AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0590260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0590260 MtrunA17_Chr4g0007661 91.919 198 12 1 1 198 1 194 3.94e-116 328
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0590260 AT4G13200.1 73.750 80 19 1 69 148 65 142 8.07e-35 122

Find 65 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTCCCCGTTTCTTGAAAT+TGG 0.187757 4_2:-13615082 Msa0590260:three_prime_UTR
GAGGATGTTGGAAAAGGTTT+TGG 0.267900 4_2:+13618244 None:intergenic
AAAACAAGTACAGGAATTTC+AGG 0.306473 4_2:-13616279 Msa0590260:intron
GTGTGTGTCTGTCTCTGTTT+TGG 0.310909 4_2:-13618337 Msa0590260:five_prime_UTR
TTTATGTTTACTTCTTCCTT+TGG 0.342946 4_2:-13615142 Msa0590260:three_prime_UTR
AGTGGGCTCAATGTATATTT+CGG 0.360139 4_2:+13615238 None:intergenic
ACATTCCAATTTCAAGAAAC+GGG 0.367974 4_2:+13615077 None:intergenic
CACATTCCAATTTCAAGAAA+CGG 0.378190 4_2:+13615076 None:intergenic
GTAGACTGTACGGAAGTAAC+TGG 0.423294 4_2:+13615269 None:intergenic
GTGATTATACCTCAATGAAT+AGG 0.427301 4_2:-13615056 Msa0590260:three_prime_UTR
GAAGCGAAGGTTGTTGGAGA+TGG 0.430525 4_2:+13618278 None:intergenic
AGATGGTGAAGGGGAGAGAC+TGG 0.433088 4_2:+13618295 None:intergenic
CTAGGAGAAGCGAAGGTTGT+TGG 0.443557 4_2:+13618272 None:intergenic
AACTTTCCAGCTGCAACAAA+AGG 0.444492 4_2:-13618190 Msa0590260:CDS
ATCTTTGATGTGATTTGTGT+TGG 0.451114 4_2:-13614996 Msa0590260:three_prime_UTR
GCTGGAAAGTTGAATGCATA+TGG 0.471661 4_2:+13618202 None:intergenic
GTGGTGGATACATCTACTTC+AGG 0.473097 4_2:-13615314 Msa0590260:CDS
AGAAGAAGGAACGAGGATGT+TGG 0.477615 4_2:+13618232 None:intergenic
CAACAACCTTCGCTTCTCCT+AGG 0.487374 4_2:-13618271 Msa0590260:CDS
AAGTTGAATGCATATGGGTT+TGG 0.500968 4_2:+13618208 None:intergenic
TATCACTTATGAACTTAATG+TGG 0.501100 4_2:+13615202 None:intergenic
TGTTAAAACGTATCACAACT+TGG 0.505464 4_2:-13615102 Msa0590260:three_prime_UTR
AGGAACGAGGATGTTGGAAA+AGG 0.507028 4_2:+13618238 None:intergenic
TCTTATACAGGAAGAAGTGT+TGG 0.510600 4_2:-13615432 Msa0590260:intron
AGAGGCACAACCGCGGGGAC+TGG 0.510821 4_2:-13615366 Msa0590260:CDS
AGCTACAGAGGCACAACCGC+GGG 0.512026 4_2:-13615372 Msa0590260:CDS
ACAATACCTTCTTCCCTGGT+GGG 0.513213 4_2:-13618139 Msa0590260:CDS
AACAATACCTTCTTCCCTGG+TGG 0.526584 4_2:-13618140 Msa0590260:CDS
TCTTTGATGTGATTTGTGTT+GGG 0.530541 4_2:-13614995 Msa0590260:three_prime_UTR
ATCACTTATGAACTTAATGT+GGG 0.538123 4_2:+13615203 None:intergenic
CTGGAAAGTTGAATGCATAT+GGG 0.538772 4_2:+13618203 None:intergenic
AAGGTTGTTGGAGATGGTGA+AGG 0.541919 4_2:+13618284 None:intergenic
GGTGAGCTCTTGAGTACAGT+TGG 0.546113 4_2:-13616323 Msa0590260:CDS
ATAAAATAGTTTACCAGAGG+GGG 0.550373 4_2:+13618115 None:intergenic
GAGCGCATTGAGTCGACACT+TGG 0.551517 4_2:-13616344 Msa0590260:CDS
GTGGGATCCTCCCCTTCAGT+GGG 0.555642 4_2:+13615221 None:intergenic
AGGTTGTTGGAGATGGTGAA+GGG 0.556621 4_2:+13618285 None:intergenic
GTGGAAAGTGTTGGAAAGTG+TGG 0.559971 4_2:-13618398 Msa0590260:five_prime_UTR
TGTGGGATCCTCCCCTTCAG+TGG 0.562869 4_2:+13615220 None:intergenic
ACATCTTGTGTGGAAAGTGT+TGG 0.571426 4_2:-13618407 None:intergenic
AATAAAATAGTTTACCAGAG+GGG 0.576394 4_2:+13618114 None:intergenic
