AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0349220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0349220 MtrunA17_Chr3g0082521 95.561 428 13 1 1 428 1 422 0.0 843
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 106 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGAAAATGCTTCGTTTA+TGG 0.124552 3_1:-12618759 Msa0349220:CDS
CATGATGCTCTTGATGCTTC+TGG 0.168943 3_1:-12622472 Msa0349220:CDS
TACAGAGCTTGCAAGCTATT+TGG 0.200944 3_1:+12616775 None:intergenic
ACAACATCAACGAAGAATTT+TGG 0.218573 3_1:-12616902 Msa0349220:three_prime_UTR
CATTAACAGGCATGTTGATT+TGG 0.237546 3_1:-12621116 Msa0349220:CDS
TGGACACAGCATTAGACTTT+TGG 0.265318 3_1:-12616820 Msa0349220:three_prime_UTR
AAAATGAAGGAGGGCAAAAT+TGG 0.270665 3_1:+12622572 None:intergenic
TCTGTTGTCTTTCCATTTGT+TGG 0.275836 3_1:+12616701 None:intergenic
TCTGAAAATGCTTCGTTTAT+GGG 0.277428 3_1:-12618758 Msa0349220:CDS
AGGAGGGCAAAATTGGAATT+TGG 0.288582 3_1:+12622579 None:intergenic
TTCAAACCTCTGGCCGCAAC+AGG 0.311866 3_1:-12618971 Msa0349220:CDS
AAACCAGCATTTGCATTAAC+AGG 0.320884 3_1:-12621129 Msa0349220:CDS
TCCGTTGCTAGAAAGTTTCT+TGG 0.324598 3_1:-12616969 Msa0349220:CDS
CTAAACTCTGATTCTCTATC+TGG 0.334187 3_1:-12622691 Msa0349220:five_prime_UTR
ATTTAGTTATATATTTATAC+AGG 0.341416 3_1:-12616653 Msa0349220:three_prime_UTR
CTGTAATCTCTTAGCTCATT+TGG 0.346789 3_1:+12617434 None:intergenic
TTCAGCTTATGATAGCCTTT+AGG 0.356772 3_1:+12618682 None:intergenic
TATAAATAAACTGTAATATC+AGG 0.357191 3_1:+12616514 None:intergenic
GACTCCATCCTTGCTCCAAC+TGG 0.358917 3_1:+12616997 None:intergenic
ATAATCTGAAGCATGCATTC+TGG 0.376727 3_1:-12617878 Msa0349220:CDS
TATATAAGTGACAGCATTGC+AGG 0.391828 3_1:+12618790 None:intergenic
TGTAGAGAAGAAAGAGGTTG+TGG 0.396330 3_1:+12622606 None:intergenic
GATCATTTGTAACGAGGATA+AGG 0.397028 3_1:+12617456 None:intergenic
ATTAACAGGCATGTTGATTT+GGG 0.398786 3_1:-12621115 Msa0349220:CDS
AAGAACCAGTGCAAATCTAT+TGG 0.400814 3_1:-12618941 Msa0349220:CDS
TTTGTTCCTGGTACTTCGTC+AGG 0.412483 3_1:+12617366 None:intergenic
ACTGTAAGAACACTGGTAAT+AGG 0.431966 3_1:+12616611 None:intergenic
AAATGAAAGCTAATAGTTCA+TGG 0.433105 3_1:-12616865 Msa0349220:three_prime_UTR
GATTAACTATTTCAAACCTC+TGG 0.434289 3_1:-12618981 Msa0349220:CDS
GACATGAGGCGTTCATTGTC+TGG 0.437990 3_1:-12617597 Msa0349220:intron
ATAGACTGGATCGAGGTGTT+TGG 0.438089 3_1:-12617638 Msa0349220:CDS
TTTGTATGATCATGATGAAA+AGG 0.438635 3_1:+12617855 None:intergenic
AAGATTAGATGATCTTTCAA+TGG 0.440103 3_1:-12621008 Msa0349220:CDS
CTGATGTCATTATGTGTGCT+TGG 0.441375 3_1:+12618644 None:intergenic
ATCCTTGCTCCAACTGGATG+AGG 0.450312 3_1:+12617003 None:intergenic
CTTGAAACGAAGGCATCAAC+AGG 0.453702 3_1:+12621028 None:intergenic
AGCTGCAGAAGATGATTCTC+TGG 0.462249 3_1:-12621074 Msa0349220:CDS
CGTATAATCCACAATGATAG+AGG 0.464560 3_1:+12617405 None:intergenic
GTTTGGACCACTGTGCGCTT+TGG 0.474107 3_1:-12617621 Msa0349220:CDS
AATGACATCAGGGAATCTAT+TGG 0.474691 3_1:-12618632 Msa0349220:CDS
GGAGAATGTAGAGAAGAAAG+AGG 0.475780 3_1:+12622600 None:intergenic
TGGCTCCAATAGATTTGCAC+TGG 0.477372 3_1:+12618936 None:intergenic
CAAGCACACATAATGACATC+AGG 0.478012 3_1:-12618643 Msa0349220:CDS
TTATGAATGAGCAGGAAGCC+AGG 0.491755 3_1:-12621198 Msa0349220:intron
AAAATATGTGATTAACAACT+TGG 0.493497 3_1:-12616486 Msa0349220:three_prime_UTR
GTAGAGAAGAAAGAGGTTGT+GGG 0.496524 3_1:+12622607 None:intergenic
CTGAAAATGCTTCGTTTATG+GGG 0.500173 3_1:-12618757 Msa0349220:CDS
ATCAGGTAAAGGCGTAAAGC+TGG 0.500633 3_1:+12616531 None:intergenic
TTTCTGCATCAAAATACAAA+AGG 0.506806 3_1:+12618734 None:intergenic
GACGAAGTACCAGGAACAAA+AGG 0.506839 3_1:-12617363 Msa0349220:intron
CTGTGAACAGAATCCTTCCC+TGG 0.507563 3_1:+12621180 None:intergenic
TCCCCTCGTGTGATATGTCA+TGG 0.514884 3_1:-12622541 Msa0349220:CDS
CTCTCAAATTGCTTCAGCTA+AGG 0.519443 3_1:-12617670 Msa0349220:CDS
TCATCCAGTTGGAGCAAGGA+TGG 0.519551 3_1:-12617001 Msa0349220:CDS
TGAAACCCTGTTGCGGCCAG+AGG 0.520340 3_1:+12618965 None:intergenic
ATCAGGGAATCTATTGGTTG+AGG 0.531383 3_1:-12618626 Msa0349220:intron
TAAACTGTAATATCAGGTAA+AGG 0.534543 3_1:+12616520 None:intergenic
TTCTCTGGTATCACATTCAT+CGG 0.538397 3_1:-12621059 Msa0349220:CDS
ACAATACCTGACGAAGTACC+AGG 0.539219 3_1:-12617372 Msa0349220:CDS
TAAGGCTGCTCAACATAGAC+TGG 0.539706 3_1:-12617652 Msa0349220:CDS
AGCATTCTCCTCTATCATTG+TGG 0.542918 3_1:-12617413 Msa0349220:CDS
ACCAAGAAACTTTCTAGCAA+CGG 0.543432 3_1:+12616968 None:intergenic
TCGGGCGATGAATCATATGA+AGG 0.547656 3_1:+12620965 None:intergenic
TATATTTATACAGGGAGCAA+AGG 0.552828 3_1:-12616644 Msa0349220:three_prime_UTR
GGGGATGAATAAGAAAATGA+AGG 0.553136 3_1:+12622559 None:intergenic
ATCATCTAATCTTGAAACGA+AGG 0.557034 3_1:+12621018 None:intergenic
AGAATCAGAGTTTAGTGATG+AGG 0.557069 3_1:+12622699 None:intergenic
ACGAAGGCATCAACAGGAAG+TGG 0.560991 3_1:+12621034 None:intergenic
TTGGTAATAACTCTGATCCA+TGG 0.562557 3_1:-12616950 Msa0349220:CDS
CGGGCGATGAATCATATGAA+GGG 0.568024 3_1:+12620966 None:intergenic
ATGCCTGTTAATGCAAATGC+TGG 0.568226 3_1:+12621126 None:intergenic
AGTTGCCGCGTGTTGAACGT+TGG 0.568265 3_1:+12622513 None:intergenic
