACCTTTGTTTTGCACTAAATTAAAGGCCGTTTCATAATCTCATCACAAGTCTCAGCCATTGAAACATCTGTAGATATATAACATTTAAAGCATAGTGGATGGGATGAAAGGCTGCTTCAGTTTTTTTTAATAATATTTTCGTGATAGAAAAGTGCCATTAAAATTGTTGGGAAAGTTTTGCTGCACAGTTGACAGTAAGACATGATGTTGTATGAGAGACTTAATGTTTGGAATTAAATAACCAACTAGATAATAAGCTCGGTGTATCCTCTCATGAAATAACAGTTAGCTTAATGTGTTTGGCGTATCTGCAGCCGCTTATTCCTCACCATTCAGCTACATATGCAATTCTTCTCCAAAGTTTGAGAGGAAATTGAGTAGCACAAAATAAAAATCCAAATCCAAACTGAAAATTGAATTTTCTTGAACACATTTGATATCCTCATTGATAAAAGTTATCCTTGACACCTTGAGGCACTGTTCCATGTTTTACATTGATAGTTGTGTTTGGCACACTAGACTTTATAGCTTGATTGATAGCTCTAATTTGTGGTTTTGTTTTGCAGCATTGATGTTGTATCGACAGCCTTCGAGGGACAATCAGCCGTGAATAGGCAAAGGATGGTCTATAAAGCCATATGGGAGGAGCTTCAGAGTGCAGTTCATGCAGTTGATCAGATGACGACCAAAACTCCTGCTGAAGCAGCCGCCGGGAAATGA

Protein sequence

>MS.gene91155.t1

MRAHVFSLSAPTTLLRKALPVLVRPYGNNKSTVLFRNHISFLRSTSQTTSLFRDIPKHDEKLLFATVNSIRKFTSRATNVNDAGSIDLPLIQSMQQKIKEQLNAETVSVKDAYGDGRHVSIDVVSTAFEGQSAVNRQRMVYKAIWEELQSAVHAVDQMTTKTPAEAAAGK