Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017663.01.T01 | XP_024633777.1 | 76.331 | 169 | 12 | 2 | 1 | 143 | 1 | 167 | 3.49E-79 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017663.01.T01 | Q9Y3E5 | 32.609 | 138 | 66 | 2 | 33 | 143 | 18 | 155 | 4.36E-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017663.01.T01 | A0A072V318 | 79.268 | 164 | 8 | 1 | 1 | 138 | 1 | 164 | 2.10e-76 | 236 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048065.01 | MsG0380017663.01 | 0.855638 | 5.516165e-62 | 1.281991e-58 |
| MsG0080048773.01 | MsG0380017663.01 | 0.827295 | 1.692864e-54 | 1.627575e-51 |
| MsG0080048849.01 | MsG0380017663.01 | 0.803153 | 3.994160e-49 | 1.992528e-46 |
| MsG0080048878.01 | MsG0380017663.01 | 0.826001 | 3.447030e-54 | 3.192785e-51 |
| MsG0080049040.01 | MsG0380017663.01 | 0.804596 | 2.002676e-49 | 1.036783e-46 |
| MsG0080049068.01 | MsG0380017663.01 | 0.828672 | 7.892805e-55 | 7.898539e-52 |
| MsG0080049069.01 | MsG0380017663.01 | 0.800329 | 1.516895e-48 | 7.043761e-46 |
| MsG0180000355.01 | MsG0380017663.01 | 0.812656 | 3.798042e-51 | 2.428754e-48 |
| MsG0180000599.01 | MsG0380017663.01 | 0.812767 | 3.591682e-51 | 2.303468e-48 |
| MsG0180000624.01 | MsG0380017663.01 | 0.819665 | 1.030857e-52 | 7.983050e-50 |
| MsG0180000785.01 | MsG0380017663.01 | 0.835949 | 1.245850e-56 | 1.546936e-53 |
| MsG0180001270.01 | MsG0380017663.01 | 0.816794 | 4.602278e-52 | 3.292961e-49 |
| MsG0180001610.01 | MsG0380017663.01 | 0.856936 | 2.295357e-62 | 5.569425e-59 |
| MsG0180001704.01 | MsG0380017663.01 | 0.803929 | 2.756922e-49 | 1.403118e-46 |
| MsG0180002399.01 | MsG0380017663.01 | 0.808354 | 3.228204e-50 | 1.841827e-47 |
| MsG0180002700.01 | MsG0380017663.01 | 0.813812 | 2.117337e-51 | 1.396850e-48 |
| MsG0180003353.01 | MsG0380017663.01 | 0.835953 | 1.242830e-56 | 1.543367e-53 |
| MsG0180003821.01 | MsG0380017663.01 | 0.824170 | 9.332713e-54 | 8.203711e-51 |
| MsG0180003885.01 | MsG0380017663.01 | 0.816957 | 4.229194e-52 | 3.039939e-49 |
| MsG0180004103.01 | MsG0380017663.01 | 0.817688 | 2.896895e-52 | 2.124162e-49 |
| MsG0180004192.01 | MsG0380017663.01 | 0.827040 | 1.948711e-54 | 1.859473e-51 |
| MsG0180004246.01 | MsG0380017663.01 | 0.818628 | 1.775303e-52 | 1.335785e-49 |
| MsG0180004428.01 | MsG0380017663.01 | 0.811424 | 7.049933e-51 | 4.362472e-48 |
| MsG0180004448.01 | MsG0380017663.01 | 0.806952 | 6.407564e-50 | 3.524012e-47 |
| MsG0180004466.01 | MsG0380017663.01 | 0.812512 | 4.084093e-51 | 2.601897e-48 |
| MsG0180004493.01 | MsG0380017663.01 | 0.814899 | 1.217955e-51 | 8.274301e-49 |
| MsG0180004605.01 | MsG0380017663.01 | -0.829461 | 5.081705e-55 | 5.204512e-52 |
| MsG0180004750.01 | MsG0380017663.01 | 0.827618 | 1.416329e-54 | 1.374304e-51 |
| MsG0180005169.01 | MsG0380017663.01 | 0.829744 | 4.338169e-55 | 4.480397e-52 |
| MsG0180005750.01 | MsG0380017663.01 | 0.804456 | 2.141280e-49 | 1.104552e-46 |
| MsG0180005807.01 | MsG0380017663.01 | 0.824855 | 6.438120e-54 | 5.771850e-51 |
| MsG0180006031.01 | MsG0380017663.01 | 0.815679 | 8.172205e-52 | 5.671832e-49 |
| MsG0180006096.01 | MsG0380017663.01 | 0.805413 | 1.350786e-49 | 7.141900e-47 |
| MsG0280010564.01 | MsG0380017663.01 | 0.805573 | 1.250467e-49 | 6.638519e-47 |
| MsG0280010916.01 | MsG0380017663.01 | 0.816886 | 4.389091e-52 | 3.148378e-49 |
| MsG0280011027.01 | MsG0380017663.01 | 0.813229 | 2.844280e-51 | 1.846800e-48 |
| MsG0280011255.01 | MsG0380017663.01 | 0.813761 | 2.173153e-51 | 1.431620e-48 |
| MsG0380013295.01 | MsG0380017663.01 | -0.812760 | 3.605441e-51 | 2.311853e-48 |
| MsG0380014909.01 | MsG0380017663.01 | 0.811434 | 7.015354e-51 | 4.342161e-48 |
| MsG0380015066.01 | MsG0380017663.01 | -0.801187 | 1.013412e-48 | 4.809186e-46 |
| MsG0380015533.01 | MsG0380017663.01 | 0.801653 | 8.134364e-49 | 3.905719e-46 |
| MsG0380015784.01 | MsG0380017663.01 | 0.831444 | 1.663203e-55 | 1.805268e-52 |
| MsG0380015896.01 | MsG0380017663.01 | 0.833716 | 4.546161e-56 | 5.278835e-53 |
| MsG0380016284.01 | MsG0380017663.01 | 0.824732 | 6.881681e-54 | 6.147950e-51 |
| MsG0380016294.01 | MsG0380017663.01 | 0.834152 | 3.535086e-56 | 4.158935e-53 |
| MsG0380016347.01 | MsG0380017663.01 | -0.819033 | 1.436127e-52 | 1.092875e-49 |
| MsG0380016540.01 | MsG0380017663.01 | 0.846016 | 2.830498e-59 | 4.806109e-56 |
| MsG0380016671.01 | MsG0380017663.01 | 0.804462 | 2.135022e-49 | 1.101497e-46 |
| MsG0380016771.01 | MsG0380017663.01 | 0.815468 | 9.102944e-52 | 6.281575e-49 |
| MsG0380016864.01 | MsG0380017663.01 | 0.811322 | 7.418792e-51 | 4.578020e-48 |
| MsG0380017293.01 | MsG0380017663.01 | 0.819293 | 1.253122e-52 | 9.603702e-50 |
| MsG0380017663.01 | MsG0380017931.01 | 0.816331 | 5.842100e-52 | 4.127787e-49 |