AGAATTTACATGAACATCAC+AGG 0.581748 3_1:+12616557 None:intergenic
AACCTCATCCAGTTGGAGCA+AGG 0.588007 3_1:-12617005 Msa0349220:CDS
CATTTGGATCATTTGTAACG+AGG 0.590534 3_1:+12617450 None:intergenic
ATGAATAAGAAAATGAAGGA+GGG 0.597273 3_1:+12622563 None:intergenic
GCGATTGAACCTCATCCAGT+TGG 0.599688 3_1:-12617012 Msa0349220:CDS
TTTAGTTATATATTTATACA+GGG 0.600217 3_1:-12616652 Msa0349220:three_prime_UTR
TCAAACCTCTGGCCGCAACA+GGG 0.600873 3_1:-12618970 Msa0349220:CDS
GATGAATAAGAAAATGAAGG+AGG 0.601768 3_1:+12622562 None:intergenic
TATGAATGAGCAGGAAGCCA+GGG 0.605007 3_1:-12621197 Msa0349220:intron
CTATCATAAGCTGAAAAGCA+AGG 0.606589 3_1:-12618674 Msa0349220:CDS
GAGTGAAGATAGAGTGCTTG+TGG 0.606600 3_1:+12618916 None:intergenic
TCGCGTTATTAGTTTATCGA+CGG 0.614613 3_1:+12617031 None:intergenic
TGTCGCGATTGAAACGAAAG+AGG 0.617725 3_1:+12616922 None:intergenic
GGGCGATGAATCATATGAAG+GGG 0.623869 3_1:+12620967 None:intergenic
ATCAGACTCTGAAAGTGACA+TGG 0.630097 3_1:-12617066 Msa0349220:CDS
TTATTATACTGTAAGAACAC+TGG 0.638101 3_1:+12616604 None:intergenic
AATGAGCAGGAAGCCAGGGA+AGG 0.640830 3_1:-12621193 Msa0349220:intron
CTGTGCGCTTTGGCGACATG+AGG 0.642640 3_1:-12617611 Msa0349220:CDS
GTTCTTCTGAAACCCTGTTG+CGG 0.644145 3_1:+12618958 None:intergenic
CATCATGCAAGAAGAACTTG+AGG 0.646582 3_1:+12622488 None:intergenic
AGAAACTTTCTAGCAACGGA+CGG 0.646590 3_1:+12616972 None:intergenic
TCATATGAAGGGGTGTAGTG+AGG 0.651341 3_1:+12620977 None:intergenic
CTATCATTGTGGATTATACG+AGG 0.661047 3_1:-12617402 Msa0349220:CDS
CCTCCATGACATATCACACG+AGG 0.661063 3_1:+12622538 None:intergenic
ACAAGCACTCTATCTTCACT+CGG 0.662211 3_1:-12618914 Msa0349220:intron
AGGCTCCAACGTTCAACACG+CGG 0.663386 3_1:-12622518 Msa0349220:CDS
AAACGAAAGAGGAACTACCA+TGG 0.668179 3_1:+12616933 None:intergenic
AAGCACACATAATGACATCA+GGG 0.674877 3_1:-12618642 Msa0349220:CDS
ATAGATACAGTAAGTAACAA+CGG 0.684169 3_1:-12616679 Msa0349220:three_prime_UTR
CTCCATGACATATCACACGA+GGG 0.687060 3_1:+12622539 None:intergenic
TCCATGACATATCACACGAG+GGG 0.694967 3_1:+12622540 None:intergenic
CATGTCGCCAAAGCGCACAG+TGG 0.713769 3_1:+12617614 None:intergenic
CCTCGTGTGATATGTCATGG+AGG 0.732138 3_1:-12622538 Msa0349220:CDS
GCTCAACATAGACTGGATCG+AGG 0.749948 3_1:-12617645 Msa0349220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGTTTTATTTGTTTAATT+TGG - chr3_1:12616782-12616801 Msa0349220:three_prime_UTR 10.0%
!!! AATCACATTTTAATTATTAT+CGG + chr3_1:12618883-12618902 None:intergenic 10.0%
!! AATTGTAACTATTATTAATT+AGG - chr3_1:12621053-12621072 Msa0349220:CDS 10.0%
!! CATTAAAATAAATAGAAAAT+AGG + chr3_1:12621416-12621435 None:intergenic 10.0%
!! ATTTAGTTATATATTTATAC+AGG - chr3_1:12622501-12622520 Msa0349220:CDS 10.0%
!! TTTAGTTATATATTTATACA+GGG - chr3_1:12622502-12622521 Msa0349220:CDS 10.0%
!!! TCAAATTTTAAGATTGTTTT+TGG - chr3_1:12616751-12616770 Msa0349220:three_prime_UTR 15.0%
!!! TCATTTTCTCAAATTATTAT+CGG + chr3_1:12616932-12616951 None:intergenic 15.0%
!! AGATTAGATTTATTGAATAA+AGG - chr3_1:12617316-12617335 Msa0349220:intron 15.0%
!! GATTAGATTTATTGAATAAA+GGG - chr3_1:12617317-12617336 Msa0349220:intron 15.0%
!! ATAGTATAATGTATTTAAGA+TGG - chr3_1:12617349-12617368 Msa0349220:intron 15.0%
!! TTTAAACGAAAAATGAAATA+AGG + chr3_1:12617464-12617483 None:intergenic 15.0%
!! ATACTCATAAATTTAATATG+TGG + chr3_1:12620275-12620294 None:intergenic 15.0%
!!! ATACAAAAACCTTATTTTTA+AGG - chr3_1:12621315-12621334 Msa0349220:intron 15.0%
!!! TACAAAAACCTTATTTTTAA+GGG - chr3_1:12621316-12621335 Msa0349220:intron 15.0%
!! AAATAAATAGAAAATAGGAT+AGG + chr3_1:12621411-12621430 None:intergenic 15.0%
!! TATAAATAAACTGTAATATC+AGG + chr3_1:12622643-12622662 None:intergenic 15.0%
!! TTGGAATATATTGAAAAAAA+TGG - chr3_1:12622687-12622706 Msa0349220:five_prime_UTR 15.0%
!! AAATGAATTCAAATCTTTGT+AGG + chr3_1:12617040-12617059 None:intergenic 20.0%
!!! GAAATTTACAAGTTTTCATT+TGG - chr3_1:12617880-12617899 Msa0349220:CDS 20.0%
!!! AATAATCTTAATTTGTTGAG+TGG - chr3_1:12617928-12617947 Msa0349220:intron 20.0%
!!! TATCATCTTAAATTTAGGTT+GGG + chr3_1:12618404-12618423 None:intergenic 20.0%
!! ATATCATCTTAAATTTAGGT+TGG + chr3_1:12618405-12618424 None:intergenic 20.0%
!! TCTCATATCATCTTAAATTT+AGG + chr3_1:12618409-12618428 None:intergenic 20.0%
!! AGTCAAATGTCTTAAAATTT+GGG + chr3_1:12618553-12618572 None:intergenic 20.0%
!! TATTAAGTATTAACCACAAA+AGG - chr3_1:12618583-12618602 Msa0349220:intron 20.0%
!! ATTGACCTTGTTAAAATAAT+AGG - chr3_1:12619442-12619461 Msa0349220:intron 20.0%
!! TTGACCTTGTTAAAATAATA+GGG - chr3_1:12619443-12619462 Msa0349220:intron 20.0%
!!! AAAACCCTATTATTTTAACA+AGG + chr3_1:12619450-12619469 None:intergenic 20.0%
!!! ACATACCAAAATAAAGTTTT+GGG + chr3_1:12619801-12619820 None:intergenic 20.0%
!!! TACATACCAAAATAAAGTTT+TGG + chr3_1:12619802-12619821 None:intergenic 20.0%
!!! ATTTTGGTATGTAGTTAATT+AGG - chr3_1:12619809-12619828 Msa0349220:intron 20.0%
!! TCTTCTAATTAATAAAGTCT+TGG - chr3_1:12619926-12619945 Msa0349220:intron 20.0%
!! ATCTATTTACAAATTACATG+TGG + chr3_1:12620156-12620175 None:intergenic 20.0%
!!! GATATTTTTAATGTTCCTAA+AGG - chr3_1:12620457-12620476 Msa0349220:intron 20.0%