TGTAACAATACCTTCTTCCC+TGG 0.577863 4_2:-13618143 Msa0590260:CDS
ATATACATTGAGCCCACTGA+AGG 0.585974 4_2:-13615233 Msa0590260:CDS
TTCTGTAGAAGCTGTAGACT+CGG 0.589146 4_2:+13615340 None:intergenic
CATTGAGCCCACTGAAGGGG+AGG 0.593326 4_2:-13615228 Msa0590260:CDS
CATATGGGTTTGGAAGAAGA+AGG 0.597786 4_2:+13618218 None:intergenic
GGTTGTTGGAGATGGTGAAG+GGG 0.598990 4_2:+13618286 None:intergenic
GGATGCATCAGTAGACTGTA+CGG 0.608134 4_2:+13615259 None:intergenic
AAGTGAACACCTATTCATTG+AGG 0.615195 4_2:+13615047 None:intergenic
TATACATTGAGCCCACTGAA+GGG 0.616249 4_2:-13615232 Msa0590260:CDS
GGAGAACCTAGGAGAAGCGA+AGG 0.618276 4_2:+13618265 None:intergenic
TGGAAAGTGTTGGAAAGTGT+GGG 0.618354 4_2:-13618397 Msa0590260:five_prime_UTR
TACAGCTTCTACAGAAGTCG+TGG 0.624697 4_2:-13615333 Msa0590260:CDS
ATACATTGAGCCCACTGAAG+GGG 0.634389 4_2:-13615231 Msa0590260:CDS
CTGTACGGAAGTAACTGGAT+CGG 0.637727 4_2:+13615274 None:intergenic
AGCTTCTACAGAAGTCGTGG+TGG 0.651039 4_2:-13615330 Msa0590260:CDS
AGCAGCGCGTGAAGCTACAG+AGG 0.653253 4_2:-13615384 Msa0590260:CDS
AACTTACATATACATGCCAA+AGG 0.655340 4_2:+13615126 None:intergenic
CATTCCAATTTCAAGAAACG+GGG 0.657652 4_2:+13615078 None:intergenic
ATTGTTACAGCGAAGTCCAG+TGG 0.665812 4_2:+13618157 None:intergenic
GTTTGGAAGAAGAAGGAACG+AGG 0.668466 4_2:+13618225 None:intergenic
TAAAATAGTTTACCAGAGGG+GGG 0.670309 4_2:+13618116 None:intergenic
AAGCTACAGAGGCACAACCG+CGG 0.698235 4_2:-13615373 Msa0590260:CDS
GACTCGGAAACCAGTCCCCG+CGG 0.698498 4_2:+13615356 None:intergenic
GCTACAGAGGCACAACCGCG+GGG 0.709325 4_2:-13615371 Msa0590260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCTATAATTTGTTT+TGG - chr4_2:13615438-13615457 Msa0590260:intron 10.0%
!!! TTTTTTCTATAATTTGTTTT+GGG - chr4_2:13615439-13615458 Msa0590260:intron 10.0%
!!! TTTTTCTATAATTTGTTTTG+GGG - chr4_2:13615440-13615459 Msa0590260:intron 15.0%
!! TTGTTAAACAAAAAATTAAG+AGG - chr4_2:13616504-13616523 Msa0590260:intron 15.0%
!!! TCTTTGTTTTAAAAAAAAGA+GGG + chr4_2:13616640-13616659 None:intergenic 15.0%
!! TTTCTCTTAAAATTTAATAG+CGG - chr4_2:13616672-13616691 Msa0590260:intron 15.0%
!!! GGATATATAGTTTTTTTAAA+GGG + chr4_2:13616894-13616913 None:intergenic 15.0%
!!! AGGATATATAGTTTTTTTAA+AGG + chr4_2:13616895-13616914 None:intergenic 15.0%
!!! AAAAAAAAAGTTCCAAATTT+TGG - chr4_2:13617577-13617596 Msa0590260:intron 15.0%
!! ACAAAAAAAAATATATCGAA+AGG + chr4_2:13618227-13618246 None:intergenic 15.0%
!! AAATAAAATAGTTTACCAGA+GGG + chr4_2:13615281-13615300 None:intergenic 20.0%
!!! GAATGGTATGTTTTAATTTT+AGG - chr4_2:13615502-13615521 Msa0590260:intron 20.0%
!!! TTTTGCTTTACTTTAAAGTT+TGG - chr4_2:13615592-13615611 Msa0590260:intron 20.0%
!! TTTAATGTAATCATATGTGA+CGG - chr4_2:13615720-13615739 Msa0590260:intron 20.0%
!!! CAGTTTTAATCTTAATCAAA+GGG + chr4_2:13615943-13615962 None:intergenic 20.0%
!! ATCAAAGCAATAAATTTAGT+CGG + chr4_2:13615966-13615985 None:intergenic 20.0%
!!! TAAATTTTGGAAAAACCAAA+TGG + chr4_2:13616112-13616131 None:intergenic 20.0%
!! TACAAAAAGTTATGAAATAG+CGG + chr4_2:13616282-13616301 None:intergenic 20.0%
!! AAAATTAAGAGGATAACAAA+AGG - chr4_2:13616515-13616534 Msa0590260:intron 20.0%