| MsG0380017663.01 | MsG0380018037.01 | 0.827614 | 1.419166e-54 | 1.376947e-51 |
| MsG0380017663.01 | MsG0380018069.01 | 0.826598 | 2.485283e-54 | 2.341183e-51 |
| MsG0380017663.01 | MsG0480018091.01 | -0.842323 | 2.773876e-58 | 4.190786e-55 |
| MsG0380017663.01 | MsG0480018584.01 | 0.853146 | 2.898580e-61 | 6.201075e-58 |
| MsG0380017663.01 | MsG0480018850.01 | 0.806144 | 9.487967e-50 | 5.111378e-47 |
| MsG0380017663.01 | MsG0480018911.01 | 0.820489 | 6.675633e-53 | 5.289517e-50 |
| MsG0380017663.01 | MsG0480019007.01 | 0.825205 | 5.321750e-54 | 4.818856e-51 |
| MsG0380017663.01 | MsG0480020024.01 | 0.807311 | 5.377062e-50 | 2.985192e-47 |
| MsG0380017663.01 | MsG0480020502.01 | 0.820824 | 5.592988e-53 | 4.473176e-50 |
| MsG0380017663.01 | MsG0480020690.01 | 0.853172 | 2.847995e-61 | 6.098479e-58 |
| MsG0380017663.01 | MsG0480021060.01 | 0.807035 | 6.151544e-50 | 3.390649e-47 |
| MsG0380017663.01 | MsG0480021201.01 | 0.800841 | 1.192817e-48 | 5.611243e-46 |
| MsG0380017663.01 | MsG0480021248.01 | 0.832327 | 1.006900e-55 | 1.121637e-52 |
| MsG0380017663.01 | MsG0480021768.01 | 0.824606 | 7.368164e-54 | 6.559049e-51 |
| MsG0380017663.01 | MsG0480022149.01 | 0.814178 | 1.758729e-51 | 1.171782e-48 |
| MsG0380017663.01 | MsG0480022200.01 | 0.815364 | 9.599953e-52 | 6.605325e-49 |
| MsG0380017663.01 | MsG0480022624.01 | 0.801134 | 1.038978e-48 | 4.924137e-46 |
| MsG0380017663.01 | MsG0480023073.01 | 0.817223 | 3.685948e-52 | 2.668519e-49 |
| MsG0380017663.01 | MsG0480023314.01 | 0.802689 | 4.979651e-49 | 2.454933e-46 |
| MsG0380017663.01 | MsG0480023723.01 | 0.818425 | 1.973760e-52 | 1.476997e-49 |
| MsG0380017663.01 | MsG0480023739.01 | 0.809161 | 2.169049e-50 | 1.264179e-47 |
| MsG0380017663.01 | MsG0480023909.01 | 0.802409 | 5.686537e-49 | 2.783612e-46 |
| MsG0380017663.01 | MsG0580025055.01 | 0.824137 | 9.500579e-54 | 8.343276e-51 |
| MsG0380017663.01 | MsG0580025561.01 | -0.824994 | 5.968916e-54 | 5.372550e-51 |
| MsG0380017663.01 | MsG0580025772.01 | 0.816388 | 5.673729e-52 | 4.014806e-49 |
| MsG0380017663.01 | MsG0580025971.01 | 0.810561 | 1.084031e-50 | 6.555887e-48 |
| MsG0380017663.01 | MsG0580026159.01 | -0.863992 | 1.674985e-64 | 5.176901e-61 |
| MsG0380017663.01 | MsG0580026271.01 | 0.806567 | 7.727333e-50 | 4.208026e-47 |
| MsG0380017663.01 | MsG0580027394.01 | 0.830550 | 2.756469e-55 | 2.913574e-52 |
| MsG0380017663.01 | MsG0580028551.01 | 0.817048 | 4.036387e-52 | 2.908370e-49 |
| MsG0380017663.01 | MsG0580028598.01 | 0.802621 | 5.143162e-49 | 2.531143e-46 |
| MsG0380017663.01 | MsG0580028630.01 | 0.808675 | 2.756703e-50 | 1.585942e-47 |
| MsG0380017663.01 | MsG0580029529.01 | 0.822174 | 2.727694e-53 | 2.265826e-50 |
| MsG0380017663.01 | MsG0580029879.01 | 0.829626 | 4.632427e-55 | 4.767295e-52 |
| MsG0380017663.01 | MsG0680030515.01 | 0.817676 | 2.914857e-52 | 2.136634e-49 |
| MsG0380017663.01 | MsG0680030858.01 | 0.819793 | 9.634986e-53 | 7.488900e-50 |
| MsG0380017663.01 | MsG0680031010.01 | 0.828246 | 1.000419e-54 | 9.887952e-52 |
| MsG0380017663.01 | MsG0680031939.01 | 0.807271 | 5.485227e-50 | 3.042002e-47 |
| MsG0380017663.01 | MsG0680032827.01 | 0.817257 | 3.622655e-52 | 2.625051e-49 |
| MsG0380017663.01 | MsG0680032830.01 | 0.832433 | 9.478406e-56 | 1.059248e-52 |
| MsG0380017663.01 | MsG0680032832.01 | 0.801842 | 7.438304e-49 | 3.588895e-46 |
| MsG0380017663.01 | MsG0680033377.01 | 0.830182 | 3.391739e-55 | 3.547277e-52 |
| MsG0380017663.01 | MsG0680034064.01 | 0.812459 | 4.195121e-51 | 2.668949e-48 |
| MsG0380017663.01 | MsG0680034767.01 | 0.812991 | 3.208706e-51 | 2.070136e-48 |
| MsG0380017663.01 | MsG0680035877.01 | 0.810767 | 9.787729e-51 | 5.952064e-48 |
| MsG0380017663.01 | MsG0780035960.01 | 0.816128 | 6.485471e-52 | 4.556750e-49 |
| MsG0380017663.01 | MsG0780036385.01 | 0.814818 | 1.269268e-51 | 8.604320e-49 |
| MsG0380017663.01 | MsG0780036517.01 | 0.817434 | 3.305193e-52 | 2.406809e-49 |
| MsG0380017663.01 | MsG0780036659.01 | 0.811291 | 7.534833e-51 | 4.645840e-48 |
| MsG0380017663.01 | MsG0780036792.01 | 0.812581 | 3.944995e-51 | 2.517789e-48 |
| MsG0380017663.01 | MsG0780036803.01 | 0.800587 | 1.343637e-48 | 6.280109e-46 |
| MsG0380017663.01 | MsG0780037157.01 | 0.823363 | 1.442114e-53 | 1.238971e-50 |
| MsG0380017663.01 | MsG0780037395.01 | 0.808952 | 2.405043e-50 | 1.393792e-47 |
| MsG0380017663.01 | MsG0780037701.01 | 0.809963 | 1.459116e-50 | 8.686944e-48 |
| MsG0380017663.01 | MsG0780038056.01 | 0.837423 | 5.245316e-57 | 6.810215e-54 |
| MsG0380017663.01 | MsG0780038784.01 | 0.806725 | 7.156270e-50 | 3.912852e-47 |
| MsG0380017663.01 | MsG0780040278.01 | 0.809562 | 1.779528e-50 | 1.048289e-47 |
| MsG0380017663.01 | MsG0780040388.01 | 0.836993 | 6.754942e-57 | 8.656285e-54 |