!! GAAAAAATGTACACATAATT+TGG + chr3_1:12620615-12620634 None:intergenic 20.0%
!! TTATCCTAATTAATAAACCA+AGG + chr3_1:12621035-12621054 None:intergenic 20.0%
!! AAAACTAAAACAGCTTAATA+TGG + chr3_1:12621216-12621235 None:intergenic 20.0%
!!! TGATATATTTTTTCCAGATT+TGG - chr3_1:12621843-12621862 Msa0349220:intron 20.0%
!! AAAATATGTGATTAACAACT+TGG - chr3_1:12622668-12622687 Msa0349220:five_prime_UTR 20.0%
! ATGAATAAGAAAATGAAGGA+GGG + chr3_1:12616594-12616613 None:intergenic 25.0%
! AATTCATGTTAAATGAAGCT+TGG - chr3_1:12616817-12616836 Msa0349220:three_prime_UTR 25.0%
!! TATAATTTGTCATCCTGTAA+TGG - chr3_1:12616847-12616866 Msa0349220:three_prime_UTR 25.0%
!!! TGATAGTATGTTACTTTGTT+TGG - chr3_1:12617372-12617391 Msa0349220:CDS 25.0%
! TACAGAAAATCAAGCAAATT+AGG + chr3_1:12617415-12617434 None:intergenic 25.0%
! TCAAAATGTTTGATTCATGA+AGG - chr3_1:12617496-12617515 Msa0349220:intron 25.0%
! TATGGTACATGTTTGAAAAA+TGG - chr3_1:12617541-12617560 Msa0349220:intron 25.0%
!! TGTTTGAAAAATGGACTTAA+TGG - chr3_1:12617550-12617569 Msa0349220:intron 25.0%
!! AAACAAGTCTTTTCTCTATT+TGG + chr3_1:12617587-12617606 None:intergenic 25.0%
!! TTGTTTGTTGATGTTATTGA+TGG - chr3_1:12617601-12617620 Msa0349220:CDS 25.0%
! TTGATATTGAGGAAAAATGT+GGG - chr3_1:12617698-12617717 Msa0349220:intron 25.0%
! AAGATTAGATGATCTTTCAA+TGG - chr3_1:12618146-12618165 Msa0349220:intron 25.0%
!! AAGATTTTTGTATGTTCACA+AGG - chr3_1:12618233-12618252 Msa0349220:intron 25.0%
!!! TCATACAAAATTGACTTGTA+AGG + chr3_1:12618371-12618390 None:intergenic 25.0%
!! CAATTTTGTATGATTGAGAT+TGG - chr3_1:12618378-12618397 Msa0349220:intron 25.0%
! CAGTCAAATGTCTTAAAATT+TGG + chr3_1:12618554-12618573 None:intergenic 25.0%
!!! GAATTCTGAAGCATTATTTT+AGG - chr3_1:12618611-12618630 Msa0349220:intron 25.0%
! CATTGAAAGATCACAATATA+AGG + chr3_1:12619023-12619042 None:intergenic 25.0%
! TACCTATAATCTTATCAACT+TGG + chr3_1:12619046-12619065 None:intergenic 25.0%
! AGAATTGATATGATTTGAAG+AGG + chr3_1:12619209-12619228 None:intergenic 25.0%
!!! AAATAATAGGGTTTTAGATG+TGG - chr3_1:12619455-12619474 Msa0349220:intron 25.0%
! AGGAAAAATAGATTGAATTG+TGG - chr3_1:12619485-12619504 Msa0349220:intron 25.0%
! AACTTGACATTAAGAACATT+AGG + chr3_1:12619611-12619630 None:intergenic 25.0%
!!! AGTATAGTTTTGTGTTTGAT+AGG + chr3_1:12619696-12619715 None:intergenic 25.0%
! CAATTAGAAGTAGTTCATAA+CGG - chr3_1:12619758-12619777 Msa0349220:intron 25.0%
! TAAATTTATGAGTATGCAAG+TGG - chr3_1:12620280-12620299 Msa0349220:intron 25.0%
! TTTCTGCATCAAAATACAAA+AGG + chr3_1:12620423-12620442 None:intergenic 25.0%
!!! GTGTACATTTTTTCTAGTTT+TGG - chr3_1:12620621-12620640 Msa0349220:intron 25.0%
! TTGAGTGACTCTTAAAATTT+GGG - chr3_1:12620701-12620720 Msa0349220:intron 25.0%
! AAATTATTGTGACTTCTATG+TGG + chr3_1:12620970-12620989 None:intergenic 25.0%
! TTATATGAGAATATTCCAAG+AGG - chr3_1:12621148-12621167 Msa0349220:CDS 25.0%
! GAATATATTATGAAACTCAG+AGG + chr3_1:12621191-12621210 None:intergenic 25.0%
! TTTGTATGATCATGATGAAA+AGG + chr3_1:12621302-12621321 None:intergenic 25.0%
! ATTGTCTTAAAGTTTGTCAA+CGG - chr3_1:12621455-12621474 Msa0349220:intron 25.0%
! AATATCAGAAAGTTTGACAA+AGG + chr3_1:12621632-12621651 None:intergenic 25.0%
! ATATCATTCATGCATTGTAT+AGG + chr3_1:12621829-12621848 None:intergenic 25.0%
! TTCAGTTTATTTGGAAAGAA+GGG + chr3_1:12622015-12622034 None:intergenic 25.0%
! ATTCAGTTTATTTGGAAAGA+AGG + chr3_1:12622016-12622035 None:intergenic 25.0%
! CACATAACATTCAGTTTATT+TGG + chr3_1:12622024-12622043 None:intergenic 25.0%
! AAATGAAAGCTAATAGTTCA+TGG - chr3_1:12622289-12622308 Msa0349220:intron 25.0%
! ATAGATACAGTAAGTAACAA+CGG - chr3_1:12622475-12622494 Msa0349220:CDS 25.0%
! TTATTATACTGTAAGAACAC+TGG + chr3_1:12622553-12622572 None:intergenic 25.0%
! TAAACTGTAATATCAGGTAA+AGG + chr3_1:12622637-12622656 None:intergenic 25.0%
GATGAATAAGAAAATGAAGG+AGG + chr3_1:12616595-12616614 None:intergenic 30.0%
!!! AAGACATGAGTTTTTTACTC+TGG + chr3_1:12616725-12616744 None:intergenic 30.0%
AAACAAAAATCCACCATTAC+AGG + chr3_1:12616863-12616882 None:intergenic 30.0%
TTTGATACATCTCAAAACAC+AGG - chr3_1:12616888-12616907 Msa0349220:three_prime_UTR 30.0%
TTGATACATCTCAAAACACA+GGG - chr3_1:12616889-12616908 Msa0349220:three_prime_UTR 30.0%
! ATTTGCTTGATTTTCTGTAG+TGG - chr3_1:12617416-12617435 Msa0349220:CDS 30.0%
! TTTGCTTGATTTTCTGTAGT+GGG - chr3_1:12617417-12617436 Msa0349220:CDS 30.0%
! GTGTTTACTCTGATTAGTTA+TGG - chr3_1:12617523-12617542 Msa0349220:intron 30.0%
GTCGTGTTAATTACAATCAA+CGG - chr3_1:12617636-12617655 Msa0349220:CDS 30.0%
!! ACGGTTCTAAATTGTAATTG+AGG - chr3_1:12617655-12617674 Msa0349220:CDS 30.0%
CTAAATTGTAATTGAGGTTG+AGG - chr3_1:12617661-12617680 Msa0349220:CDS 30.0%
CTTGATATTGAGGAAAAATG+TGG - chr3_1:12617697-12617716 Msa0349220:intron 30.0%
!! CCTCTAAAACTGTTATATTG+CGG - chr3_1:12617770-12617789 Msa0349220:intron 30.0%
!! GTGTGAATAGTTCTAAATTG+CGG + chr3_1:12617815-12617834 None:intergenic 30.0%
!! ATTAACAGGCATGTTGATTT+GGG - chr3_1:12618039-12618058 Msa0349220:intron 30.0%
ATCATCTAATCTTGAAACGA+AGG + chr3_1:12618139-12618158 None:intergenic 30.0%