!!! GTCTTTGTTTTAAAAAAAAG+AGG + chr4_2:13616641-13616660 None:intergenic 20.0%
!!! TATCCTTAGATTTTTGTATT+AGG - chr4_2:13616909-13616928 Msa0590260:intron 20.0%
!! AGTAAACAACAATATTGTTT+AGG + chr4_2:13617240-13617259 None:intergenic 20.0%
!!! AAAATGTTGTTACTTGTATT+GGG - chr4_2:13617534-13617553 Msa0590260:intron 20.0%
!! TAAATTATGTACCATTAGAT+TGG + chr4_2:13617874-13617893 None:intergenic 20.0%
!! CGAAATTATAATTCTTATAC+AGG - chr4_2:13617947-13617966 Msa0590260:intron 20.0%
! AATAAAATAGTTTACCAGAG+GGG + chr4_2:13615280-13615299 None:intergenic 25.0%
! GAAATAAAATAGTTTACCAG+AGG + chr4_2:13615282-13615301 None:intergenic 25.0%
!! ATTATTTCACATTTGCTGAA+TGG - chr4_2:13615485-13615504 Msa0590260:intron 25.0%
! TAGGATGAATAATTGAATTC+CGG - chr4_2:13615521-13615540 Msa0590260:intron 25.0%
!!! CTTTAAAGTTTGGTTTTTTC+CGG - chr4_2:13615602-13615621 Msa0590260:intron 25.0%
!!! TACTTTTCATTTAGCTCAAA+AGG - chr4_2:13615850-13615869 Msa0590260:intron 25.0%
! CTCAAAAGGTTATATAAAGA+TGG - chr4_2:13615864-13615883 Msa0590260:intron 25.0%
!!! GCAGTTTTAATCTTAATCAA+AGG + chr4_2:13615944-13615963 None:intergenic 25.0%
!! ATTTATTGCTTTGATAACCA+AGG - chr4_2:13615971-13615990 Msa0590260:intron 25.0%
!! TATCAGTCATCACTAAATTT+TGG + chr4_2:13616125-13616144 None:intergenic 25.0%
! CATGTATGTAATTACAAGTT+TGG + chr4_2:13616172-13616191 None:intergenic 25.0%
! GTAAACATAGTAGTTAATAG+CGG - chr4_2:13616195-13616214 Msa0590260:intron 25.0%
!!! CCATATTTTTGTTGTTTTTG+TGG + chr4_2:13616338-13616357 None:intergenic 25.0%
! CCACAAAAACAACAAAAATA+TGG - chr4_2:13616335-13616354 Msa0590260:CDS 25.0%
!! GTTTTATATGAACAAAACAG+AGG - chr4_2:13616379-13616398 Msa0590260:CDS 25.0%
! AACTTGAACAAAAAAGTAAC+AGG - chr4_2:13616465-13616484 Msa0590260:intron 25.0%
! GTACCTAATACAAAAATCTA+AGG + chr4_2:13616915-13616934 None:intergenic 25.0%
! ATTCAATCTGTTATCTCATA+TGG - chr4_2:13617197-13617216 Msa0590260:intron 25.0%
! TTCAATCTGTTATCTCATAT+GGG - chr4_2:13617198-13617217 Msa0590260:intron 25.0%
!! TGTTTACTGACTATATTCAT+TGG - chr4_2:13617252-13617271 Msa0590260:intron 25.0%
! ATACTAATAATAGCTGGTAT+AGG - chr4_2:13617482-13617501 Msa0590260:intron 25.0%
!! GAAAATGTTGTTACTTGTAT+TGG - chr4_2:13617533-13617552 Msa0590260:intron 25.0%
!! AAATGTTGTTACTTGTATTG+GGG - chr4_2:13617535-13617554 Msa0590260:intron 25.0%
! TCTTCATAACTACCAAAATT+TGG + chr4_2:13617592-13617611 None:intergenic 25.0%
! ATCAGTTATGTATTCCAAAA+TGG - chr4_2:13617632-13617651 Msa0590260:intron 25.0%
!! ATTGACTCAGAAATTCAAAT+TGG + chr4_2:13617672-13617691 None:intergenic 25.0%
! TTTGCTGCAAAACATATTAT+TGG - chr4_2:13617693-13617712 Msa0590260:intron 25.0%
! TTGCTGCAAAACATATTATT+GGG - chr4_2:13617694-13617713 Msa0590260:intron 25.0%
!! TAATTTAAAATGACCGCTTA+TGG - chr4_2:13617887-13617906 Msa0590260:intron 25.0%
!! AATTTAAAATGACCGCTTAT+GGG - chr4_2:13617888-13617907 Msa0590260:intron 25.0%
! ATCACTTATGAACTTAATGT+GGG + chr4_2:13618191-13618210 None:intergenic 25.0%
! TATCACTTATGAACTTAATG+TGG + chr4_2:13618192-13618211 None:intergenic 25.0%
! TTTATGTTTACTTCTTCCTT+TGG - chr4_2:13618249-13618268 Msa0590260:CDS 25.0%
ATAAAATAGTTTACCAGAGG+GGG + chr4_2:13615279-13615298 None:intergenic 30.0%