| MsG0380017663.01 | MsG0780041091.01 | 0.831089 | 2.033621e-55 | 2.184135e-52 |
| MsG0380017663.01 | MsG0780041138.01 | 0.810581 | 1.073608e-50 | 6.496226e-48 |
| MsG0380017663.01 | MsG0780041391.01 | 0.818129 | 2.302986e-52 | 1.709227e-49 |
| MsG0380017663.01 | MsG0780041435.01 | 0.802179 | 6.343075e-49 | 3.086625e-46 |
| MsG0380017663.01 | MsG0780041634.01 | 0.804957 | 1.683452e-49 | 8.797398e-47 |
| MsG0380017663.01 | MsG0880041947.01 | 0.816801 | 4.586183e-52 | 3.282005e-49 |
| MsG0380017663.01 | MsG0880042022.01 | 0.807860 | 4.111768e-50 | 2.315422e-47 |
| MsG0380017663.01 | MsG0880042026.01 | 0.816119 | 6.515552e-52 | 4.576839e-49 |
| MsG0380017663.01 | MsG0880043955.01 | 0.804547 | 2.050264e-49 | 1.060060e-46 |
| MsG0380017663.01 | MsG0880043965.01 | 0.812288 | 4.572622e-51 | 2.895716e-48 |
| MsG0380017663.01 | MsG0880044005.01 | 0.833919 | 4.042997e-56 | 4.724372e-53 |
| MsG0380017663.01 | MsG0880044036.01 | 0.800933 | 1.142478e-48 | 5.387043e-46 |
| MsG0380017663.01 | MsG0880044142.01 | 0.804385 | 2.216280e-49 | 1.141147e-46 |
| MsG0380017663.01 | MsG0880044392.01 | 0.823029 | 1.725772e-53 | 1.468971e-50 |
| MsG0380017663.01 | MsG0880044487.01 | 0.831916 | 1.272454e-55 | 1.400704e-52 |
| MsG0380017663.01 | MsG0880044691.01 | 0.834425 | 3.019978e-56 | 3.582678e-53 |
| MsG0380017663.01 | MsG0880044985.01 | 0.806014 | 1.010225e-49 | 5.424460e-47 |
| MsG0380017663.01 | MsG0880045668.01 | 0.805634 | 1.214374e-49 | 6.457200e-47 |
| MsG0380017663.01 | MsG0880045722.01 | 0.817610 | 3.016295e-52 | 2.206982e-49 |
| MsG0380017663.01 | MsG0880046765.01 | 0.842094 | 3.188651e-58 | 4.782937e-55 |
| MsG0380017663.01 | MsG0880047322.01 | 0.817981 | 2.487406e-52 | 1.838529e-49 |
| MsG0380017663.01 | MsG0880047394.01 | 0.801422 | 9.070305e-49 | 4.329901e-46 |
| MsG0380017663.01 | MsG0880047422.01 | -0.824639 | 7.238623e-54 | 6.449696e-51 |
| MsG0380017663.01 | MsG0880047481.01 | -0.809486 | 1.847465e-50 | 1.086072e-47 |
| MsG0380017663.01 | MsG0880047538.01 | 0.823753 | 1.168911e-53 | 1.015609e-50 |
| MsG0380017663.01 | MsG0880047703.01 | 0.818124 | 2.308659e-52 | 1.713202e-49 |
| MsG0280006996.01 | MsG0380017663.01 | 0.847127 | 1.407352e-59 | 2.476994e-56 |
| MsG0280007193.01 | MsG0380017663.01 | -0.815403 | 9.410292e-52 | 6.481722e-49 |
| MsG0280007307.01 | MsG0380017663.01 | 0.828063 | 1.107201e-54 | 1.088581e-51 |
| MsG0280007575.01 | MsG0380017663.01 | 0.812614 | 3.880073e-51 | 2.478504e-48 |
| MsG0280007647.01 | MsG0380017663.01 | 0.815638 | 8.345612e-52 | 5.785816e-49 |
| MsG0280007771.01 | MsG0380017663.01 | 0.813853 | 2.073856e-51 | 1.369607e-48 |
| MsG0280007903.01 | MsG0380017663.01 | 0.826808 | 2.213409e-54 | 2.097857e-51 |
| MsG0280008709.01 | MsG0380017663.01 | 0.802702 | 4.948439e-49 | 2.440416e-46 |
| MsG0280008928.01 | MsG0380017663.01 | 0.819776 | 9.726178e-53 | 7.555866e-50 |
| MsG0280009256.01 | MsG0380017663.01 | 0.822547 | 2.234339e-53 | 1.876088e-50 |
| MsG0280009756.01 | MsG0380017663.01 | 0.819613 | 1.059536e-52 | 8.192888e-50 |
| MsG0280010353.01 | MsG0380017663.01 | 0.812504 | 4.101849e-51 | 2.612579e-48 |
| MsG0280010503.01 | MsG0380017663.01 | 0.811749 | 5.992281e-51 | 3.739802e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017663.01.T01 | MTR_3g109700 | 79.268 | 164 | 8 | 1 | 1 | 138 | 1 | 164 | 5.33e-80 | 236 |
| MsG0380017663.01.T01 | MTR_3g109700 | 77.515 | 169 | 12 | 1 | 1 | 143 | 1 | 169 | 6.54e-80 | 236 |
| MsG0380017663.01.T01 | MTR_3g109700 | 78.313 | 166 | 10 | 1 | 1 | 140 | 1 | 166 | 1.18e-79 | 234 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017663.01.T01 | AT4G32900 | 50.296 | 169 | 58 | 2 | 1 | 143 | 1 | 169 | 1.12e-49 | 159 |
| MsG0380017663.01.T01 | AT4G32900 | 51.220 | 164 | 54 | 2 | 1 | 138 | 1 | 164 | 1.73e-49 | 158 |
| MsG0380017663.01.T01 | AT4G32900 | 51.220 | 164 | 54 | 2 | 1 | 138 | 1 | 164 | 1.73e-49 | 158 |
| MsG0380017663.01.T01 | AT4G32900 | 52.632 | 133 | 62 | 1 | 1 | 132 | 1 | 133 | 8.04e-41 | 135 |
| MsG0380017663.01.T01 | AT5G16870 | 39.785 | 93 | 30 | 1 | 77 | 143 | 54 | 146 | 1.70e-13 | 65.5 |
Find 55 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGGGCCAAAAGCAATTC+TGG | 0.238209 | 3:+99275848 | MsG0380017663.01.T01:intron |
| TGCTGATCAAGAACTTAAAA+TGG | 0.256898 | 3:+99273746 | MsG0380017663.01.T01:CDS |
| ACCCAGTATCTGTCATCTTC+AGG | 0.301904 | 3:+99275654 | MsG0380017663.01.T01:intron |
| TCTTTCCAGATTTCATCTTT+AGG | 0.306077 | 3:-99274319 | None:intergenic |
| GTTAACCTATGGTCTGTCTT+CGG | 0.322394 | 3:+99275952 | MsG0380017663.01.T01:three_prime_UTR |
| TTAACCTATGGTCTGTCTTC+GGG | 0.327219 | 3:+99275953 | MsG0380017663.01.T01:three_prime_UTR |
| TGTGTCAGGTTCTGGTTGTT+AGG | 0.329495 | 3:+99274291 | MsG0380017663.01.T01:intron |