! TATGCTCTCTAAAAACTTCT+CGG + chr3_1:12618211-12618230 None:intergenic 30.0%
! CAGAATTCAAAATCCTTTTG+TGG + chr3_1:12618599-12618618 None:intergenic 30.0%
GAAACAATTAGAGGAACATA+TGG + chr3_1:12618654-12618673 None:intergenic 30.0%
AGGCTCAAATAGTAACAATT+AGG - chr3_1:12618677-12618696 Msa0349220:CDS 30.0%
GTAACAATTAGGTTCACTTT+AGG - chr3_1:12618688-12618707 Msa0349220:CDS 30.0%
!! TGCCAAGTTGATAAGATTAT+AGG - chr3_1:12619041-12619060 Msa0349220:intron 30.0%
AAACTCTCATAATGCCAAAA+AGG - chr3_1:12619115-12619134 Msa0349220:intron 30.0%
AACTCTCATAATGCCAAAAA+GGG - chr3_1:12619116-12619135 Msa0349220:intron 30.0%
TGATATGATTTGAAGAGGTA+TGG + chr3_1:12619204-12619223 None:intergenic 30.0%
AATACCATTCTTATCACTTC+AGG - chr3_1:12619355-12619374 Msa0349220:intron 30.0%
AGGTTTAACAATATTGAGGT+GGG + chr3_1:12619577-12619596 None:intergenic 30.0%
! TCTGAGGTTTAACAATATTG+AGG + chr3_1:12619581-12619600 None:intergenic 30.0%
GTTCTTAATGTCAAGTTAGA+AGG - chr3_1:12619614-12619633 Msa0349220:intron 30.0%
TAATGTATGTTGCATGTTCT+AGG - chr3_1:12619662-12619681 Msa0349220:intron 30.0%
GAACTACTTCTAATTGAGTA+GGG + chr3_1:12619754-12619773 None:intergenic 30.0%
TGAACTACTTCTAATTGAGT+AGG + chr3_1:12619755-12619774 None:intergenic 30.0%
! TTAATAAAGTCTTGGTGACA+TGG - chr3_1:12619934-12619953 Msa0349220:intron 30.0%
TTACAAACACGTATGTAATG+TGG - chr3_1:12620051-12620070 Msa0349220:intron 30.0%
GATTAACTATTTCAAACCTC+TGG - chr3_1:12620173-12620192 Msa0349220:intron 30.0%
TTTACTTTAATGAATCGAGC+AGG - chr3_1:12620318-12620337 Msa0349220:intron 30.0%
! TTCTGAAAATGCTTCGTTTA+TGG - chr3_1:12620395-12620414 Msa0349220:intron 30.0%
TCTGAAAATGCTTCGTTTAT+GGG - chr3_1:12620396-12620415 Msa0349220:intron 30.0%
GTTGAGTGACTCTTAAAATT+TGG - chr3_1:12620700-12620719 Msa0349220:intron 30.0%
ATAACTCAATCCTACAAAAC+CGG - chr3_1:12620729-12620748 Msa0349220:intron 30.0%
!! ATCTTATAAACCGGTTTTGT+AGG + chr3_1:12620742-12620761 None:intergenic 30.0%
! AAAACCGGTTTATAAGATGA+GGG - chr3_1:12620744-12620763 Msa0349220:intron 30.0%
GTCTTGCCATCTTAAAAATT+GGG - chr3_1:12620848-12620867 Msa0349220:intron 30.0%
AGAAGTCACAATAATTTACG+TGG - chr3_1:12620973-12620992 Msa0349220:CDS 30.0%
TCACAATAATTTACGTGGTT+CGG - chr3_1:12620978-12620997 Msa0349220:CDS 30.0%
TGCACCTTGGTTTATTAATT+AGG - chr3_1:12621028-12621047 Msa0349220:CDS 30.0%
TGATAACATTGTTATCCTCT+TGG + chr3_1:12621166-12621185 None:intergenic 30.0%
TCGGATGAATCAAATTACAT+AGG + chr3_1:12621937-12621956 None:intergenic 30.0%
ATGAGTTCTGCAAAAATGAA+TGG + chr3_1:12622049-12622068 None:intergenic 30.0%
! ACAACATCAACGAAGAATTT+TGG - chr3_1:12622252-12622271 Msa0349220:intron 30.0%
CAATCTTACATGTAAAAACG+AGG - chr3_1:12622402-12622421 Msa0349220:intron 30.0%
! GAACTAGATTTTCCAACAAA+TGG - chr3_1:12622441-12622460 Msa0349220:intron 30.0%
TATATTTATACAGGGAGCAA+AGG - chr3_1:12622510-12622529 Msa0349220:CDS 30.0%
AGAATTTACATGAACATCAC+AGG + chr3_1:12622600-12622619 None:intergenic 30.0%
AGAATCAGAGTTTAGTGATG+AGG + chr3_1:12616458-12616477 None:intergenic 35.0%
CTAAACTCTGATTCTCTATC+TGG - chr3_1:12616463-12616482 Msa0349220:three_prime_UTR 35.0%
AAAATGAAGGAGGGCAAAAT+TGG + chr3_1:12616585-12616604 None:intergenic 35.0%
GGGGATGAATAAGAAAATGA+AGG + chr3_1:12616598-12616617 None:intergenic 35.0%
AATTTGTCATCCTGTAATGG+TGG - chr3_1:12616850-12616869 Msa0349220:three_prime_UTR 35.0%
ATCATATCATACGTCAGAGT+TGG - chr3_1:12616966-12616985 Msa0349220:CDS 35.0%
ACACCTTTGATCATAAGTGT+AGG - chr3_1:12617013-12617032 Msa0349220:CDS 35.0%
TGTATCAGTGTTTCATAGCA+TGG + chr3_1:12617184-12617203 None:intergenic 35.0%
! AGTGATTGAATGTAGCTTTG+TGG - chr3_1:12617240-12617259 Msa0349220:intron 35.0%
! CTTGAGATTAAAGGTGTATC+TGG + chr3_1:12617282-12617301 None:intergenic 35.0%
TTCTCTATTTGGATCACTTG+AGG + chr3_1:12617576-12617595 None:intergenic 35.0%
TGTCGCAAATCTTGATATTG+AGG - chr3_1:12617687-12617706 Msa0349220:intron 35.0%
AGGAAAAATGTGGGCAATTA+TGG - chr3_1:12617707-12617726 Msa0349220:intron 35.0%
!! CCGCAATATAACAGTTTTAG+AGG + chr3_1:12617773-12617792 None:intergenic 35.0%
!! TTCATTTGGTTCTGAACTTC+AGG - chr3_1:12617894-12617913 Msa0349220:intron 35.0%
! TGGTTGATTTATGAATGAGC+AGG - chr3_1:12617948-12617967 Msa0349220:intron 35.0%
AAACCAGCATTTGCATTAAC+AGG - chr3_1:12618025-12618044 Msa0349220:intron 35.0%
! CATTAACAGGCATGTTGATT+TGG - chr3_1:12618038-12618057 Msa0349220:intron 35.0%
TTCTCTGGTATCACATTCAT+CGG - chr3_1:12618095-12618114 Msa0349220:intron 35.0%
! ATGCTCTCTAAAAACTTCTC+GGG + chr3_1:12618210-12618229 None:intergenic 35.0%
AATGAAACAAGCATACAGCT+AGG + chr3_1:12618280-12618299 None:intergenic 35.0%
! CCGTTTGTAACTCATTTTCA+GGG + chr3_1:12618335-12618354 None:intergenic 35.0%
CCCTGAAAATGAGTTACAAA+CGG - chr3_1:12618332-12618351 Msa0349220:intron 35.0%
CCTGAAAATGAGTTACAAAC+GGG - chr3_1:12618333-12618352 Msa0349220:intron 35.0%
AGAACCTATCCAAGATGTAT+TGG - chr3_1:12618426-12618445 Msa0349220:intron 35.0%
GAACCTATCCAAGATGTATT+GGG - chr3_1:12618427-12618446 Msa0349220:intron 35.0%
AACCTATCCAAGATGTATTG+GGG - chr3_1:12618428-12618447 Msa0349220:intron 35.0%
! GTTCCTCTAATTGTTTCTTG+AGG - chr3_1:12618657-12618676 Msa0349220:CDS 35.0%