CATCAAAATCAACAAGAGAA+AGG + chr4_2:13615304-13615323 None:intergenic 30.0%
ATAAATTCCCAATAAGTTGC+CGG + chr4_2:13615543-13615562 None:intergenic 30.0%
CTCTCAATCATTATGAATCT+AGG + chr4_2:13615804-13615823 None:intergenic 30.0%
AGATTCATAATGATTGAGAG+AGG - chr4_2:13615804-13615823 Msa0590260:intron 30.0%
ATGTTACAATAATGCTACCT+TGG + chr4_2:13615991-13616010 None:intergenic 30.0%
!!! AGTCTGGTTTTTAAACCATT+TGG - chr4_2:13616094-13616113 Msa0590260:intron 30.0%
TGACTGATAATCCATTCTTA+AGG - chr4_2:13616136-13616155 Msa0590260:intron 30.0%
GCAAAACAAATCCTTAAGAA+TGG + chr4_2:13616150-13616169 None:intergenic 30.0%
TCGTAAATATGTGGTTTACA+CGG - chr4_2:13616857-13616876 Msa0590260:intron 30.0%
TTGAAGTATGTGAATCATGT+AGG - chr4_2:13616951-13616970 Msa0590260:intron 30.0%
TGAACAACAAAAACAAGTAC+AGG - chr4_2:13617103-13617122 Msa0590260:intron 30.0%
AAAACAAGTACAGGAATTTC+AGG - chr4_2:13617112-13617131 Msa0590260:intron 30.0%
! TTCAGGTAAGGATTTTCAAT+TGG - chr4_2:13617129-13617148 Msa0590260:intron 30.0%
TACAAACTATCTTCAAGTAG+AGG - chr4_2:13617318-13617337 Msa0590260:intron 30.0%
TTGAAACTGTAGTCTATAGT+TGG - chr4_2:13617426-13617445 Msa0590260:intron 30.0%
TGAAACTGTAGTCTATAGTT+GGG - chr4_2:13617427-13617446 Msa0590260:intron 30.0%
! AATGTTGTTACTTGTATTGG+GGG - chr4_2:13617536-13617555 Msa0590260:intron 30.0%
GTATTCCAAAATGGTACATT+TGG - chr4_2:13617641-13617660 Msa0590260:intron 30.0%
CTCAGAAATTCAAATTGGAT+TGG + chr4_2:13617667-13617686 None:intergenic 30.0%
! TGGGCCATAAAAGTATATAT+CGG - chr4_2:13617713-13617732 Msa0590260:intron 30.0%
!! TGCACCGATATATACTTTTA+TGG + chr4_2:13617720-13617739 None:intergenic 30.0%
CATGATTCATGCATATCAAA+TGG - chr4_2:13617743-13617762 Msa0590260:intron 30.0%
!!! TGCTTTTTCCTTTGCTTTTT+TGG + chr4_2:13617991-13618010 None:intergenic 30.0%
AACTTACATATACATGCCAA+AGG + chr4_2:13618268-13618287 None:intergenic 30.0%
TGTTAAAACGTATCACAACT+TGG - chr4_2:13618289-13618308 Msa0590260:CDS 30.0%
ACATTCCAATTTCAAGAAAC+GGG + chr4_2:13618317-13618336 None:intergenic 30.0%
CACATTCCAATTTCAAGAAA+CGG + chr4_2:13618318-13618337 None:intergenic 30.0%
GTGATTATACCTCAATGAAT+AGG - chr4_2:13618335-13618354 Msa0590260:five_prime_UTR 30.0%
! ATCTTTGATGTGATTTGTGT+TGG - chr4_2:13618395-13618414 Msa0590260:five_prime_UTR 30.0%
AAGTTGAATGCATATGGGTT+TGG + chr4_2:13615186-13615205 None:intergenic 35.0%
CTGGAAAGTTGAATGCATAT+GGG + chr4_2:13615191-13615210 None:intergenic 35.0%
TAAAATAGTTTACCAGAGGG+GGG + chr4_2:13615278-13615297 None:intergenic 35.0%
!!! CTATAATTTGTTTTGGGGTG+TGG - chr4_2:13615445-13615464 Msa0590260:intron 35.0%
ATTGAATTCCGGCAACTTAT+TGG - chr4_2:13615532-13615551 Msa0590260:intron 35.0%
TTGAATTCCGGCAACTTATT+GGG - chr4_2:13615533-13615552 Msa0590260:intron 35.0%
!!! CGGTTTCGTTTTAAAAACAC+CGG + chr4_2:13615624-13615643 None:intergenic 35.0%
!!! CGGTGTTTTTAAAACGAAAC+CGG - chr4_2:13615622-13615641 Msa0590260:intron 35.0%
GGAGAATATTCTAACAGACT+TGG - chr4_2:13615885-13615904 Msa0590260:intron 35.0%
GTTTAAAAACCAGACTGAAC+TGG + chr4_2:13616090-13616109 None:intergenic 35.0%
!! TAGTAGTTAATAGCGGATAG+CGG - chr4_2:13616202-13616221 Msa0590260:intron 35.0%