| TGCTATGTTCTTATCCGGTT+TGG | 0.334810 | 3:-99273306 | None:intergenic |
| AGGAAGCAGCTGAGGGTATT+GGG | 0.355627 | 3:+99275142 | MsG0380017663.01.T01:CDS |
| ACCGAATCCAGAATTGCTTT+TGG | 0.356047 | 3:-99275855 | None:intergenic |
| CTTGTCATTGGTTTCATTTG+TGG | 0.367500 | 3:+99273624 | MsG0380017663.01.T01:CDS |
| TTCATTCCAGGTCTTGTCAT+TGG | 0.373028 | 3:+99273612 | MsG0380017663.01.T01:CDS |
| AAGGAAGCAGCTGAGGGTAT+TGG | 0.388038 | 3:+99275141 | MsG0380017663.01.T01:CDS |
| CAAGACCTAAAGATGAAATC+TGG | 0.399487 | 3:+99274314 | MsG0380017663.01.T01:CDS |
| TCAACTGCTATGTTCTTATC+CGG | 0.400726 | 3:-99273311 | None:intergenic |
| GCAATTCTGGATTCGGTGAC+TGG | 0.400755 | 3:+99275861 | MsG0380017663.01.T01:CDS |
| AAGCCAGAGAATTTCATTCC+AGG | 0.410494 | 3:+99273600 | MsG0380017663.01.T01:CDS |
| CAACTCTCTGTCTCAACTAA+TGG | 0.417851 | 3:+99273723 | MsG0380017663.01.T01:CDS |
| TCAAAGACTGTTCTTGCTGT+TGG | 0.433145 | 3:+99275688 | MsG0380017663.01.T01:CDS |
| GAAACAACAAGAAAAGCAAA+AGG | 0.436943 | 3:+99273554 | MsG0380017663.01.T01:intron |
| GCCAAAAGCAATTCTGGATT+CGG | 0.450419 | 3:+99275854 | MsG0380017663.01.T01:CDS |
| TTGGATAAGTGATTTCTAGT+TGG | 0.453255 | 3:-99273669 | None:intergenic |
| AGCCAGGCTTTGTTAACCTA+TGG | 0.473264 | 3:+99275941 | MsG0380017663.01.T01:three_prime_UTR |
| AGACCTGGAATGAAATTCTC+TGG | 0.481100 | 3:-99273603 | None:intergenic |
| TTTGATCAGGAATAAGCTAA+AGG | 0.481546 | 3:+99275122 | MsG0380017663.01.T01:intron |
| CAACCTAAAATCCACCGAAC+AGG | 0.481970 | 3:+99273375 | MsG0380017663.01.T01:CDS |
| GTTATTGAAGAATACCTGTT+CGG | 0.492171 | 3:-99273389 | None:intergenic |
| TGTCATCTTCAGGTTTCAGC+AGG | 0.498407 | 3:+99275664 | MsG0380017663.01.T01:CDS |
| GGATTCGGTGACTGGAAGGT+TGG | 0.507459 | 3:+99275869 | MsG0380017663.01.T01:CDS |
| GACCATAGGTTAACAAAGCC+TGG | 0.510702 | 3:-99275943 | None:intergenic |
| CTGGCTGATTTATCACGCTA+TGG | 0.514136 | 3:-99275924 | None:intergenic |
| ACTGTTCTTGCTGTTGGACC+TGG | 0.520353 | 3:+99275694 | MsG0380017663.01.T01:CDS |
| GCATCGGAGACAACAAAAGT+AGG | 0.520501 | 3:-99275168 | None:intergenic |
| AAACAACAAGAAAAGCAAAA+GGG | 0.522970 | 3:+99273555 | MsG0380017663.01.T01:CDS |
| CCCGCAAAACAAACAAATTG+AGG | 0.525883 | 3:-99273268 | None:intergenic |
| TACCTGTGTTCGTCCTGCAT+CGG | 0.526970 | 3:-99275184 | None:intergenic |
| TTCTGGATTCGGTGACTGGA+AGG | 0.541644 | 3:+99275865 | MsG0380017663.01.T01:CDS |
| TCAAAATTAATTTCAACGCA+AGG | 0.544145 | 3:+99273342 | MsG0380017663.01.T01:five_prime_UTR |
| TGTATGGCAGATGCTGCCAC+CGG | 0.557778 | 3:+99274491 | MsG0380017663.01.T01:intron |
| AACATGTTGTTACTTATACA+AGG | 0.564493 | 3:+99276057 | MsG0380017663.01.T01:three_prime_UTR |
| ATGAAACCAATGACAAGACC+TGG | 0.577308 | 3:-99273618 | None:intergenic |
| ATATGCTTCAGTGACCAAAC+CGG | 0.579001 | 3:+99273292 | MsG0380017663.01.T01:five_prime_UTR |
| ATTGAAGAATACCTGTTCGG+TGG | 0.590827 | 3:-99273386 | None:intergenic |
| AAGAAAAGCAAAAGGGCGAA+TGG | 0.601251 | 3:+99273562 | MsG0380017663.01.T01:CDS |
| CATCGGAGACAACAAAAGTA+GGG | 0.602209 | 3:-99275167 | None:intergenic |
| AAAGCAACACAAAGCTAACC+AGG | 0.602781 | 3:-99275712 | None:intergenic |
| TAAGCTAAAGGAAGCAGCTG+AGG | 0.603082 | 3:+99275134 | MsG0380017663.01.T01:CDS |
| CTCCGATGCAGGACGAACAC+AGG | 0.606811 | 3:+99275182 | MsG0380017663.01.T01:CDS |
| CGTTAATTCAGCATACATGC+CGG | 0.627029 | 3:-99274510 | None:intergenic |
| CATAGCGTGATAAATCAGCC+AGG | 0.628311 | 3:+99275925 | MsG0380017663.01.T01:exon |
| CATTAGTTGAGACAGAGAGT+TGG | 0.635902 | 3:-99273722 | None:intergenic |
| AAGCTAAAGGAAGCAGCTGA+GGG | 0.643466 | 3:+99275135 | MsG0380017663.01.T01:CDS |
| TGTGCCCGAAGACAGACCAT+AGG | 0.675286 | 3:-99275957 | None:intergenic |
| TAATTCAGCATACATGCCGG+TGG | 0.683317 | 3:-99274507 | None:intergenic |
| TGTATGCTGAATTAACGCGA+AGG | 0.695292 | 3:+99274516 | MsG0380017663.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACTATTCATTAAAATAAT+TGG | - | Chr3:99273516-99273535 | None:intergenic | 10.0% |
| !! | TACTATTCATTAAAATAATT+GGG | - | Chr3:99273515-99273534 | None:intergenic | 10.0% |
| !! | TTCAACTTATTTAAAAAAAA+TGG | - | Chr3:99274102-99274121 | None:intergenic | 10.0% |
| !!! | GTATTTTATAAAATTGTTAC+CGG | - | Chr3:99273897-99273916 | None:intergenic | 15.0% |
| !! | AAAAACATATATCCATGTAA+AGG | - | Chr3:99274471-99274490 | None:intergenic | 20.0% |
| !! | AACAACAAATGTTTATTCAA+AGG | - | Chr3:99274000-99274019 | None:intergenic | 20.0% |
| !! | AATAATATCGAATTTCATTC+AGG | + | Chr3:99274883-99274902 | MsG0380017663.01.T01:intron | 20.0% |
| !! | ATTCATTAAAATAATTGGGT+TGG | - | Chr3:99273511-99273530 | None:intergenic | 20.0% |
| !! | TCAATTCAATTCAATGTTTA+GGG | + | Chr3:99273482-99273501 | MsG0380017663.01.T01:intron | 20.0% |