ACACCTTCAATCAGAAGTTT+CGG - chr3_1:12618956-12618975 Msa0349220:CDS 35.0%
ACAATATAAGGAGACTAGGA+TGG + chr3_1:12619011-12619030 None:intergenic 35.0%
GATCACAATATAAGGAGACT+AGG + chr3_1:12619015-12619034 None:intergenic 35.0%
!! TATGAGAGTTTTGTGCATAG+AGG + chr3_1:12619106-12619125 None:intergenic 35.0%
TCATAATGCCAAAAAGGGAA+AGG - chr3_1:12619121-12619140 Msa0349220:intron 35.0%
! TCATTTTGCCTTTCCCTTTT+TGG + chr3_1:12619132-12619151 None:intergenic 35.0%
AAAAGGGAAAGGCAAAATGA+AGG - chr3_1:12619132-12619151 Msa0349220:intron 35.0%
GAAACAAGTGAGTGAGAAAT+AGG + chr3_1:12619237-12619256 None:intergenic 35.0%
TGTTTGCCAAAGTTTACGTT+AGG + chr3_1:12619265-12619284 None:intergenic 35.0%
TTCTCCTGAAGTGATAAGAA+TGG + chr3_1:12619362-12619381 None:intergenic 35.0%
TTCTTATCACTTCAGGAGAA+AGG - chr3_1:12619362-12619381 Msa0349220:intron 35.0%
!!! TAATAGGGTTTTAGATGTGG+AGG - chr3_1:12619458-12619477 Msa0349220:intron 35.0%
!!! AATAGGGTTTTAGATGTGGA+GGG - chr3_1:12619459-12619478 Msa0349220:intron 35.0%
!! GAAAAGGTTCTTTTGGAAGA+TGG - chr3_1:12619537-12619556 Msa0349220:intron 35.0%
GAGGTTTAACAATATTGAGG+TGG + chr3_1:12619578-12619597 None:intergenic 35.0%
AACATTAGGTATAGACTCTG+AGG + chr3_1:12619597-12619616 None:intergenic 35.0%
!! AACTCTCCACTTTTGACAAA+TGG - chr3_1:12619721-12619740 Msa0349220:intron 35.0%
TCATCTCCATTTGTCAAAAG+TGG + chr3_1:12619730-12619749 None:intergenic 35.0%
!! GTTGGCCCAAAACTTTATTT+TGG - chr3_1:12619793-12619812 Msa0349220:intron 35.0%
! AAGTAATGCAGAGCAGATTT+TGG - chr3_1:12619846-12619865 Msa0349220:intron 35.0%
CAAAGCATAATCAATGCACT+AGG + chr3_1:12619892-12619911 None:intergenic 35.0%
! AAGATACGAGTAGTAGCTTT+TGG - chr3_1:12619986-12620005 Msa0349220:intron 35.0%
AAGAACCAGTGCAAATCTAT+TGG - chr3_1:12620213-12620232 Msa0349220:intron 35.0%
TATATAAGTGACAGCATTGC+AGG + chr3_1:12620367-12620386 None:intergenic 35.0%
CTGAAAATGCTTCGTTTATG+GGG - chr3_1:12620397-12620416 Msa0349220:intron 35.0%
TTCAGCTTATGATAGCCTTT+AGG + chr3_1:12620475-12620494 None:intergenic 35.0%
CTATCATAAGCTGAAAAGCA+AGG - chr3_1:12620480-12620499 Msa0349220:intron 35.0%
AAGCACACATAATGACATCA+GGG - chr3_1:12620512-12620531 Msa0349220:intron 35.0%
AATGACATCAGGGAATCTAT+TGG - chr3_1:12620522-12620541 Msa0349220:intron 35.0%
CTTCTTTCATTTCCACTATC+TGG - chr3_1:12620570-12620589 Msa0349220:intron 35.0%
GGGAGCAATTATACTTCTTA+TGG + chr3_1:12620666-12620685 None:intergenic 35.0%
ACTCAACAACAATGCTTGAT+CGG + chr3_1:12620687-12620706 None:intergenic 35.0%
AGTGACTCTTAAAATTTGGG+TGG - chr3_1:12620704-12620723 Msa0349220:intron 35.0%
! CAAAACCGGTTTATAAGATG+AGG - chr3_1:12620743-12620762 Msa0349220:intron 35.0%
GGTCTTGCCATCTTAAAAAT+TGG - chr3_1:12620847-12620866 Msa0349220:intron 35.0%
!! GCTCAACCCAATTTTTAAGA+TGG + chr3_1:12620857-12620876 None:intergenic 35.0%
AAAACCGACTGGTAAGATAA+GGG - chr3_1:12620892-12620911 Msa0349220:intron 35.0%
AAGATCCTAGGTGTGAAATA+CGG + chr3_1:12620932-12620951 None:intergenic 35.0%
! TTGTTTTCCACTAAGATCCT+AGG + chr3_1:12620944-12620963 None:intergenic 35.0%
CACAATAATTTACGTGGTTC+GGG - chr3_1:12620979-12620998 Msa0349220:CDS 35.0%
CAATTTACTTACAAGCTGTG+AGG + chr3_1:12621125-12621144 None:intergenic 35.0%
AGACTTAACATGAGTGCTAA+AGG + chr3_1:12621239-12621258 None:intergenic 35.0%
! ATAATCTGAAGCATGCATTC+TGG - chr3_1:12621276-12621295 Msa0349220:intron 35.0%
ATGTGCTGCCCTTAAAAATA+AGG + chr3_1:12621327-12621346 None:intergenic 35.0%
! GTTGACAGATCTGATTTTGT+TGG - chr3_1:12621359-12621378 Msa0349220:intron 35.0%
! GATCTGATTTTGTTGGAGAA+AGG - chr3_1:12621366-12621385 Msa0349220:intron 35.0%
! ACAGTATTGAGAAAGAAGAG+AGG + chr3_1:12621605-12621624 None:intergenic 35.0%
GATCATTTGTAACGAGGATA+AGG + chr3_1:12621701-12621720 None:intergenic 35.0%
CATTTGGATCATTTGTAACG+AGG + chr3_1:12621707-12621726 None:intergenic 35.0%
CTGTAATCTCTTAGCTCATT+TGG + chr3_1:12621723-12621742 None:intergenic 35.0%
CGTATAATCCACAATGATAG+AGG + chr3_1:12621752-12621771 None:intergenic 35.0%
! CTATCATTGTGGATTATACG+AGG - chr3_1:12621752-12621771 Msa0349220:intron 35.0%
! GTTATAGTACCTTTTGTTCC+TGG + chr3_1:12621803-12621822 None:intergenic 35.0%
! GGATTCGCTTTAAACAATCT+TGG + chr3_1:12621916-12621935 None:intergenic 35.0%
! TCGCGTTATTAGTTTATCGA+CGG + chr3_1:12622126-12622145 None:intergenic 35.0%
! ACCAAGAAACTTTCTAGCAA+CGG + chr3_1:12622189-12622208 None:intergenic 35.0%
! TTGGTAATAACTCTGATCCA+TGG - chr3_1:12622204-12622223 Msa0349220:intron 35.0%
!! CATCAACGAAGAATTTTGGT+CGG - chr3_1:12622256-12622275 Msa0349220:intron 35.0%
TCTGTTGTCTTTCCATTTGT+TGG + chr3_1:12622456-12622475 None:intergenic 35.0%
ACTGTAAGAACACTGGTAAT+AGG + chr3_1:12622546-12622565 None:intergenic 35.0%
GAAAAAAATGGAACCGTGAA+AGG - chr3_1:12622699-12622718 Msa0349220:five_prime_UTR 35.0%
GTAGAGAAGAAAGAGGTTGT+GGG + chr3_1:12616550-12616569 None:intergenic 40.0%
TGTAGAGAAGAAAGAGGTTG+TGG + chr3_1:12616551-12616570 None:intergenic 40.0%
GGAGAATGTAGAGAAGAAAG+AGG + chr3_1:12616557-12616576 None:intergenic 40.0%
AGGAGGGCAAAATTGGAATT+TGG + chr3_1:12616578-12616597 None:intergenic 40.0%
CATCATGCAAGAAGAACTTG+AGG + chr3_1:12616669-12616688 None:intergenic 40.0%