! TATCCCGCTATAGCATTTTT+GGG + chr4_2:13616243-13616262 None:intergenic 35.0%
TTGTACAAACAGAAACAGAG+AGG - chr4_2:13616407-13616426 Msa0590260:CDS 35.0%
TGTACAAACAGAAACAGAGA+GGG - chr4_2:13616408-13616427 Msa0590260:CDS 35.0%
TGCAAAACACAAAACGCAAA+AGG + chr4_2:13616541-13616560 None:intergenic 35.0%
! AGAGAGAAGCTGAACTTTTT+AGG - chr4_2:13616591-13616610 Msa0590260:intron 35.0%
CTACTATGCTCGTAAATATG+TGG - chr4_2:13616848-13616867 Msa0590260:intron 35.0%
!! GTTCTGGATGCATTTTTCTT+AGG - chr4_2:13616999-13617018 Msa0590260:intron 35.0%
! AAGTACAGGAATTTCAGGTA+AGG - chr4_2:13617117-13617136 Msa0590260:intron 35.0%
ATTGTGTTGTGCTGGATTTA+TGG - chr4_2:13617153-13617172 Msa0590260:intron 35.0%
TAAAGTTGAACAACAACAGC+AGG + chr4_2:13617288-13617307 None:intergenic 35.0%
GTTGGACGTTAATGTTCAAT+CGG - chr4_2:13617457-13617476 Msa0590260:intron 35.0%
TCGGCTATACTAATAATAGC+TGG - chr4_2:13617476-13617495 Msa0590260:intron 35.0%
! ATGTTGTTACTTGTATTGGG+GGG - chr4_2:13617537-13617556 Msa0590260:intron 35.0%
! ATTGGCCAAATGTACCATTT+TGG + chr4_2:13617649-13617668 None:intergenic 35.0%
GACACAAAAATGACACTTGT+CGG + chr4_2:13617815-13617834 None:intergenic 35.0%
GTGTCTGTATACCAATCTAA+TGG - chr4_2:13617860-13617879 Msa0590260:intron 35.0%
ATCTAACATAGTCCCATAAG+CGG + chr4_2:13617903-13617922 None:intergenic 35.0%
! TCTTATACAGGAAGAAGTGT+TGG - chr4_2:13617959-13617978 Msa0590260:intron 35.0%
! AGTGGGCTCAATGTATATTT+CGG + chr4_2:13618156-13618175 None:intergenic 35.0%
CATTCCAATTTCAAGAAACG+GGG + chr4_2:13618316-13618335 None:intergenic 35.0%
AAGTGAACACCTATTCATTG+AGG + chr4_2:13618347-13618366 None:intergenic 35.0%
!!! GAAAAGGTTTTGGAGAACCT+AGG + chr4_2:13615140-13615159 None:intergenic 40.0%
! GAGGATGTTGGAAAAGGTTT+TGG + chr4_2:13615150-13615169 None:intergenic 40.0%
CATATGGGTTTGGAAGAAGA+AGG + chr4_2:13615176-13615195 None:intergenic 40.0%
GCTGGAAAGTTGAATGCATA+TGG + chr4_2:13615192-13615211 None:intergenic 40.0%
AACTTTCCAGCTGCAACAAA+AGG - chr4_2:13615201-13615220 Msa0590260:exon 40.0%
! AAAACTCCTTTTGTTGCAGC+TGG + chr4_2:13615210-13615229 None:intergenic 40.0%
! AAAAGGAGTTTTCAGACCAC+TGG - chr4_2:13615218-13615237 Msa0590260:CDS 40.0%
TGTAACAATACCTTCTTCCC+TGG - chr4_2:13615248-13615267 Msa0590260:CDS 40.0%
!!! TAATTTGTTTTGGGGTGTGG+TGG - chr4_2:13615448-13615467 Msa0590260:intron 40.0%
!!! AATTTGTTTTGGGGTGTGGT+GGG - chr4_2:13615449-13615468 Msa0590260:intron 40.0%
AACGAAACCGGAAATCAAAC+CGG - chr4_2:13615634-13615653 Msa0590260:intron 40.0%
AAACACATACTCCTCGGATT+AGG + chr4_2:13615781-13615800 None:intergenic 40.0%
TCTAGGAAACACATACTCCT+CGG + chr4_2:13615787-13615806 None:intergenic 40.0%
! TTCTAACAGACTTGGTCACT+TGG - chr4_2:13615893-13615912 Msa0590260:intron 40.0%
GACCAATTTGCCAATTGGTT+TGG + chr4_2:13616049-13616068 None:intergenic 40.0%
TAAAAACCAGACTGAACTGG+TGG + chr4_2:13616087-13616106 None:intergenic 40.0%
! ATCCCGCTATAGCATTTTTG+GGG + chr4_2:13616242-13616261 None:intergenic 40.0%
! CTATCCCGCTATAGCATTTT+TGG + chr4_2:13616244-13616263 None:intergenic 40.0%
! TTTTGTGGACAACATAGCCA+TGG + chr4_2:13616323-13616342 None:intergenic 40.0%
ACGAGCATAGTAGTCAATAG+CGG + chr4_2:13616841-13616860 None:intergenic 40.0%