| !! | TTCAATTCAATTCAATGTTT+AGG | + | Chr3:99273481-99273500 | MsG0380017663.01.T01:intron | 20.0% |
| !!! | ATGGATATATGTTTTTTGTA+TGG | + | Chr3:99274475-99274494 | MsG0380017663.01.T01:intron | 20.0% |
| !!! | CAAATTTTGTACAGAAAAAA+GGG | - | Chr3:99274704-99274723 | None:intergenic | 20.0% |
| !!! | CAGTATTGTAAATATACTTT+TGG | + | Chr3:99275072-99275091 | MsG0380017663.01.T01:intron | 20.0% |
| !!! | CTATAACACAATCTTTTTAA+CGG | - | Chr3:99274606-99274625 | None:intergenic | 20.0% |
| !!! | TCTATTTTACAAATGTTATG+AGG | + | Chr3:99274180-99274199 | MsG0380017663.01.T01:intron | 20.0% |
| ! | AAACAACAAGAAAAGCAAAA+GGG | + | Chr3:99273555-99273574 | MsG0380017663.01.T01:CDS | 25.0% |
| ! | AAATGTAAAATGTTTGTGTC+AGG | + | Chr3:99274277-99274296 | MsG0380017663.01.T01:intron | 25.0% |
| ! | ATAGTTTACAACAGAATAAC+AGG | - | Chr3:99273845-99273864 | None:intergenic | 25.0% |
| ! | GAAAAAAGGGATTATATGAA+TGG | - | Chr3:99274691-99274710 | None:intergenic | 25.0% |
| ! | GGTAATAATTGCTTGATATA+TGG | + | Chr3:99275203-99275222 | MsG0380017663.01.T01:intron | 25.0% |
| ! | TAATAATACCCATTTGGATT+TGG | - | Chr3:99273424-99273443 | None:intergenic | 25.0% |
| ! | TCAAAATACTTATGTATGAC+AGG | + | Chr3:99275798-99275817 | MsG0380017663.01.T01:intron | 25.0% |
| ! | TCAAAATTAATTTCAACGCA+AGG | + | Chr3:99273342-99273361 | MsG0380017663.01.T01:five_prime_UTR | 25.0% |
| ! | TCTTTGCATTTAATTAAAGC+CGG | - | Chr3:99273804-99273823 | None:intergenic | 25.0% |
| ! | TGAATATCCTGTTAAAAATC+TGG | - | Chr3:99275590-99275609 | None:intergenic | 25.0% |
| ! | TGTCTATTACAAACTCTATT+AGG | + | Chr3:99274414-99274433 | MsG0380017663.01.T01:intron | 25.0% |
| !! | AACATGTTGTTACTTATACA+AGG | + | Chr3:99276057-99276076 | MsG0380017663.01.T01:three_prime_UTR | 25.0% |
| !! | ATTTTACAAATGTTATGAGG+AGG | + | Chr3:99274183-99274202 | MsG0380017663.01.T01:intron | 25.0% |
| !! | ATTTTCAGAATTAAGCAGAA+AGG | - | Chr3:99273451-99273470 | None:intergenic | 25.0% |
| !! | CTATGTGATAAGAGTTTTTA+AGG | - | Chr3:99275251-99275270 | None:intergenic | 25.0% |
| !! | GCAAATTTTGTACAGAAAAA+AGG | - | Chr3:99274705-99274724 | None:intergenic | 25.0% |
| !!! | AATTTTAGTATCTGCTAACT+AGG | + | Chr3:99275996-99276015 | MsG0380017663.01.T01:three_prime_UTR | 25.0% |
| !!! | ATTTTAGTATCTGCTAACTA+GGG | + | Chr3:99275997-99276016 | MsG0380017663.01.T01:three_prime_UTR | 25.0% |
| !!! | GAAATTAGTTGGTTAGTTTT+GGG | + | Chr3:99275510-99275529 | MsG0380017663.01.T01:intron | 25.0% |
| !!! | TTTTTGGTTGTTATCCTTAT+TGG | + | Chr3:99274914-99274933 | MsG0380017663.01.T01:intron | 25.0% |
| AAACATGTTCCAAATCCAAA+TGG | + | Chr3:99273412-99273431 | MsG0380017663.01.T01:intron | 30.0% | |
| AACATGTTCCAAATCCAAAT+GGG | + | Chr3:99273413-99273432 | MsG0380017663.01.T01:intron | 30.0% | |
| AGGCTAGTATACTAAAAAGA+TGG | - | Chr3:99274445-99274464 | None:intergenic | 30.0% | |
| ATTTGCAGCAAATTAACCAA+CGG | - | Chr3:99275469-99275488 | None:intergenic | 30.0% | |
| CTGTTAAAAATCTGGATCAA+TGG | - | Chr3:99275582-99275601 | None:intergenic | 30.0% | |
| GAAACAACAAGAAAAGCAAA+AGG | + | Chr3:99273554-99273573 | MsG0380017663.01.T01:intron | 30.0% | |
| GGCTAATAATAATACCCATT+TGG | - | Chr3:99273430-99273449 | None:intergenic | 30.0% | |
| GTTATTGAAGAATACCTGTT+CGG | - | Chr3:99273392-99273411 | None:intergenic | 30.0% | |
| TAAATGAGCCAATAACAGAT+TGG | - | Chr3:99273938-99273957 | None:intergenic | 30.0% | |
| TAATTGCTTGATATATGGCT+AGG | + | Chr3:99275208-99275227 | MsG0380017663.01.T01:intron | 30.0% | |
| TAGGAAAGCTTACATCAAAT+AGG | + | Chr3:99275400-99275419 | MsG0380017663.01.T01:intron | 30.0% | |
| TCTTTCCAGATTTCATCTTT+AGG | - | Chr3:99274322-99274341 | None:intergenic | 30.0% | |
| TGCTGATCAAGAACTTAAAA+TGG | + | Chr3:99273746-99273765 | MsG0380017663.01.T01:CDS | 30.0% | |
| TTCATCACTTTCTCATACTA+TGG | + | Chr3:99273778-99273797 | MsG0380017663.01.T01:intron | 30.0% | |
| TTTGATCAGGAATAAGCTAA+AGG | + | Chr3:99275122-99275141 | MsG0380017663.01.T01:intron | 30.0% | |
| ! | CATTGATCCAGATTTTTAAC+AGG | + | Chr3:99275580-99275599 | MsG0380017663.01.T01:intron | 30.0% |
| ! | TTCCTTTACATCTAAAGCAA+AGG | + | Chr3:99274743-99274762 | MsG0380017663.01.T01:intron | 30.0% |
| ! | TTGCAAGTCACAACAATTTT+GGG | - | Chr3:99275014-99275033 | None:intergenic | 30.0% |
| ! | TTTTAGTATCTGCTAACTAG+GGG | + | Chr3:99275998-99276017 | MsG0380017663.01.T01:three_prime_UTR | 30.0% |
| ! | TTTTATCATGAAACCGATGT+TGG | - | Chr3:99274560-99274579 | None:intergenic | 30.0% |
| !! | GTTAATTTGCTGCAAATAGA+GGG | + | Chr3:99275472-99275491 | MsG0380017663.01.T01:intron | 30.0% |
| !! | TACAAAATTTGCTACAGTGA+AGG | + | Chr3:99274713-99274732 | MsG0380017663.01.T01:intron | 30.0% |
| !! | TCAATAGAGCACTCTATTTT+TGG | + | Chr3:99276021-99276040 | MsG0380017663.01.T01:three_prime_UTR | 30.0% |