GGACCTACACTTATGATCAA+AGG + chr3_1:12617019-12617038 None:intergenic 40.0%
AAATCTAATCTCTGCAGCAC+TGG + chr3_1:12617307-12617326 None:intergenic 40.0%
!! TTCTGTAGTGGGTGTATTAC+AGG - chr3_1:12617428-12617447 Msa0349220:CDS 40.0%
ATGCCTGTTAATGCAAATGC+TGG + chr3_1:12618031-12618050 None:intergenic 40.0%
! CCCGTTTGTAACTCATTTTC+AGG + chr3_1:12618336-12618355 None:intergenic 40.0%
GAGCCTCAAGAAACAATTAG+AGG + chr3_1:12618663-12618682 None:intergenic 40.0%
GGTCTGACACAAATCAATGT+CGG + chr3_1:12618930-12618949 None:intergenic 40.0%
! TTCTGATTGAAGGTGTGTCT+GGG + chr3_1:12618952-12618971 None:intergenic 40.0%
! ATTTGAAGAGGTATGGAACC+AGG + chr3_1:12619197-12619216 None:intergenic 40.0%
CTTCCTCCTAACGTAAACTT+TGG - chr3_1:12619256-12619275 Msa0349220:intron 40.0%
TTGCCAAAGTTTACGTTAGG+AGG + chr3_1:12619262-12619281 None:intergenic 40.0%
TTCCTCAAGGTTGAAAGTCT+GGG + chr3_1:12619520-12619539 None:intergenic 40.0%
TTTCCTCAAGGTTGAAAGTC+TGG + chr3_1:12619521-12619540 None:intergenic 40.0%
GACTTTCAACCTTGAGGAAA+AGG - chr3_1:12619521-12619540 Msa0349220:intron 40.0%
! CCAAAAGAACCTTTTCCTCA+AGG + chr3_1:12619533-12619552 None:intergenic 40.0%
! CCTTGAGGAAAAGGTTCTTT+TGG - chr3_1:12619530-12619549 Msa0349220:intron 40.0%
! TACGAGTAGTAGCTTTTGGA+TGG - chr3_1:12619990-12620009 Msa0349220:intron 40.0%
ACAAGCACTCTATCTTCACT+CGG - chr3_1:12620240-12620259 Msa0349220:intron 40.0%
CTGATGTCATTATGTGTGCT+TGG + chr3_1:12620513-12620532 None:intergenic 40.0%
CAAGCACACATAATGACATC+AGG - chr3_1:12620511-12620530 Msa0349220:intron 40.0%
! ATCAGGGAATCTATTGGTTG+AGG - chr3_1:12620528-12620547 Msa0349220:intron 40.0%
GTTGAGAAGATACCAGATAG+TGG + chr3_1:12620585-12620604 None:intergenic 40.0%
CTCAACAACAATGCTTGATC+GGG + chr3_1:12620686-12620705 None:intergenic 40.0%
GACTCCCTCATCTTATAAAC+CGG + chr3_1:12620751-12620770 None:intergenic 40.0%
!! TCTTACCAGTCGGTTTTGTA+GGG + chr3_1:12620889-12620908 None:intergenic 40.0%
!! ATCTTACCAGTCGGTTTTGT+AGG + chr3_1:12620890-12620909 None:intergenic 40.0%
CAAAACCGACTGGTAAGATA+AGG - chr3_1:12620891-12620910 Msa0349220:intron 40.0%
GAATCCCTTATCTTACCAGT+CGG + chr3_1:12620899-12620918 None:intergenic 40.0%
TTTCACACCTAGGATCTTAG+TGG - chr3_1:12620934-12620953 Msa0349220:intron 40.0%
TTAAAGTTTGTCAACGGCAG+TGG - chr3_1:12621461-12621480 Msa0349220:intron 40.0%
CTCTCAAATTGCTTCAGCTA+AGG - chr3_1:12621484-12621503 Msa0349220:intron 40.0%
GAGAAAGAAGAGAGGTAAAC+TGG + chr3_1:12621597-12621616 None:intergenic 40.0%
CGTTCACATGCTGAAAGAAT+AGG + chr3_1:12621678-12621697 None:intergenic 40.0%
AGCATTCTCCTCTATCATTG+TGG - chr3_1:12621741-12621760 Msa0349220:intron 40.0%
TACTGCACATGATCCAAATC+TGG + chr3_1:12621859-12621878 None:intergenic 40.0%
TTATTTGGAAAGAAGGGACC+AGG + chr3_1:12622009-12622028 None:intergenic 40.0%
! ATCAGACTCTGAAAGTGACA+TGG - chr3_1:12622088-12622107 Msa0349220:intron 40.0%
! AGAAACTTTCTAGCAACGGA+CGG + chr3_1:12622185-12622204 None:intergenic 40.0%
TCCGTTGCTAGAAAGTTTCT+TGG - chr3_1:12622185-12622204 Msa0349220:intron 40.0%
AAACGAAAGAGGAACTACCA+TGG + chr3_1:12622224-12622243 None:intergenic 40.0%
!! GCAAGTTTTGCTGTGTTTTC+TGG - chr3_1:12622314-12622333 Msa0349220:intron 40.0%
! TGGACACAGCATTAGACTTT+TGG - chr3_1:12622334-12622353 Msa0349220:intron 40.0%
! GGACACAGCATTAGACTTTT+GGG - chr3_1:12622335-12622354 Msa0349220:intron 40.0%
TACAGAGCTTGCAAGCTATT+TGG + chr3_1:12622382-12622401 None:intergenic 40.0%
TCCATGACATATCACACGAG+GGG + chr3_1:12616617-12616636 None:intergenic 45.0%
CTCCATGACATATCACACGA+GGG + chr3_1:12616618-12616637 None:intergenic 45.0%
CATGATGCTCTTGATGCTTC+TGG - chr3_1:12616682-12616701 Msa0349220:three_prime_UTR 45.0%
! GCACTGGCACTTGAGATTAA+AGG + chr3_1:12617291-12617310 None:intergenic 45.0%
ATGTGGGCAATTATGGCCAA+TGG - chr3_1:12617714-12617733 Msa0349220:intron 45.0%
ATGACATCGCAACGCAAGTA+CGG + chr3_1:12617742-12617761 None:intergenic 45.0%
GCGGTTTGCAGCATAAATTG+TGG + chr3_1:12617796-12617815 None:intergenic 45.0%
TTATGAATGAGCAGGAAGCC+AGG - chr3_1:12617956-12617975 Msa0349220:intron 45.0%
TATGAATGAGCAGGAAGCCA+GGG - chr3_1:12617957-12617976 Msa0349220:intron 45.0%
AGCTGCAGAAGATGATTCTC+TGG - chr3_1:12618080-12618099 Msa0349220:intron 45.0%
!! CTTGAAACGAAGGCATCAAC+AGG + chr3_1:12618129-12618148 None:intergenic 45.0%
! TCATATGAAGGGGTGTAGTG+AGG + chr3_1:12618180-12618199 None:intergenic 45.0%
GGGCGATGAATCATATGAAG+GGG + chr3_1:12618190-12618209 None:intergenic 45.0%
CGGGCGATGAATCATATGAA+GGG + chr3_1:12618191-12618210 None:intergenic 45.0%
TCGGGCGATGAATCATATGA+AGG + chr3_1:12618192-12618211 None:intergenic 45.0%
! TCTGATTGAAGGTGTGTCTG+GGG + chr3_1:12618951-12618970 None:intergenic 45.0%
! CTTCTGATTGAAGGTGTGTC+TGG + chr3_1:12618953-12618972 None:intergenic 45.0%
CCACCGAAACTTCTGATTGA+AGG + chr3_1:12618962-12618981 None:intergenic 45.0%
CCTTCAATCAGAAGTTTCGG+TGG - chr3_1:12618959-12618978 Msa0349220:CDS 45.0%
TTCGGTGGTACATAGTTCCT+CGG - chr3_1:12618974-12618993 Msa0349220:CDS 45.0%
!! GTTTTAGATGTGGAGGGAAC+AGG - chr3_1:12619465-12619484 Msa0349220:intron 45.0%
TTCCCAGACTTTCAACCTTG+AGG - chr3_1:12619515-12619534 Msa0349220:intron 45.0%