TATGTGAATCATGTAGGCGA+TGG - chr4_2:13616957-13616976 Msa0590260:intron 40.0%
TAGCAGCAGCAAAAATGTTC+TGG - chr4_2:13616983-13617002 Msa0590260:intron 40.0%
! ATCTCATATGGGTTTGCTTC+AGG - chr4_2:13617209-13617228 Msa0590260:intron 40.0%
! TCTCATATGGGTTTGCTTCA+GGG - chr4_2:13617210-13617229 Msa0590260:intron 40.0%
TCTTCAAGTAGAGGCTATAG+TGG - chr4_2:13617327-13617346 Msa0590260:intron 40.0%
TAGTCTATAGTTGGGCACTT+GGG - chr4_2:13617435-13617454 Msa0590260:intron 40.0%
!! GCTTGAATCTGAAGTGTTGA+TGG + chr4_2:13617781-13617800 None:intergenic 40.0%
TTCTGTAGAAGCTGTAGACT+CGG + chr4_2:13618054-13618073 None:intergenic 40.0%
ATATACATTGAGCCCACTGA+AGG - chr4_2:13618158-13618177 Msa0590260:CDS 40.0%
TATACATTGAGCCCACTGAA+GGG - chr4_2:13618159-13618178 Msa0590260:CDS 40.0%
! GTGTGTGTCTGTCTCTGTTT+TGG - chr4_2:13615054-13615073 Msa0590260:three_prime_UTR 45.0%
AGGTTGTTGGAGATGGTGAA+GGG + chr4_2:13615109-13615128 None:intergenic 45.0%
AAGGTTGTTGGAGATGGTGA+AGG + chr4_2:13615110-13615129 None:intergenic 45.0%
AGGAACGAGGATGTTGGAAA+AGG + chr4_2:13615156-13615175 None:intergenic 45.0%
AGAAGAAGGAACGAGGATGT+TGG + chr4_2:13615162-13615181 None:intergenic 45.0%
GTTTGGAAGAAGAAGGAACG+AGG + chr4_2:13615169-13615188 None:intergenic 45.0%
ATTGTTACAGCGAAGTCCAG+TGG + chr4_2:13615237-13615256 None:intergenic 45.0%
AACAATACCTTCTTCCCTGG+TGG - chr4_2:13615251-13615270 Msa0590260:CDS 45.0%
ACAATACCTTCTTCCCTGGT+GGG - chr4_2:13615252-13615271 Msa0590260:CDS 45.0%
!! TAGCTCACCGGTTTGATTTC+CGG + chr4_2:13615644-13615663 None:intergenic 45.0%
GATTAGGCATGTTCTGGTGT+CGG + chr4_2:13615765-13615784 None:intergenic 45.0%
ACCAGACTGTGTTACAAGCA+CGG - chr4_2:13616023-13616042 Msa0590260:intron 45.0%
GGCCAAACCAATTGGCAAAT+TGG - chr4_2:13616044-13616063 Msa0590260:intron 45.0%
GAACGGACCAATTTGCCAAT+TGG + chr4_2:13616054-13616073 None:intergenic 45.0%
TTGAATCCACCAGTTCAGTC+TGG - chr4_2:13616078-13616097 Msa0590260:intron 45.0%
!!! CGCTATAGCATTTTTGGGGT+CGG + chr4_2:13616238-13616257 None:intergenic 45.0%
CGACCCCAAAAATGCTATAG+CGG - chr4_2:13616236-13616255 Msa0590260:intron 45.0%
GACCCCAAAAATGCTATAGC+GGG - chr4_2:13616237-13616256 Msa0590260:intron 45.0%
AGAGAGGGCAGAATGAAGTT+TGG - chr4_2:13616423-13616442 Msa0590260:intron 45.0%
CAATTGGCATTGTGTTGTGC+TGG - chr4_2:13617145-13617164 Msa0590260:intron 45.0%
!! GCTAGAGCATTGTAGCGTTT+AGG - chr4_2:13617351-13617370 Msa0590260:intron 45.0%
GTAGTCTATAGTTGGGCACT+TGG - chr4_2:13617434-13617453 Msa0590260:intron 45.0%
GGGGGGTTGTCAAATTATCT+AGG - chr4_2:13617554-13617573 Msa0590260:intron 45.0%
GGACAGAGCCAAAAAAGCAA+AGG - chr4_2:13617980-13617999 Msa0590260:intron 45.0%
TACAGCTTCTACAGAAGTCG+TGG - chr4_2:13618058-13618077 Msa0590260:intron 45.0%
!! GTGGTGGATACATCTACTTC+AGG - chr4_2:13618077-13618096 Msa0590260:intron 45.0%
CTGTACGGAAGTAACTGGAT+CGG + chr4_2:13618120-13618139 None:intergenic 45.0%
GTAGACTGTACGGAAGTAAC+TGG + chr4_2:13618125-13618144 None:intergenic 45.0%
GGATGCATCAGTAGACTGTA+CGG + chr4_2:13618135-13618154 None:intergenic 45.0%
ATACATTGAGCCCACTGAAG+GGG - chr4_2:13618160-13618179 Msa0590260:CDS 45.0%