| !! | TCAGTAGTTTTACCTCTAAT+AGG | - | Chr3:99274026-99274045 | None:intergenic | 30.0% |
| !! | TTAATTTGCTGCAAATAGAG+GGG | + | Chr3:99275473-99275492 | MsG0380017663.01.T01:intron | 30.0% |
| !! | TTGGATAAGTGATTTCTAGT+TGG | - | Chr3:99273672-99273691 | None:intergenic | 30.0% |
| !! | TTTGTTGTTGATCCTATTAG+AGG | + | Chr3:99274011-99274030 | MsG0380017663.01.T01:intron | 30.0% |
| !!! | CATTCAGGCAACATATTTTT+TGG | + | Chr3:99274898-99274917 | MsG0380017663.01.T01:intron | 30.0% |
| !!! | GACTATTTTTGTCTTCTGTT+AGG | + | Chr3:99275364-99275383 | MsG0380017663.01.T01:intron | 30.0% |
| !!! | GGAAATTAGTTGGTTAGTTT+TGG | + | Chr3:99275509-99275528 | MsG0380017663.01.T01:intron | 30.0% |
| !!! | TCCTCAATTTGTTTGTTTTG+CGG | + | Chr3:99273267-99273286 | MsG0380017663.01.T01:five_prime_UTR | 30.0% |
| AAAATGTTTGTGTCAGGTTC+TGG | + | Chr3:99274283-99274302 | MsG0380017663.01.T01:intron | 35.0% | |
| AATCTGGATCAATGGAACAT+TGG | - | Chr3:99275574-99275593 | None:intergenic | 35.0% | |
| AGTTTCTGCCAATCTGTTAT+TGG | + | Chr3:99273927-99273946 | MsG0380017663.01.T01:intron | 35.0% | |
| ATCCAGTAAAGAAGTTCGTA+GGG | - | Chr3:99274237-99274256 | None:intergenic | 35.0% | |
| CAAGACCTAAAGATGAAATC+TGG | + | Chr3:99274314-99274333 | MsG0380017663.01.T01:CDS | 35.0% | |
| CGAAAGAAAGGGAAATTAGT+TGG | + | Chr3:99275499-99275518 | MsG0380017663.01.T01:intron | 35.0% | |
| CTTATTCCTGATCAAAATCC+AGG | - | Chr3:99275118-99275137 | None:intergenic | 35.0% | |
| GATGTAAGCTTTCCTAGTTA+AGG | - | Chr3:99275396-99275415 | None:intergenic | 35.0% | |
| GGAGCTTATTATAGCCAATA+AGG | - | Chr3:99274931-99274950 | None:intergenic | 35.0% | |
| TACAAATGTTATGAGGAGGA+GGG | + | Chr3:99274187-99274206 | MsG0380017663.01.T01:intron | 35.0% | |
| TCAACTGCTATGTTCTTATC+CGG | - | Chr3:99273314-99273333 | None:intergenic | 35.0% | |
| TCTTAGGAATGCATGTTGAA+GGG | + | Chr3:99275312-99275331 | MsG0380017663.01.T01:intron | 35.0% | |
| TTACAAATGTTATGAGGAGG+AGG | + | Chr3:99274186-99274205 | MsG0380017663.01.T01:intron | 35.0% | |
| TTCTTAGGAATGCATGTTGA+AGG | + | Chr3:99275311-99275330 | MsG0380017663.01.T01:intron | 35.0% | |
| ! | AATAGTCTCTAAAGAGTGTG+AGG | - | Chr3:99275351-99275370 | None:intergenic | 35.0% |
| ! | ATATATCCATGTAAAGGCAC+AGG | - | Chr3:99274465-99274484 | None:intergenic | 35.0% |
| ! | CTGAATACTTTTGCAGTAAC+CGG | + | Chr3:99274955-99274974 | MsG0380017663.01.T01:intron | 35.0% |
| ! | CTTGCAAGTCACAACAATTT+TGG | - | Chr3:99275015-99275034 | None:intergenic | 35.0% |
| ! | GGTGGATGAGAATATTTTGT+TGG | - | Chr3:99273691-99273710 | None:intergenic | 35.0% |
| ! | TGCCTTTGCTTTAGATGTAA+AGG | - | Chr3:99274748-99274767 | None:intergenic | 35.0% |
| ! | TTGTAAGCACTGTGTGATAA+CGG | + | Chr3:99274646-99274665 | MsG0380017663.01.T01:intron | 35.0% |
| !! | ACTGCAAAAGTATTCAGCAA+TGG | - | Chr3:99274952-99274971 | None:intergenic | 35.0% |
| !! | CTGTTATTGGCTCATTTAGA+AGG | + | Chr3:99273940-99273959 | MsG0380017663.01.T01:intron | 35.0% |
| !! | CTTGTCATTGGTTTCATTTG+TGG | + | Chr3:99273624-99273643 | MsG0380017663.01.T01:CDS | 35.0% |
| !! | GGTTAATTTGCTGCAAATAG+AGG | + | Chr3:99275471-99275490 | MsG0380017663.01.T01:intron | 35.0% |
| !! | GTTCTTGACTTGCTTTATGT+TGG | + | Chr3:99275735-99275754 | MsG0380017663.01.T01:intron | 35.0% |
| !!! | ATTAGTTGGTTAGTTTTGGG+TGG | + | Chr3:99275513-99275532 | MsG0380017663.01.T01:intron | 35.0% |
| !!! | CCTCAATTTGTTTGTTTTGC+GGG | + | Chr3:99273268-99273287 | MsG0380017663.01.T01:five_prime_UTR | 35.0% |
| !!! | TTAGTTGGTTAGTTTTGGGT+GGG | + | Chr3:99275514-99275533 | MsG0380017663.01.T01:intron | 35.0% |
| AAAGCAACACAAAGCTAACC+AGG | - | Chr3:99275715-99275734 | None:intergenic | 40.0% | |
| AAATAGGCCAAGCAATCAAG+TGG | + | Chr3:99275416-99275435 | MsG0380017663.01.T01:intron | 40.0% | |
| AACCTGAAGATGACAGATAC+TGG | - | Chr3:99275659-99275678 | None:intergenic | 40.0% | |
| AAGAAAAGCAAAAGGGCGAA+TGG | + | Chr3:99273562-99273581 | MsG0380017663.01.T01:CDS | 40.0% | |
| AAGCCAGAGAATTTCATTCC+AGG | + | Chr3:99273600-99273619 | MsG0380017663.01.T01:CDS | 40.0% | |
| AATAGGCCAAGCAATCAAGT+GGG | + | Chr3:99275417-99275436 | MsG0380017663.01.T01:intron | 40.0% | |
| ACAAATGTTATGAGGAGGAG+GGG | + | Chr3:99274188-99274207 | MsG0380017663.01.T01:intron | 40.0% | |
| ACCTGAAGATGACAGATACT+GGG | - | Chr3:99275658-99275677 | None:intergenic | 40.0% | |
| ACTGCTAATCGCAACTTCTT+AGG | + | Chr3:99275296-99275315 | MsG0380017663.01.T01:intron | 40.0% | |
| AGACCTGGAATGAAATTCTC+TGG | - | Chr3:99273606-99273625 | None:intergenic | 40.0% | |
| ATATGCTTCAGTGACCAAAC+CGG | + | Chr3:99273292-99273311 | MsG0380017663.01.T01:five_prime_UTR | 40.0% | |
| ATCATGAAACCGATGTTGGT+AGG | - | Chr3:99274556-99274575 | None:intergenic | 40.0% | |