TTCATAACGGCAGCCAACTA+GGG - chr3_1:12619771-12619790 Msa0349220:intron 45.0%
ACACCAGTTTCCAGTTTCCA+CGG + chr3_1:12620029-12620048 None:intergenic 45.0%
!! GTTCTTCTGAAACCCTGTTG+CGG + chr3_1:12620199-12620218 None:intergenic 45.0%
TGGCTCCAATAGATTTGCAC+TGG + chr3_1:12620221-12620240 None:intergenic 45.0%
! GAGTGAAGATAGAGTGCTTG+TGG + chr3_1:12620241-12620260 None:intergenic 45.0%
!!! CAGGTTTTGACTCATCGTTC+AGG - chr3_1:12620337-12620356 Msa0349220:intron 45.0%
! AGTTTGACTCGATGACCCAA+CGG - chr3_1:12620825-12620844 Msa0349220:intron 45.0%
TTAAGATGGCAAGACCCGTT+GGG + chr3_1:12620843-12620862 None:intergenic 45.0%
! TTTAAGATGGCAAGACCCGT+TGG + chr3_1:12620844-12620863 None:intergenic 45.0%
!! CGGTTTTGTAGGGTTGAGTT+AGG + chr3_1:12620879-12620898 None:intergenic 45.0%
TGTGACCGTATTTCACACCT+AGG - chr3_1:12620924-12620943 Msa0349220:intron 45.0%
TAAGGCTGCTCAACATAGAC+TGG - chr3_1:12621502-12621521 Msa0349220:intron 45.0%
! ATAGACTGGATCGAGGTGTT+TGG - chr3_1:12621516-12621535 Msa0349220:intron 45.0%
! ACAATACCTGACGAAGTACC+AGG - chr3_1:12621782-12621801 Msa0349220:intron 45.0%
TTTGTTCCTGGTACTTCGTC+AGG + chr3_1:12621791-12621810 None:intergenic 45.0%
! GACGAAGTACCAGGAACAAA+AGG - chr3_1:12621791-12621810 Msa0349220:intron 45.0%
TTTCACGCAGTAAGCGATCT+CGG + chr3_1:12621956-12621975 None:intergenic 45.0%
TGTCGCGATTGAAACGAAAG+AGG + chr3_1:12622235-12622254 None:intergenic 45.0%
! ATCAGGTAAAGGCGTAAAGC+TGG + chr3_1:12622626-12622645 None:intergenic 45.0%
TCCCCTCGTGTGATATGTCA+TGG - chr3_1:12616613-12616632 Msa0349220:three_prime_UTR 50.0%
CCTCCATGACATATCACACG+AGG + chr3_1:12616619-12616638 None:intergenic 50.0%
CCTCGTGTGATATGTCATGG+AGG - chr3_1:12616616-12616635 Msa0349220:three_prime_UTR 50.0%
GACACTTACACGTGAGACAC+TGG - chr3_1:12616988-12617007 Msa0349220:CDS 50.0%
CTATTCACACACCTGCAGCT+TGG - chr3_1:12617825-12617844 Msa0349220:CDS 50.0%
!! CAGCTTGGTGTGATGGAAGA+TGG - chr3_1:12617840-12617859 Msa0349220:CDS 50.0%
CTGTGAACAGAATCCTTCCC+TGG + chr3_1:12617977-12617996 None:intergenic 50.0%
!! ACGAAGGCATCAACAGGAAG+TGG + chr3_1:12618123-12618142 None:intergenic 50.0%
GGCCCCAATACATCTTGGAT+AGG + chr3_1:12618433-12618452 None:intergenic 50.0%
TATTGGGGCCACCTGTTATC+AGG - chr3_1:12618443-12618462 Msa0349220:intron 50.0%
AGAGGAAGCCTGATAACAGG+TGG + chr3_1:12618454-12618473 None:intergenic 50.0%
GCTAGAGGAAGCCTGATAAC+AGG + chr3_1:12618457-12618476 None:intergenic 50.0%
! AAGAGGTATGGAACCAGGTG+GGG + chr3_1:12619192-12619211 None:intergenic 50.0%
! GAAGAGGTATGGAACCAGGT+GGG + chr3_1:12619193-12619212 None:intergenic 50.0%
! TGAAGAGGTATGGAACCAGG+TGG + chr3_1:12619194-12619213 None:intergenic 50.0%
GTTCATAACGGCAGCCAACT+AGG - chr3_1:12619770-12619789 Msa0349220:intron 50.0%
!!! AGTTTTGGGCCAACCCTAGT+TGG + chr3_1:12619787-12619806 None:intergenic 50.0%
ATGGATGTGAGTTGTCACCG+TGG - chr3_1:12620009-12620028 Msa0349220:intron 50.0%
TGAGTTGTCACCGTGGAAAC+TGG - chr3_1:12620016-12620035 Msa0349220:intron 50.0%
TCACCGTGGAAACTGGAAAC+TGG - chr3_1:12620023-12620042 Msa0349220:intron 50.0%
CACGTATGTAATGTGGCAGC+TGG - chr3_1:12620058-12620077 Msa0349220:intron 50.0%
TAAGCACATCCTTCACGCTC+AGG - chr3_1:12620789-12620808 Msa0349220:intron 50.0%
! GTTTGACTCGATGACCCAAC+GGG - chr3_1:12620826-12620845 Msa0349220:intron 50.0%
CTCAACCCTACAAAACCGAC+TGG - chr3_1:12620881-12620900 Msa0349220:intron 50.0%
GCTCAACATAGACTGGATCG+AGG - chr3_1:12621509-12621528 Msa0349220:intron 50.0%
! GACATGAGGCGTTCATTGTC+TGG - chr3_1:12621557-12621576 Msa0349220:intron 50.0%
GCTTACTGCGTGAAATGTCG+TGG - chr3_1:12621961-12621980 Msa0349220:intron 50.0%
CGTGGAAATACTACTGCTGC+AGG - chr3_1:12621979-12621998 Msa0349220:intron 50.0%
ACTACTGCTGCAGGATATCC+TGG - chr3_1:12621988-12622007 Msa0349220:intron 50.0%
GCGATTGAACCTCATCCAGT+TGG - chr3_1:12622142-12622161 Msa0349220:intron 50.0%
AACCTCATCCAGTTGGAGCA+AGG - chr3_1:12622149-12622168 Msa0349220:intron 50.0%
ATCCTTGCTCCAACTGGATG+AGG + chr3_1:12622154-12622173 None:intergenic 50.0%
TCATCCAGTTGGAGCAAGGA+TGG - chr3_1:12622153-12622172 Msa0349220:intron 50.0%
AGGCTCCAACGTTCAACACG+CGG - chr3_1:12616636-12616655 Msa0349220:three_prime_UTR 55.0%
AGTTGCCGCGTGTTGAACGT+TGG + chr3_1:12616644-12616663 None:intergenic 55.0%
CAACGCAAGTACGGCTCCAT+TGG + chr3_1:12617733-12617752 None:intergenic 55.0%
!! ACACCTGCAGCTTGGTGTGA+TGG - chr3_1:12617833-12617852 Msa0349220:CDS 55.0%
CTTCCATCACACCAAGCTGC+AGG + chr3_1:12617839-12617858 None:intergenic 55.0%
AATGAGCAGGAAGCCAGGGA+AGG - chr3_1:12617961-12617980 Msa0349220:intron 55.0%
CAGGTGGCCCCAATACATCT+TGG + chr3_1:12618438-12618457 None:intergenic 55.0%
! GCGATTTAGAGCGTGGCTAG+AGG + chr3_1:12618472-12618491 None:intergenic 55.0%
! GGACTGTGCGATTTAGAGCG+TGG + chr3_1:12618479-12618498 None:intergenic 55.0%
AATCGCACAGTCCTGCGTGA+AGG - chr3_1:12618486-12618505 Msa0349220:intron 55.0%
ATCGCACAGTCCTGCGTGAA+GGG - chr3_1:12618487-12618506 Msa0349220:intron 55.0%
GGATGGTGCAAACATTGCCG+AGG + chr3_1:12618994-12619013 None:intergenic 55.0%
AGAGACAGAGAATCCCCACC+TGG - chr3_1:12619176-12619195 Msa0349220:intron 55.0%