TGGTCCCCGTTTCTTGAAAT+TGG - chr4_2:13618309-13618328 Msa0590260:exon 45.0%
GGTTGTTGGAGATGGTGAAG+GGG + chr4_2:13615108-13615127 None:intergenic 50.0%
GAAGCGAAGGTTGTTGGAGA+TGG + chr4_2:13615116-13615135 None:intergenic 50.0%
CTAGGAGAAGCGAAGGTTGT+TGG + chr4_2:13615122-13615141 None:intergenic 50.0%
CAACAACCTTCGCTTCTCCT+AGG - chr4_2:13615120-13615139 Msa0590260:three_prime_UTR 50.0%
AACCGGTGAGCTATGAAGCA+CGG - chr4_2:13615651-13615670 Msa0590260:intron 50.0%
ACCAGAACATGCCTAATCCG+AGG - chr4_2:13615767-13615786 Msa0590260:intron 50.0%
! TCCTCGGATTAGGCATGTTC+TGG + chr4_2:13615771-13615790 None:intergenic 50.0%
ACAAGCACGGCCAAACCAAT+TGG - chr4_2:13616036-13616055 Msa0590260:intron 50.0%
TTGGCAAATTGGTCCGTTCC+TGG - chr4_2:13616055-13616074 Msa0590260:intron 50.0%
!! CTGGTGGATTCAACCAGGAA+CGG + chr4_2:13616071-13616090 None:intergenic 50.0%
!! CTGAACTGGTGGATTCAACC+AGG + chr4_2:13616076-13616095 None:intergenic 50.0%
AACATAGCCATGGCAGCATC+AGG + chr4_2:13616313-13616332 None:intergenic 50.0%
GTGAGATAGCGCTGCTATAG+CGG + chr4_2:13616742-13616761 None:intergenic 50.0%
TATCTCACACCGCAACGCTA+TGG - chr4_2:13616754-13616773 Msa0590260:intron 50.0%
GGTGAGCTCTTGAGTACAGT+TGG - chr4_2:13617068-13617087 Msa0590260:intron 50.0%
CTATAGTTGGGCACTTGGGT+TGG - chr4_2:13617439-13617458 Msa0590260:intron 50.0%
AGCTTCTACAGAAGTCGTGG+TGG - chr4_2:13618061-13618080 Msa0590260:intron 50.0%
AGATGGTGAAGGGGAGAGAC+TGG + chr4_2:13615099-13615118 None:intergenic 55.0%
GGAGAACCTAGGAGAAGCGA+AGG + chr4_2:13615129-13615148 None:intergenic 55.0%
!!! TTGTTTTGGGGTGTGGTGGG+TGG - chr4_2:13615452-13615471 Msa0590260:intron 55.0%
!!! TGTTTTGGGGTGTGGTGGGT+GGG - chr4_2:13615453-13615472 Msa0590260:intron 55.0%
GTCCGTGCTTCATAGCTCAC+CGG + chr4_2:13615656-13615675 None:intergenic 55.0%
GAGCTATGAAGCACGGACAC+TGG - chr4_2:13615658-13615677 Msa0590260:intron 55.0%
GCCGTGCTTGTAACACAGTC+TGG + chr4_2:13616027-13616046 None:intergenic 55.0%
ACCAGAACCTGATGCTGCCA+TGG - chr4_2:13616303-13616322 Msa0590260:CDS 55.0%
! AACGCTGCGTAGCGGTTTTG+CGG + chr4_2:13616716-13616735 None:intergenic 55.0%
CGCAACAAGCCATAGCGTTG+CGG + chr4_2:13616766-13616785 None:intergenic 55.0%
GGTCAATAGCGCCGCTATAG+CGG + chr4_2:13616820-13616839 None:intergenic 55.0%
GAGCGCATTGAGTCGACACT+TGG - chr4_2:13617047-13617066 Msa0590260:intron 55.0%
! AAGCTACAGAGGCACAACCG+CGG - chr4_2:13618018-13618037 Msa0590260:intron 55.0%
GCCATGGCAGCATCAGGTTC+TGG + chr4_2:13616307-13616326 None:intergenic 60.0%
! ACGCTGCGTAGCGGTTTTGC+GGG + chr4_2:13616715-13616734 None:intergenic 60.0%
!! TGGCTTGTTGCGTAGCGCTC+CGG - chr4_2:13616774-13616793 Msa0590260:intron 60.0%
AGCAGCGCGTGAAGCTACAG+AGG - chr4_2:13618007-13618026 Msa0590260:intron 60.0%
! AGCTACAGAGGCACAACCGC+GGG - chr4_2:13618019-13618038 Msa0590260:intron 60.0%
CATTGAGCCCACTGAAGGGG+AGG - chr4_2:13618163-13618182 Msa0590260:CDS 60.0%
GTGGGATCCTCCCCTTCAGT+GGG + chr4_2:13618173-13618192 None:intergenic 60.0%
TGTGGGATCCTCCCCTTCAG+TGG + chr4_2:13618174-13618193 None:intergenic 60.0%
! TAGCGGATAGCGGCGCGTAG+CGG - chr4_2:13616212-13616231 Msa0590260:intron 65.0%
! TGCGTAGCGGTTTTGCGGGC+GGG + chr4_2:13616711-13616730 None:intergenic 65.0%