| ATGAAACCAATGACAAGACC+TGG | - | Chr3:99273621-99273640 | None:intergenic | 40.0% | |
| ATTGAAGAATACCTGTTCGG+TGG | - | Chr3:99273389-99273408 | None:intergenic | 40.0% | |
| CAACTCTCTGTCTCAACTAA+TGG | + | Chr3:99273723-99273742 | MsG0380017663.01.T01:CDS | 40.0% | |
| CATCCAGTAAAGAAGTTCGT+AGG | - | Chr3:99274238-99274257 | None:intergenic | 40.0% | |
| CATCGGAGACAACAAAAGTA+GGG | - | Chr3:99275170-99275189 | None:intergenic | 40.0% | |
| CATCTGCTTACATTTCCTGT+TGG | - | Chr3:99275040-99275059 | None:intergenic | 40.0% | |
| CATTAGTTGAGACAGAGAGT+TGG | - | Chr3:99273725-99273744 | None:intergenic | 40.0% | |
| CCCAATGTCTTAAAAGAGAC+CGG | - | Chr3:99274977-99274996 | None:intergenic | 40.0% | |
| CCCGCAAAACAAACAAATTG+AGG | - | Chr3:99273271-99273290 | None:intergenic | 40.0% | |
| CGTTAATTCAGCATACATGC+CGG | - | Chr3:99274513-99274532 | None:intergenic | 40.0% | |
| GATGTTCATGCACATGCTAT+TGG | - | Chr3:99275780-99275799 | None:intergenic | 40.0% | |
| GCCAAAAGCAATTCTGGATT+CGG | + | Chr3:99275854-99275873 | MsG0380017663.01.T01:CDS | 40.0% | |
| GGATTTGAATGTTGCTCTCT+TGG | + | Chr3:99275819-99275838 | MsG0380017663.01.T01:intron | 40.0% | |
| GTTAACCTATGGTCTGTCTT+CGG | + | Chr3:99275952-99275971 | MsG0380017663.01.T01:three_prime_UTR | 40.0% | |
| GTTAGGAACATGCCTTAACT+AGG | + | Chr3:99275381-99275400 | MsG0380017663.01.T01:intron | 40.0% | |
| TCACTTTCTCATACTATGGC+CGG | + | Chr3:99273782-99273801 | MsG0380017663.01.T01:intron | 40.0% | |
| TGCTATGTTCTTATCCGGTT+TGG | - | Chr3:99273309-99273328 | None:intergenic | 40.0% | |
| TGTATGCTGAATTAACGCGA+AGG | + | Chr3:99274516-99274535 | MsG0380017663.01.T01:CDS | 40.0% | |
| TTAACCTATGGTCTGTCTTC+GGG | + | Chr3:99275953-99275972 | MsG0380017663.01.T01:three_prime_UTR | 40.0% | |
| TTAAGACATTGGGAACAGTG+CGG | + | Chr3:99274984-99275003 | MsG0380017663.01.T01:intron | 40.0% | |
| TTCCCTACGAACTTCTTTAC+TGG | + | Chr3:99274232-99274251 | MsG0380017663.01.T01:intron | 40.0% | |
| ! | AAGTCACAACAATTTTGGGC+TGG | - | Chr3:99275010-99275029 | None:intergenic | 40.0% |
| ! | ACCGAATCCAGAATTGCTTT+TGG | - | Chr3:99275858-99275877 | None:intergenic | 40.0% |
| ! | GCTCTCTTGGATTTGTTTCA+GGG | + | Chr3:99275832-99275851 | MsG0380017663.01.T01:intron | 40.0% |
| ! | TCAAAGACTGTTCTTGCTGT+TGG | + | Chr3:99275688-99275707 | MsG0380017663.01.T01:CDS | 40.0% |
| ! | TGCTCTCTTGGATTTGTTTC+AGG | + | Chr3:99275831-99275850 | MsG0380017663.01.T01:intron | 40.0% |
| ! | TTCATTCCAGGTCTTGTCAT+TGG | + | Chr3:99273612-99273631 | MsG0380017663.01.T01:CDS | 40.0% |
| !! | ATACCTGTTCGGTGGATTTT+AGG | - | Chr3:99273381-99273400 | None:intergenic | 40.0% |
| !!! | ACCGGTCTCTTTTAAGACAT+TGG | + | Chr3:99274973-99274992 | MsG0380017663.01.T01:intron | 40.0% |
| !!! | AGAGAGTTGGTTTTGAAGCT+TGG | - | Chr3:99273712-99273731 | None:intergenic | 40.0% |
| !!! | CCGGTCTCTTTTAAGACATT+GGG | + | Chr3:99274974-99274993 | MsG0380017663.01.T01:intron | 40.0% |
| AAGCCAACACAACACCTACA+CGG | + | Chr3:99273866-99273885 | MsG0380017663.01.T01:intron | 45.0% | |
| AAGCTAAAGGAAGCAGCTGA+GGG | + | Chr3:99275135-99275154 | MsG0380017663.01.T01:CDS | 45.0% | |
| ACCAATCCACCTACCAACAT+CGG | + | Chr3:99274544-99274563 | MsG0380017663.01.T01:intron | 45.0% | |
| ACCCAGTATCTGTCATCTTC+AGG | + | Chr3:99275654-99275673 | MsG0380017663.01.T01:intron | 45.0% | |
| AGACCAAGCTGTTGAACTCA+TGG | + | Chr3:99275539-99275558 | MsG0380017663.01.T01:intron | 45.0% | |
| ATAGGCCAAGCAATCAAGTG+GGG | + | Chr3:99275418-99275437 | MsG0380017663.01.T01:intron | 45.0% | |
| CAACCTAAAATCCACCGAAC+AGG | + | Chr3:99273375-99273394 | MsG0380017663.01.T01:CDS | 45.0% | |
| CATAGCGTGATAAATCAGCC+AGG | + | Chr3:99275925-99275944 | MsG0380017663.01.T01:exon | 45.0% | |
| GACCAAGCTGTTGAACTCAT+GGG | + | Chr3:99275540-99275559 | MsG0380017663.01.T01:intron | 45.0% | |
| GACCATAGGTTAACAAAGCC+TGG | - | Chr3:99275946-99275965 | None:intergenic | 45.0% | |
| GCATCGGAGACAACAAAAGT+AGG | - | Chr3:99275171-99275190 | None:intergenic | 45.0% | |
| TAAGCTAAAGGAAGCAGCTG+AGG | + | Chr3:99275134-99275153 | MsG0380017663.01.T01:CDS | 45.0% | |
| TAATTCAGCATACATGCCGG+TGG | - | Chr3:99274510-99274529 | None:intergenic | 45.0% | |
| TCCTGATCAAAATCCAGGTC+AGG | - | Chr3:99275113-99275132 | None:intergenic | 45.0% | |
| TTCAGGGCCAAAAGCAATTC+TGG | + | Chr3:99275848-99275867 | MsG0380017663.01.T01:intron | 45.0% | |
| ! | ATGAAACCGATGTTGGTAGG+TGG | - | Chr3:99274553-99274572 | None:intergenic | 45.0% |
| ! | CTGGCTGATTTATCACGCTA+TGG | - | Chr3:99275927-99275946 | None:intergenic | 45.0% |
| ! | TACTAGCCTGTGCCTTTACA+TGG | + | Chr3:99274456-99274475 | MsG0380017663.01.T01:intron | 45.0% |
| ! | TGCTGTTATTTACGCACCGT+TGG | + | Chr3:99275450-99275469 | MsG0380017663.01.T01:intron | 45.0% |