TAACGGCAGCCAACTAGGGT+TGG - chr3_1:12619775-12619794 Msa0349220:intron 55.0%
TTCAAACCTCTGGCCGCAAC+AGG - chr3_1:12620183-12620202 Msa0349220:intron 55.0%
TCAAACCTCTGGCCGCAACA+GGG - chr3_1:12620184-12620203 Msa0349220:intron 55.0%
ACATCCTTCACGCTCAGGAC+TGG - chr3_1:12620794-12620813 Msa0349220:intron 55.0%
ATGTCCAGTCCTGAGCGTGA+AGG + chr3_1:12620801-12620820 None:intergenic 55.0%
AACCAAGGTGCATGCTCCTG+TGG + chr3_1:12621020-12621039 None:intergenic 55.0%
GTTTGGACCACTGTGCGCTT+TGG - chr3_1:12621533-12621552 Msa0349220:intron 55.0%
GACTCCATCCTTGCTCCAAC+TGG + chr3_1:12622160-12622179 None:intergenic 55.0%
TCGCACAGTCCTGCGTGAAG+GGG - chr3_1:12618488-12618507 Msa0349220:intron 60.0%
ACACACTCACCCCTTCACGC+AGG + chr3_1:12618500-12618519 None:intergenic 60.0%
TGAAACCCTGTTGCGGCCAG+AGG + chr3_1:12620192-12620211 None:intergenic 60.0%
GACCTCTTGCCTTCGTCCAC+AGG - chr3_1:12621001-12621020 Msa0349220:CDS 60.0%
CTCCTGTGGACGAAGGCAAG+AGG + chr3_1:12621006-12621025 None:intergenic 60.0%
GTGCATGCTCCTGTGGACGA+AGG + chr3_1:12621013-12621032 None:intergenic 60.0%
! GTCCACAGGAGCATGCACCT+TGG - chr3_1:12621015-12621034 Msa0349220:CDS 60.0%
CATGTCGCCAAAGCGCACAG+TGG + chr3_1:12621543-12621562 None:intergenic 60.0%
CTGTGCGCTTTGGCGACATG+AGG - chr3_1:12621543-12621562 Msa0349220:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 12616454 12622722 12616454 ID=Msa0349220;Name=Msa0349220
chr3_1 mRNA 12616454 12622722 12616454 ID=Msa0349220-mRNA-1;Parent=Msa0349220;Name=Msa0349220-mRNA-1;_AED=0.11;_eAED=0.11;_QI=66|0.85|0.75|1|1|1|8|493|428
chr3_1 exon 12616454 12617114 12616454 ID=Msa0349220-mRNA-1:exon:3260;Parent=Msa0349220-mRNA-1
chr3_1 exon 12617364 12617488 12617364 ID=Msa0349220-mRNA-1:exon:3259;Parent=Msa0349220-mRNA-1
chr3_1 exon 12617598 12617695 12617598 ID=Msa0349220-mRNA-1:exon:3258;Parent=Msa0349220-mRNA-1
chr3_1 exon 12617789 12617907 12617789 ID=Msa0349220-mRNA-1:exon:3257;Parent=Msa0349220-mRNA-1
chr3_1 exon 12618627 12618836 12618627 ID=Msa0349220-mRNA-1:exon:3256;Parent=Msa0349220-mRNA-1
chr3_1 exon 12618915 12619002 12618915 ID=Msa0349220-mRNA-1:exon:3255;Parent=Msa0349220-mRNA-1
chr3_1 exon 12620935 12621206 12620935 ID=Msa0349220-mRNA-1:exon:3254;Parent=Msa0349220-mRNA-1
chr3_1 exon 12622450 12622722 12622450 ID=Msa0349220-mRNA-1:exon:3253;Parent=Msa0349220-mRNA-1
chr3_1 five_prime_UTR 12622657 12622722 12622657 ID=Msa0349220-mRNA-1:five_prime_utr;Parent=Msa0349220-mRNA-1
chr3_1 CDS 12622450 12622656 12622450 ID=Msa0349220-mRNA-1:cds;Parent=Msa0349220-mRNA-1
chr3_1 CDS 12620935 12621206 12620935 ID=Msa0349220-mRNA-1:cds;Parent=Msa0349220-mRNA-1
chr3_1 CDS 12618915 12619002 12618915 ID=Msa0349220-mRNA-1:cds;Parent=Msa0349220-mRNA-1
chr3_1 CDS 12618627 12618836 12618627 ID=Msa0349220-mRNA-1:cds;Parent=Msa0349220-mRNA-1
chr3_1 CDS 12617789 12617907 12617789 ID=Msa0349220-mRNA-1:cds;Parent=Msa0349220-mRNA-1
chr3_1 CDS 12617598 12617695 12617598 ID=Msa0349220-mRNA-1:cds;Parent=Msa0349220-mRNA-1
chr3_1 CDS 12617364 12617488 12617364 ID=Msa0349220-mRNA-1:cds;Parent=Msa0349220-mRNA-1
chr3_1 CDS 12616947 12617114 12616947 ID=Msa0349220-mRNA-1:cds;Parent=Msa0349220-mRNA-1
chr3_1 three_prime_UTR 12616454 12616946 12616454 ID=Msa0349220-mRNA-1:three_prime_utr;Parent=Msa0349220-mRNA-1
Gene Sequence

>Msa0349220

ATGTCTTGTGTCTCATCTTCTTCTCTTCCCACAACCTCTTTCTTCTCTACATTCTCCAAATTCCAATTTTGCCCTCCTTCATTTTCTTATTCATCCCCTCGTGTGATATGTCATGGAGGCTCCAACGTTCAACACGCGGCAACTGACCTCAAGTTCTTCTTGCATGATGCTCTTGATGCTTCTGGAATTGATACTGCTCATGCCAGAGAAGCCAGGGAAGGATTCTGTTCACAGATTAAGAGACTTACTGATATTGAGAAAGAAACCAGCATTTGCATTAACAGGCATGTTGATTTGGGTAGAACTGCTCTCTATATAGCTGCAGAAGATGATTCTCTGGTATCACATTCATCGGTACCACTTCCTGTTGATGCCTTCGTTTCAAGATTAGATGATCTTTCAATGGACTACTGTCCTCACTACACCCCTTCATATGATTCATCGCCCGAGAAGTTTTTAGAGAGCATAGAAAGATTTTTATTAACTATTTCAAACCTCTGGCCGCAACAGGGTTTCAGAAGAACCAGTGCAAATCTATTGGAGCCACAAGCACTCTATCTTCACTCGGTTTTGACTCATCGTTCAGGATCACCTGCAATGCTGTCACTTATATACTCAGAAATTCTGAAAATGCTTCGTTTATGGGGCCTTTTGTATTTTGATGCAGAAATTTTCTACCCTCATGATATTTTTAATGTTCCTAAAGGCTATCATAAGCTGAAAAGCAAGGAATCAGACCAAGCACACATAATGACATCAGGGAATCTATTGGTTGAGATATTAAATAATCTGAAGCATGCATTCTGGCCTTTTCATCATGATCATACAAAAACCTTATTTTTAAGGGCAGCACATGCTGCAAACTGTGTTGACAGATCTGATTTTGTTGGAGAAAGTGGCTCTCAAATTGCTTCAGCTAAGGCTGCTCAACATAGACTGGATCGAGGTGTTTGGACCACTGTGCGCTTTGGCGACATGAGGCGTTCATTGTCTGCATGTGAACGCCTTATCCTCGTTACAAATGATCCAAATGAGCTAAGAGATTACAGCATTCTCCTCTATCATTGTGGATTATACGAGGAGTCGCTACAATACCTGACGAAGTACCAGGAACAAAAGAACTCATCTACACAAGTGCTGACATCATCAGACTCTGAAAGTGACATGGAAGAAGATGCTGCCGTCGATAAACTAATAACGCGATTGAACCTCATCCAGTTGGAGCAAGGATGGAGTCAGCCGTCCGTTGCTAGAAAGTTTCTTGGTAATAACTCTGATCCATGGTAG

Protein sequence

>Msa0349220

MSCVSSSSLPTTSFFSTFSKFQFCPPSFSYSSPRVICHGGSNVQHAATDLKFFLHDALDASGIDTAHAREAREGFCSQIKRLTDIEKETSICINRHVDLGRTALYIAAEDDSLVSHSSVPLPVDAFVSRLDDLSMDYCPHYTPSYDSSPEKFLESIERFLLTISNLWPQQGFRRTSANLLEPQALYLHSVLTHRSGSPAMLSLIYSEILKMLRLWGLLYFDAEIFYPHDIFNVPKGYHKLKSKESDQAHIMTSGNLLVEILNNLKHAFWPFHHDHTKTLFLRAAHAANCVDRSDFVGESGSQIASAKAAQHRLDRGVWTTVRFGDMRRSLSACERLILVTNDPNELRDYSILLYHCGLYEESLQYLTKYQEQKNSSTQVLTSSDSESDMEEDAAVDKLITRLNLIQLEQGWSQPSVARKFLGNNSDPW*