! CTGCGTAGCGGTTTTGCGGG+CGG + chr4_2:13616712-13616731 None:intergenic 65.0%
! GCTACAGAGGCACAACCGCG+GGG - chr4_2:13618020-13618039 Msa0590260:intron 65.0%
GACTCGGAAACCAGTCCCCG+CGG + chr4_2:13618038-13618057 None:intergenic 65.0%
TACCAGAGGGGGGCCCACCA+GGG + chr4_2:13615268-13615287 None:intergenic 70.0%
TTACCAGAGGGGGGCCCACC+AGG + chr4_2:13615269-13615288 None:intergenic 70.0%
!!! GCGGTTTTGCGGGCGGGTTG+CGG + chr4_2:13616705-13616724 None:intergenic 70.0%
AGCGGCGCAACGCTGCGTAG+CGG + chr4_2:13616724-13616743 None:intergenic 70.0%
! AGAGGCACAACCGCGGGGAC+TGG - chr4_2:13618025-13618044 Msa0590260:intron 70.0%
GGGGGGCCCACCAGGGAAGA+AGG + chr4_2:13615261-13615280 None:intergenic 75.0%
! TTCCCTGGTGGGCCCCCCTC+TGG - chr4_2:13615263-13615282 Msa0590260:CDS 75.0%
GCTATAGCGGCCGCGCGGTG+CGG + chr4_2:13616807-13616826 None:intergenic 75.0%
GCACCGCGCGGCCGCTATAG+CGG - chr4_2:13616806-13616825 Msa0590260:intron 75.0%
! GCGCCGCTATAGCGGCCGCG+CGG + chr4_2:13616812-13616831 None:intergenic 80.0%
! CGCGCGGTGCGGTGCGGTGC+CGG + chr4_2:13616796-13616815 None:intergenic 85.0%
! CGGCACCGCACCGCACCGCG+CGG - chr4_2:13616794-13616813 Msa0590260:intron 85.0%
! AGCGGCCGCGCGGTGCGGTG+CGG + chr4_2:13616802-13616821 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 13614995 13618418 13614995 ID=Msa0590260;Name=Msa0590260
chr4_2 mRNA 13614995 13618418 13614995 ID=Msa0590260-mRNA-1;Parent=Msa0590260;Name=Msa0590260-mRNA-1;_AED=0.07;_eAED=0.07;_QI=91|1|1|1|1|1|3|213|198
chr4_2 exon 13614995 13615444 13614995 ID=Msa0590260-mRNA-1:exon:3964;Parent=Msa0590260-mRNA-1
chr4_2 exon 13616280 13616440 13616280 ID=Msa0590260-mRNA-1:exon:3963;Parent=Msa0590260-mRNA-1
chr4_2 exon 13618129 13618418 13618129 ID=Msa0590260-mRNA-1:exon:3962;Parent=Msa0590260-mRNA-1
chr4_2 five_prime_UTR 13618328 13618418 13618328 ID=Msa0590260-mRNA-1:five_prime_utr;Parent=Msa0590260-mRNA-1
chr4_2 CDS 13618129 13618327 13618129 ID=Msa0590260-mRNA-1:cds;Parent=Msa0590260-mRNA-1
chr4_2 CDS 13616280 13616440 13616280 ID=Msa0590260-mRNA-1:cds;Parent=Msa0590260-mRNA-1
chr4_2 CDS 13615208 13615444 13615208 ID=Msa0590260-mRNA-1:cds;Parent=Msa0590260-mRNA-1
chr4_2 three_prime_UTR 13614995 13615207 13614995 ID=Msa0590260-mRNA-1:three_prime_utr;Parent=Msa0590260-mRNA-1
Gene Sequence

>Msa0590260

ATGAACATCACCAGTCTCTCCCCTTCACCATCTCCAACAACCTTCGCTTCTCCTAGGTTCTCCAAAACCTTTTCCAACATCCTCGTTCCTTCTTCTTCCAAACCCATATGCATTCAACTTTCCAGCTGCAACAAAAGGAGTTTTCAGACCACTGGACTTCGCTGTAACAATACCTTCTTCCCTGGTGGGCCCCCCTCTGGCGATGGTGATAGCAGCAGCAAAAATGTTCTGGATGCATTTTTCTTAGGAAAAGCTCTTGCTGAAACTCTGAATGAGCGCATTGAGTCGACACTTGGTGAGCTCTTGAGTACAGTTGGAAGACTGCAAGCTGAACAACAAAAACAAGTACAGGAATTTCAGGAAGAAGTGTTGGACAGAGCCAAAAAAGCAAAGGAAAAAGCAGCGCGTGAAGCTACAGAGGCACAACCGCGGGGACTGGTTTCCGAGTCTACAGCTTCTACAGAAGTCGTGGTGGATACATCTACTTCAGGAACTTCGAGTTCTTCAACCGATCCAGTTACTTCCGTACAGTCTACTGATGCATCCGAAATATACATTGAGCCCACTGAAGGGGAGGATCCCACATTAAGTTCATAA

Protein sequence

>Msa0590260

MNITSLSPSPSPTTFASPRFSKTFSNILVPSSSKPICIQLSSCNKRSFQTTGLRCNNTFFPGGPPSGDGDSSSKNVLDAFFLGKALAETLNERIESTLGELLSTVGRLQAEQQKQVQEFQEEVLDRAKKAKEKAAREATEAQPRGLVSESTASTEVVVDTSTSGTSSSSTDPVTSVQSTDASEIYIEPTEGEDPTLSS*