| ! | TGTCATCTTCAGGTTTCAGC+AGG | + | Chr3:99275664-99275683 | MsG0380017663.01.T01:CDS | 45.0% |
| ! | TGTGACTTGCAAGAACCAAC+AGG | + | Chr3:99275022-99275041 | MsG0380017663.01.T01:intron | 45.0% |
| ! | TGTGTCAGGTTCTGGTTGTT+AGG | + | Chr3:99274291-99274310 | MsG0380017663.01.T01:intron | 45.0% |
| !! | ACTTTTGTTGTCTCCGATGC+AGG | + | Chr3:99275171-99275190 | MsG0380017663.01.T01:CDS | 45.0% |
| !! | AGCCAGGCTTTGTTAACCTA+TGG | + | Chr3:99275941-99275960 | MsG0380017663.01.T01:three_prime_UTR | 45.0% |
| !! | CTGTTCGGTGGATTTTAGGT+TGG | - | Chr3:99273377-99273396 | None:intergenic | 45.0% |
| !! | TCCTGACCTGGATTTTGATC+AGG | + | Chr3:99275109-99275128 | MsG0380017663.01.T01:intron | 45.0% |
| !!! | GAGTTGGTTTTGAAGCTTGG+TGG | - | Chr3:99273709-99273728 | None:intergenic | 45.0% |
| ATAGAGGGGCAGCGAAAGAA+AGG | + | Chr3:99275487-99275506 | MsG0380017663.01.T01:intron | 50.0% | |
| CAGAGACATGAATCCTGACC+TGG | + | Chr3:99275097-99275116 | MsG0380017663.01.T01:intron | 50.0% | |
| CTCCCATGAGTTCAACAGCT+TGG | - | Chr3:99275545-99275564 | None:intergenic | 50.0% | |
| GCTAACCCCACTTGATTGCT+TGG | - | Chr3:99275426-99275445 | None:intergenic | 50.0% | |
| TACCTGTGTTCGTCCTGCAT+CGG | - | Chr3:99275187-99275206 | None:intergenic | 50.0% | |
| TAGAGGGGCAGCGAAAGAAA+GGG | + | Chr3:99275488-99275507 | MsG0380017663.01.T01:intron | 50.0% | |
| ! | AAGGAAGCAGCTGAGGGTAT+TGG | + | Chr3:99275141-99275160 | MsG0380017663.01.T01:CDS | 50.0% |
| ! | ACCGATGTTGGTAGGTGGAT+TGG | - | Chr3:99274548-99274567 | None:intergenic | 50.0% |
| ! | TAGCCGTGTAGGTGTTGTGT+TGG | - | Chr3:99273872-99273891 | None:intergenic | 50.0% |
| !! | ACTGTTCTTGCTGTTGGACC+TGG | + | Chr3:99275694-99275713 | MsG0380017663.01.T01:CDS | 50.0% |
| !! | AGGAAGCAGCTGAGGGTATT+GGG | + | Chr3:99275142-99275161 | MsG0380017663.01.T01:CDS | 50.0% |
| !! | GCAATTCTGGATTCGGTGAC+TGG | + | Chr3:99275861-99275880 | MsG0380017663.01.T01:CDS | 50.0% |
| !! | TTCTGGATTCGGTGACTGGA+AGG | + | Chr3:99275865-99275884 | MsG0380017663.01.T01:CDS | 50.0% |
| CAACACCTACACGGCTACAC+CGG | + | Chr3:99273875-99273894 | MsG0380017663.01.T01:intron | 55.0% | |
| TGTATGGCAGATGCTGCCAC+CGG | + | Chr3:99274491-99274510 | MsG0380017663.01.T01:intron | 55.0% | |
| TGTGCCCGAAGACAGACCAT+AGG | - | Chr3:99275960-99275979 | None:intergenic | 55.0% | |
| TGTTACCGGTGTAGCCGTGT+AGG | - | Chr3:99273883-99273902 | None:intergenic | 55.0% | |
| !! | GGATTCGGTGACTGGAAGGT+TGG | + | Chr3:99275869-99275888 | MsG0380017663.01.T01:CDS | 55.0% |
| CTCCGATGCAGGACGAACAC+AGG | + | Chr3:99275182-99275201 | MsG0380017663.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 99273256 | 99276117 | 99273256 | ID=MsG0380017663.01;Name=MsG0380017663.01 |
| Chr3 | mRNA | 99273256 | 99276117 | 99273256 | ID=MsG0380017663.01.T01;Parent=MsG0380017663.01;Name=MsG0380017663.01.T01;_AED=0.44;_eAED=0.48;_QI=111|0.5|0.85|1|0.66|0.71|7|183|186 |
| Chr3 | exon | 99273256 | 99273396 | 99273256 | ID=MsG0380017663.01.T01:exon:35635;Parent=MsG0380017663.01.T01 |
| Chr3 | exon | 99273555 | 99273767 | 99273555 | ID=MsG0380017663.01.T01:exon:35636;Parent=MsG0380017663.01.T01 |
| Chr3 | exon | 99274299 | 99274359 | 99274299 | ID=MsG0380017663.01.T01:exon:35637;Parent=MsG0380017663.01.T01 |
| Chr3 | exon | 99274501 | 99274537 | 99274501 | ID=MsG0380017663.01.T01:exon:35638;Parent=MsG0380017663.01.T01 |
| Chr3 | exon | 99275131 | 99275203 | 99275131 | ID=MsG0380017663.01.T01:exon:35639;Parent=MsG0380017663.01.T01 |
| Chr3 | exon | 99275660 | 99275724 | 99275660 | ID=MsG0380017663.01.T01:exon:35640;Parent=MsG0380017663.01.T01 |
| Chr3 | exon | 99275853 | 99276117 | 99275853 | ID=MsG0380017663.01.T01:exon:35641;Parent=MsG0380017663.01.T01 |
| Chr3 | five_prime_UTR | 99273256 | 99273366 | 99273256 | ID=MsG0380017663.01.T01:five_prime_utr;Parent=MsG0380017663.01.T01 |
| Chr3 | CDS | 99273367 | 99273396 | 99273367 | ID=MsG0380017663.01.T01:cds;Parent=MsG0380017663.01.T01 |
| Chr3 | CDS | 99273555 | 99273767 | 99273555 | ID=MsG0380017663.01.T01:cds;Parent=MsG0380017663.01.T01 |
| Chr3 | CDS | 99274299 | 99274359 | 99274299 | ID=MsG0380017663.01.T01:cds;Parent=MsG0380017663.01.T01 |
| Chr3 | CDS | 99274501 | 99274537 | 99274501 | ID=MsG0380017663.01.T01:cds;Parent=MsG0380017663.01.T01 |
| Chr3 | CDS | 99275131 | 99275203 | 99275131 | ID=MsG0380017663.01.T01:cds;Parent=MsG0380017663.01.T01 |
| Chr3 | CDS | 99275660 | 99275724 | 99275660 | ID=MsG0380017663.01.T01:cds;Parent=MsG0380017663.01.T01 |
| Chr3 | CDS | 99275853 | 99275934 | 99275853 | ID=MsG0380017663.01.T01:cds;Parent=MsG0380017663.01.T01 |
| Chr3 | three_prime_UTR | 99275935 | 99276117 | 99275935 | ID=MsG0380017663.01.T01:three_prime_utr;Parent=MsG0380017663.01.T01 |
| Gene Sequence |
| Protein sequence |
